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2024-06-01 18:36:35

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 116

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Pseudomonas putida KT2440, KT2440
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PP4057 outer membrane autotransporter barrel domain proteinSubName: Full=Outer membrane autotransporter barrel domain protein; chromosome CDS4576619 1170 + 0.622222
NA PP3045 ClpP protease, putativeSubName: Full=ClpP protease, putative; chromosome CDS3429780 1164 + 0.610825
NA PP0575 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS673636 471 - 0.613588
NA PP1993 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2259410 2736 + 0.656433
NA PP4825 membrane protein, MarC familySubName: Full=Membrane protein, MarC family; chromosome CDS5489516 597 + 0.60804
NA PP1798 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS2020045 1416 + 0.596751
NA PP1880 outer membrane autotransporterSubName: Full=Outer membrane autotransporter; chromosome CDS2104921 2193 - 0.642955
NA PP1449 surface colonization protein, putativeSubName: Full=Surface colonization protein, putative; chromosome CDS1652238 4527 - 0.636183
NA PP1450 activation/secretion protein, TPS family, putativeSubName: Full=Activation/secretion protein, TPS family, putative; chromosome CDS1656792 1698 - 0.661955
NA PP3483 type II secretion system protein, putativeSubName: Full=Type II secretion system protein, putative; chromosome CDS3946249 1797 - 0.648303
NA PP0805 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS925187 1437 - 0.679193
NA PP5081 type IV pili biogenesis proteinSubName: Full=Type IV pili biogenesis protein; chromosome CDS5802772 1017 - 0.647984
NA PP3476 secretion protein, putativeSubName: Full=Secretion protein, putative; chromosome CDS3941168 387 - 0.638243
NA PP3299 outer membrane lipoproteinSubName: Full=Outer membrane lipoprotein; chromosome CDS3731774 1464 - 0.584016
NA PP5190 type II secretion system proteinSubName: Full=Type II secretion system protein; chromosome CDS5919406 1674 + 0.664875
NA PP1898 MotA/TolQ/ExbB proton channel family proteinSubName: Full=MotA/TolQ/ExbB proton channel family protein; chromosome CDS2142547 675 + 0.613333
NA PP3922 sohB protein, peptidase U7 familySubName: Full=SohB protein, peptidase U7 family; chromosome CDS4427744 1020 - 0.603922
NA PP4211 ABC export system, outer membrane proteinSubName: Full=ABC export system, outer membrane protein; chromosome CDS4756728 1413 + 0.665251
NA PP1899 ExbD/TolR family proteinSubName: Full=ExbD/TolR family protein; chromosome CDS2143218 435 + 0.648276
NA PP5083 type IV pili biogenesis protein PilM, putativeSubName: Full=Type IV pili biogenesis protein PilM, putative; chromosome CDS5804318 882 - 0.642857
NA PP4923 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS5596495 1434 + 0.628312
NA PP3267 clp protease, putativeSubName: Full=Clp protease, putative; chromosome CDS3701568 597 + 0.571189
NA PP2558 outer membrane efflux protein, putativeSubName: Full=Outer membrane efflux protein, putative; chromosome CDS2906021 1359 - 0.635762
NA PP3069 outer membrane autotransporterSubName: Full=Outer membrane autotransporter; chromosome CDS3450966 2478 - 0.66021
NA PP1273 multidrug efflux MFS outer membrane protein, putativeSubName: Full=Multidrug efflux MFS outer membrane protein, putative; chromosome CDS1454465 1455 + 0.658419
NA PP1888 fimbrial proteinSubName: Full=Fimbrial protein; chromosome CDS2128549 1095 - 0.6
NA PP3582 RND efflux transporter, outer membrane proteinSubName: Full=RND efflux transporter, outer membrane protein; chromosome CDS4064466 1491 - 0.647217
NA PP4833 SURF1 domain proteinSubName: Full=SURF1 domain protein; chromosome CDS5500074 432 + 0.641204
