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2024-06-10 00:35:42

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome

Number of genes found: 133

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Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA S1528 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1487193 1599 - 0.500938
NA S1509 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1470319 498 + 0.497992
NA S1698 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1642592 948 + 0.504219
NA S2585 putative 2-component transcriptional regulatorRecName: Full=Transcriptional regulatory protein YpdB; chromosome CDS2481362 735 + 0.47483
NA S4836 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4171175 762 - 0.372703
NA S3755 hypothetical proteinRecName: Full=Periplasmic protein CpxP; Flags: Precursor; chromosome CDS3651915 369 - 0.479675
NA S1241 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1201348 1524 + 0.450787
NA S1641 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1593363 714 + 0.42577
NA S2710 hypothetical arsenate reductaseSubName: Full=Hypothetical arsenate reductase; chromosome CDS2604133 507 + 0.605523
NA S0827 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS815650 1329 + 0.433409
NA S2553 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2444747 486 - 0.528807
apaH S0048 diadenosine tetraphosphataseRecName: Full=Bis(5-nucleosyl)-tetraphosphatase, symmetrical; EC=3.6.1.41; AltName: Full=Ap4A hydrolase; AltName: Full=Diadenosine 5,5-P1,P4-tetraphosphate pyrophosphohydrolase; AltName: Full=Diadenosine tetraphosphatase; chromosome CDS49184 843 - 0.559905
arcA S4704 negative response regulator of genes in aerobic pathways (sensors, ArcB and CpxA)RecName: Full=Aerobic respiration control protein ArcA; chromosome CDS4597292 717 - 0.51046
arcB S3468 histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcARecName: Full=Aerobic respiration control sensor protein ArcB; EC=2.7.13.3; chromosome CDS3333973 2337 - 0.506205
argT S2521 lysine-, arginine-, ornithine-binding periplasmic proteinSubName: Full=Lysine-, arginine-, ornithine-binding periplasmic protein; chromosome CDS2414578 783 - 0.498084
artI S0859 arginine 3rd transport system periplasmic binding proteinSubName: Full=Arginine 3rd transport system periplasmic binding protein; chromosome CDS843808 732 - 0.489071
artJ S0856 arginine 3rd transport system periplasmic binding proteinSubName: Full=Arginine 3rd transport system periplasmic binding protein; chromosome CDS841394 732 - 0.456284
baeR S2269 transcriptional response regulatory protein (sensor BaeS)SubName: Full=Transcriptional response regulatory protein (Sensor BaeS); chromosome CDS2153920 723 + 0.538036
baeS S2268 sensor protein for BaeRSubName: Full=Sensor protein for BaeR; chromosome CDS2152520 1404 + 0.547721
barA S2993 sensor-regulatorRecName: Full=Signal transduction histidine-protein kinase BarA; EC=2.7.13.3; chromosome CDS2868747 2757 + 0.498731
basR S3620 transcriptional regulatory protein,SubName: Full=Transcriptional regulatory protein; chromosome CDS3496896 669 - 0.532138
basS S3619 sensor protein for BasRSubName: Full=Sensor protein for BasR; chromosome CDS3495795 1101 - 0.543143
bglJ S4669 2-component transcriptional regulatorSubName: Full=2-component transcriptional regulator; chromosome CDS4563323 528 + 0.464015
bolA S0386 possible regulator of murein genesRecName: Full=Protein BolA; chromosome CDS389339 351 + 0.481481
cheA S2028 chemotaxis protein CheASubName: Full=Chemotaxis protein CheA; chromosome CDS1948644 1965 - 0.531807
cheB S2023 response regulator for chemotaxis (cheA sensor); protein methylesteraseRecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; chromosome CDS1942736 1050 - 0.537143
cheR S2024 response regulator for chemotaxis; protein glutamate methyltransferaseRecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; chromosome CDS1943788 861 - 0.538908
