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2024-06-09 23:15:42

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 111

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Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA b1505 putative outer membrane protein chromosome CDS1586877 1149 - 0.445605
NA b2337 putative outer membrane protein chromosome CDS2450378 897 - 0.532887
ccmD b2198 heme exporter protein CRecName: Full=Heme exporter protein D; AltName: Full=Cytochrome c-type biogenesis protein CcmD; chromosome CDS2293399 210 - 0.571429
clpP b0437 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Caseinolytic protease; AltName: Full=Endopeptidase Clp; AltName: Full=Heat shock protein F21.5; AltName: Full=Protease Ti; Flags: Precursor; chromosome CDS455901 624 + 0.511218
cpxP b4484 periplasmic repressor of cpx regulon by interaction with CpxARecName: Full=Periplasmic protein CpxP; Flags: Precursor; chromosome CDS4103843 501 + 0.500998
cusC b0572 putative outer membrane protein involved in copper transportRecName: Full=Cation efflux system protein CusC; Flags: Precursor; chromosome CDS594823 1374 + 0.512373
ecpD b0140 probable pilin chaperone similar to PapDRecName: Full=Probable fimbrial chaperone YadV; Flags: Precursor; chromosome CDS155461 741 - 0.443995
exbB b3006 uptake of enterochelin; tonB-dependent uptake of B colicinsRecName: Full=Biopolymer transport protein ExbB; chromosome CDS3149272 735 - 0.530612
exbD b3005 uptake of enterochelin; tonB-dependent uptake of B colicinsRecName: Full=Biopolymer transport protein ExbD; chromosome CDS3148840 426 - 0.502347
ffh b2610 GTP-binding export factor binds to signal sequence, GTP and RNARecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; Short=Ffh; AltName: Full=p48; chromosome CDS2744456 1362 - 0.54185
fimA b4314 major type 1 subunit fimbrin (pilin)RecName: Full=Type-1 fimbrial protein, A chain; AltName: Full=Type-1A pilin; Flags: Precursor; chromosome CDS4541138 549 + 0.517304
fimC b4316 periplasmic chaperone, required for type 1 fimbriaeRecName: Full=Chaperone protein FimC; Flags: Precursor; chromosome CDS4542327 726 + 0.444904
fimD b4317 outer membrane protein; export and assembly of type 1 fimbriae, interruptedRecName: Full=Outer membrane usher protein FimD; Flags: Precursor; chromosome CDS4543119 2637 + 0.486159
fimF b4318 fimbrial morphologyRecName: Full=Protein FimF; Flags: Precursor; chromosome CDS4545765 531 + 0.495292
fimG b4319 fimbrial morphologyRecName: Full=Protein FimG; Flags: Precursor; chromosome CDS4546308 504 + 0.52381
flgM b1071 anti-FliA (anti-sigma) factor; also known as RflB proteinRecName: Full=Negative regulator of flagellin synthesis; AltName: Full=Anti-sigma-28 factor; chromosome CDS1129058 294 - 0.527211
flgN b1070 protein of flagellar biosynthesisRecName: Full=Flagella synthesis protein FlgN; chromosome CDS1128637 417 - 0.482014
flhA b1879 flagellar biosynthesis; possible export of flagellar proteinsRecName: Full=Flagellar biosynthesis protein FlhA; chromosome CDS1960996 2079 - 0.548822
flhB b1880 putative part of export apparatus for flagellar proteinsRecName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS1963067 1149 - 0.549173
fliE b1937 flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junctionRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2010724 315 - 0.539683
fliF b1938 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2011253 1659 + 0.546112
fliI b1941 flagellum-specific ATP synthaseRecName: Full=Flagellum-specific ATP synthase; EC=3.6.3.14; chromosome CDS2014578 1374 + 0.585881
fliJ b1942 flagellar fliJ proteinRecName: Full=Flagellar FliJ protein; chromosome CDS2015970 444 + 0.515766
fliN b1946 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its directionRecName: Full=Flagellar motor switch protein FliN; chromosome CDS2019112 414 + 0.550725
fliP b1948 flagellar biosynthesisRecName: Full=Flagellar biosynthetic protein FliP; Flags: Precursor; chromosome CDS2019893 738 + 0.531165
fliQ b1949 flagellar biosynthesisRecName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS2020640 270 + 0.503704
fliR b1950 flagellar biosynthesisRecName: Full=Flagellar biosynthetic protein FliR; chromosome CDS2020917 786 + 0.474555
