Gene list
Applied filters:
COG category: Secondary metabolites biosynthesis, transport and catabolism
Genomic element: chromosome
Number of genes found: 115
 | ||||||
| Hide UniProt / TrEMBL protein name | |
View in Fasta format (DNA) | |
View in Fasta format (Protein) | |
|
| ||||||
| Saccharophagus degradans 2-40, 2-40 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Sde_0124 | short chain dehydrogenase family protein | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 156003 | 660 | + | 0.521212 |
| NA | Sde_3519 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4473595 | 672 | - | 0.474702 |
| NA | Sde_3645 | DNA repair protein RadC | SubName: Full=Methionine biosynthesis MetW; | chromosome | CDS | 4621872 | 597 | + | 0.453936 |
| NA | Sde_1852 | methyltransferase, putative | RecName: Full=tRNA (mo5U34)-methyltransferase; EC=2.1.1.-; | chromosome | CDS | 2342927 | 978 | - | 0.48773 |
| NA | Sde_1853 | methyltransferase | RecName: Full=tRNA (cmo5U34)-methyltransferase; EC=2.1.1.-; | chromosome | CDS | 2343901 | 738 | - | 0.48103 |
| NA | Sde_1283 | 2-deoxy-D-gluconate 3-dehydrogenase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 1646062 | 777 | + | 0.469755 |
| NA | Sde_1766 | NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit | SubName: Full=N-acetyltransferase; | chromosome | CDS | 2253912 | 801 | - | 0.40824 |
| NA | Sde_3493 | conserved hypothetical protein | SubName: Full=Amino acid adenylation; | chromosome | CDS | 4448057 | 1572 | + | 0.468193 |
| NA | Sde_0176 | Methylase involved in ubiquinone/menaquinone biosynthesis-like | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 217187 | 783 | - | 0.408685 |
| NA | Sde_2377 | oxidoreductase, short-chain dehydrogenase/reductase family | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 3014930 | 822 | - | 0.523114 |
| NA | Sde_2469 | TonB-dependent receptor | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 3120444 | 798 | - | 0.447368 |
| NA | Sde_1630 | Pyridoxal phosphate-dependent deaminase | RecName: Full=Acyl carrier protein; Short=ACP; | chromosome | CDS | 2093907 | 237 | + | 0.383966 |
| NA | Sde_3934 | H+-transporting two-sector ATPase, gamma subunit | SubName: Full=Acriflavin resistance protein; | chromosome | CDS | 4955242 | 3129 | + | 0.493768 |
| NA | Sde_1118 | AcrB/AcrD/AcrF family protein | SubName: Full=Acriflavin resistance protein; | chromosome | CDS | 1446310 | 3132 | - | 0.483716 |
| NA | Sde_1292 | secretion protein, HlyD family | SubName: Full=Type I secretion membrane fusion protein, HlyD; | chromosome | CDS | 1656458 | 1386 | + | 0.467532 |
| NA | Sde_1294 | Polyhydroxyalkanoate synthesis repressor PhaR | SubName: Full=VCBS domain protein; | chromosome | CDS | 1659454 | 24966 | + | 0.463831 |
| NA | Sde_2050 | Aspartate-semialdehyde dehydrogenase | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 2629697 | 696 | - | 0.422414 |
| NA | Sde_3236 | GAF domain protein | SubName: Full=GAF domain protein; | chromosome | CDS | 4123453 | 1737 | - | 0.496834 |
| NA | Sde_0726 | ATPase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 938921 | 741 | - | 0.496626 |
| NA | Sde_0315 | Phosphoenolpyruvate-protein phosphotransferase | SubName: Full=Multicopper oxidase, type 3; | chromosome | CDS | 389554 | 1710 | + | 0.469006 |
| NA | Sde_2448 | Membrane-fusion protein-like | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 3095296 | 1080 | - | 0.45 |
| NA | Sde_1956 | hypothetical protein | SubName: Full=Putative RND efflux system protein, MFP subunit; | chromosome | CDS | 2461730 | 1077 | - | 0.472609 |
