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Gene list

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COG category: Function unknown
Genomic element: pCP301

Number of genes found: 9

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# Shigella flexneri 2a str. 301, 301

>CP0110 orf, conserved hypothetical protein
ATGATATACGGAGGCTTTATGAAATCAGGTGTTCAGCTCAATCTCAGAGC
AAGAGAATCACAGCGGATACTCATTGATGCTGCTGCAGAAATTCTTCATA
AGTCGCGTACAGATTTCATTCTGGAAATGGCCTGTAAAGCTGCTGAAGAT
GTTATTCTCGACCGGCGGGTGTTTAATTTTAATGACAGGCAATATGAAGA
GTTCATTGAAATGCTTGATGCTCCGGTTGCAGATGATCCTGCCATCGAAA
AATTGCTGGCAAGGAAACCTCAATGGGATGTGTAA
>CP0060 orf, conserved hypothetical protein
ATGGAGGTTTTTATGTCTACAGCTGCAAGCGTCCGTAAAACACCGCGAGA
ACATCAGATTAACATCCGGGCAACTGATGAGGAACGAGCCGTTATTGATT
ATGCTGCGAGCTTGGTCAATAAGAACCGTACCGATTTCATCATGGAACTG
GCGTACCAGGAAGCTAAAAACATTATCCTGGATCAACGTTTATTTGTGCT
GGATAACGAACGTTATGATTCGTTTATTACGCAACTGGAAGCTCCTGTGC
AGAATGCAGAAGGGCGTGAACGTCTGATGGCGGTAAAGCCTGAATGGAAA
TAA
>CP0265 ipaH1.4, invasion plasmid antigen, secreted by the Mxi-Spa secretion machinery
ATGATTAAATCAACCAATATACAGGCAATCGGTTCTGGCATTATGCATCA
AATAAACAATGTATACTCGTTAACTCCATTATCTTTACCTATGGAACTGA
CTCCATCTTGTAATGAATTTTATTTAAAAACCTGGAGCGAATGGGAAAAG
AACGGTACCCCAGGCGAGCAACGCAATATCGCCTTCAATAGGCTGAAAAT
ATGTTTACAAAATCAAGAGGCAGAATTAAATTTATCTGAGTTAGATTTAA
AAACATTACCAGATTTACCGCCTCAGATAACAACACTGGAAATAAGAAAA
AACCTATTAACACATCTCCCTGATTTACCACCAATGCTTAAGGTAATACA
TGCTCAATTTAATCAACTGGAAAGCTTACCTGCCTTACCCGAGACGTTAG
AAGAGCTTAATGCGGGTGATAACAAGATAAAAGAATTACCATTTCTTCCT
GAAAATCTAACTCATTTACGGGTTCATAATAACCGATTGCATATTCTGCC
ACTATTGCCACCGGAACTAAAATTACTGGTAGTTTCTGGAAACAGATTAG
ACAGCATTCCCCCCTTTCCAGATAAGCTTGAAGGGCTGGCTCTGGCTAAT
AATTTTATAGAACAACTACCGGAATTACCTTTTAGTATGAACAGGGCTGT
GCTAATGAATAATAATCTGACAACACTTCCGGAAAGTGTCCTGAGATTAG
CTCAGAATGCCTTCGTAAATGTTGCAGGTAATCCATTGTCTGGCCATACC
ATGCGTACACTACAACAAATAACCACCGGACCAGATTATTCTGGTCCTCA
