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2024-06-17 13:11:09

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 148

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Pseudomonas fluorescens Pf-5, Pf-5
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PFL_5317 pilin, putative chromosome CDS6083329 525 + 0.649524
NA PFL_1555 filamentous hemagglutinin, intein-containing, putativeSubName: Full=Uncharacterized protein; chromosome CDS1753593 111 + 0.54955
NA PFL_1552 filamentous haemagglutinin family protein, intein-containingSubName: Full=Filamentous hemagglutinin family protein, intein-containing; chromosome CDS1741816 8721 + 0.611398
NA PFL_4682 type IV prepilin PilV, putativeSubName: Full=Type IV pilus biogenesis protein PilV; chromosome CDS5408742 1212 + 0.537954
NA PFL_0227 transport protein ExbD PA0199SubName: Full=TonB system transport protein ExbD2; chromosome CDS264057 402 + 0.621891
NA PFL_0134 agglutination proteinSubName: Full=Type I secretion outer membrane protein, TolC family; chromosome CDS155440 1353 + 0.605322
NA PFL_4739 clp protease, putativeSubName: Full=Endopeptidase Clp; EC=3.4.21.92; chromosome CDS5477036 558 + 0.589606
NA PFL_1642 flagellar protein FliJSubName: Full=Flagellar export protein FliJ; chromosome CDS1845673 450 + 0.648889
NA PFL_3951 type I pilus usher pathway chaperone CsuCSubName: Full=Putative type I pilus usher pathway chaperone CsuC; chromosome CDS4565339 792 - 0.671717
NA PFL_1790 signal peptide peptidase SppA, 36K typeSubName: Full=Signal peptide peptidase SppA, 36K type; EC=3.4.21.-; chromosome CDS1994201 990 + 0.59697
NA PFL_0537 outer membrane efflux proteinSubName: Full=Type I secretion outer membrane protein, TolC family; chromosome CDS626029 1431 - 0.642208
NA PFL_3119 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3589667 579 + 0.62867
NA PFL_3950 type I pili usher protein CsuDSubName: Full=Putative type I pili usher protein CsuD; chromosome CDS4562862 2358 - 0.663274
NA PFL_4973 preprotein translocase, YajC subunit, putativeSubName: Full=Preprotein translocase, YajC subunit; chromosome CDS5725718 339 - 0.575221
NA PFL_6068 TonB system transport protein ExbDSubName: Full=TonB system transport protein ExbD1; chromosome CDS6888808 429 + 0.613054
NA PFL_5316 pilin, putativeSubName: Full=Putative pilin; chromosome CDS6082727 471 - 0.609342
NA PFL_2748 general secretion pathway protein JSubName: Full=Putative general secretion pathway protein J; chromosome CDS3040804 612 - 0.691176
NA PFL_1996 ATP-dependent Clp protease, proteolytic subunit ClpPSubName: Full=ATP-dependent Clp protease family protein; chromosome CDS2223871 1143 + 0.629921
NA PFL_5595 preprotein translocase, SecE subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS6378760 369 - 0.520325
NA PFL_2752 type II secretion pathway protein XcpT chromosome CDS3042869 552 + 0.621377
NA PFL_1369 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1546758 621 - 0.653784
NA PFL_2945 Outer membrane efflux protein familySubName: Full=Outer membrane efflux protein; chromosome CDS3297627 1491 - 0.657277
NA PFL_3634 outer membrane autotransporter, putative chromosome CDS4194234 3132 - 0.670498
NA PFL_4681 type IV pilus biosythesis protein chromosome CDS5407796 957 + 0.568443
NA PFL_1463 pilus assembly chaperoneSubName: Full=Pilus assembly chaperone CupB2; chromosome CDS1641329 744 + 0.52957
NA PFL_1551 hemolysin activator protein, HlyB familySubName: Full=Hemolysin secretion/activation protein, ShlB family; chromosome CDS1739932 1743 + 0.648308
NA PFL_6230 inner membrane protein, 60 kDaRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS7071934 1701 - 0.571429
NA PFL_3688 haemagluttinin repeat protein chromosome CDS4267333 11103 - 0.656759
