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2024-05-02 10:27:53

Gene list

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Organism: Plasmid ColIb-P9

Number of genes found: 140

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Plasmid ColIb-P9
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA ColIb-P9 repeat_unit76154 19 + 0.631579
NA ColIb-P9 repeat_unit77188 19 + 0.631579
NA ColIb-P9 repeat_unit34787 494 + 0.653846
NA ColIb-P9 repeat_unit76660 19 - 0.631579
NA ColIb-P9 repeat_unit77161 29 - 0.62069
NA ColIb-P9 repeat_unit48247 152 + 0.486842
NA ColIb-P9 repeat_unit18708 20 + 0.25
NA ColIb-P9 repeat_unit48867 151 + 0.476821
NA ColIb-P9 repeat_unit18601 20 + 0.15
NA ColIb-P9 repeat_unit4453 21 + 0.238095
NA ColIb-P9 repeat_unit90353 141 + 0.546099
NA ColIb-P9 repeat_unit18789 20 + 0.15
NA ColIb-P9 repeat_unit27754 498 + 0.654619
NA ColIb-P9 repeat_unit48668 104 + 0.423077
NA ColIb-P9 repeat_unit26108 354 + 0.652542
NA ColIb-P9 repeat_unit39644 17 + 0.411765
NA ColIb-P9 conflict334 1 + 1
NA ColIb-P9 oriT39622 110 + 0.536364
NA ColIb-P9 repeat_unit89639 141 + 0.51773
NA ColIb-P9 repeat_unit71853 26 + 0.576923
NA ColIb-P9 repeat_unit76687 19 + 0.684211
NA ColIb-P9 repeat_unit18643 20 + 0.2
NA ColIb-P9 repeat_unit93039 26 + 0.615385
NA ColIb-P9 repeat_unit77743 19 - 0.631579
NA ColIb-P9 repeat_unit4474 20 - 0.25
NA ColIb-P9 repeat_unit18679 20 + 0.4
NA ColIb-P9 repeat_unit33744 355 + 0.653521
NA ColIb-P9 repeat_unit39667 17 - 0.411765
NA ColIb-P9 repeat_unit37850 325 + 0.627692
NA ColIb-P9 repeat_unit18742 20 + 0.2
ard anti-restriction proteinSubName: Full=Anti-restriction protein; ColIb-P9 CDS34105 501 + 0.552894
cib colicin Ib proteinSubName: Full=Colicin Ib protein; ColIb-P9 CDS8294 1881 + 0.458267
exc surface exclusion proteinSubName: Full=Surface exclusion protein; ColIb-P9 CDS49928 663 - 0.395173
ibfA (abi) abortive infection proteinSubName: Full=Abortive infection protein; ColIb-P9 CDS13401 345 - 0.478261
ibfC abortive infection proteinSubName: Full=Abortive infection protein; ColIb-P9 CDS13935 147 - 0.47619
imm immunity protein for colicin IbSubName: Full=Immunity protein for colicin Ib; ColIb-P9 CDS10192 348 - 0.336207
impA RecName: Full=Protein ImpA; EC=3.4.21.-; Contains: RecName: Full=Protein ImpA; ColIb-P9 CDS21492 438 - 0.557078
impB SubName: Full=ImpB protein; ColIb-P9 CDS20218 1275 - 0.515294
impC RecName: Full=Protein ImpC; ColIb-P9 CDS21926 249 - 0.514056
inc inc RNA ColIb-P9 misc_RNA292 72 - 0.472222
nikA relaxosome componentSubName: Full=Plasmid mobilization protein; SubName: Full=Relaxosome component; ColIb-P9 CDS39728 333 + 0.426426
nikB relaxaseSubName: Full=Relaxase; ColIb-P9 CDS40071 2700 + 0.519259
nuc nucleaseSubName: Full=Nuclease; ColIb-P9 CDS68375 552 - 0.496377
parA SubName: Full=ParA protein; ColIb-P9 CDS18827 981 + 0.440367
parB SubName: Full=ParB protein; ColIb-P9 CDS19800 417 + 0.429257
pilI SubName: Full=PilI protein; ColIb-P9 CDS89362 300 - 0.573333
pilJ SubName: Full=PilJ; SubName: Full=PilJ protein; ColIb-P9 CDS88899 297 - 0.380471
pilK SubName: Full=PilK; SubName: Full=PilK protein; ColIb-P9 CDS88309 594 - 0.36532
pilL lipoproteinSubName: Full=Lipoprotein; ColIb-P9 CDS87208 1068 - 0.502809
pilM SubName: Full=PilM; SubName: Full=PilM protein; ColIb-P9 CDS86771 438 - 0.484018
pilN lipoproteinSubName: Full=Lipoprotein; ColIb-P9 CDS85075 1683 - 0.492573
