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2024-06-10 10:25:34

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome I

Number of genes found: 91

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Vibrio fischeri ES114, ES114
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA VF2465 general secretion pathway protein MRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; chromosome I CDS2770130 492 - 0.398374
NA VF1840 flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome I CDS2078184 783 - 0.409962
NA VF1837 flagellar biosynthesis protein FlhASubName: Full=Flagellar export pore protein FlhA; chromosome I CDS2073939 2094 - 0.417861
NA VF0513 general secretion pathway protein DSubName: Full=General secretion pathway protein D; chromosome I CDS549477 1311 + 0.394355
NA VF0018 NADH dehydrogenase subunit II-related proteinSubName: Full=NADH dehydrogenase subunit II-related protein; chromosome I CDS20925 252 + 0.388889
NA VF0510 fimbrial protein precursorSubName: Full=Fimbrial protein; chromosome I CDS547989 216 + 0.375
NA VF0431 pili retraction protein PilTSubName: Full=Predicted transporter; chromosome I CDS459371 1038 + 0.399807
NA VF2349 protein translocase subunit SecBRecName: Full=Protein-export protein SecB; chromosome I CDS2643743 471 - 0.430998
NA VF1852 flagellar M-ring protein FliFRecName: Full=Flagellar M-ring protein; chromosome I CDS2087694 1734 - 0.412918
NA VF0517 TadB-like protein involved in pilus formation and/or protein secretionSubName: Full=TadB-like protein involved in pilus formation and/or protein secretion; chromosome I CDS553838 918 + 0.376906
NA VF2470 general secretion pathway protein HSubName: Full=General secretion pathway protein H; chromosome I CDS2773911 597 - 0.430486
NA VF2186 pilus assembly protein PilBSubName: Full=Pilus assembly protein PilB; chromosome I CDS2463866 1689 + 0.419775
NA VF1853 flagellar hook-basal body complex protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome I CDS2089445 312 - 0.413462
NA VF2193 protein translocase subunit SecARecName: Full=Protein translocase subunit SecA; chromosome I CDS2469955 2724 - 0.401248
NA VF0519 secretory protein containing TPR-repeats, similar to TadDSubName: Full=Secretory protein containing TPR-repeats; chromosome I CDS555620 741 + 0.34143
NA VF0962 TolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome I CDS1056432 1353 + 0.385809
NA VF1821 heme exporter protein DSubName: Full=Heme exporter protein D; chromosome I CDS2060880 207 - 0.36715
NA VF2467 general secretion pathway protein KRecName: Full=Type II secretion system protein K; chromosome I CDS2771843 1035 - 0.395169
NA VF0049 Sec-independent protein translocase protein TatARecName: Full=Sec-independent protein translocase protein TatA; chromosome I CDS56447 249 + 0.353414
NA VF2471 general secretion pathway protein GSubName: Full=General secretion pathway protein G; chromosome I CDS2774530 453 - 0.426049
NA VF0571 pili retraction protein PilTSubName: Full=Type IV pilin, putative; chromosome I CDS625442 516 - 0.344961
NA VF2297 pili assembly protein PilMSubName: Full=Pili assembly protein PilM; chromosome I CDS2586006 1002 - 0.370259
NA VF0958 TolQ proteinSubName: Full=Membrane spanning protein in TolA-TolQ-TolR complex; chromosome I CDS1053141 687 + 0.403202
NA VF0548 signal recognition particle, subunit FFH/SRP54RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome I CDS597322 1374 + 0.401747
NA VF0051 Sec-independent protein translocase protein TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome I CDS57082 756 + 0.398148
NA VF1967 protein translocase subunit SecDRecName: Full=Protein translocase subunit SecD; chromosome I CDS2203820 1857 - 0.417878
NA VF2453 cell division protein FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome I CDS2760056 1239 - 0.403551
NA VF1968 protein translocase subunit YajCSubName: Full=SecYEG protein translocase auxillary subunit; chromosome I CDS2205730 336 - 0.395833