NA PP2408 cobalt-zinc-cadmium resistance protein CzcC, putativeSubName: Full=Cobalt-zinc-cadmium resistance protein CzcC, putative; chromosome CDS2751171 1278 + 0.673709
NA PP0715 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS830725 1515 + 0.653465
NA PP5385 heavy metal RND efflux outer membrane protein, CzcC familySubName: Full=Heavy metal RND efflux outer membrane protein, CzcC family; chromosome CDS6137536 1254 + 0.638756
NA PP1201 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1376338 1293 - 0.643465
NA PP3478 secretion protein, putativeSubName: Full=Secretion protein, putative; chromosome CDS3942024 1866 - 0.647374
NA PP1114 SEC-C domain proteinSubName: Full=SEC-C domain protein; chromosome CDS1273375 198 - 0.621212
NA PP3448 bacteriophage receptor protein, putativeSubName: Full=Bacteriophage receptor protein, putative; chromosome CDS3905513 2175 + 0.625287
NA PP1908 peptidase, putativeSubName: Full=Peptidase, putative; chromosome CDS2152955 990 + 0.618182
NA PP2857 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3260238 579 - 0.61658
NA PP1263 fusaric acid resistance protein, putativeSubName: Full=Fusaric acid resistance protein, putative; chromosome CDS1444375 1530 + 0.655556
NA PP2069 multidrug efflux MFS outer membrane protein, putativeSubName: Full=Multidrug efflux MFS outer membrane protein, putative; chromosome CDS2354586 1422 - 0.675106
NA PP3878 phage minor capsid protein C, putativeSubName: Full=Phage minor capsid protein C, putative; chromosome CDS4398916 972 - 0.599794
NA PP3398 curli fiber surface-exposed nucleator CsgB, putativeSubName: Full=Curli fiber surface-exposed nucleator CsgB, putative; chromosome CDS3850516 474 + 0.630802
NA PP4115 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4652226 804 + 0.598259
NA PP0573 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS670944 1725 + 0.64058
NA PP1040 Sec-independent protein translocase TatB, putativeSubName: Full=Sec-independent protein translocase TatB, putative; chromosome CDS1189808 291 - 0.67354
NA PP0806 surface adhesion protein, putativeSubName: Full=Surface adhesion protein, putative; chromosome CDS926687 18933 - 0.663762
NA PP0607 type IV pili biogenesis protein FimT, putativeSubName: Full=Type IV pili biogenesis protein FimT, putative; chromosome CDS715009 483 - 0.623188
NA PP4396 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4987038 468 + 0.613248
NA PP5077 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5798264 1590 - 0.637736
NA PP1890 type 1 pili chaperone protein FimCSubName: Full=Type 1 pili chaperone protein FimC; chromosome CDS2132229 780 - 0.546154
NA PP3783 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4310287 936 + 0.595085
PP0045 cobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC familySubName: Full=Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC family; chromosome CDS50718 1272 - 0.601415
PP0069 smf proteinSubName: Full=Smf protein; chromosome CDS79246 1098 + 0.661202
PP0168 surface adhesion protein, putativeSubName: Full=Surface adhesion protein, putative; chromosome CDS194494 26049 + 0.610273
PP0179 efflux transporter, outer membrane protein, putativeSubName: Full=Efflux transporter, outer membrane protein, putative; chromosome CDS230339 1419 + 0.650458
ccmD PP4324 cytochrome c-type biogenesis protein CcmDSubName: Full=Cytochrome c-type biogenesis protein CcmD; chromosome CDS4915146 177 - 0.621469
clpP PP2300 ATP-dependent Clp protease, proteolytic subunit ClpPRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS2628336 642 + 0.604361
csuC PP2361 type 1 pili usher pathway chaperone CsuCSubName: Full=Type 1 pili usher pathway chaperone CsuC; chromosome CDS2692900 795 + 0.661635
csuD PP2362 type 1 pili usher protein CsuDSubName: Full=Type 1 pili usher protein CsuD; chromosome CDS2693707 2394 + 0.63868