NA PFL_2821 transport protein ExbB2 PA0693SubName: Full=TonB system transport protein ExbB6; chromosome CDS3145265 1818 + 0.665567
NA PFL_2556 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS2830876 1413 - 0.673036
NA PFL_5562 secretion protein SecY PA4243RecName: Full=Protein translocase subunit SecY; chromosome CDS6352010 1329 - 0.537998
NA PFL_0421 sec-independent protein translocase TatBRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS486744 459 - 0.675381
NA PFL_0158 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS183962 1449 + 0.696342
NA PFL_1592 conserved hypothetical proteinSubName: Full=LTXXQ domain protein; chromosome CDS1790577 438 - 0.611872
NA PFL_1466 hemolysin activator protein, HlyB family, putativeSubName: Full=Outer membrane protein, OMP85 family; chromosome CDS1645563 1752 + 0.653539
NA PFL_3712 tolR proteinSubName: Full=TonB system transport protein ExbD4; chromosome CDS4307502 447 - 0.659955
NA PFL_2862 RND efflux transporter, outer membrane proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS3196299 1494 + 0.677376
NA PFL_0692 TPR domain proteinSubName: Full=Tetratricopeptide repeat domain lipoprotein; chromosome CDS804477 735 - 0.677551
NA PFL_2820 outer membrane protein, OMP85 family chromosome CDS3143567 1677 + 0.65653
NA PFL_0422 sec-independent protein translocase TatARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS487213 282 - 0.599291
NA PFL_0133 calcium-binding outer membrane-like proteinSubName: Full=Large adhesive protein; chromosome CDS140316 14763 - 0.622028
NA PFL_1464 outer membrane usher protein chromosome CDS1642140 2691 + 0.639911
NA PFL_5220 cobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC familySubName: Full=Cobalt/zinc/cadmium resistance protein CzcC; chromosome CDS5979008 1251 - 0.693845
NA PFL_0695 type II/IV secretion system proteinSubName: Full=Type II/IV secretion system protein; chromosome CDS807007 1275 - 0.643922
NA PFL_1462 type I pilus biogensis protein FimASubName: Full=Type I pilus biogensis protein CupB1; chromosome CDS1640735 567 + 0.553792
NA PFL_3713 tolQ proteinSubName: Full=TonB system transport protein ExbB4; chromosome CDS4307965 711 - 0.651196
NA PFL_5311 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; chromosome CDS6077632 402 - 0.597015
NA PFL_5313 conserved hypothetical protein chromosome CDS6081098 474 - 0.622363
NA PFL_0165 hemolysin activator protein, HlyB familySubName: Full=Uncharacterized protein; chromosome CDS195002 318 + 0.613208
NA PFL_4678 type IV pilus biogenesis protein PilQSubName: Full=Pilus assembly protein PilQ; chromosome CDS5404562 1533 + 0.561644
NA PFL_4760 biopolymer transport protein TolRSubName: Full=TolR protein; chromosome CDS5498896 453 - 0.576159
NA PFL_0701 conserved hypothetical proteinSubName: Full=POTRA domain protein, ShlB-type; chromosome CDS812873 1677 - 0.632677
NA PFL_5374 ABC transporter, permease proteinSubName: Full=Type 1 secretion system outer membrane protein HasF; chromosome CDS6142187 1341 - 0.652498
NA PFL_1250 conserved hypothetical proteinSubName: Full=Virulence protein, VirJ family; chromosome CDS1420268 1299 - 0.665127
NA PFL_2757 general secretion pathway protein ESubName: Full=General secretory pathway protein E; chromosome CDS3048781 1422 + 0.694093
NA PFL_3923 pilus assembly chaperoneSubName: Full=Pili assembly chaperone; chromosome CDS4529671 750 + 0.554667
NA PFL_1768 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1970076 408 - 0.620098
NA PFL_4758 tolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS5496537 1302 - 0.584485
NA PFL_1465 pili assembly chaperoneSubName: Full=Pili assembly chaperone CupB4; chromosome CDS1644830 759 + 0.662714
