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2024-06-17 04:41:41

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome 1

Number of genes found: 115

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Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA RSP_6050 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS1012902 825 - 0.726061
NA RSP_0675 putative TatD-related deoxyribonucleaseSubName: Full=Putative TatD-related deoxyribonuclease; EC=3.1.21.-; chromosome 1 CDS2416607 798 + 0.704261
NA RSP_2727 probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylaseSubName: Full=Putative 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; EC=3.2.2.21; chromosome 1 CDS1377774 630 + 0.736508
NA RSP_1968 Possible integrase/recombinaseSubName: Full=Putative integrase/recombinase; chromosome 1 CDS559600 891 + 0.672278
NA RSP_1466 Putative mutY, A/G-specific adenine glycosylaseSubName: Full=A/G-specific DNA-adenine glycosylase; EC=3.2.2.-; chromosome 1 CDS51659 1104 + 0.73913
NA RSP_1400 UMUC-like DNA-repair protein chromosome 1 CDS3177849 1350 - 0.713333
NA RSP_1028 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome 1 CDS2790472 2814 + 0.677328
NA RSP_1814 conserved hypothetical proteinRecName: Full=UPF0102 protein RHOS4_03930; chromosome 1 CDS402740 354 + 0.711864
NA RSP_1981 Deoxyribodipyrimidine photolyase chromosome 1 CDS573941 1365 - 0.753846
NA RSP_0708 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; EC=3.6.1.22; chromosome 1 CDS2452809 954 - 0.727463
NA RSP_2092 Putative uvrD/DNA Helicase IISubName: Full=ATP-dependent DNA helicase, Rep family; EC=3.6.4.12; chromosome 1 CDS688026 2352 + 0.67602
NA RSP_2185 nuclease (SNase-like) chromosome 1 CDS791845 681 + 0.737151
NA RSP_1468 Site-specific DNA-methyltransferaseSubName: Full=Site-specific DNA-methyltransferase; EC=2.1.1.72; chromosome 1 CDS54227 1119 - 0.660411
NA RSP_2679 ATP-dependent DNA ligaseSubName: Full=ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module; EC=6.5.1.1; chromosome 1 CDS1323185 2607 - 0.711546
NA RSP_0604 conserved hypothetical protein chromosome 1 CDS2344845 1371 - 0.677608
NA RSP_2361 putative integrase/resolvase recombinase protein phage-related integraseSubName: Full=Putative integrase/resolvase recombinase protein phage-related integrase; chromosome 1 CDS987339 1818 - 0.625963
NA RSP_1627 Putative N-6 adenine-specific DNA methylaseSubName: Full=Putative N-6 adenine-specific DNA methylase; EC=2.1.1.72; chromosome 1 CDS223468 807 - 0.681537
NA RSP_1966 possible ISSod13, transposase chromosome 1 CDS558661 876 - 0.634703
NA RSP_0405 probable single-stranded DNA-specific exonucleaseSubName: Full=Putative single-stranded DNA-specific exonuclease; EC=3.1.-.-; chromosome 1 CDS2137250 1752 + 0.750571
NA RSP_2684 putative endonuclease involved in recombinationRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome 1 CDS1329031 483 - 0.708075
NA RSP_0621 Possible DNA helicaseSubName: Full=Putative DNA helicase; EC=3.6.4.12; chromosome 1 CDS2356523 5148 + 0.680847
NA RSP_1032 possible O6-methylguanine-DNA methyltransferaseSubName: Full=Putative O6-methylguanine-DNA methyltransferase; EC=2.1.1.63; chromosome 1 CDS2796013 849 + 0.730271
NA RSP_2353 conserved hypothetical proteinSubName: Full=Phage terminase, small subunit, putative, P27 family; chromosome 1 CDS979786 396 - 0.719697
NA RSP_1339 Formamidopyrimidine-DNA glycolaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome 1 CDS3108159 852 + 0.70892
NA RSP_1696 DNA topoisomerase IV, A subunitRecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome 1 CDS284679 2304 + 0.687066
NA RSP_2232 putative uracil-DNA glycosylase chromosome 1 CDS849420 1425 - 0.72
NA RSP_1662 Integrase/recombinase chromosome 1 CDS254119 1047 + 0.685769
NA RSP_2040 possible Transposase fragment chromosome 1 CDS635422 198 + 0.651515
NA RSP_2865 putative transposaseSubName: Full=Putative transposase; chromosome 1 CDS1435363 1380 - 0.681159