| NA | Sde_3492 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 4447791 | 264 | + | 0.409091 |
| NA | Sde_3393 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 4325115 | 747 | - | 0.475234 |
| NA | Sde_1631 | Sodium:alanine symporter | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; | chromosome | CDS | 2094334 | 1233 | + | 0.48013 |
| NA | Sde_2269 | RND family efflux transporter | SubName: Full=Acriflavin resistance protein; | chromosome | CDS | 2881017 | 3120 | + | 0.478846 |
| NA | Sde_3728 | Oleoyl-(acyl-carrier protein) hydrolase | SubName: Full=Oleoyl-(Acyl-carrier protein) hydrolase; EC=3.1.2.14; | chromosome | CDS | 4726132 | 762 | - | 0.434383 |
| NA | Sde_3527 | MATE efflux family protein | SubName: Full=Multi antimicrobial extrusion protein MatE; | chromosome | CDS | 4480780 | 1332 | - | 0.485736 |
| NA | Sde_2923 | ABC transporter, ATP-binding protein | SubName: Full=ABC transporter related; | chromosome | CDS | 3707219 | 927 | + | 0.461704 |
| NA | Sde_3400 | isochorismate synthase; RBL00457 | SubName: Full=Isochorismate synthase; | chromosome | CDS | 4335363 | 1266 | - | 0.491311 |
| NA | Sde_2456 | hypothetical protein | SubName: Full=Phosphopantetheine-binding; | chromosome | CDS | 3104556 | 261 | - | 0.40613 |
| NA | Sde_3936 | H+-transporting two-sector ATPase, delta (OSCP) subunit | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 4961625 | 1476 | - | 0.480352 |
| NA | Sde_0309 | HlyD family secretion protein | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 381566 | 1251 | - | 0.466027 |
| NA | Sde_0171 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 211434 | 240 | + | 0.420833 |
| NA | Sde_3095 | AcrB/AcrD/AcrF family protein | SubName: Full=Acriflavin resistance protein; | chromosome | CDS | 3948636 | 3282 | - | 0.448812 |
| NA | Sde_2268 | membrane-fusion protein | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 2879749 | 1272 | + | 0.485849 |
| NA | Sde_0079 | Cellulose binding, type IV | SubName: Full=Phosphopantetheinyl transferase-like protein; | chromosome | CDS | 100894 | 777 | + | 0.47619 |
| NA | Sde_3725 | Polyketide synthase modules and related proteins-like | SubName: Full=Amino acid adenylation; | chromosome | CDS | 4713460 | 9336 | + | 0.474614 |
| NA | Sde_3521 | oxidoreductase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 4475769 | 762 | + | 0.511811 |
| NA | Sde_0407 | hypothetical protein | SubName: Full=Type IV pilus assembly PilZ; | chromosome | CDS | 503837 | 363 | - | 0.509642 |
| NA | Sde_2646 | Phosphatidylserine decarboxylase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 3347386 | 777 | - | 0.492922 |
| NA | Sde_2442 | putative short-chain dehydrogenase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 3087378 | 696 | + | 0.465517 |
| NA | Sde_3620 | conserved hypothetical protein | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 4593855 | 1041 | + | 0.433237 |
| NA | Sde_2612 | conserved hypothetical protein | RecName: Full=Ribosomal RNA small subunit methyltransferase J; EC=2.1.1.242; AltName: Full=16S rRNA m2G1516 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; | chromosome | CDS | 3308568 | 810 | - | 0.5 |
| NA | Sde_0035 | DNA-damage-inducible protein F | SubName: Full=MATE efflux family protein; | chromosome | CDS | 40360 | 1551 | - | 0.488072 |
| NA | Sde_3235 | peptidase, M50 family | SubName: Full=Peptidase, M50 family; | chromosome | CDS | 4121314 | 2136 | - | 0.465824 |