NA PFL_2799 multidrug efflux MFS outer membrane protein, putativeSubName: Full=Putative multidrug efflux MFS outer membrane protein, PltO; chromosome CDS3118032 1497 + 0.654643
NA PFL_0697 bacterial type II/III secretion system proteinSubName: Full=Type II and III secretion system protein; chromosome CDS809462 1254 - 0.655502
NA PFL_0694 conserved hypothetical proteinSubName: Full=Type II secretion system protein F domain protein; chromosome CDS806109 882 - 0.659864
NA PFL_4376 outer membrane autotransporterSubName: Full=Outer membrane autotransporter; chromosome CDS5082536 3192 - 0.624373
NA PFL_1776 MotA/TolQ/ExbB proton channel family protein chromosome CDS1979450 627 + 0.626794
NA PFL_4127 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS4790837 1479 - 0.720081
NA PFL_0693 type II secretion system protein F domainSubName: Full=Type II secretion system protein F domain protein; chromosome CDS805223 885 - 0.645198
NA PFL_3615 ABC-type export system, outer membrane channel proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS4171466 1785 + 0.693557
NA PFL_1469 probable adhesin PA4082SubName: Full=Putative adhesive protein CupB5; chromosome CDS1651932 2889 + 0.625476
NA PFL_0698 conserved hypothetical proteinSubName: Full=Flp pilus assembly protein CpaB; chromosome CDS810735 936 - 0.667735
NA PFL_4706 lipoprotein, putativeSubName: Full=Conjugative transfer ATPase, PFL_4706 family; chromosome CDS5435245 2925 + 0.543248
NA PFL_3242 multidrug efflux RND outer membrane protein OprNSubName: Full=Multidrug efflux RND transporter, outer membrane factor lipoprotein OprN; chromosome CDS3741600 1422 + 0.68706
NA PFL_1556 filamentous haemagglutinin family proteinSubName: Full=Filamentous hemagglutinin family protein; chromosome CDS1753869 3294 + 0.564056
NA PFL_1003 outer membrane efflux proteinSubName: Full=Fusaric acid resistance protein FusA; chromosome CDS1148448 1512 + 0.675926
NA PFL_5287 type IV pilus protein PilASubName: Full=Type IV pilus protein PilA; chromosome CDS6056971 417 - 0.64988
NA PFL_0166 adhesin/haemagglutinin, HecA familySubName: Full=Adhesin/hemagglutinin, HecA family; chromosome CDS195347 9135 + 0.612261
NA PFL_2069 conserved hypothetical protein chromosome CDS2294918 2691 + 0.640282
NA PFL_1467 filamentous haemagglutinin family proteinSubName: Full=Adhesive protein CupB5; chromosome CDS1647390 3036 + 0.63307
NA PFL_4679 integral membrane protein, putativeSubName: Full=Type IV pilus biogenesis protein; chromosome CDS5406087 1167 + 0.55527
NA PFL_0144 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS168288 1482 + 0.679487
NA PFL_0993 MotA/TolQ/ExbB proton channel family proteinSubName: Full=TonB system transport protein ExbB5; chromosome CDS1134673 645 + 0.643411
NA PFL_3922 type I pilus biogenesis proteinSubName: Full=Fimbrial protein; chromosome CDS4529017 582 + 0.57732
NA PFL_4237 haemagglutination repeat protein chromosome CDS4926949 5067 + 0.664693
NA PFL_2756 general secretion pathway protein DSubName: Full=General secretion pathway protein D; chromosome CDS3046176 2385 + 0.671279
NA PFL_2984 outer membrane efflux protein chromosome CDS3359848 1494 + 0.670683
NA PFL_0621 hemolysin activator protein, HlyB familySubName: Full=Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; chromosome CDS719883 1704 + 0.647887
NA PFL_4484 negative regulator of flagellin synthesis FlgM, putativeSubName: Full=Anti-sigma-28 factor, FlgM; chromosome CDS5196351 318 + 0.572327
NA PFL_2822 transport protein ExbD PA0694SubName: Full=TonB system transport protein ExbD6; chromosome CDS3147094 426 + 0.638498
NA PFL_4485 FlgN protein superfamilySubName: Full=FlgN family protein; chromosome CDS5196717 468 + 0.59188
NA PFL_0204 pesticin immunity protein, putativeSubName: Full=Putative pesticin immunity protein; chromosome CDS239869 447 + 0.626398
