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2024-06-02 08:23:02

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Genomic element: chromosome 1

Number of genes found: 88

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Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA RSP_0919 Short-chain dehydrogenase/reductase SDRSubName: Full=Short-chain dehydrogenase/reductase SDR; chromosome 1 CDS2668910 858 + 0.668998
NA RSP_2255 Long-chain-fatty-acid--CoA ligaseSubName: Full=Acyl-CoA synthase; EC=6.2.1.-; chromosome 1 CDS872149 1890 + 0.682011
NA RSP_0890 possible protein yrbC precursorSubName: Full=Putative yrbC; chromosome 1 CDS2640924 624 - 0.685897
NA RSP_2458 ABC transporter, ATPase subunitSubName: Full=ABC transporter, ATPase subunit; chromosome 1 CDS1099436 747 - 0.670683
NA RSP_2655 conserved hypothetical protein chromosome 1 CDS1298787 399 - 0.716792
NA RSP_2852 Predicted polyketide biosynthesis associated proteinSubName: Full=Putative polyketide biosynthesis associated protein; chromosome 1 CDS1451545 645 + 0.703876
NA RSP_6005 Putative short chain dehydrogenaseSubName: Full=Putative short chain dehydrogenase; EC=1.1.1.100; chromosome 1 CDS124949 741 - 0.766532
NA RSP_0765 SAM-dependent methyltransferaseSubName: Full=SAM-dependent methyltransferase; chromosome 1 CDS2507492 642 - 0.713396
NA RSP_2857 D-beta-hydroxybutyrate dehydrogenase chromosome 1 CDS1443169 798 - 0.680451
NA RSP_1562 fumarylacetoacetate hydrolase family proteinSubName: Full=Fumarylacetoacetate hydrolase family protein; chromosome 1 CDS152005 687 - 0.692868
NA RSP_2858 IndA involved in pigment biosynthesisRecName: Full=Pseudouridine-5-phosphate glycosidase; Short=PsiMP glycosidase; EC=3.2.-.-; chromosome 1 CDS1442231 912 + 0.716009
NA RSP_0173 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydrataseSubName: Full=2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase; chromosome 1 CDS1889397 846 - 0.685579
NA RSP_0099 TRAP-T family sorbitol/mannitol transporter, DctQ (4TMs) subunitSubName: Full=TRAP-T family sorbitol/mannitol transporter, DctQ (4TMs) subunit; chromosome 1 CDS1811327 615 - 0.637398
NA RSP_0226 Naringenin-chalcone synthaseSubName: Full=Naringenin-chalcone synthase; EC=2.3.1.74; chromosome 1 CDS1944352 1050 + 0.722857
NA RSP_0914 Short-chain dehydrogenase/reductase SDRSubName: Full=Short-chain dehydrogenase/reductase SDR; chromosome 1 CDS2663533 753 - 0.723772
NA RSP_1087 Short-chain dehydrogenase/reductase family memberSubName: Full=Short-chain dehydrogenase/reductase family member; chromosome 1 CDS2844837 738 - 0.682927
NA RSP_1041 Malonyl CoA synthetaseSubName: Full=Malonyl-CoA synthase; chromosome 1 CDS2802063 1506 - 0.702523
NA RSP_2811 Putative ABC transporter, periplasmic substrate-binding proteinSubName: Full=Putative ABC transporter, periplasmic substrate-binding protein; chromosome 1 CDS1503743 966 - 0.697723
NA RSP_2203 hypothetical proteinSubName: Full=Uncharacterized protein, possibly involved in aromatic compounds catabolism; chromosome 1 CDS816645 507 + 0.692308
NA RSP_0610 Putative 3-oxoacyl-(acyl-carrier-protein) reductaseSubName: Full=Putative 3-oxoacyl-(Acyl-carrier-protein) reductase; EC=1.1.1.100; chromosome 1 CDS2349479 807 - 0.651797
NA RSP_2091 Putative benzoate transporter, BenESubName: Full=Putative benzoate transporter, BenE; chromosome 1 CDS690398 1146 - 0.746946
NA RSP_1561 AMP-forming acyl-CoA synthetase/ligaseSubName: Full=AMP-forming acyl-CoA synthetase/ligase; chromosome 1 CDS150337 1536 - 0.711589