| NA | Sde_3524 | ABC transporter, ATP-binding protein | SubName: Full=ABC transporter related; | chromosome | CDS | 4478580 | 834 | - | 0.440048 |
| NA | Sde_0165 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 203758 | 240 | + | 0.416667 |
| NA | Sde_3610 | ABC transporter ATP-binding protein | SubName: Full=ABC transporter related; | chromosome | CDS | 4576100 | 750 | - | 0.477333 |
| NA | Sde_2455 | histidine kinase | SubName: Full=Histidine kinase; EC=2.7.3.-; | chromosome | CDS | 3104263 | 258 | - | 0.426357 |
| NA | Sde_1170 | Ribosomal protein S16 | SubName: Full=ABC transporter related; | chromosome | CDS | 1505235 | 957 | + | 0.445141 |
| NA | Sde_3096 | membrane-fusion protein | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 3951917 | 1197 | - | 0.502924 |
| NA | Sde_1219 | Peptidoglycan-binding LysM | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 1566451 | 843 | + | 0.478055 |
| NA | Sde_1544 | Threonyl-tRNA synthetase, class IIa | SubName: Full=Dienelactone hydrolase; | chromosome | CDS | 1990462 | 738 | + | 0.460705 |
| NA | Sde_3767 | putative transcriptional regulator, Fis family | SubName: Full=Biotin/lipoyl attachment; | chromosome | CDS | 4767275 | 1107 | + | 0.469738 |
| NA | Sde_3826 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4826078 | 597 | + | 0.507538 |
| NA | Sde_3397 | putative non-ribosomal peptide synthetase | SubName: Full=Condensation domain; | chromosome | CDS | 4330475 | 2205 | - | 0.447619 |
| NA | Sde_0484 | putative methyltransferase | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 596464 | 723 | - | 0.50899 |
| NA | Sde_3007 | N-acetylglucosamine-6-phosphate deacetylase | SubName: Full=Putative pectate lyase; | chromosome | CDS | 3835207 | 1275 | - | 0.437647 |
| NA | Sde_3502 | putative oxidoreductase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 4457641 | 735 | + | 0.45034 |
| NA | Sde_3398 | Alkylhydroperoxidase AhpD core | SubName: Full=Isochorismatase; EC=3.3.2.1; | chromosome | CDS | 4332672 | 960 | - | 0.458333 |
| NA | Sde_3489 | putative secretion protein | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 4443407 | 1182 | - | 0.401015 |
| NA | Sde_2447 | RND family efflux transporter | SubName: Full=Acriflavin resistance protein; | chromosome | CDS | 3092071 | 3162 | - | 0.447818 |
| NA | Sde_2842 | ATP-binding protein of ABC transporter | SubName: Full=ABC transporter related; | chromosome | CDS | 3591589 | 954 | - | 0.454927 |
| NA | Sde_1629 | YajC | SubName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; EC=1.1.1.100; | chromosome | CDS | 2092884 | 744 | + | 0.469086 |
| NA | Sde_0292 | conserved hypothetical protein | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 362987 | 732 | - | 0.491803 |
| NA | Sde_0526 | TonB-dependent receptor | SubName: Full=ABC transporter related; | chromosome | CDS | 650063 | 1827 | - | 0.468528 |
| NA | Sde_0328 | ABC transporter permease | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 409270 | 1305 | + | 0.449808 |
| NA | Sde_0771 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 995202 | 771 | + | 0.50454 |
| NA | Sde_3933 | ATP synthase F1, beta subunit | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 4954062 | 1188 | + | 0.527778 |
| NA | Sde_1603 | putative beta-ketoacyl synthase | SubName: Full=Beta-ketoacyl synthase; | chromosome | CDS | 2059034 | 1857 | + | 0.488961 |
| NA | Sde_0177 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 218019 | 783 | - | 0.458493 |
| NA | Sde_2451 | thioesterase involved in non-ribosomal peptide biosynthesis-like | SubName: Full=Thioesterase; | chromosome | CDS | 3098702 | 786 | - | 0.473282 |