NA VF2243 general secretion pathway protein ASubName: Full=General secretion pathway protein A; chromosome I CDS2525780 1557 - 0.391137
NA VF1881 negative regulator of flagellin synthesis FlgMSubName: Full=Flagellar anti-sigma-28 factor FlgM; chromosome I CDS2120388 312 + 0.400641
NA VF0362 type 4 fimbrial assembly protein PilBSubName: Full=MSHA biogenesis protein MshE; chromosome I CDS394611 1725 + 0.4
NA VF0522 TadG-like proteinSubName: Full=TadG-like protein; chromosome I CDS557374 1398 + 0.388412
NA VF0050 Sec-independent protein translocase protein TatBRecName: Full=Sec-independent protein translocase protein TatB; chromosome I CDS56699 381 + 0.419948
NA VF1162 outer membrane protein TolCSubName: Full=Outer membrane protein TolC; chromosome I CDS1291644 1281 + 0.373927
NA VF1848 flagellar FliJ proteinSubName: Full=Flagellar export protein FliJ; chromosome I CDS2083975 444 - 0.385135
NA VF0360 general secretion pathway protein ASubName: Full=MSHA biogenesis protein MshM; chromosome I CDS392633 849 + 0.38987
NA VF2422 protein translocase subunit SecERecName: Full=Protein translocase subunit SecE; chromosome I CDS2714813 378 - 0.388889
NA VF0875 protein translocase subunit SecDRecName: Full=Protein translocase subunit SecD; chromosome I CDS959801 1824 - 0.439145
NA VF0432 pili retraction protein PilUSubName: Full=Pili retraction protein PilU; chromosome I CDS460411 1101 + 0.420527
NA VF1850 flagellar assembly protein FliHSubName: Full=Flagellar assembly protein FliH, negative regulator of FliI; chromosome I CDS2085748 798 - 0.39599
NA VF0257 Protein translocase subunit SecYRecName: Full=Protein translocase subunit SecY; chromosome I CDS262831 1332 + 0.436937
NA VF0516 putative type IV secretion NTPase similar to TadASubName: Full=Putative type IV secretion NTPase; chromosome I CDS552549 1290 + 0.390698
NA VF2473 general secretion pathway protein ESubName: Full=General secretion pathway protein E; chromosome I CDS2776259 1500 - 0.408
NA VF1617 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS1815586 396 + 0.348485
NA VF2294 pilus expression proteinSubName: Full=Pili assembly protein PilP; chromosome I CDS2584366 519 - 0.421965
NA VF0511 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS548216 438 + 0.287671
NA VF2466 general secretion pathway protein LRecName: Full=Type II secretion system protein L; Short=T2SS protein L; chromosome I CDS2770621 1254 - 0.407496
NA VF2472 general secretion pathway protein FSubName: Full=General secretion pathway protein F; chromosome I CDS2775044 1215 - 0.405761
NA VF0627 PilF proteinSubName: Full=Type IV pilus biogenesis/stability protein; chromosome I CDS683798 633 + 0.406003
NA VF2342 periplasmic protein CpxPSubName: Full=Periplasmic protein CpxP, modulator of CpxAR signaling; chromosome I CDS2638247 285 - 0.396491
NA VF0368 MshDSubName: Full=MshD protein; chromosome I CDS400029 582 + 0.395189
NA VF2541 DNA processing proteinSubName: Full=DNA processing protein DprA (Smf), possibly competence-related; chromosome I CDS2869577 1110 - 0.431532
NA VF2468 general secretion pathway protein JSubName: Full=General secretion pathway protein J; chromosome I CDS2772877 681 - 0.378855
NA VF2469 general secretion pathway protein ISubName: Full=General secretion pathway protein I; chromosome I CDS2773544 378 - 0.396825
NA VF1844 flagellar motor switch protein FliNSubName: Full=Flagellar motor switch component FliN; chromosome I CDS2080549 390 - 0.410256
NA VF0796 ATP-dependent Clp protease proteolytic subunitRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome I CDS871676 624 + 0.407051
NA VF2293 pili secretion protein PilQSubName: Full=Pili ecretion protein PilQ; chromosome I CDS2582591 1749 - 0.392224
NA VF1842 flagellar biosynthetic protein FliPSubName: Full=Flagellar biosynthesis protein FliP; chromosome I CDS2079283 870 - 0.406897
NA VF0468 lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome I CDS501698 516 + 0.389535
NA VF1643 signal peptide peptidase SppARecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome I CDS1851358 1857 + 0.391492