AATATTTTTCTCTATGGGAAATTCTGCCACAATTTCCGCTCCAGAACACT
CCCTGGCTGATGCCGTGACAGCATGGTTCCCGGAAAACAAACAATCTGAT
GTATCACAGATATGGCATGCTTTTGAACATGAAGAGCATGCCAACACCTT
TTCCGCGTTCCTTGACCGCCTTTCCGATACCGTCTCTGCACGCAATACCT
CCGGATTCCGTGAACAGGTCGCTGCATGGCTGGAAAAACTCAGTGCCTCT
GCGGAGCTTCGACAGCAGTCTTTCGCTGTTGCTGCTGATGCCACTGAGAG
CTGTGAGGACCGTGTCGCGCTCACATGGAACAATCTCCGGAAAACCCTCC
TGGTCCATCAGGCATCAGAAGGCCTTTTCGATAATGATACCGGCGCTCTG
CTCTCCCTGGGCAGGGAAATGTTCCGCCTCGAAATTCTGGAGGACATTGC
CCGGGATAAAGTCAGAACTCTCCATTTTGTGGATGAGATAGAAGTCTACC
TGGCCTTCCAGACCATGCTCGCAGAGAAACTTCAGCTCTCTACTGCCGTG
AAGGAAATGCGTTTCTATGGCGTGTCGGGAGTGACAGCAAATGACCTCCG
CACTGCCGAAGCCATGGTCAGAAGCCGTGAAGAGAATGAATTTACGGACT
GGTTCTCCCTCTGGGGACCATGGCATGCTGTACTGAAGCGTACGGAAGCT
GACCGCTGGGCGCAGGCAGAAGAGCAGAAGTATGAGATGCTGGAGAATGA
GTACTCTCAGAGGGTGGCTGACCGGCTGAAAGCATCAGGTCTGAGCGGTG
ATGCGGATGCGGAGAGGGAAGCCGGTGCACAGGTGATGCGTGAGACTGAA
CAGCAGATTTACCGTCAGTTGACTGACGAGGTACTGGCCCTGCGATTGTC
TGAAAACGGCTCAAATCATATCGCATAA
>CP0054 ipaH2.5, invasion plasmid antigen, probably secreted by the Mxi-Spa machinery
ATGATTAAATCAACGAATATACAGGTAATCGGTTCTGGTATTATGCATCA
AATAAACAACATACACTCGTTAACTCTATTTTCTTTGCCTGTGAGTTTGA
GTCCATCTTGTAATGAATATTATTTAAAAGTCTGGAGTGAATGGGAAAGG
AACGGTACCCCAGGCGAGCAACGCAATATCGCCTTCAATAGGCTGAAAAT
ATGTTTACAAAATCAAGAGGCAGAATTAAATTTATCTGAGTTAGATTTAA
AAACATTACCAGATTTACCGCCTCAGATAACAACACTGGAAATAAGAAAA
AACCTATTAACACATCTCCCTGATTTACCACCAATGCTTAAGGTAATACA
TGCTCAATTTAATCAACTGGAAAGCTTACCTGCCTTACCCGAGACGTTAG
AAGAGCTTAATGCGGGTGATAACAAGATAAAAGAATTACCATTTCTTCCT
GAAAATCTAACTCATTTACGGGTTCATAATAACCGATTGCATATTCTGCC
ACTATTGCCACCGGAACTAAAATTACTGGTAGTTTCTGGAAACAGATTAG
ACAGCATTCCCCCCTTTCCAGATAAGCTTGAAGGGCTGGCTCTGGCTAAT
AATTTTATAGAACAACTACCGGAATTACCTTTTAGTATGAACAGGGCTGT
GCTAATGAATAATAATCTGACAACACTTCCGGAAAGTGTCCTGAGATTAG
CTCAGAATGCCTTCGTAAATGTTGCAGGTAATCCATTGTCTGGCCATACC
ATGCGTACACTACAACAAATAACCACCGGACCAGATTATTCTGGTCCTCA
AATATTTTTCTCTATGGGAAATTCTGCCACAATTTCCGCTCCAGAACACT