cheW S2027 positive regulator of CheA protein activityRecName: Full=Chemotaxis protein CheW; chromosome CDS1948120 504 - 0.515873
cheY S2022 chemotaxis protein CheYRecName: Full=Chemotaxis protein CheY; chromosome CDS1942332 390 - 0.489744
cheZ S2021 chemotaxis protein CheZRecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; chromosome CDS1941677 645 - 0.533333
cpxA S3758 probable sensor protein (histidine protein kinase)SubName: Full=Probable sensor protein (Histidine protein kinase); chromosome CDS3653260 1374 + 0.545124
cpxR S3757 transcriptional regulator in 2-component systemRecName: Full=Transcriptional regulatory protein CpxR; chromosome CDS3652565 699 + 0.51216
creB S4701 catabolic regulation response regulatorSubName: Full=Catabolic regulation response regulator; chromosome CDS4593710 690 + 0.549275
creC S4702 catabolite repression sensor kinase for PhoB, alternative sensor for pho regulonSubName: Full=Catabolite repression sensor kinase for PhoB, alternative sensor for pho regulon; chromosome CDS4594399 1425 + 0.538947
crp S4387 cyclic AMP receptor proteinRecName: Full=cAMP-activated global transcriptional regulator CRP; AltName: Full=Catabolite activator protein; Short=CAP; AltName: Full=Catabolite gene activator; AltName: Full=cAMP receptor protein; Short=CRP; AltName: Full=cAMP regulatory protein; chromosome CDS4316742 633 - 0.49763
csrA S2910 carbon storage regulatorRecName: Full=Carbon storage regulator; chromosome CDS2787095 186 - 0.494624
cstA S0518 carbon starvation proteinSubName: Full=Carbon starvation protein; chromosome CDS529149 2106 + 0.57075
dksA S0140 dnaK suppressor proteinRecName: Full=RNA polymerase-binding transcription factor DksA; chromosome CDS151418 456 - 0.526316
envZ S4340 protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompCRecName: Full=Osmolarity sensor protein EnvZ; EC=2.7.13.3; chromosome CDS4267522 1353 + 0.569845
evgA S2573 putative positive transcription regulator (sensor EvgS)RecName: Full=Positive transcription regulator EvgA; chromosome CDS2464957 615 + 0.406504
evgS S2574 putative sensor for regulator EvgASubName: Full=Putative sensor for regulator EvgA; chromosome CDS2465576 3594 + 0.407346
fhlA S2940 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonsSubName: Full=Formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons; chromosome CDS2817298 2079 + 0.525253
fnr S1434 global transcription regulator FnrRecName: Full=Fumarate and nitrate reduction regulatory protein; chromosome CDS1399664 753 - 0.508632
frvA S3771 PTS system, fructose-specific IIA componentSubName: Full=PTS system, fructose-specific IIA component; chromosome CDS3666539 447 + 0.503356
gatA S2282 galactitol-specific enzyme IIA of phosphotransferase systemSubName: Full=Galactitol-specific enzyme IIA of phosphotransferase system; chromosome CDS2163137 453 - 0.421634
glnE S3299 adenylylating enzyme for glutamine synthetaseRecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthetase adenylyltransferase; Short=ATase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; chromosome CDS3174589 2841 - 0.552974
glnG S3808 sensor glnL response regulator (nitrogen regulator I, NRI)SubName: Full=Sensor glnL response regulator (Nitrogen regulator I, NRI); chromosome CDS3705253 1410 + 0.564539
glnH S0804 periplasmic glutamine-binding protein; permeaseSubName: Full=Periplasmic glutamine-binding protein permease; chromosome CDS787477 747 - 0.485944
glnL S3807 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII)RecName: Full=Nitrogen regulation protein NR(II); EC=2.7.13.3; chromosome CDS3704192 1050 + 0.544762
hisJ S2520 histidine-binding periplasmic protein of high-affinity histidine transport systemSubName: Full=Histidine-binding periplasmic protein of high-affinity histidine transport system; chromosome CDS2413575 783 - 0.49553