NA RSP_0747 Short-chain dehydrogenase/reductaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase; EC=1.1.1.100; chromosome 1 CDS2490768 723 + 0.655602
NA RSP_0639 Putative N-methylhydantoinase BSubName: Full=Putative N-methylhydantoinase B; EC=3.5.2.14; chromosome 1 CDS2376335 1677 - 0.683363
NA RSP_0640 putative N-methylhydantoinase ASubName: Full=Putative N-methylhydantoinase A; EC=3.5.2.14; chromosome 1 CDS2378015 2019 - 0.705795
NA RSP_0028 Putative short-chain dehydrogenase/reductaseSubName: Full=Short chain dehydrogenase; chromosome 1 CDS1729383 999 + 0.744745
NA RSP_1601 conserved hypothetical proteinSubName: Full=Methylase involved in ubiquinone/menaquinone biosynthesis; chromosome 1 CDS198771 630 - 0.736508
NA RSP_2459 ABC transporter, inner membrane subunitSubName: Full=ABC transporter, inner membrane subunit; chromosome 1 CDS1100179 783 - 0.701149
NA RSP_2363 Short-chain dehydrogenase/reductaseSubName: Full=Short-chain dehydrogenase/reductase; chromosome 1 CDS990482 765 + 0.711111
NA RSP_2724 Probable Methylase involved in ubiquinone/menaquinone biosynthesisSubName: Full=Putative Methylase involved in ubiquinone/menaquinone biosynthesis; chromosome 1 CDS1374928 720 + 0.736111
NA RSP_2321 Putative TRAP-T family transporter, DctM (12TMs) subunitSubName: Full=Putative TRAP-T family transporter, DctM (12TMs) subunit; chromosome 1 CDS944312 1326 - 0.661388
NA RSP_1993 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS590153 477 - 0.691824
NA RSP_2809 ABC transporter, inner membrane subunit chromosome 1 CDS1505485 1101 - 0.677566
NA RSP_2322 TRAP-T family transporter, DctQ (4TMs) subunitSubName: Full=TRAP-T family transporter, DctQ (4TMs) subunit; chromosome 1 CDS945637 507 - 0.621302
NA RSP_0684 Possible oxidoreductase; Short-chain dehydrogenase/reductase SDRSubName: Full=Putative oxidoreductase Short-chain dehydrogenase/reductase SDR; EC=1.1.1.159; chromosome 1 CDS2427604 810 - 0.676543
NA RSP_2202 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS816157 492 + 0.752033
NA RSP_0194 possible ABC transporter, substrate-binding proteinSubName: Full=Putative ABC transporter, substrate-binding protein; chromosome 1 CDS1910241 471 - 0.66879
NA RSP_2411 hypothetical protein chromosome 1 CDS1040755 801 - 0.707865
NA RSP_1694 Probable short-chain dehydrogenase/reductaseSubName: Full=Putative short-chain dehydrogenase/reductase; chromosome 1 CDS282869 816 - 0.705882
NA RSP_1369 Short-chain dehydrogenase/reductase SDRSubName: Full=Short-chain dehydrogenase/reductase SDR; chromosome 1 CDS3146893 783 + 0.693487
NA RSP_0230 Neutral zinc metallopeptidaseSubName: Full=Neutral zinc metallopeptidase; EC=3.4.24.40; chromosome 1 CDS1948474 1596 - 0.678571
NA RSP_1534 putative acyl carrier proteinSubName: Full=Putative acyl carrier protein; chromosome 1 CDS122749 246 - 0.617886
NA RSP_1196 SAM-dependent methyltransferaseSubName: Full=SAM-dependent methyltransferase; chromosome 1 CDS2967095 813 + 0.728167
NA RSP_2453 putative oxidoreductase (NAD/NADP dependent)SubName: Full=Putative oxidoreductase (NAD/NADP dependent); chromosome 1 CDS1094553 666 - 0.711712
NA RSP_1114 Hemolysin-type calcium-binding toxinSubName: Full=Hemolysin-type calcium-binding toxin; chromosome 1 CDS2872932 843 + 0.689205
NA RSP_1916 possible 2-hydroxychromene-2-carboxylate isomeraseSubName: Full=Putative 2-hydroxychromene-2-carboxylate isomerase; chromosome 1 CDS514570 600 - 0.68