CCCTGGCTGATGCCGTGACAGCATGGTTCCCGGAAAACAAACAATCTGAT
GTATCACAGATATGGCATGCTTTTGAACATGAAGAGCATGCCAACACCTT
TTCCGCGTTCCTTGACCGCCTTTCCGATACCGTCTCTGCACGCAATACCT
CCGGATTCCGTGAACAGGTCGCTGCATGGCTGGAAAAACTCAGTGCCTCT
GCGGAGCTTCGACAGCAGTCTTTCGCTGTTGCTGCTGATGCCACTGAGAG
CTGTGAGGACCGTGTCGCGCTCACATGGAACAATCTCCGGAAAACCCTCC
TGGTCCATCAGGCATCAGAAGGCCTTTTCGATAATGATACCGGCGCTCTG
CTCTCCCTGGGCAGGGAAATGTTCCGCCTCGAAATTCTGGAGGACATTGC
CCGGGATAAAGTCAGAACTCTCCATTTTGTGGATGAGATAGAAGTCTACC
TGGCCTTCCAGACCATGCTCGCAGAGAAACTTCAGCTCTCTACTGCCGTG
AAGGAAATGCGTTTCTATGGCGTGTCGGGAGTGACAGCAAATGACCTCCG
CACTGCCGAAGCCATGGTCAGAAGCCGTGAAGAGAATGAATTTACGGACT
GGTTCTCCCTCTGGGGACCATGGCATGCTGTACTGAAGCGTACGGAAGCT
GACCGCTGGGCGCAGGCAGAAGAGCAGAAGTATGAGATGCTGGAGAATGA
GTACTCTCAGAGGGTGGCTGACCGGCTGAAAGCATCAGGTCTGAGCGGTG
ATGCGGATGCGGAGAGGGAAGCCGGTGCACAGGTGATGCGTGAGACTGAA
CAGCAGATTTACCGTCAGTTGACTGACGAGGTACTGGCCTGA
>CP0079 ipaH4.5, invasion plasmid antigen, probably secreted by the Mxi-Spa machinery
ATGAAACCGATCAACAATCATTCTTTTTTTCGTTCCCTTTGTGGCTTATC
ATGTATATCTCGTTTATCGGTAGAAGAACAGTGTACCAGAGATTACCACC
GCATCTGGGATGACTGGGCTAGGGAAGGAACAACAACAGAAAATCGCATC
CAGGCGGTTCGATTATTGAAAATATGTCTGGATACCCGGGAGCCTGTTCT
CAATTTAAGCTTACTGAAACTACGTTCTTTACCACCACTCCCTTTGCATA
TACGTGAACTTAATATTTCCAACAATGAGTTAATCTCCCTACCTGAAAAT
TCTCCGCTTTTGACAGAACTTCATGTAAATGGTAACAACTTGAATATACT
CCCGACACTTCCATCTCAACTGATTAAGCTTAATATTTCATTCAATCGAA
ATTTGTCATGTCTGCCATCATTACCACCATATTTACAATCACTCTCGGCA
CGTTTTAATAGTCTGGAGACGTTACCAGAGCTTCCATCAACGCTAACAAT
ATTACGTATTGAAGGTAATCGCCTTACTGTCTTGCCTGAATTGCCTCATA
GACTACAAGAACTCTTTGTTTCCGGCAACAGACTACAGGAACTACCAGAA
TTTCCTCAGAGCTTAAAATATTTGAAGGTAGGTGAAAATCAACTACGCAG
ATTATCCAGATTACCGCAAGAACTATTGGCACTGGATGTTTCCAACAACC
TACTAACTTCATTACCCGAAAATATAATCACATTGCCCATTTGTACGAAT
GTTAACATTTCAGGGAATCCATTGTCGACTCACGTTCTGCAATCCCTGCA
AAGATTAACCTCTTCGCCGGACTACCACGGCCCGCAGATTTACTTCTCCA
TGAGTGACGGACAACAGAATACACTCCATCGCCCCCTGGCTGATGCCGTG
ACAGCATGGTTCCCGGAAAACAAACAATCTGATGTATCACAGATATGGCA