pilO SubName: Full=PilO protein; ColIb-P9 CDS83787 1296 - 0.489969
pilP SubName: Full=PilP protein; ColIb-P9 CDS83348 453 - 0.439294
pilQ ATP-binding proteinSubName: Full=ATP-binding protein; ColIb-P9 CDS81784 1554 - 0.469755
pilR integral membrane proteinSubName: Full=Integral membrane protein; ColIb-P9 CDS80674 1098 - 0.441712
pilS typeIV prepilinSubName: Full=TypeIV prepilin; ColIb-P9 CDS80042 615 - 0.437398
pilT SubName: Full=PilT; SubName: Full=PilT protein; ColIb-P9 CDS79472 561 - 0.43672
pilU prepilin peptidaseSubName: Full=Prepilin peptidase; ColIb-P9 CDS78831 657 - 0.420091
pilV typeIV prepilinSubName: Full=Type IV prepilin; SubName: Full=TypeIV prepilin; ColIb-P9 CDS77407 1425 - 0.469474
pndA post-segregation killing proteinSubName: Full=Post-segregation killing protein; ColIb-P9 CDS47677 156 + 0.461538
pndC counter protein for PndASubName: Full=Counter protein for PndA; ColIb-P9 CDS47541 285 + 0.470175
psiA plasmid SOS inhibition proteinSubName: Full=Plasmid SOS inhibition protein; ColIb-P9 CDS31633 720 + 0.559722
psiB plasmid SOS inhibition proteinSubName: Full=Plasmid SOS inhibition protein; ColIb-P9 CDS31202 435 + 0.544828
rci shufflon-specific recombinaseSubName: Full=Shufflon-specific recombinase; ColIb-P9 CDS74948 1155 - 0.488312
repY SubName: Full=RepY; SubName: Full=RepY protein; ColIb-P9 CDS378 90 + 0.5
repZ replication initiation proteinSubName: Full=Replication initiation protein; ColIb-P9 CDS455 1032 + 0.562016
resA resolvaseSubName: Full=Resolvase; ColIb-P9 CDS16415 780 + 0.589744
shfA shufflon protein ASubName: Full=Shufflon protein A; Flags: Fragment; ColIb-P9 CDS77201 210 + 0.490476
shfB shufflon protein BSubName: Full=Shufflon protein B; Flags: Fragment; ColIb-P9 CDS76167 246 + 0.402439
shfB' shufflon protein B'SubName: Full=Shufflon protein B; Flags: Fragment; ColIb-P9 CDS76414 252 - 0.488095
shfC shufflon protein CSubName: Full=Shufflon protein C; Flags: Fragment; ColIb-P9 CDS76915 252 - 0.444444
shfC' shufflon protein C'SubName: Full=Shufflon protein C; Flags: Fragment; ColIb-P9 CDS76700 219 + 0.424658
sogL DNA primaseSubName: Full=DNA primase; ColIb-P9 CDS64518 3768 - 0.543524
sogS DNA primaseSubName: Full=DNA primase; ColIb-P9 CDS64518 2535 - 0.527811
ssb single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; ColIb-P9 CDS28321 528 + 0.602273
ter ColIb-P9 misc_signal2019 22 + 0.227273
traA SubName: Full=TraA protein; ColIb-P9 CDS92413 288 - 0.447917
traB SubName: Full=TraB protein; ColIb-P9 CDS91438 534 - 0.43633
traC SubName: Full=TraC protein; ColIb-P9 CDS90502 684 - 0.501462
traE SubName: Full=TraE protein; ColIb-P9 CDS73973 825 - 0.435152
traF SubName: Full=TraF protein; ColIb-P9 CDS72685 1203 - 0.468828
traG SubName: Full=TraG protein; ColIb-P9 CDS72041 585 - 0.401709
traH SubName: Full=TraH protein; ColIb-P9 CDS71188 459 - 0.511983
traI SubName: Full=TraI TraI protein; SubName: Full=TraI protein; ColIb-P9 CDS70373 819 - 0.525031
traJ ATP-binding proteinSubName: Full=ATP-binding protein; ColIb-P9 CDS69228 1149 - 0.515231
traK SubName: Full=TraK protein; ColIb-P9 CDS68941 291 - 0.498282
traL SubName: Full=TraL protein; ColIb-P9 CDS64153 348 - 0.528736
traM SubName: Full=TraM protein; ColIb-P9 CDS63464 693 - 0.50938
traN SubName: Full=TraN protein; ColIb-P9 CDS62470 984 - 0.54065
traO SubName: Full=TraO protein; ColIb-P9 CDS61178 1290 - 0.510078