exbB PP5306 ferric siderophore transport system protein ExbBSubName: Full=Ferric siderophore transport system protein ExbB; chromosome CDS6053648 963 + 0.646937
exbD PP5307 ferric siderophore transport system, inner membrane protein ExbDSubName: Full=Ferric siderophore transport system, inner membrane protein ExbD; chromosome CDS6054614 429 + 0.587413
ffh PP1461 signal recognition particle protein FfhRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS1666755 1617 + 0.627087
fimD PP1889 type 1 pili subunit FimDSubName: Full=Type 1 pili subunit FimD; chromosome CDS2129700 2496 - 0.629006
fimI PP1891 type 1 pili subunit FimISubName: Full=Type 1 pili subunit FimI; chromosome CDS2133062 540 - 0.559259
flgM PP4395 negative regulator of flagellin synthesis FlgMSubName: Full=Negative regulator of flagellin synthesis FlgM; chromosome CDS4986674 315 + 0.638095
flhA PP4344 flagellar biosynthetic protein FlhASubName: Full=Flagellar biosynthetic protein FlhA; chromosome CDS4934459 2130 - 0.623474
flhB PP4352 flagellar biosynthetic protein FlhBSubName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS4945437 1143 - 0.618548
fliE PP4370 flagellar hook-basal body complex protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS4960485 333 - 0.600601
fliF PP4369 flagellar basal-body M-ring protein FliFRecName: Full=Flagellar M-ring protein; chromosome CDS4958691 1779 - 0.653176
fliH PP4367 flagellar assembly protein FliHSubName: Full=Flagellar assembly protein FliH; chromosome CDS4956725 792 - 0.633838
fliI PP4366 flagellum-specific ATP synthase FliISubName: Full=Flagellum-specific ATP synthase FliI; chromosome CDS4955380 1374 - 0.648472
fliJ PP4365 flagellar protein FliJSubName: Full=Flagellar protein FliJ; chromosome CDS4954921 453 - 0.655629
fliN PP4357 flagellar motor switch protein FliNSubName: Full=Flagellar motor switch protein FliN; chromosome CDS4948859 486 - 0.623457
fliP PP4355 flagellar biosynthetic protein FliPSubName: Full=Flagellar biosynthetic protein FliP; chromosome CDS4947657 756 - 0.624339
fliQ PP4354 flagellar biosynthetic protein FliQSubName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS4947366 270 - 0.603704
fliR PP4353 flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS4946582 777 - 0.612613
fliS PP4375 flagellar biosynthetis protein FliSSubName: Full=Flagellar biosynthetis protein FliS; chromosome CDS4965839 396 - 0.583333
ftsY PP5111 signal recognition particle receptor FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS5830650 1485 - 0.658586
lepB PP1432 signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS1633048 855 + 0.60117
lspA PP0604 lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS713010 531 + 0.627119
oprJ PP2819 outer membrane protein OprJSubName: Full=Outer membrane protein OprJ; chromosome CDS3217208 1407 + 0.683013
oprN PP3427 multidrug efflux RND outer membrane protein OprNSubName: Full=Multidrug efflux RND outer membrane protein OprN; chromosome CDS3881339 1416 + 0.67161
pilA PP0634 type IV pili prepilin PilASubName: Full=Type IV pili prepilin PilA; chromosome CDS740841 411 + 0.644769
pilC PP0633 type IV pili biogenesis protein PilCSubName: Full=Type IV pili biogenesis protein PilC; chromosome CDS739416 1209 - 0.652605
pilD PP0632 type IV pili prepilin peptidase PilD/XcpARecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome CDS738547 867 - 0.629758
pilE PP0611 type IV pili biogenesis protein PilESubName: Full=Type IV pili biogenesis protein PilE; chromosome CDS716887 390 + 0.646154
pilF PP0851 type IV pili biogenesis protein PilFSubName: Full=Type IV pili biogenesis protein PilF; chromosome CDS985237 768 + 0.608073
pilN PP5082 type IV pili biogenesis protein PilNSubName: Full=Type IV pili biogenesis protein PilN; chromosome CDS5803785 537 - 0.635009