TGCTTTTGAACATGAAGAGCATGCCAACACCTTTTCCGCGTTCCTTGACC
GCCTTTCCGATACCGTCTCTGCACGCAATACCTCCGGATTCCGTGAACAG
GTCGCTGCATGGCTGGAAAAACTCAGTGCCTCTGCGGAGCTTCGACAGCA
GTCTTTCGCTGTTGCTGCTGATGCCACTGAGAGCTGTGAGGACCGTGTCG
CGCTCACATGGAACAATCTCCGGAAAACCCTCCTGGTCCATCAGGCATCA
GAAGGCCTTTTCGATAATGATACCGGCGCTCTGCTCTCCCTGGGCAGGGA
AATGTTCCGCCTCGAAATTCTGGAGGACATTGCCCGGGATAAAGTCAGAA
CTCTCCATTTTGTGGATGAGATAGAAGTCTACCTGGCCTTCCAGACCATG
CTCGCAGAGAAACTTCAGCTCTCTACTGCCGTGAAGGAAATGCGTTTCTA
TGGCGTGTCGGGAGTGACAGCAAATGACCTCCGCACTGCCGAAGCCATGG
TCAGAAGCCGTGAAGAGAATGAATTTACGGACTGGTTCTCCCTCTGGGGA
CCATGGCATGCTGTACTGAAGCGTACGGAAGCTGACCGCTGGGCGCAGGC
AGAAGAGCAGAAGTATGAGATGCTGGAGAATGAGTACTCTCAGAGGGTGG
CTGACCGGCTGAAAGCATCAGGTCTGAGCGGTGATGCGGATGCGGAGAGG
GAAGCCGGTGCACAGGTGATGCGTGAGACTGAACAGCAGATTTACCGTCA
GTTGACTGACGAGGTACTGGCCTGA
>CP0078 ipaH7.8, invasion plasmid antigen, probably secreted by the Mxi-Spa machinery
ATGTTCTCTGTAAATAATACACACTCATCAGTTTCTTGCTCCCCCTCTAT
TAACTCAAACTCAACCAGTAATGAACATTATCTGAGAATCCTGACTGAAT
GGGAAAAGAACTCTTCTCCCGGGGAAGAGCGAGGCATTGCTTTTAACAGA
CTCTCCCAGTGCTTTCAGAATCAAGAAGCAGTATTAAATTTATCAGACCT
AAATTTGACGTCTCTTCCCGAATTACCAAAGCATATTTCTGCTTTGATTG
TAGAAAATAATAAATTAACATCATTGCCAAAGCTGCCTGCATTTCTTAAA
GAACTTAATGCTGATAATAACAGGCTTTCTGTGATACCAGAACTTCCTGA
GTCATTAACAACTTTAAGTGTTCGTTCTAATCAACTGGAAAACCTTCCTG
TTTTGCCAAACCATTTAACATCATTATTTGTTGAAAATAACAGGCTATAT
AACTTACCGGCTCTTCCCGAAAAATTGAAATTTTTACATGTTTATTATAA
CAGGCTGACAACATTACCCGACTTACCGGATAAACTGGAAATTCTCTGTG
CTCAGCGCAATAATCTGGTTACTTTTCCTCAATTTTCTGATAGAAACAAT
ATCAGACAAAAGGAATATTATTTTCATTTTAATCAGATAACCACTCTTCC
GGAGAGTTTTTCACAATTAGATTCAAGTTACAGGATTAATATTTCAGGGA
ATCCATTGTCGACTCGCGTTCTGCAATCCCTGCAAAGATTAACCTCTTCG
CCGGACTACCACGGCCCACAGATTTACTTCTCCATGAGTGACGGACAACA
GAATACACTCCATCGCCCCCTGGCTGATGCCGTGACAGCATGGTTCCCGG
AAAACAAACAATCTGATGTATCACAGATATGGCATGCTTTTGAACATGAA
GAGCATGCCAACACCTTTTCCGCGTTCCTTGACCGCCTTTCCGATACCGT
CTCTGCACGCAATACCTCCGGATTCCGTGAACAGGTCGCTGCATGGCTGG