fliS b1925 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)RecName: Full=Flagellar protein FliS; chromosome CDS2003327 411 + 0.498783
flu b2000 antigen 43, phase-variable bipartite outer membrane fluffing proteinRecName: Full=Antigen 43; Short=AG43; AltName: Full=Fluffing protein; Contains: RecName: Full=Antigen 43 alpha chain; Contains: RecName: Full=Antigen 43 beta chain; Flags: Precursor; chromosome CDS2069563 3120 + 0.582372
ftsY b3464 cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS3600773 1494 - 0.534806
gspC b3324 putative export protein C for general secretion pathway (GSP)RecName: Full=Putative type II secretion system protein C; Short=T2SS protein C; AltName: Full=Putative general secretion pathway protein C; chromosome CDS3453600 816 + 0.42402
gspE b3326 putative export protein E for general secretion pathway (GSP); Type II traffic warden ATPaseRecName: Full=Putative type II secretion system protein E; Short=T2SS protein E; AltName: Full=Putative general secretion pathway protein E; AltName: Full=Type II traffic warden ATPase; chromosome CDS3456361 1482 + 0.524966
gspF b3327 putative export protein F for general secretion pathway (GSP)RecName: Full=Putative type II secretion system protein F; Short=T2SS protein F; AltName: Full=General secretion pathway protein F; AltName: Full=Protein transport protein HofF; chromosome CDS3457839 1197 + 0.510443
gspG b3328 putative export protein G for general secretion pathway (GSP); pilin-likeRecName: Full=Putative type II secretion system protein G; Short=T2SS protein G; AltName: Full=Protein transport protein HofG; AltName: Full=Putative general secretion pathway protein G; Flags: Precursor; chromosome CDS3459045 438 + 0.486301
gspH b3329 putative export protein H for general secretion pathway (GSP)RecName: Full=Putative type II secretion system protein H; Short=T2SS protein H; AltName: Full=Protein transport protein HofH; AltName: Full=Putative general secretion pathway protein H; Flags: Precursor; chromosome CDS3459490 510 + 0.560784
gspJ b3331 putative export protein J for general secretion pathway (GSP)RecName: Full=Putative type II secretion system protein J; Short=T2SS protein J; AltName: Full=Putative general secretion pathway protein J; Flags: Precursor; chromosome CDS3460366 588 + 0.503401
gspK b3332 putative export protein K for general secretion pathway (GSP)RecName: Full=Putative type II secretion system protein K; Short=T2SS protein K; AltName: Full=Putative general secretion pathway protein K; chromosome CDS3460946 984 + 0.502033
gspO b3335 bifunctional prepilin peptidase: leader peptidase; N-methyltransferase; part of general secretion pathway (GSP)RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; EC=3.4.23.43; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase; EC=2.1.1.-; chromosome CDS3463565 678 + 0.504425
hofB b0107 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakeRecName: Full=Protein transport protein HofB homolog; chromosome CDS115714 1386 - 0.534632
hofC b0106 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakeRecName: Full=Protein transport protein HofC homolog; chromosome CDS114522 1203 - 0.519534
hofQ b3391 putative transport porteinRecName: Full=Putative DNA transport protein HofQ; Flags: Precursor; chromosome CDS3517487 1239 - 0.544794
htrE b0139 probable outer membrane porin protein involved in fimbrial assemblyRecName: Full=Outer membrane usher protein HtrE; AltName: Full=Heat shock protein E; Flags: Precursor; chromosome CDS152829 2598 - 0.43341
lepB b2568 leader peptidase (signal peptidase I)RecName: Full=Signal peptidase I; Short=SPase I; EC=3.4.21.89; AltName: Full=Leader peptidase I; chromosome CDS2702357 975 - 0.52
lspA b0027 prolipoprotein signal peptidase (SPase II)RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS25207 495 + 0.535354
marC b1529 multiple antibiotic resistance proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1616267 666 - 0.510511
nfrB b0569 bacteriophage N4 receptor, subunit, inner membrane proteinRecName: Full=Bacteriophage N4 adsorption protein B; chromosome CDS590164 2238 - 0.525022
ppdA b2826 prepilin peptidase dependent protein ARecName: Full=Prepilin peptidase-dependent protein A; Flags: Precursor; chromosome CDS2961729 471 - 0.541401