NA PFL_0696 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS808278 1188 - 0.675084
NA PFL_3924 fimbrial biogenesis usher protein, interruption-CSubName: Full=Fimbrial usher protein; chromosome CDS4530506 2481 + 0.620314
NA PFL_6067 TonB system transport protein ExbBSubName: Full=TonB system transport protein ExbB1; chromosome CDS6887797 1005 + 0.661692
NA PFL_4956 type IV pilus biogenesis protein PilFSubName: Full=Type IV pilus biogenesis/stability protein PilF; chromosome CDS5711131 759 - 0.587615
NA PFL_5312 type IV pilus-associated protein, putativeSubName: Full=Putative type IV pilus-associated protein; chromosome CDS6078049 3063 - 0.653934
NA PFL_3918 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS4522823 1470 - 0.630612
NA PFL_0990 TonB system transport proteinSubName: Full=TonB system transport protein ExbD5; chromosome CDS1131181 408 + 0.514706
NA PFL_5949 conserved hypothetical proteinSubName: Full=Nodulation efficiency protein D (NfeD) family protein; chromosome CDS6762712 450 + 0.646667
NA PFL_0622 adhesin/haemagglutinin, HecA familySubName: Full=Adhesin/hemagglutinin, HecA family; chromosome CDS721622 9636 + 0.653798
NA PFL_2761 haemagluttinin repeat proteinSubName: Full=Hemagglutinin family protein; chromosome CDS3054644 12564 + 0.686644
NA PFL_0452 conserved hypothetical proteinSubName: Full=Sporulation and cell division repeat protein; chromosome CDS518011 1581 + 0.645161
NA PFL_1777 biopolymer transport protein ExbD/TolR familySubName: Full=Transport energizing protein, ExbD/TolR family; chromosome CDS1980073 429 + 0.624709
NA PFL_5946 type II secretion system protein, putativeSubName: Full=Type II/IV secretion system protein; chromosome CDS6758199 1779 + 0.652614
NA PFL_4236 activation/secretion protein, TPS family, putativeSubName: Full=Hemolysin secretion/activation protein, ShlB family; chromosome CDS4925228 1725 + 0.669565
NA PFL_0663 membrane protein, MarC familySubName: Full=Membrane protein, MarC family; chromosome CDS771589 597 - 0.648241
NA PFL_0226 TonB system transport protein ExbBSubName: Full=TonB system transport protein ExbB2; chromosome CDS263330 726 + 0.658402
NA PFL_3206 ABC transporter, permease protein chromosome CDS3696341 1350 - 0.642222
ccmD PFL_1683 cytochrome c-type biogenesis protein CcmDSubName: Full=Heme exporter protein CcmD; chromosome CDS1885316 177 + 0.610169
clpP PFL_3987 ATP-dependent Clp protease, proteolytic subunit ClpPRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS4605758 636 - 0.564465
dprA PFL_0024 smf protein chromosome CDS25762 1095 + 0.689498
ffh PFL_1093 signal recognition particle proteinRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS1248189 1377 + 0.61801
flhA PFL_1664 flagellar biosynthesis protein FlhASubName: Full=Flagellar biosynthesis protein FlhA; chromosome CDS1866657 2130 + 0.619718
flhB PFL_1654 flagellar biosynthetic protein FlhBSubName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS1854568 1137 + 0.639402
fliE PFL_1637 flagellar hook-basal body complex protein (FliE)RecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS1840325 327 + 0.529052
fliF PFL_1638 flagellar M-ring protein FliFRecName: Full=Flagellar M-ring protein; chromosome CDS1840667 1788 + 0.637584
fliH PFL_1640 Flagellar assembly protein FliHSubName: Full=Flagellar assembly protein FliH; chromosome CDS1843476 843 + 0.637011
fliI PFL_1641 flagellum-specific ATP synthase FliISubName: Full=Flagellum-specific ATP synthase FliI; EC=3.6.3.14; chromosome CDS1844308 1359 + 0.655629
fliN PFL_1649 flagellar motor switch protein FliNSubName: Full=Flagellar motor switch protein FliN; chromosome CDS1851829 462 + 0.614719