traP SubName: Full=TraP protein; ColIb-P9 CDS60474 705 - 0.506383
traQ SubName: Full=TraQ protein; ColIb-P9 CDS59947 528 - 0.524621
traR SubName: Full=TraR protein; ColIb-P9 CDS59492 405 - 0.501235
traS SubName: Full=TraS protein; ColIb-P9 CDS59240 189 - 0.486772
traT SubName: Full=TraT protein; ColIb-P9 CDS58456 801 - 0.508115
traU SubName: Full=TraU protein; ColIb-P9 CDS55322 3045 - 0.508703
traV SubName: Full=TraV protein; ColIb-P9 CDS54708 615 - 0.521951
traW SubName: Full=TraW protein; ColIb-P9 CDS53539 1203 - 0.530341
traX SubName: Full=TraX protein; ColIb-P9 CDS52926 585 - 0.483761
traY SubName: Full=TraY protein; ColIb-P9 CDS50661 2238 - 0.466041
trbA SubName: Full=TrbA protein; ColIb-P9 CDS46180 1209 - 0.511993
trbB SubName: Full=TrbB protein; ColIb-P9 CDS45091 1071 - 0.511671
trbC SubName: Full=TrbC protein; ColIb-P9 CDS42807 2292 - 0.498255
trcD SubName: Full=TrcD protein; SubName: Full=Uncharacterized protein; ColIb-P9 CDS89778 552 - 0.532609
yacA SubName: Full=YacA protein; ColIb-P9 CDS2395 270 + 0.514815
yacB SubName: Full=YacB protein; ColIb-P9 CDS2661 282 + 0.539007
yacC SubName: Full=YacC protein; ColIb-P9 CDS2982 849 + 0.563015
yadA SubName: Full=YadA protein; ColIb-P9 CDS3971 450 + 0.502222
yaeA SubName: Full=YaeA protein; ColIb-P9 CDS4555 234 + 0.397436
yaeB SubName: Full=YaeB protein; ColIb-P9 CDS4897 270 - 0.385185
yafA SubName: Full=YafA protein; ColIb-P9 CDS5163 495 - 0.377778
yafB SubName: Full=YafB protein; ColIb-P9 CDS5713 603 - 0.504146
yagA SubName: Full=YagA protein; ColIb-P9 CDS6669 1347 + 0.478099
ybaA SubName: Full=YbaA protein; ColIb-P9 CDS10658 321 + 0.551402
ybbA SubName: Full=YbbA protein; ColIb-P9 CDS11010 753 + 0.618858
ybcA SubName: Full=YbcA protein; ColIb-P9 CDS12167 1059 + 0.545798
ybeA SubName: Full=YbeA protein; ColIb-P9 CDS14269 210 + 0.652381
ybeB SubName: Full=YbeB protein; ColIb-P9 CDS14609 882 + 0.577098
ybfA SubName: Full=YbfA protein; ColIb-P9 CDS15961 453 + 0.567329
ybhA SubName: Full=YbhA protein; ColIb-P9 CDS17341 678 + 0.423304
ybiA SubName: Full=YbiA protein; ColIb-P9 CDS18105 309 + 0.446602
yccA SubName: Full=YccA protein; ColIb-P9 CDS22285 270 + 0.625926
yccB SubName: Full=YccB protein; ColIb-P9 CDS22568 927 + 0.545847
ycdA SubName: Full=YcdA protein; ColIb-P9 CDS23491 312 + 0.628205
ycdB SubName: Full=YcdB protein; ColIb-P9 CDS23879 684 + 0.554094
yceA SubName: Full=YceA protein; ColIb-P9 CDS24563 222 + 0.531532
yceB SubName: Full=YceB protein; ColIb-P9 CDS24796 435 + 0.565517
ycfA SubName: Full=YcfA protein; ColIb-P9 CDS25281 771 + 0.607004
ycgA SubName: Full=YcgA protein; ColIb-P9 CDS26026 471 + 0.619958
ycgB SubName: Full=YcgB protein; ColIb-P9 CDS26469 426 + 0.532864
ycgC SubName: Full=YcgC protein; ColIb-P9 CDS26941 423 + 0.565012
ychA SubName: Full=YchA protein; ColIb-P9 CDS27622 348 + 0.655172
ycjA SubName: Full=YcjA protein; ColIb-P9 CDS29108 2040 + 0.588726
ydcA transposaseSubName: Full=Transposase; ColIb-P9 CDS32476 1182 + 0.485618
yddA SubName: Full=YddA protein; ColIb-P9 CDS33714 471 + 0.626327
ydfA SubName: Full=YdfA protein; ColIb-P9 CDS35334 435 + 0.581609
ydfB SubName: Full=YdfB protein; ColIb-P9 CDS35860 267 + 0.58427
ydgA SubName: Full=YdgA protein; ColIb-P9 CDS36191 942 + 0.538217
ydhA SubName: Full=YdhA protein; ColIb-P9 CDS37766 336 + 0.592262
ydiA SubName: Full=YdiA protein; ColIb-P9 CDS38226 849 + 0.51119