hnr S1321 Hnr proteinRecName: Full=Regulator of RpoS; chromosome CDS1285174 1014 + 0.487179
hydG S3659 response regulator of hydrogenase 3 activity (sensor HydH)SubName: Full=Response regulator of hydrogenase 3 activity (Sensor HydH); chromosome CDS3549614 1326 - 0.567873
hydH S3660 sensor kinase for HydG, hydrogenase 3 activitySubName: Full=Sensor kinase for HydG, hydrogenase 3 activity; chromosome CDS3550936 1377 - 0.542484
lexA S3569 regulator for SOS(lexA) regulonRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS3438963 609 + 0.52381
narL S1308 nitrate/nitrite response regulator protein NarLRecName: Full=Nitrate/nitrite response regulator protein NarL; chromosome CDS1270706 651 - 0.516129
narP S2407 nitrate/nitrite response regulator (sensor NarQ)SubName: Full=Nitrate/nitrite response regulator (Sensor NarQ); chromosome CDS2291958 648 + 0.523148
narX S1309 nitrate/nitrite sensor protein NarXRecName: Full=Nitrate/nitrite sensor protein NarX; EC=2.7.13.3; chromosome CDS1271349 1797 - 0.534224
nrfB S3598 formate-dependent nitrite reductaseSubName: Full=Formate-dependent nitrite reductase; chromosome CDS3472020 567 + 0.536155
ompR S4339 response regulator (sensor, EnvZ)RecName: Full=Transcriptional regulatory protein OmpR; chromosome CDS4266806 720 + 0.547222
phoB S0344 positive response regulator for pho regulonRecName: Full=Phosphate regulon transcriptional regulatory protein PhoB; chromosome CDS345784 690 + 0.53913
phoP S1232 transcriptional regulatory proteinRecName: Full=Virulence transcriptional regulatory protein PhoP; chromosome CDS1193853 672 - 0.480655
phoQ S1231 sensor protein PhoQRecName: Full=Virulence sensor protein PhoQ; EC=2.7.13.3; EC=3.1.3.-; AltName: Full=Sensor histidine protein kinase/phosphatase PhoQ; chromosome CDS1192393 1461 - 0.514031
phoR S0345 positive and negative sensor protein for pho regulonSubName: Full=Positive and negative sensor protein for pho regulon; chromosome CDS346531 1296 + 0.532407
pspA S1391 phage shock protein, inner membrane proteinRecName: Full=Phage shock protein A; chromosome CDS1362091 669 + 0.491779
pspC S1393 putative regulator of phage shock responseRecName: Full=Phage shock protein C; chromosome CDS1363037 360 + 0.502778
pspF S1390 psp operon transcriptional activatorSubName: Full=Psp operon transcriptional activator; chromosome CDS1360947 993 - 0.521652
ptsN S3462 phosphotransferase system enzyme IIARecName: Full=Nitrogen regulatory protein; AltName: Full=Enzyme IIA-NTR; Includes: RecName: Full=Phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=PTS system EIIA component; chromosome CDS3329864 492 + 0.518293
ptsP S3037 PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)SubName: Full=PTS system, enzyme I, transcriptional regulator (With NPR and NTR proteins); chromosome CDS2921231 2247 - 0.538051
ptxA S4620 putative PTS system enzyme II A componentRecName: Full=Ascorbate-specific phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=PTS system ascorbate-specific EIIA component; chromosome CDS4518146 465 + 0.552688
rcsA S2090 positive regulator for ctr capsule biosynthesis, positive transcription factorSubName: Full=Positive regulator for ctr capsule biosynthesis, positive transcription factor; chromosome CDS2000515 624 + 0.383013
rcsB S2432 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)RecName: Full=Transcriptional regulatory protein RcsB; chromosome CDS2317037 651 + 0.477727
rcsC S2433 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsBSubName: Full=Sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB; chromosome CDS2317887 2850 - 0.509123
relA S2991 (p)ppGpp synthetase I (GTP pyrophosphokinase)RecName: Full=GTP pyrophosphokinase; EC=2.7.6.5; AltName: Full=(p)ppGpp synthase; AltName: Full=ATP:GTP 3-pyrophosphotransferase; AltName: Full=ppGpp synthase I; chromosome CDS2865107 2235 - 0.53736