ppdB b2825 prepilin peptidase dependent protein BRecName: Full=Prepilin peptidase-dependent protein B; Flags: Precursor; chromosome CDS2961175 564 - 0.52305
ppdD b0108 prelipin peptidase dependent proteinRecName: Full=Prepilin peptidase-dependent protein D; Flags: Precursor; chromosome CDS117109 441 - 0.530612
prlA b3300 putative ATPase subunit of translocaseRecName: Full=Protein translocase subunit SecY; chromosome CDS3440788 1332 - 0.496997
secA b0098 preprotein translocase; secretion proteinRecName: Full=Protein translocase subunit SecA; chromosome CDS108279 2706 + 0.524021
secB b3609 protein export; molecular chaperone; may bind to signel sequenceRecName: Full=Protein-export protein SecB; chromosome CDS3781684 468 - 0.508547
secD b0408 protein secretion; membrane protein, part of the channelRecName: Full=Protein translocase subunit SecD; chromosome CDS426871 1848 + 0.531926
secE b3981 preprotein translocaseRecName: Full=Protein translocase subunit SecE; chromosome CDS4175381 384 + 0.549479
secF b0409 protein secretion, membrane proteinRecName: Full=Protein translocase subunit SecF; chromosome CDS428729 972 + 0.516461
secG b3175 protein export-membrane proteinRecName: Full=Protein-export membrane protein SecG; AltName: Full=P12; AltName: Full=Preprotein translocase band 1 subunit; chromosome CDS3320195 333 - 0.495495
sfmA b0530 putative fimbrial-like protein chromosome CDS557402 576 + 0.439236
sfmC b0531 putative chaperoneRecName: Full=Probable fimbrial chaperone SfmC; Flags: Precursor; chromosome CDS558197 693 + 0.425685
sfmD b0532 putative outer membrane protein, export functionRecName: Full=Outer membrane usher protein SfmD; Flags: Precursor; chromosome CDS558920 2604 + 0.478111
sfmF b0534 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein SfmF; Flags: Precursor; chromosome CDS562553 516 + 0.5
smf b4473 orf, hypothetical proteinRecName: Full=Protein smf; chromosome CDS3430458 1125 - 0.509333
sohB b1272 putative proteaseRecName: Full=Probable protease SohB; EC=3.4.21.-; chromosome CDS1327356 1050 + 0.505714
sppA b1766 protease IV, a signal peptide peptidaseRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1846861 1857 + 0.517501
spy b1743 periplasmic protein related to spheroblast formationRecName: Full=Spheroplast protein Y; Flags: Precursor; chromosome CDS1823164 486 - 0.50823
tatA b3836 component of Sec-independent translocase chromosome CDS4019926 312 + 0.448718
tatB b3838 component of Sec-independent translocaseRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS4020241 516 + 0.554264
tatC b3839 component of Sec-independent translocaseRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS4020759 777 + 0.516088
tatE b0627 component of Sec-independent translocaseRecName: Full=Sec-independent protein translocase protein TatE; chromosome CDS658170 204 + 0.5
tolB b0740 periplasmic protein involved in the tonb-independent uptake of group A colicinsRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS776963 1293 + 0.531322
tolC b3035 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes chromosome CDS3176131 1488 + 0.512769
tolQ b0737 inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicinsRecName: Full=Protein TolQ; chromosome CDS774376 693 + 0.50505
tolR b0738 putative inner membrane protein, involved in the tonB-independent uptake of group A colicinsRecName: Full=Protein TolR; chromosome CDS775072 429 + 0.517483
yadK b0136 putative fimbrial proteinRecName: Full=Uncharacterized fimbrial-like protein YadK; Flags: Precursor; chromosome CDS151003 597 - 0.413735
yadN b0141 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YadN; Flags: Precursor; chromosome CDS156299 585 - 0.447863
yagZ b0293 orf, hypothetical proteinRecName: Full=Common pilus major fimbrillin subunit EcpA; AltName: Full=MatB fimbrillin; Flags: Precursor; chromosome CDS309308 588 - 0.528912
yajC b0407 orf, hypothetical proteinRecName: Full=UPF0092 membrane protein YajC; chromosome CDS426511 333 + 0.495495
ybbJ b0488 orf, hypothetical protein chromosome CDS513625 456 - 0.574561
ybgD b0719 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YbgD; Flags: Precursor; chromosome CDS751452 567 - 0.467372
ybgP b0717 putative chaperoneRecName: Full=Uncharacterized fimbrial chaperone YbgP; Flags: Precursor; chromosome CDS748202 729 - 0.477366