AAAAACTCAGTGCCTCTGCGGAGCTTCGACAGCAGTCTTTCGCTGTTGCT
GCTGATGCCACTGAGAGCTGTGAGGACCGTGTCGCGCTCACATGGAACAA
TCTCCGGAAAACCCTCCTGGTCCATCAGGCATCAGAAGGCCTTTTCGATA
ATGATACCGGCGCTCTGCTCTCCCTGGGCAGGGAAATGTTCCGCCTCGAA
ATTCTGGAGGACATTGCCCGGGATAAAGTCAGAACTCTCCATTTTGTGGA
TGAGATAGAAGTCTACCTGGCCTTCCAGACCATGCTCGCAGAGAAACTTC
AGCTCTCTACTGCCGTGAAGGAAATGCGTTTCTATGGCGTGTCGGGAGTG
ACAGCAAATGACCTCCGCACTGCCGAAGCCATGGTCAGAAGCCGTGAAGA
GAATGAATTTACGGACTGGTTCTCCCTCTGGGGACCATGGCATGCTGTAC
TGAAGCGTACGGAAGCTGACCGCTGGGCGCAGGCAGAAGAGCAGAAGTAT
GAGATGCTGGAGAATGAGTACTCTCAGAGGGTGGCTGACCGGCTGAAAGC
ATCAGGTCTGAGCGGTGATGCGGATGCGGAGAGGGAAGCCGGTGCACAGG
TGATGCGTGAGACTGAACAGCAGATTTACCGTCAGTTGACTGACGAGGTA
CTGGCCCTGCGATTGTCTGAAAACGGCTCACGACTGCACCATTCATAA
>CP0226 ipaH9.8, invasion plasmid antigen, secreted by the Mxi-Spa secretion machinery
ATGTTACCGATAAATAATAACTTTTCATTGCCCCAAAATTCTTTTTATAA
CACTATTTCCGGTACATATGCTGATTACTTTTCAGCATGGGATAAATGGG
AAAAACAAGCGCTCCCCGGTGAAGAGCGTGATGAGGCTGTCTCCCGACTT
AAAGAATGTCTTATCAATAATTCCGATGAACTTCGACTGGACCGTTTAAA
TCTGTCCTCGCTACCTGACAACTTACCAGCTCAGATAACGCTGCTCAATG
TATCATATAATCAATTAACTAACCTACCTGAACTGCCTGTTACGCTAAAA
AAATTATATTCCGCCAGCAATAAATTATCAGAATTGCCCGTGCTACCTCC
TGCGCTGGAGTCACTTCAGGTACAACACAATGAGCTGGAAAACCTGCCAG
CTTTACCCGATTCGTTATTGACTATGAATATCAGCTATAACGAAATAGTC
TCCTTACCATCGCTCCCACAGGCTCTTAAAAATCTCAGAGCGACCCGTAA
TTTCCTCACTGAGCTACCAGCATTTTCTGAGGGAAATAATCCCGTTGTCA
GAGAGTATTTTTTTGATAGAAATCAGATAAGTCATATCCCGGAAAGCATT
CTTAATCTGAGGAATGAATGTTCAATACATATTAGTGATAACCCATTATC
ATCCCATGCTCTGCCAGCCCTGCAAAGATTAACCTCTTCGCCGGACTACC
ACGGCCCACGGATTTACTTCTCCATGAGTGACGGACAACAGAATACACTC
CATCGCCCCCTGGCTGATGCCGTGACAGCATGGTTCCCGGAAAACAAACA
ATCTGATGTATCACAGATATGGCATGCTTTTGAACATGAAGAGCATGCCA
ACACCTTTTCCGCGTTCCTTGACCGCCTTTCCGATACCGTCTCTGCACGC
AATACCTCCGGATTCCGTGAACAGGTCGCTGCATGGCTGGAAAAACTCAG
TGCCTCTGCGGAGCTTCGACAGCAGTCTTTCGCTGTTGCTGCTGATGCCA
CTGAGAGCTGTGAGGACCGTGTCGCGCTCACATGGAACAATCTCCGGAAA
ACCCTCCTGGTCCATCAGGCATCAGAAGGCCTTTTCGATAATGATACCGG