NA VF2375 multiple antibiotic resistance protein MarCSubName: Full=Predicted inner membrane protein; chromosome I CDS2668998 624 + 0.402244
NA VF1849 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase FliI; EC=3.6.3.14; chromosome I CDS2084429 1320 - 0.431061
NA VF0483 protein translocase subunit SecGSubName: Full=Preprotein translocase membrane subunit; chromosome I CDS518936 333 + 0.426426
NA VF1040 possible protease SohBSubName: Full=Predicted inner membrane peptidase; EC=3.4.21.-; chromosome I CDS1149236 1062 + 0.382298
NA VF0359 general secretion pathway protein DSubName: Full=MSHA biogenesis protein MshL; chromosome I CDS390980 1641 + 0.398537
NA VF2088 signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome I CDS2330734 903 - 0.41639
NA VF1966 protein translocase subunit SecFRecName: Full=Protein-export membrane protein SecF; chromosome I CDS2202857 951 - 0.401682
NA VF0874 protein translocase subunit SecFRecName: Full=Protein-export membrane protein SecF; chromosome I CDS958898 900 - 0.435556
NA VF0570 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS624844 645 - 0.344186
NA VF0003 60 kDa inner membrane protein YidCRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome I CDS2281 1626 - 0.407749
NA VF1697 latent nuclear antigenSubName: Full=Latent nuclear antigen; chromosome I CDS1912411 4122 - 0.387676
NA VF1223 TolR proteinSubName: Full=TonB system transport protein ExbD1; chromosome I CDS1360035 420 - 0.354762
NA VF2295 pili assembly protein PilOSubName: Full=Pili assembly protein PilO; chromosome I CDS2584877 579 - 0.381693
NA VF0959 TolR proteinSubName: Full=Membrane spanning protein in TolA-TolQ-TolR complex; chromosome I CDS1053827 447 + 0.380313
NA VF2187 pilus assembly protein PilCSubName: Full=PilC; SubName: Full=Pilus assembly protein PilC; chromosome I CDS2465574 1239 + 0.37611
NA VF0572 pili subunit PilA1SubName: Full=Pili subunit PilA1; chromosome I CDS626055 438 + 0.328767
NA VF2474 general secretion pathway protein DSubName: Full=General secretion pathway protein D; chromosome I CDS2777758 2022 - 0.417903
NA VF2185 pilin subunit PilASubName: Full=Pilin subunit PilA; chromosome I CDS2463455 405 + 0.390123
NA VF1858 flagellar protein FliSSubName: Full=Flagellin chaperone FliS; chromosome I CDS2095181 411 - 0.399027
NA VF0518 bipartite nuclear localization signal containing protein, similar to TadCSubName: Full=Bipartite nuclear localization signal containing protein; chromosome I CDS554755 873 + 0.355097
NA VF2296 pili assembly protein PilNSubName: Full=Pili assembly protein PilN; chromosome I CDS2585455 567 - 0.37037
NA VF0369 hypothetical proteinSubName: Full=MSHA pilus assembly protein MshO; chromosome I CDS400610 726 + 0.349862
NA VF2188 type 4 prepilin peptidaseRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome I CDS2466917 888 + 0.396396
NA VF0512 conserved hypothetical proteinSubName: Full=Flp pilus assembly protein CpaB family; chromosome I CDS548661 813 + 0.372694
NA VF0363 general secretion pathway protein FSubName: Full=MSHA biogenesis protein MshG; chromosome I CDS396345 1227 + 0.398533
NA VF2456 multiple antibiotic resistance protein MarCSubName: Full=Multiple antibiotic resistance protein MarC; chromosome I CDS2762379 594 + 0.39899
NA VF1841 flagellar biosynthetic protein FliQSubName: Full=Flagellar biosynthesis protein FliQ; chromosome I CDS2079004 270 - 0.414815
NA VF1839 flagellar biosynthetic protein FlhBSubName: Full=Flagellar export pore protein FlhB; chromosome I CDS2077008 1131 - 0.40672
NA VF0515 ATPases involved in chromosome partitioningSubName: Full=ATPase involved in chromosome partitioning; chromosome I CDS551304 1239 + 0.36481
NA VF2475 general secretion pathway protein CSubName: Full=General secretion pathway protein C; chromosome I CDS2779824 909 - 0.386139
NA VF2233 type I secretion outer membrane proteinSubName: Full=Transport channel; chromosome I CDS2511967 1326 + 0.404977