pilQ PP5080 type IV pili biogenesis protein PilQSubName: Full=Type IV pili biogenesis protein PilQ; chromosome CDS5801586 1263 - 0.607284
pilT PP5093 type IV pili twitching motility protein PilTSubName: Full=Type IV pili twitching motility protein PilT; chromosome CDS5816934 1011 - 0.657765
secA PP1345 preprotein translocase, SecA subunitRecName: Full=Protein translocase subunit SecA; chromosome CDS1531986 2820 + 0.603546
secB PP5053 protein-transport protein SecBRecName: Full=Protein-export protein SecB; chromosome CDS5759538 486 - 0.59465
secD PP0835 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS971707 1863 + 0.6146
secE preprotein translocase, SecE subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS534102 369 + 0.558266
secF PP0836 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS973580 909 + 0.59516
secY Sec-dependent secretion protein SecYRecName: Full=Protein translocase subunit SecY; chromosome CDS559885 1332 + 0.559309
tatA-1 PP1041 Sec-independent protein translocase TatARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS1190098 234 - 0.598291
tatA-2 PP5016 Sec-independent protein translocase TatARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS5715049 273 + 0.622711
tatB PP5017 Sec-independent protein translocase TatBRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS5715325 378 + 0.671958
tatC-1 PP1039 Sec-independent periplasmic protein translocator TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS1189050 762 - 0.61811
tatC-2 PP5018 Sec-independent periplasmic protein translocator TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS5715699 789 + 0.599493
tolB PP1222 tolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS1398166 1302 + 0.599846
tolC PP4519 agglutination proteinSubName: Full=Agglutination protein; chromosome CDS5132917 1359 + 0.61663
tolQ PP1219 biopolymer transport protein TolQSubName: Full=Biopolymer transport protein TolQ; chromosome CDS1395889 696 + 0.627874
tolR PP1220 biopolymer transport protein TolRSubName: Full=Biopolymer transport protein TolR; chromosome CDS1396599 453 + 0.598234
ttgC PP1384 multidrug/solvent RND outer membrane protein TtgCRecName: Full=Probable efflux pump outer membrane protein TtgC; Flags: Precursor; chromosome CDS1576789 1455 - 0.642612
xcpQ PP1046 type II secretion pathway protein XcpQSubName: Full=Type II secretion pathway protein XcpQ; chromosome CDS1195938 1755 + 0.646724
xcpR PP1047 type II secretion pathway protein XcpRSubName: Full=Type II secretion pathway protein XcpR; chromosome CDS1197689 1452 + 0.662534
xcpS-1 PP1048 type II secretion pathway protein XcpSSubName: Full=Type II secretion pathway protein XcpS; chromosome CDS1199144 1203 + 0.67581
xcpS-2 PP3424 type II secretion pathway protein XcpSSubName: Full=Type II secretion pathway protein XcpS; chromosome CDS3875506 1212 + 0.668317
xcpT-1 PP1049 type II secretion pathway protein XcpTSubName: Full=Type II secretion pathway protein XcpT; chromosome CDS1200343 456 + 0.638158
xcpT-2 PP3423 type II secretion pathway protein XcpTSubName: Full=Type II secretion pathway protein XcpT; chromosome CDS3875006 510 + 0.645098
xcpU PP1050 type II secretion pathway protein XcpUSubName: Full=Type II secretion pathway protein XcpU; chromosome CDS1200802 432 + 0.710648
xcpW PP1052 type II secretion pathway protein XcpWSubName: Full=Type II secretion pathway protein XcpW; chromosome CDS1201595 591 + 0.671743
xcpX PP1042 type II secretion pathway protein XcpXRecName: Full=Type II secretion system protein K; chromosome CDS1190477 966 + 0.663561
yajC PP0834 preprotein translocase, YajC subunitSubName: Full=Preprotein translocase, YajC subunit; chromosome CDS971308 336 + 0.583333
yidC inner membrane protein, 60 kDaRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS6471 1683 - 0.585859