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2024-06-01 09:15:21

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 110

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
ccmD cytochrome c biogenesis proteinRecName: Full=Heme exporter protein D; AltName: Full=Cytochrome c-type biogenesis protein CcmD; chromosome CDS2298711 210 - 0.571429
clpP proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteasesRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Caseinolytic protease; AltName: Full=Endopeptidase Clp; AltName: Full=Heat shock protein F21.5; AltName: Full=Protease Ti; Flags: Precursor; chromosome CDS455901 624 + 0.511218
cpxP periplasmic protein combats stressRecName: Full=Periplasmic protein CpxP; Flags: Precursor; chromosome CDS3530361 501 - 0.500998
cusC copper/silver efflux system, outer membrane componentRecName: Full=Cation efflux system protein CusC; Flags: Precursor; chromosome CDS594823 1374 + 0.512373
ecpD predicted periplasmic pilin chaperoneRecName: Full=Probable fimbrial chaperone YadV; Flags: Precursor; chromosome CDS155461 741 - 0.443995
exbB membrane spanning protein in TonB-ExbB-ExbD complexRecName: Full=Biopolymer transport protein ExbB; chromosome CDS3149906 735 - 0.530612
exbD membrane spanning protein in TonB-ExbB-ExbD complexRecName: Full=Biopolymer transport protein ExbD; chromosome CDS3149474 426 - 0.502347
ffh Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; Short=Ffh; AltName: Full=p48; chromosome CDS2745090 1362 - 0.54185
fimA major type 1 subunit fimbrinRecName: Full=Type-1 fimbrial protein, A chain; AltName: Full=Type-1A pilin; Flags: Precursor; chromosome CDS4547795 549 + 0.517304
fimC chaperone, periplasmicRecName: Full=Chaperone protein FimC; Flags: Precursor; chromosome CDS4548984 726 + 0.444904
fimD outer membrane usher protein, type 1 fimbrial synthesisRecName: Full=Outer membrane usher protein FimD; Flags: Precursor; chromosome CDS4549776 2637 + 0.486159
fimF minor component of type 1 fimbriaeRecName: Full=Protein FimF; Flags: Precursor; chromosome CDS4552422 531 + 0.495292
fimG minor component of type 1 fimbriaeRecName: Full=Protein FimG; Flags: Precursor; chromosome CDS4552965 504 + 0.52381
flgM anti-sigma factor for FliA (sigma 28)RecName: Full=Negative regulator of flagellin synthesis; AltName: Full=Anti-sigma-28 factor; chromosome CDS1131412 294 - 0.527211
flgN export chaperone for FlgK and FlgLRecName: Full=Flagella synthesis protein FlgN; chromosome CDS1130991 417 - 0.482014
flhA predicted flagellar export pore protein chromosome CDS1964686 2079 - 0.548822
flhB predicted flagellar export pore proteinRecName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS1966757 1149 - 0.549173
fliE flagellar basal-body componentRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2014837 315 - 0.539683
fliF flagellar basal-body MS-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2015366 1659 + 0.546112
fliI flagellum-specific ATP synthaseRecName: Full=Flagellum-specific ATP synthase; EC=3.6.3.14; chromosome CDS2018691 1374 + 0.585881
fliJ flagellar proteinRecName: Full=Flagellar FliJ protein; chromosome CDS2020083 444 + 0.515766
fliN flagellar motor switching and energizing componentRecName: Full=Flagellar motor switch protein FliN; chromosome CDS2023225 414 + 0.550725
fliP flagellar biosynthesis proteinRecName: Full=Flagellar biosynthetic protein FliP; Flags: Precursor; chromosome CDS2024006 738 + 0.531165
fliQ flagellar biosynthesis proteinRecName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS2024753 270 + 0.503704
fliR flagellar export pore proteinRecName: Full=Flagellar biosynthetic protein FliR; chromosome CDS2025030 786 + 0.474555
fliS flagellar protein potentiates polymerizationRecName: Full=Flagellar protein FliS; chromosome CDS2007440 411 + 0.498783
flu antigen 43 (Ag43) phase-variable biofilm formation autotransporterRecName: Full=Antigen 43; Short=AG43; AltName: Full=Fluffing protein; Contains: RecName: Full=Antigen 43 alpha chain; Contains: RecName: Full=Antigen 43 beta chain; Flags: Precursor; chromosome CDS2073676 3120 + 0.582372
ftsY fused Signal Recognition Particle (SRP) receptorRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS4036172 1494 + 0.534806