NA RSP_1075 Short-chain dehydrogenase/reductase SDR chromosome 1 CDS2831175 801 - 0.716604
NA RSP_2810 ABC transporter, ATPase subunitSubName: Full=ABC transporter, ATPase subunit; chromosome 1 CDS1504712 774 - 0.671835
NA RSP_2777 3-oxoacyl-(acyl-carrier-protein) synthaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) synthase; EC=2.3.1.179; chromosome 1 CDS1424454 1209 + 0.680728
NA RSP_0634 TRAP-T family transporter, DctM (12 TMs) subunitSubName: Full=TRAP-T family transporter, DctM (12 TMs) subunit; chromosome 1 CDS2371214 1308 - 0.668196
NA RSP_0339 hypothetical proteinSubName: Full=Methyltransferase family protein; chromosome 1 CDS2069349 570 - 0.698246
NA RSP_6094 TRAP-T family sorbitol/mannitol transporter, DctM (12TMs) subunitSubName: Full=TRAP-T family sorbitol/mannitol transporter, DctM (12TMs) subunit; chromosome 1 CDS1809282 2049 - 0.697413
NA RSP_2320 TRAP-T family transporter, periplasmic binding proteinSubName: Full=TRAP-T family transporter, periplasmic binding protein; chromosome 1 CDS943218 1038 - 0.643545
NA RSP_1535 conserved hypothetical proteinSubName: Full=Subfamily IIIC HAD-superfamily phosphatase; chromosome 1 CDS123055 1914 - 0.711599
NA RSP_1946 Cytochrome P450 hydroxylaseSubName: Full=Cytochrome P450 hydroxylase; EC=1.14.14.1; chromosome 1 CDS543683 1182 - 0.713198
NA RSP_2295 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS918041 789 + 0.702155
NA RSP_1599 AMP-binding proteinSubName: Full=AMP-binding protein; chromosome 1 CDS196087 1650 - 0.669091
NA RSP_0635 TRAP-T family transporter, DctQ (4 TMs) subunitSubName: Full=TRAP-T family transporter, DctQ (4 TMs) subunit; chromosome 1 CDS2372531 519 - 0.606936
NA RSP_1113 Hemolysin-type calcium-binding region; RTX toxinSubName: Full=Hemolysin-type calcium-binding region RTX toxin; chromosome 1 CDS2871399 1314 - 0.703957
NA RSP_0481 possible 2-deoxy-D-gluconate 3-dehydrogenaseSubName: Full=Putative 2-deoxy-D-gluconate 3-dehydrogenase; EC=1.1.1.125; chromosome 1 CDS2216678 726 - 0.702479
NA RSP_1137 Histone deacetylase family proteinSubName: Full=Histone deacetylase family protein; chromosome 1 CDS2899846 924 - 0.718615
NA RSP_0801 deacetylase / probable acetylpolyamine aminohydrolaseSubName: Full=Deacetylase / putative acetylpolyamine aminohydrolase; chromosome 1 CDS2544668 1140 + 0.72807
NA RSP_2371 3-oxoacyl-(acyl-carrier protein) reductase / Short-chain dehydrogenase/reductase SDRSubName: Full=3-oxoacyl-(Acyl-carrier protein) reductase / Short-chain dehydrogenase/reductase SDR; EC=1.1.1.100; chromosome 1 CDS997596 747 + 0.702811
PmtA RSP_0721 Phosphatidylethanolamine N-methyltransferaseSubName: Full=Phosphatidylethanolamine N-methyltransferase; EC=2.1.1.17; chromosome 1 CDS2466178 615 + 0.694309
acoR RSP_2800 Putative AcoR, Transcriptional activator of acetoin/glycerol metabolismSubName: Full=Putative AcoR, Transcriptional activator of acetoin/glycerol metabolism; chromosome 1 CDS1520106 1938 + 0.724458
acpP RSP_2463 Acyl carrier protein (ACP)RecName: Full=Acyl carrier protein; Short=ACP; chromosome 1 CDS1103152 234 + 0.602564
acpP RSP_2776 Acyl carrier protein, AcpPSubName: Full=Acyl carrier protein, AcpP; chromosome 1 CDS1424176 267 + 0.629214
acuC1 RSP_2390 putative Acetoin utilization protein chromosome 1 CDS1018710 1110 + 0.744144
btaB RSP_0857 S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferaseSubName: Full=S-adenosylmethionine-diacylgycerolhomoserine-N-methyltransferase; chromosome 1 CDS2607152 633 + 0.737757