CGCTCTGCTCTCCCTGGGCAGGGAAATGTTCCGCCTCGAAATTCTGGAGG
ATATTGCCCGGGATAAAGTCAGAACTCTCCATTTTGTGGATGAGATAGAA
GTCTACCTGGCCTTCCAGACCATGCTCGCAGAGAAACTTCAGCTCTCCAC
TGCCGTGAAGGAAATGCGTTTCTATGGCGTGTCGGGAGTGACAGCAAATG
ACCTCCGCACTGCCGAAGCCATGGTCAGAAGCCGTGAAGAGAATGAATTT
ACGGACTGGTTCTCCCTCTGGGGACCATGGCATGCTGTACTGAAGCGTAC
GGAAGCTGACCGCTGGGCGCAGGCAGAAGAGCAGAAATATGAGATGCTGG
AGAATGAGTACCCTCAGAGGGTGGCTGACCGGCTGAAAGCATCAGGTCTG
AGCGGTGATGCGGATGCGGAGAGGGAAGCCGGTGCACAGGTGATGCGTGA
GACTGAACAGCAGATTTACCGTCAGCTGACTGACGAGGTACTGGCCCTGC
GATTGCCTGAAAACGGCTCACAACTGCACCATTCATAA
>CP0246 mvpT, plasmid maintenance protein
ATGGAAACCACCGTATTTCTCAGCAACCGCAGCCAGGCGGTCAGACTGCC
AAAAGCGGTTGCATTGCCGGAAAACGTAAAACGCGTTGAAGTGATTGCTG
TCGGACGAACCAGAATCATTACGCCAGCCGGAGAGACATGGGACGAATGG
TTCGACGGACACAGCGTCAGCACCGATTTTATGGATAACAGGGAACAGCC
CGGCATGCAAGAAAGGGAGTCATTCTGA
>CP0237 virK, VirK, required for proper localization of IcsA (VirG) at the surface of bacteria
ATGTTTTCTGTAAGTAACTTATCATTTATCGGTTTCCTTAAAAGGATTGT
TTTTTCCTCAGATTCACTCCCGGGGAAGTGGGAACACAGAAAATTCCGGT
TCATGTACATTTTGCGATGTGCTATAAATCCGGTTGCCAGTATTCGATAT
TATTACGAACTGCGTTCCTTGCAGTGCATTGAGGATATTCTGGCAATACA
ACCCACGTTGCCAGCAAGAATTCATCGACCTTATTTGCATAAAGGGGGGC
GAGCCTGGTCCCGGGGGCAATATATTCTTGAGCATTATCGCTTTGTGCAA
AATTTGCCAGAAAAATATTCTGAATTTTTGTTTCCACAAAAATCGGTATC
ATTAGTCCAATTCATCGGGAAAGATGGAGAGGATTTTGATATCCAGTGTT
CTCCCAGTGGTTTTGACCGGGAAGGAGAGTTGATGTTGTCATTGTTTTTC
AATAAAATAGTGATTGCCCGGTTAACATTTTCAGTCATTCTGACTCAAAA
TGGACACACCGCTTTTATTGGCGGATTACAGGGAGCCCCCAAAAATACCG
GACCTGATATTATTCGGTGCGCAACCCGGGCCTGTTATGGGCTTTTCCCA
AAACGGATTATTTTTGAAGCATTTTGTGCGTTGATGAAAGCTTGTAATGT
CTCTGAGTGTCTGGCAGTCAGTGAGCACAGTCATGTTTTCCGGCAATTGA
GATACTGGTATCAGAAACGCAAAACCTTTGTTGCTGTCTACAGTGATTTC
TGGGAGTCTGTAGCAGGGAAAACCTGTGGTGACTGGTACAAATTACCAAC
ACAGGTGGTTCGAAAGCCGCTAAGCAATATAGCTAGTAAAAAACGCTCTG
AGTATCGAAAACGATACGCTTTGCTGGATTATATCCATGAAACTGCTATC
CGCTCTTTGGATGCATATCCTGTAAACTCAGAACATTATGACTTAAATTA
A