gspC general secretory pathway component, crypticRecName: Full=Putative type II secretion system protein C; Short=T2SS protein C; AltName: Full=Putative general secretion pathway protein C; chromosome CDS4184023 816 - 0.42402
gspE general secretory pathway component, crypticRecName: Full=Putative type II secretion system protein E; Short=T2SS protein E; AltName: Full=Putative general secretion pathway protein E; AltName: Full=Type II traffic warden ATPase; chromosome CDS4180596 1482 - 0.524966
gspF general secretory pathway component, crypticRecName: Full=Putative type II secretion system protein F; Short=T2SS protein F; AltName: Full=General secretion pathway protein F; AltName: Full=Protein transport protein HofF; chromosome CDS4179403 1197 - 0.510443
gspG pseudopilin, cryptic, general secretion pathwayRecName: Full=Putative type II secretion system protein G; Short=T2SS protein G; AltName: Full=Protein transport protein HofG; AltName: Full=Putative general secretion pathway protein G; Flags: Precursor; chromosome CDS4178956 438 - 0.486301
gspH predicted general secretory pathway component, crypticRecName: Full=Putative type II secretion system protein H; Short=T2SS protein H; AltName: Full=Protein transport protein HofH; AltName: Full=Putative general secretion pathway protein H; Flags: Precursor; chromosome CDS4178439 510 - 0.560784
gspJ predicted general secretory pathway component, crypticRecName: Full=Putative type II secretion system protein J; Short=T2SS protein J; AltName: Full=Putative general secretion pathway protein J; Flags: Precursor; chromosome CDS4177485 588 - 0.503401
gspK general secretory pathway component, crypticRecName: Full=Putative type II secretion system protein K; Short=T2SS protein K; AltName: Full=Putative general secretion pathway protein K; chromosome CDS4176509 984 - 0.502033
gspO bifunctional prepilin leader peptidase and methylaseRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; EC=3.4.23.43; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase; EC=2.1.1.-; chromosome CDS4174196 678 - 0.504425
hofB conserved hypothetical protein with nucleoside triphosphate hydrolase domainRecName: Full=Protein transport protein HofB homolog; chromosome CDS115714 1386 - 0.534632
hofC assembly protein in type IV pilin biogenesis, transmembrane proteinRecName: Full=Protein transport protein HofC homolog; chromosome CDS114522 1203 - 0.519534
hofQ predicted fimbrial transporterRecName: Full=Putative DNA transport protein HofQ; Flags: Precursor; chromosome CDS4119713 1239 + 0.544794
htrE predicted outer membrane usher proteinRecName: Full=Outer membrane usher protein HtrE; AltName: Full=Heat shock protein E; Flags: Precursor; chromosome CDS152829 2598 - 0.43341
lepB leader peptidaseRecName: Full=Signal peptidase I; Short=SPase I; EC=3.4.21.89; AltName: Full=Leader peptidase I; chromosome CDS2702991 975 - 0.52
lspA prolipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS25207 495 + 0.535354
marC predicted transporterRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1619957 666 - 0.510511
nfrB bacteriophage N4 receptor, inner membrane subunitRecName: Full=Bacteriophage N4 adsorption protein B; chromosome CDS590164 2238 - 0.525022
ppdA conserved hypothetical proteinRecName: Full=Prepilin peptidase-dependent protein A; Flags: Precursor; chromosome CDS2962363 471 - 0.541401
ppdB conserved hypothetical proteinRecName: Full=Prepilin peptidase-dependent protein B; Flags: Precursor; chromosome CDS2961809 564 - 0.52305
ppdD predicted major pilin subunitRecName: Full=Prepilin peptidase-dependent protein D; Flags: Precursor; chromosome CDS117109 441 - 0.530612
secA preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core transloconRecName: Full=Protein translocase subunit SecA; chromosome CDS108279 2706 + 0.524021
secB protein export chaperoneRecName: Full=Protein-export protein SecB; chromosome CDS3856287 468 + 0.508547
secD SecYEG protein translocase auxillary subunitRecName: Full=Protein translocase subunit SecD; chromosome CDS426871 1848 + 0.531926
secE preprotein translocase membrane subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS3458940 384 - 0.549479