NA RSP_1485 ATP-dependent RNA helicase chromosome 1 CDS70529 1809 - 0.726921
NA RSP_1346 DNA gyrase, subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome 1 CDS3115048 2436 + 0.673235
NA RSP_1743 ATPase, AAA familySubName: Full=Recombination protein MgsA; chromosome 1 CDS324610 1314 + 0.69102
NA RSP_0136 putative integrase for prophage CP-933U chromosome 1 CDS1851235 834 + 0.671463
NA RSP_1343 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome 1 CDS3112260 1119 + 0.663986
NA RSP_1527 Helicase, UvrD/Rep familySubName: Full=DNA helicase/exodeoxyribonuclease V, subunit A; EC=3.1.11.5; chromosome 1 CDS114434 3321 + 0.728696
NA RSP_2123 Radical SAM domain proteinSubName: Full=Radical SAM domain protein; chromosome 1 CDS723994 1089 + 0.728191
NA RSP_2381 putative 3-methyladenine DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome 1 CDS1010544 555 + 0.722522
NA RSP_2013 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; EC=3.6.4.13; chromosome 1 CDS613899 2427 - 0.756902
NA RSP_6230 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS2812006 501 - 0.696607
NA RSP_2388 conserved hypothetical proteinSubName: Full=NTP pyrophosphohydrolase; chromosome 1 CDS1017366 501 - 0.698603
NA RSP_1206 putative phosphohydrolase (mutT/nudix family protein)SubName: Full=Putative phosphohydrolase (MutT/nudix family protein); chromosome 1 CDS2977634 588 - 0.719388
NA RSP_2497 ATPase chromosome 1 CDS1141281 654 - 0.643731
NA RSP_0419 conserved hypothetical proteinSubName: Full=NTP pyrophosphohydrolase; chromosome 1 CDS2152500 678 + 0.731563
NA RSP_0838 putative DNA polymerase III, delta subunit / DNA bindingSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome 1 CDS2586898 993 - 0.718026
NA RSP_1458 Putative DNA repair enzymeSubName: Full=Putative DNA repair enzyme; chromosome 1 CDS43365 1605 - 0.747041
NA RSP_0674 Putative HolB DNA polymerase III delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome 1 CDS2415483 1113 + 0.743935
NA RSP_1031 Endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome 1 CDS2795256 645 - 0.666667
NA RSP_6018 hypothetical proteinSubName: Full=DNA gyrase inhibitor; chromosome 1 CDS355790 471 - 0.675159
NA RSP_0003 putative site-specific recombinase chromosome 1 CDS1704748 1530 - 0.512418
NA RSP_0959 ATPase chromosome 1 CDS2715617 1701 - 0.707231
NA RSP_1208 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; EC=3.6.1.-; chromosome 1 CDS2979276 438 + 0.69863
NA RSP_0780 hypothetical protein with ATP/GTP-binding siteSubName: Full=ATPase involved in DNA replication initiation; chromosome 1 CDS2523636 681 + 0.735683
NA RSP_0563 putative site-specific recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome 1 CDS2300496 921 + 0.743757
NA RSP_0567 Probable Methylated-DNA-(protein)-cysteine S-methyltransferaseSubName: Full=Putative Methylated-DNA-(Protein)-cysteine S-methyltransferase; EC=2.1.1.63; chromosome 1 CDS2303964 444 - 0.738739
NA RSP_2898 putative DNA polymerase III chi subunitSubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; chromosome 1 CDS1573457 459 - 0.732026
NA RSP_0730 conserved hypothetical proteinSubName: Full=TIGR02302 family protein; chromosome 1 CDS2473891 2505 + 0.724551
NA RSP_0572 putative exonucleaseSubName: Full=Putative exonuclease; EC=2.7.7.7; chromosome 1 CDS2311564 2088 - 0.724138
NA RSP_0744 DNA-3-methyladenine glycosylase ISubName: Full=DNA-3-methyladenine glycosylase I; EC=3.2.2.20; chromosome 1 CDS2488629 588 - 0.688776
NA RSP_2177 hypothetical proteinSubName: Full=DNA protecting protein DprA; chromosome 1 CDS781012 1119 + 0.762288
NA RSP_0901 N-6 Adenine-specific DNA methylaseSubName: Full=N-6 Adenine-specific DNA methylase; chromosome 1 CDS2651080 555 + 0.731532
NA RSP_1001 hypothetical proteinSubName: Full=Uracil-DNA glycosylase, family 4; EC=2.7.7.7; chromosome 1 CDS2759368 783 - 0.738186
NA RSP_1678 putative RecO proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome 1 CDS267436 720 + 0.733333