fliP PFL_1651 flagellar biosynthetic protein FliP chromosome CDS1852758 726 + 0.612948
fliQ PFL_1652 flagellar biosynthetic protein FliQSubName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS1853508 270 + 0.6
fliR PFL_1653 flagellar biosynthetic protein FliR chromosome CDS1853797 768 + 0.625
fliS PFL_1632 flagellar protein FliSSubName: Full=Flagellar protein FliS; chromosome CDS1835112 396 + 0.568182
ftsY PFL_5857 signal recognition particle-docking protein FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS6660701 1494 - 0.65261
gspH PFL_2749 general secretion pathway protein HSubName: Full=General secretion pathway protein H; chromosome CDS3041412 462 - 0.67316
gspI PFL_2751 general secretion pathway protein ISubName: Full=General secretion pathway protein I; chromosome CDS3042436 387 - 0.689922
gspK PFL_2753 General secretion pathway protein KRecName: Full=Type II secretion system protein K; chromosome CDS3043429 981 + 0.681957
lepB PFL_1070 signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS1221895 855 + 0.597661
lspA PFL_5320 signal peptidase IIRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS6085349 513 - 0.617934
mtrE PFL_4083 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS4711831 1392 + 0.672414
mtrE PFL_2142 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein, NodT family; chromosome CDS2364934 1431 - 0.694619
mtrE PFL_1330 outer membrane efflux proteinSubName: Full=Efflux transporter, outer membrane factor lipoprotein EmhC; chromosome CDS1504150 1461 - 0.651608
pilC PFL_2758 general secretion pathway protein FSubName: Full=General secretion pathway protein F; chromosome CDS3050202 1212 + 0.691419
pilC PFL_5288 type IV pilus biogenesis protein PilCSubName: Full=Type IV pilus biogenesis protein PilC; chromosome CDS6057717 1218 + 0.646141
pilD PFL_5289 type IV pilus prepilin peptidase PilDRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome CDS6058937 873 + 0.634593
pilM PFL_0445 type IV pilus biogenesis protein PilMSubName: Full=Type IV pilus biogenesis protein PilM; chromosome CDS511691 1062 + 0.661959
pilN PFL_4676 type IV pilus protein, PilNSubName: Full=Type IV pilus protein, PilN; chromosome CDS5400859 1842 + 0.579262
pilN PFL_0446 type IV pilus biogenesis protein PilNSubName: Full=Type IV pilus biogenesis protein PilN; chromosome CDS512752 567 + 0.631393
pilO PFL_0447 type IV pilus biogenesis protein PilOSubName: Full=Type IV pilus biogenesis protein PilO; chromosome CDS513315 624 + 0.649038
pilP PFL_0448 type IV pilus biogenesis protein PilPSubName: Full=Type IV pilus biogenesis protein PilP; chromosome CDS513935 531 + 0.647834
pilQ PFL_0449 type IV pilus biogenesis protein PilQSubName: Full=Type IV pilus biogenesis protein PilQ; chromosome CDS514480 1752 + 0.628995
pilT-1 PFL_5837 twitching motility protein chromosome CDS6645826 1248 - 0.66266
secA PFL_1271 preprotein translocase, SecA subunitSubName: Full=SEC-C domain protein; chromosome CDS1442402 201 - 0.59204
secA PFL_4781 preprotein translocase, SecA subunitRecName: Full=Protein translocase subunit SecA; chromosome CDS5518760 2742 - 0.602845
secB PFL_0374 protein-export protein SecBRecName: Full=Protein-export protein SecB; chromosome CDS426107 480 + 0.6
secD PFL_4972 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS5723787 1869 - 0.605136
secF PFL_4971 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS5722863 915 - 0.60765
sppA PFL_3667 peptidase, U7 familySubName: Full=Peptidase, S49 family; EC=3.4.21.-; chromosome CDS4241924 1035 - 0.610628
tatC PFL_0420 Sec-independent protein translocase TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS485953 795 - 0.623899
tolQ PFL_4761 tolQ proteinSubName: Full=TolQ protein; chromosome CDS5499362 696 - 0.622126