secF SecYEG protein translocase auxillary subunitRecName: Full=Protein translocase subunit SecF; chromosome CDS428729 972 + 0.516461
secG preprotein translocase membrane subunitRecName: Full=Protein-export membrane protein SecG; AltName: Full=P12; AltName: Full=Preprotein translocase band 1 subunit; chromosome CDS3322028 333 - 0.495495
secY preprotein translocase membrane subunitRecName: Full=Protein translocase subunit SecY; chromosome CDS4196319 1332 + 0.496997
sfmA predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein SfmA; AltName: Full=Type-1A pilin; Flags: Precursor; chromosome CDS557435 543 + 0.445672
sfmC pilin chaperone, periplasmicRecName: Full=Probable fimbrial chaperone SfmC; Flags: Precursor; chromosome CDS558197 693 + 0.425685
sfmD predicted outer membrane export usher proteinRecName: Full=Outer membrane usher protein SfmD; Flags: Precursor; chromosome CDS558920 2604 + 0.478111
sfmF predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein SfmF; Flags: Precursor; chromosome CDS562553 516 + 0.5
smf conserved hypothetical proteinRecName: Full=Protein smf; chromosome CDS4206856 1125 + 0.509333
sohB predicted inner membrane peptidaseRecName: Full=Probable protease SohB; EC=3.4.21.-; chromosome CDS1331046 1050 + 0.505714
sppA protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1850551 1857 + 0.517501
spy envelope stress induced periplasmic proteinRecName: Full=Spheroplast protein Y; Flags: Precursor; chromosome CDS1826854 486 - 0.50823
tatA TatABCE protein translocation system subunitRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS3614467 270 - 0.455556
tatB TatABCE protein translocation system subunitRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS3613948 516 - 0.554264
tatC TatABCE protein translocation system subunitRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS3613169 777 - 0.516088
tatE TatABCE protein translocation system subunitRecName: Full=Sec-independent protein translocase protein TatE; chromosome CDS659369 204 + 0.5
tolB periplasmic proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS778162 1293 + 0.531322
tolQ membrane spanning protein in TolA-TolQ-TolR complexRecName: Full=Protein TolQ; chromosome CDS775575 693 + 0.50505
tolR membrane spanning protein in TolA-TolQ-TolR complexRecName: Full=Protein TolR; chromosome CDS776271 429 + 0.517483
yadK predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YadK; Flags: Precursor; chromosome CDS151003 597 - 0.413735
yadN predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YadN; Flags: Precursor; chromosome CDS156299 585 - 0.447863
yagZ conserved hypothetical proteinRecName: Full=Common pilus major fimbrillin subunit EcpA; AltName: Full=MatB fimbrillin; Flags: Precursor; chromosome CDS309308 588 - 0.528912
yajC SecYEG protein translocase auxillary subunitRecName: Full=UPF0092 membrane protein YajC; chromosome CDS426511 333 + 0.495495
ybbJ conserved inner membrane proteinRecName: Full=Inner membrane protein YbbJ; chromosome CDS513625 456 - 0.574561
ybgD predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YbgD; Flags: Precursor; chromosome CDS752651 567 - 0.467372
ybgP predicted assembly proteinRecName: Full=Uncharacterized fimbrial chaperone YbgP; Flags: Precursor; chromosome CDS749401 729 - 0.477366
ycbR predicted periplasmic pilin chaperoneRecName: Full=Probable fimbrial chaperone protein ElfD; Flags: Precursor; chromosome CDS998912 702 + 0.450142
ycbS predicted outer membrane usher proteinRecName: Full=Probable outer membrane usher protein ElfC; Flags: Precursor; chromosome CDS999638 2601 + 0.478662
ycbU predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YcbU; Flags: Precursor; chromosome CDS1003311 543 + 0.471455
ycgV predicted adhesinRecName: Full=Uncharacterized protein YcgV; chromosome CDS1254662 2868 - 0.497908
ychE predicted inner membrane proteinRecName: Full=UPF0056 membrane protein YhcE; chromosome CDS1300175 648 + 0.478395
ydeK predicted lipoproteinRecName: Full=Uncharacterized lipoprotein YdeK; AltName: Full=ORFT; Flags: Precursor; chromosome CDS1595823 3978 - 0.493213
ydeR predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YdeR; Flags: Precursor; chromosome CDS1589507 504 - 0.448413