rseA S2807 sigma-E factor regulatory protein RseARecName: Full=Anti-sigma-E factor RseA; AltName: Full=Regulator of SigE; AltName: Full=Sigma-E anti-sigma factor RseA; AltName: Full=Sigma-E factor negative regulatory protein; chromosome CDS2699413 651 - 0.519201
rseB S2806 sigma-E factor regulatory protein RseBRecName: Full=Sigma-E factor regulatory protein RseB; Flags: Precursor; chromosome CDS2698457 957 - 0.507837
rseC S2805 sigma-E factorSubName: Full=Sigma-E factor; chromosome CDS2697981 480 - 0.558333
rstA S1761 response transcriptional regulatory protein (RstB sensor)SubName: Full=Response transcriptional regulatory protein (RstB sensor); chromosome CDS1696434 744 + 0.485215
rstB S1763 sensor histidine protein kinase, RstA regulatorSubName: Full=Sensor histidine protein kinase, RstA regulator; chromosome CDS1698900 1302 + 0.503072
rtcR S4320 putative 2-component regulatorSubName: Full=Putative 2-component regulator; chromosome CDS4241588 1599 - 0.553471
rtn S2392 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2273382 1557 + 0.500963
spoT S4079 (p)ppGpp synthetase II and guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolaseRecName: Full=Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; EC=3.1.7.2; AltName: Full=Penta-phosphate guanosine-3-pyrophosphohydrolase; Short=(ppGpp)ase; chromosome CDS3980433 2109 - 0.537696
spy S1600 periplasmic proteinSubName: Full=Periplasmic protein; chromosome CDS1558202 486 + 0.50823
tap S2025 methyl-accepting chemotaxis protein IV, peptide sensor receptorSubName: Full=Methyl-accepting chemotaxis protein IV, peptide sensor receptor; chromosome CDS1944667 1602 - 0.538702
tar S2026 methyl-accepting chemotaxis protein II, aspartate sensor receptorSubName: Full=Methyl-accepting chemotaxis protein II, aspartate sensor receptor; chromosome CDS1946314 1662 - 0.527076
torR S1065 TorCAD response regulatorSubName: Full=DNA-binding transcriptional regulator TorR; SubName: Full=TorCAD response regulator; chromosome CDS1049126 693 - 0.526696
trg S1485 methyl-accepting chemotaxis protein III, ribose sensor receptorSubName: Full=Methyl-accepting chemotaxis protein III, ribose sensor receptor; chromosome CDS1446880 1641 + 0.508836
tsr S4656 methyl-accepting chemotaxis protein I, serine sensor receptorSubName: Full=Methyl-accepting chemotaxis protein I, serine sensor receptor; chromosome CDS4550098 1665 + 0.53994
uhpA S3976 response regulatorRecName: Full=Transcriptional regulatory protein UhpA; chromosome CDS3872000 591 - 0.590525
uhpB S3975 sensor histidine protein kinase, phosphorylates UhpASubName: Full=Sensor histidine protein kinase, phosphorylates UhpA; chromosome CDS3870498 1503 - 0.569528
umuD S1260 mutagenesis and repair proteinRecName: Full=Protein UmuD; EC=3.4.21.-; Contains: RecName: Full=Protein UmuD; chromosome CDS1217359 420 + 0.478571
uspA S4242 universal stress proteinRecName: Full=Universal stress protein A; chromosome CDS4157618 435 - 0.485057
uvrY S2053 putative 2-component transcriptional regulatorRecName: Full=Response regulator UvrY; chromosome CDS1967641 657 - 0.490107
waaP S4101 lipopolysaccharide core biosynthesis proteinSubName: Full=Lipopolysaccharide core biosynthesis protein; chromosome CDS3999755 807 + 0.478315
waaY S4103 putative LPS biosynthesis proteinSubName: Full=Putative LPS biosynthesis protein; chromosome CDS4001637 708 + 0.305085
wzb S2249 probable protein-tyrosine-phosphataseSubName: Full=Probable protein-tyrosine-phosphatase; chromosome CDS2123880 444 - 0.538288
yaiC S0329 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS332080 1116 + 0.536738
ybcZ S0479 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS487035 1443 - 0.519058
ybdQ S0531 hypothetical proteinRecName: Full=Universal stress protein G; chromosome CDS543178 429 - 0.501166
ybeJ S0648 putative periplasmic binding transport proteinSubName: Full=Putative periplasmic binding transport protein; chromosome CDS659005 909 + 0.487349