cerI RSP_0123 Autoinducer synthesis proteinRecName: Full=Acyl-homoserine-lactone synthase; EC=2.3.1.184; AltName: Full=Autoinducer synthesis protein; chromosome 1 CDS1837350 633 + 0.63981
crtD RSP_0266 Methoxyneurosporene dehydrogenaseRecName: Full=Hydroxyneurosporene desaturase; Short=HND; AltName: Full=1-hydroxycarotenoid 3,4-dehydrogenase; AltName: Full=1-hydroxycarotenoid 3,4-desaturase; EC=1.3.99.27; chromosome 1 CDS1990681 1488 + 0.730511
crtF RSP_0264 Hydroxyneurosporene methyltransferaseRecName: Full=Demethylspheroidene O-methyltransferase; EC=2.1.1.210; AltName: Full=Hydroxyneurosporene methyltransferase; chromosome 1 CDS1988478 1140 - 0.715789
crtI RSP_0271 Phytoene dehydrogenaseRecName: Full=Phytoene desaturase (neurosporene-forming); EC=1.3.99.28; AltName: Full=3-step phytoene desaturase; AltName: Full=Phytoene dehydrogenase; chromosome 1 CDS1994806 1557 - 0.672447
cypC RSP_2378 putative fatty acid beta hydroxylase (cytochrome P450)SubName: Full=Putative fatty acid beta hydroxylase (Cytochrome P450); chromosome 1 CDS1005921 1323 - 0.702192
fabF RSP_2464 Beta-ketoacyl synthase; 3-oxoacyl-(acyl carrier protein) synthase IIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; chromosome 1 CDS1103882 1263 + 0.692003
fabG RSP_2461 3-oxoacyl-(acyl-carrier protein) reductaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase; EC=1.1.1.100; chromosome 1 CDS1102236 738 + 0.692412
fabG RSP_2538 Short-chain dehydrogenase/reductaseSubName: Full=Short-chain dehydrogenase/reductase; EC=1.1.1.100; chromosome 1 CDS1182066 780 + 0.716667
fixR RSP_1067 Short-chain alcohol dehydrogenase chromosome 1 CDS2824593 777 - 0.676963
fixU RSP_0543 hypothetical proteinSubName: Full=Putative nitrogen fixation protein FixT; chromosome 1 CDS2280582 216 - 0.666667
fliH RSP_1311 putative flagellar biosynthesis/type III secretory pathway proteinSubName: Full=Putative flagellar biosynthesis/type III secretory pathway protein; chromosome 1 CDS3084425 591 - 0.693739
gno RSP_2160 Short-chain dehydrogenase/reductaseSubName: Full=Short-chain dehydrogenase/reductase; EC=1.1.1.69; chromosome 1 CDS764032 765 - 0.71634
hutI RSP_2934 Imidazolone-5-propionate hydrolaseRecName: Full=Imidazolonepropionase; EC=3.5.2.7; AltName: Full=Imidazolone-5-propionate hydrolase; chromosome 1 CDS1612029 1188 + 0.719697
linC RSP_2039 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (2,5-DDOL dehydrogenase)SubName: Full=Short chain dehydrogenase; chromosome 1 CDS634626 753 + 0.636122
pncA RSP_1368 probable pyrazinamidase/nicotinamidaseSubName: Full=Putative pyrazinamidase/nicotinamidase; EC=3.5.1.-; EC=3.5.1.19; chromosome 1 CDS3146095 606 - 0.69967
smoM RSP_0097 TRAP-T family sorbitol/mannitol transporter, periplasmic binding protein, SmoMRecName: Full=Alpha-keto acid-binding periplasmic protein TakP; AltName: Full=Extracytoplasmic solute receptor protein TakP; AltName: Full=TRAP transporter alpha-keto acid-binding subunit P; AltName: Full=TRAP-T family sorbitol/mannitol transporter, periplasmic binding protein, SmoM; Flags: Precursor; chromosome 1 CDS1808034 1098 + 0.649363
smoS RSP_0095 Sorbitol dehydrogenaseSubName: Full=Sorbitol dehydrogenase; EC=1.1.1.14; EC=1.1.99.21; chromosome 1 CDS1805274 771 + 0.696498
ucpA RSP_0174 short-chain dehydrogenaseSubName: Full=Short-chain dehydrogenase; chromosome 1 CDS1890252 741 - 0.711201
ucpA RSP_2029 Short-chain dehydrogenase/reductaseSubName: Full=Short chain dehydrogenase; chromosome 1 CDS627382 780 + 0.734615