| NA | Sde_2457 | beta-ketoacyl-acyl carrier protein synthase II | SubName: Full=Beta-ketoacyl-acyl carrier protein synthase; EC=2.3.1.41; | chromosome | CDS | 3104884 | 1329 | - | 0.436418 |
| NA | Sde_1324 | D-beta-hydroxybutyrate dehydrogenase | SubName: Full=3-hydroxybutyrate dehydrogenase; | chromosome | CDS | 1719603 | 783 | + | 0.464879 |
| NA | Sde_1475 | TonB-dependent receptor | SubName: Full=rRNA (Guanine-N(1)-)-methyltransferase; | chromosome | CDS | 1897463 | 885 | + | 0.422599 |
| NA | Sde_2022 | generic methyl-transferase | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 2546432 | 885 | - | 0.465537 |
| NA | Sde_0998 | beta-ketoacyl-ACP synthase I | SubName: Full=3-oxoacyl-[acyl-carrier-protein] synthase I; EC=2.3.1.41; | chromosome | CDS | 1280006 | 1218 | - | 0.510673 |
| NA | Sde_0380 | ATPase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 468285 | 741 | + | 0.491228 |
| NA | Sde_3736 | Na+ extrusion transport system ATP-binding protein | SubName: Full=ABC transporter related; | chromosome | CDS | 4736322 | 750 | - | 0.461333 |
| NA | Sde_1330 | beta-ketothiolase, acetoacetyl-CoA reductase | SubName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; EC=1.1.1.100; | chromosome | CDS | 1724437 | 723 | - | 0.449516 |
| NA | Sde_3137 | UDP-N-acetylglucosamine1-carboxyvinyltransferase | RecName: Full=Biotin biosynthesis bifunctional protein BioHC; Includes: RecName: Full=Carboxylesterase BioH; EC=3.1.1.1; AltName: Full=Biotin synthesis protein BioH; Includes: RecName: Full=Malonyl-[acyl-carrier protein] O-methyltransferase; Short=Malonyl-ACP O-methyltransferase; EC=2.1.1.197; AltName: Full=Biotin synthesis protein BioC; | chromosome | CDS | 4011089 | 1677 | - | 0.477042 |
| NA | Sde_1930 | Membrane-fusion protein-like | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 2431780 | 1890 | + | 0.461376 |
| NA | Sde_2152 | ATPase FliI/YscN | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 2745410 | 765 | + | 0.471895 |
| NA | Sde_3281 | Protein of unknown function DM13 | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 4190755 | 753 | - | 0.438247 |
| NA | Sde_1886 | Pseudouridine synthase, Rsu | SubName: Full=AMP-dependent synthetase and ligase; | chromosome | CDS | 2381162 | 1602 | + | 0.433833 |
| NA | Sde_3401 | conserved hypothetical phosphopantetheinyl transferase | SubName: Full=4-phosphopantetheinyl transferase; | chromosome | CDS | 4336899 | 729 | + | 0.45679 |
| NA | Sde_3726 | Phytoene dehydrogenase and related proteins-like | SubName: Full=FAD dependent oxidoreductase; | chromosome | CDS | 4722996 | 1761 | + | 0.469052 |
| NA | Sde_2283 | methyl-accepting chemotaxis sensory transducer | SubName: Full=Methyl-accepting chemotaxis sensory transducer; | chromosome | CDS | 2903787 | 1086 | + | 0.426335 |
| NA | Sde_0537 | conserved hypothetical protein | SubName: Full=MATE efflux family protein; | chromosome | CDS | 657878 | 1383 | + | 0.510484 |
| NA | Sde_0387 | lipid A ABC transporter, ATP-binding/permease protein | RecName: Full=Lipid A export ATP-binding/permease protein MsbA; EC=3.6.3.-; | chromosome | CDS | 477227 | 1761 | - | 0.465077 |
| NA | Sde_3396 | putative non-ribosomal peptide synthetase | SubName: Full=Thioester reductase; | chromosome | CDS | 4328007 | 2430 | - | 0.461317 |
| NA | Sde_1291 | 3-hydroxybutyrate dehydrogenase | SubName: Full=ABC transporter related; | chromosome | CDS | 1654333 | 2136 | + | 0.449438 |