ybeZ S0644 putative ATP-binding protein in pho regulonRecName: Full=PhoH-like protein; chromosome CDS654535 1080 + 0.539815
ybiI S0794 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS776972 267 - 0.509363
yccY S1051 putative phosphataseSubName: Full=Putative phosphatase; chromosome CDS1036098 459 - 0.51634
ydaA S1433 hypothetical proteinRecName: Full=Universal stress protein E; chromosome CDS1398562 951 - 0.505783
yeaG S1555 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1512927 1380 - 0.503623
yeaP S1545 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1505400 1026 - 0.478557
yebJ S1510 hypothetical proteinRecName: Full=ProP effector; chromosome CDS1471492 120 + 0.525
yedV S2112 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2015585 1359 - 0.394408
yedW S2113 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS2016943 672 - 0.446429
yehT S2324 hypothetical proteinRecName: Full=Uncharacterized response regulatory protein yehT; chromosome CDS2203991 720 - 0.490278
yehU S2325 putative 2-component sensor proteinRecName: Full=Sensor histidine kinase YehU; EC=2.7.13.3; chromosome CDS2204707 1686 - 0.507711
yeiL S2377 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS2257238 579 + 0.435233
yfhA S2773 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS2665927 1335 - 0.543071
yfhK S2775 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2668129 1491 - 0.52381
ygaA S2923 putative 2-component transcriptional regulatorRecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; chromosome CDS2799083 1590 - 0.556604
ygaG S2901 hypothetical proteinRecName: Full=S-ribosylhomocysteine lyase; EC=4.4.1.21; AltName: Full=AI-2 synthesis protein; AltName: Full=Autoinducer-2 production protein LuxS; chromosome CDS2782751 516 - 0.515504
ygiM S3301 hypothetical proteinRecName: Full=Uncharacterized protein YgiM; Flags: Precursor; chromosome CDS3178995 621 + 0.523349
ygiX S3270 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS3151702 660 + 0.513636
ygiY S3271 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS3152358 1275 + 0.52549
yhdA S3507 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3379046 1941 - 0.504894
yhdW S3521 putative periplasmic binding transport proteinSubName: Full=Putative periplasmic binding transport protein; chromosome CDS3391510 918 + 0.489107
yhjB S4215 putative regulatorSubName: Full=Putative regulator; chromosome CDS4131438 603 + 0.47927
yhjH S4210 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4124145 768 + 0.528646
yhjK S4206 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4117746 1950 + 0.524103
yihK S3805 putative GTP-binding factorRecName: Full=GTP-binding protein TypA/BipA; AltName: Full=Tyrosine phosphorylated protein A; chromosome CDS3700414 1824 - 0.53125
yiiT S3746 putative regulatorRecName: Full=Universal stress protein D; chromosome CDS3644515 429 - 0.431235
yjaI S3661 hypothetical proteinRecName: Full=Zinc resistance-associated protein; Flags: Precursor; chromosome CDS3552409 567 + 0.516755
yjdG S3631 putative 2-component transcriptional regulatorRecName: Full=Transcriptional regulatory protein DcuR; chromosome CDS3512930 720 - 0.501389
yjdH S3632 putative 2-component sensor proteinRecName: Full=Sensor histidine kinase DcuS; EC=2.7.13.3; chromosome CDS3513646 1632 - 0.501838
yjiY S4642 putative carbon starvation proteinSubName: Full=Putative carbon starvation protein; chromosome CDS4535482 2166 - 0.562789
ylaB S0409 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS413399 1551 - 0.477112
ylcA S0480 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS488467 684 - 0.54386
ynaF S1449 putative filament proteinRecName: Full=Universal stress protein F; chromosome CDS1413141 507 - 0.473373
yojN S2431 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2314348 2673 + 0.491957