ydeS predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YdeS; Flags: Precursor; chromosome CDS1590023 531 - 0.448211
ydeT hypothetical proteinRecName: Full=Putative uncharacterized protein ydet; chromosome CDS1590567 1149 - 0.445605
ydhQ conserved hypothetical proteinRecName: Full=Uncharacterized protein YdhQ; chromosome CDS1746585 1257 - 0.513922
yehB predicted outer membrane proteinRecName: Full=Outer membrane usher protein YehB; Flags: Precursor; chromosome CDS2191764 2481 - 0.455058
yehC predicted periplasmic pilin chaperoneRecName: Full=Probable fimbrial chaperone YehC; Flags: Precursor; chromosome CDS2194260 720 - 0.393056
yehD predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YehD; Flags: Precursor; chromosome CDS2195014 543 - 0.405157
yejO predicted autotransporter outer membrane proteinRecName: Full=Putative uncharacterized outer membrane protein YejO; Flags: Precursor; chromosome CDS2289724 2511 - 0.483473
yfaL adhesinRecName: Full=Uncharacterized protein YfaL; Flags: Precursor; chromosome CDS2345087 3753 - 0.513722
yfcP predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YfcP; Flags: Precursor; chromosome CDS2455497 540 - 0.487037
yfcS predicted periplasmic pilus chaperoneRecName: Full=Probable fimbrial chaperone YfcS; Flags: Precursor; chromosome CDS2457030 753 - 0.50996
yfcT predicted outer membrane export usher proteinRecName: Full=Putative outer membrane usher protein YfcU; Flags: Precursor; chromosome CDS2457802 897 - 0.532887
yfcU predicted export usher proteinRecName: Full=Putative outer membrane usher protein YfcU; Flags: Precursor; chromosome CDS2458711 1737 - 0.510075
yghD predicted secretion pathway M-type protein, membrane anchoredRecName: Full=Putative type II secretion system M-type protein YghD; Short=Putative T2SS M-type protein YghD; AltName: Full=Putative extracytoplasmic function protein C; AltName: Full=Putative general secretion pathway M-type protein YghD; chromosome CDS3109246 537 - 0.532588
yghF predicted secretion pathway protein, C-type proteinRecName: Full=Putative type II secretion system C-type protein YghF; AltName: Full=Putative general secretion pathway C-type protein YghF; Flags: Precursor; chromosome CDS3110710 867 - 0.512111
ygiL predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YgiL; Flags: Precursor; chromosome CDS3184070 552 + 0.436594
yhcA predicted periplasmic chaperone proteinRecName: Full=Uncharacterized fimbrial chaperone YhcA; Flags: Precursor; chromosome CDS3361967 675 + 0.416296
yhcD predicted outer membrane proteinRecName: Full=Uncharacterized outer membrane usher protein YhcD; Flags: Precursor; chromosome CDS3362662 2382 + 0.45508
yhgN predicted antibiotic transporterRecName: Full=UPF0056 inner membrane protein YhgN; chromosome CDS4064751 594 - 0.5
yidC cytoplasmic insertase into membrane protein, Sec systemRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Inner membrane protein YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Oxa1Ec; chromosome CDS3753693 1647 - 0.536733
yjcP predicted outer membrane factor of efflux pumpRecName: Full=Multidrug resistance outer membrane protein MdtP; Flags: Precursor; chromosome CDS4303043 1467 - 0.557601
yqiG predicted outer membrane usher proteinRecName: Full=Putative outer membrane usher protein YqiG; Flags: Precursor; chromosome CDS3186056 2466 + 0.422141
yraH predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YraH; Flags: Precursor; chromosome CDS3287281 585 + 0.451282
yraI predicted periplasmic pilin chaperoneRecName: Full=Probable fimbrial chaperone YraI; Flags: Precursor; chromosome CDS3287945 696 + 0.442529
yraJ predicted outer membrane proteinRecName: Full=Outer membrane usher protein YraJ; Flags: Precursor; chromosome CDS3288669 2517 + 0.475963
yraK predicted fimbrial-like adhesin proteinRecName: Full=Uncharacterized fimbrial-like protein YraK; Flags: Precursor; chromosome CDS3291196 1092 + 0.478938
yrfC predicted fimbrial assembly proteinRecName: Full=Putative DNA utilization protein HofN; chromosome CDS4118444 540 + 0.553704
zraP Zn-binding periplasmic proteinRecName: Full=Zinc resistance-associated protein; Flags: Precursor; chromosome CDS3434993 426 + 0.535211