| NA | Sde_0688 | Polyketide synthase modules and related proteins-like | SubName: Full=Beta-ketoacyl synthase; | chromosome | CDS | 877133 | 6783 | + | 0.46646 |
| NA | Sde_0048 | methyl-accepting chemotaxis sensory transducer | SubName: Full=Methyl-accepting chemotaxis sensory transducer; | chromosome | CDS | 52828 | 375 | + | 0.416 |
| NA | Sde_2453 | putative acyl-CoA synthase | SubName: Full=AMP-dependent synthetase and ligase; | chromosome | CDS | 3100767 | 1767 | - | 0.449349 |
| NA | Sde_0248 | conserved hypothetical protein | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 312012 | 747 | - | 0.449799 |
| NA | Sde_1866 | ATP binding protein of heme exporter A | RecName: Full=Cytochrome c biogenesis ATP-binding export protein CcmA; EC=3.6.3.41; AltName: Full=Heme exporter protein A; | chromosome | CDS | 2357809 | 672 | + | 0.473214 |
| NA | Sde_1859 | Gluconate transporter | SubName: Full=Methyltransferase type 12; | chromosome | CDS | 2351162 | 789 | + | 0.47782 |
| NA | Sde_2848 | histidine kinase | SubName: Full=Histidine kinase; EC=2.7.3.-; | chromosome | CDS | 3602041 | 654 | + | 0.43578 |
| NA | Sde_0162 | Methylase involved in ubiquinone/menaquinone biosynthesis-like | SubName: Full=Methyltransferase type 11; | chromosome | CDS | 200151 | 834 | + | 0.470024 |
| NA | Sde_3234 | conserved hypothetical protein | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 4120349 | 930 | - | 0.484946 |
| NA | Sde_0705 | Pyridoxal phosphate biosynthetic protein PdxA | SubName: Full=Uncharacterized protein; | chromosome | CDS | 915597 | 564 | - | 0.367021 |
| NA | Sde_2486 | Peptide chain release factor 3 | SubName: Full=5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; EC=4.1.1.68; | chromosome | CDS | 3138419 | 846 | - | 0.496454 |
| NA | Sde_0949 | gluconate 5-dehydrogenase, putative | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 1229763 | 795 | - | 0.481761 |
| NA | Sde_1756 | acriflavin resistance protein | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 2243684 | 1092 | + | 0.462454 |
| NA | Sde_3531 | conserved hypothetical protein | SubName: Full=AMP-dependent synthetase and ligase; | chromosome | CDS | 4484703 | 3492 | + | 0.480241 |
| NA | Sde_1119 | efflux transporter, RND family, MFP subunit | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 1449526 | 1110 | - | 0.484685 |
| NA | Sde_3399 | 2,3-dihydroxybenzoate-AMP ligase (enterobactin synthetase component E) | SubName: Full=AMP-dependent synthetase and ligase; | chromosome | CDS | 4333679 | 1692 | - | 0.481678 |
| NA | Sde_0761 | putative oxidoreductase | SubName: Full=Short-chain dehydrogenase/reductase SDR; | chromosome | CDS | 982746 | 768 | + | 0.502604 |
| NA | Sde_0689 | Polyketide synthase modules and related proteins-like | SubName: Full=Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ; | chromosome | CDS | 883923 | 9222 | + | 0.462156 |
| NA | Sde_2755 | conserved hypothetical protein | SubName: Full=SMC protein-like protein; | chromosome | CDS | 3487626 | 1113 | - | 0.456424 |
| NA | Sde_0471 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 574349 | 1008 | - | 0.499008 |
| NA | Sde_1947 | putative copper resistance transmembrane protein | SubName: Full=Copper-resistance protein CopA; | chromosome | CDS | 2447970 | 1884 | - | 0.541401 |
| NA | Sde_2782 | Multidrug resistance efflux pump-like | SubName: Full=Secretion protein HlyD; | chromosome | CDS | 3514849 | 1206 | + | 0.475954 |
|
Beutenbergstraße 11 D-07745 Jena • Germany |
Phone: +49 3641 65-6000 Fax: +49 3641 65-6351 |
E-mail: info@leibniz-fli.de www.leibniz-fli.de |
Data Privacy Imprint |
|