ycbR b0939 putative fimbrial chaperoneRecName: Full=Probable fimbrial chaperone protein ElfD; Flags: Precursor; chromosome CDS997713 702 + 0.450142
ycbS b0940 putative outer membrane usher proteinRecName: Full=Probable outer membrane usher protein ElfC; Flags: Precursor; chromosome CDS998439 2601 + 0.478662
ycbU b0942 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YcbU; Flags: Precursor; chromosome CDS1002112 543 + 0.471455
ycgV b1202 putative adhesion and penetration proteinRecName: Full=Uncharacterized protein YcgV; chromosome CDS1252308 2868 - 0.497908
ychE b1242 putative channel proteinRecName: Full=UPF0056 membrane protein YhcE; chromosome CDS1297821 648 + 0.478395
ydeK b1510 orf, hypothetical protein chromosome CDS1592133 3978 - 0.493213
ydeR b1503 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YdeR; Flags: Precursor; chromosome CDS1585817 504 - 0.448413
ydeS b1504 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YdeS; Flags: Precursor; chromosome CDS1586333 531 - 0.448211
ydhQ b1664 possible enzymeRecName: Full=Uncharacterized protein YdhQ; chromosome CDS1742895 1257 - 0.513922
yehB b2109 putative outer membrane proteinRecName: Full=Outer membrane usher protein YehB; Flags: Precursor; chromosome CDS2186452 2481 - 0.455058
yehC b2110 putative chaperoneRecName: Full=Probable fimbrial chaperone YehC; Flags: Precursor; chromosome CDS2188948 720 - 0.393056
yehD b2111 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YehD; Flags: Precursor; chromosome CDS2189702 543 - 0.405157
yejO b2190 putative ATP-binding component of a transport system chromosome CDS2284412 2511 - 0.483473
yfaL b2233 putative ATP-binding component of a transport systemRecName: Full=Uncharacterized protein YfaL; Flags: Precursor; chromosome CDS2338439 3753 - 0.513722
yfcP b2333 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YfcP; Flags: Precursor; chromosome CDS2448073 540 - 0.487037
yfcS b2336 putative chaperoneRecName: Full=Probable fimbrial chaperone YfcS; Flags: Precursor; chromosome CDS2449606 753 - 0.50996
yfcU b2338 putative outer membrane protein chromosome CDS2451287 1737 - 0.510075
yghD b2968 putative secretion pathway proteinRecName: Full=Putative type II secretion system M-type protein YghD; Short=Putative T2SS M-type protein YghD; AltName: Full=Putative extracytoplasmic function protein C; AltName: Full=Putative general secretion pathway M-type protein YghD; chromosome CDS3108612 537 - 0.532588
yghF b2970 putative general secretion pathway for protein export (GSP) chromosome CDS3110076 867 - 0.512111
ygiL b3043 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YgiL; Flags: Precursor; chromosome CDS3183436 552 + 0.436594
yhcA b3215 putative chaperoneRecName: Full=Uncharacterized fimbrial chaperone YhcA; Flags: Precursor; chromosome CDS3360134 675 + 0.416296
yhcD b3216 putative outer membrane proteinRecName: Full=Uncharacterized outer membrane usher protein YhcD; Flags: Precursor; chromosome CDS3360829 2382 + 0.45508
yhgN b3434 orf, hypothetical proteinRecName: Full=UPF0056 inner membrane protein YhgN; chromosome CDS3573094 594 + 0.5
yidC b3705 60 KD inner-membrane proteinRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Inner membrane protein YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Oxa1Ec; chromosome CDS3883099 1647 + 0.536733
yjcP b4080 putative enzymeRecName: Full=Multidrug resistance outer membrane protein MdtP; Flags: Precursor; chromosome CDS4297587 1467 - 0.557601
yqiG b3046 putative membrane protein chromosome CDS3185422 2466 + 0.422141
yraH b3142 putative fimbrial-like proteinRecName: Full=Uncharacterized fimbrial-like protein YraH; Flags: Precursor; chromosome CDS3285448 585 + 0.451282
yraI b3143 putative chaperoneRecName: Full=Probable fimbrial chaperone YraI; Flags: Precursor; chromosome CDS3286112 696 + 0.442529
yraJ b3144 putative outer membrane proteinRecName: Full=Outer membrane usher protein YraJ; Flags: Precursor; chromosome CDS3286836 2517 + 0.475963
yraK b3145 putative fimbrial proteinRecName: Full=Uncharacterized fimbrial-like protein YraK; Flags: Precursor; chromosome CDS3289363 1092 + 0.478938
yrfC b3394 orf, hypothetical proteinRecName: Full=Putative DNA utilization protein HofN; chromosome CDS3519455 540 - 0.553704
zraP b4002 Zn-binding periplasmic protein chromosome CDS4199286 567 - 0.516755