NA RSP_0946 putative DNA topoisomerase I proteinSubName: Full=Putative DNA topoisomerase I protein; EC=5.99.1.2; chromosome 1 CDS2698229 1035 + 0.713043
NA RSP_1793 Single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome 1 CDS379339 522 - 0.699234
NA RSP_2749 putative P4-family integraseSubName: Full=Putative P4-family integrase; chromosome 1 CDS1399432 1320 + 0.715151
NA RSP_2143 DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) chromosome 1 CDS744522 1416 + 0.721751
NA RSP_1525 putative Helicase/ExonucleaseSubName: Full=Putative Helicase/Exonuclease; chromosome 1 CDS111412 2994 + 0.748163
NA RSP_2080 Putative Tyrosine recombinaseSubName: Full=Putative Tyrosine recombinase; chromosome 1 CDS674362 1026 + 0.688109
NA RSP_1651 hypothetical proteinSubName: Full=Phage terminase, small subunit; chromosome 1 CDS245668 438 - 0.694064
NA RSP_1388 DNA-binding protein HU, form NSubName: Full=DNA-binding protein HU, form N; chromosome 1 CDS3166447 288 + 0.670139
NA RSP_2052 N6 adenine-specific DNA methyltransferase, D12 classSubName: Full=N6 adenine-specific DNA methyltransferase, D12 class; EC=2.1.1.72; chromosome 1 CDS646227 807 - 0.682776
DnaE RSP_1123 DNA polymerase III, alpha subunit chromosome 1 CDS2885063 2823 - 0.676585
dnaA RSP_1342 chromosomal replication initiator protein, DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome 1 CDS3110775 1368 + 0.66155
dnaB RSP_1928 Replicative DNA helicase, DnaBSubName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome 1 CDS525735 1491 - 0.678739
dnaG RSP_0397 DNA primase (DnaG)RecName: Full=DNA primase; EC=2.7.7.-; chromosome 1 CDS2127147 1932 - 0.710145
dnaQ RSP_1236 putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleasesSubName: Full=Putative DNA polymerase III, epsilon subunit-related 3-5 exonuclease; EC=2.7.7.7; chromosome 1 CDS3007281 690 + 0.695652
dnaX RSP_0710 DNA polymerase III tau and gamma subunitsSubName: Full=DNA polymerase III subunits gamma and tau; EC=2.7.7.7; chromosome 1 CDS2456212 1749 + 0.70669
gyrA RSP_2630 DNA gyrase/topoisomerase IV, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome 1 CDS1268272 2724 - 0.672173
ialA RSP_0931 NUDIX hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome 1 CDS2680710 489 - 0.674847
ihfA RSP_2611 Histone-like DNA-binding protein (IHF)RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome 1 CDS1252322 303 - 0.653465
int RSP_0217 possible phage-related integraseSubName: Full=Putative phage-related integrase; chromosome 1 CDS1930262 1242 - 0.688406
lig2 RSP_2413 putative ATP-dependent DNA LigaseSubName: Full=DNA ligase; EC=6.5.1.1; chromosome 1 CDS1043632 1602 - 0.703496
ligA RSP_2622 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome 1 CDS1260334 2115 + 0.703546
mfd RSP_2850 transcription-repair coupling factor (helicase)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome 1 CDS1453666 3498 - 0.683533
mgpS RSP_2422 putative ATP-dependent helicase, MgpS chromosome 1 CDS1052447 2793 + 0.699606
mutL RSP_1095 DNA mismatch repair protein chromosome 1 CDS2852002 1899 - 0.726698
mutS RSP_1218 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome 1 CDS2989762 2628 + 0.708904
mutT RSP_1166 NTP pyrophosphohydrolaseSubName: Full=NTP pyrophosphohydrolase; EC=3.6.1.-; chromosome 1 CDS2930353 399 - 0.689223
parE RSP_0772 DNA topoisomerase II/DNA gyrase, subunit B chromosome 1 CDS2511924 1992 + 0.663655
priA RSP_0560 Probable pimosomal protein N'SubName: Full=Replication restart DNA helicase PriA; EC=3.6.4.-; chromosome 1 CDS2296841 2193 - 0.737346
radC RSP_1171 DNA repair proteinSubName: Full=DNA repair protein; chromosome 1 CDS2937519 765 - 0.679739
recA RSP_0452 Recombinase A, DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome 1 CDS2184461 1074 - 0.636872
recF RSP_1344 RecF protein chromosome 1 CDS3113431 1107 + 0.711834
recG RSP_2623N Haem peroxidaseSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome 1 CDS1262445 2088 + 0.722222
recN RSP_2118 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome 1 CDS718756 1641 + 0.738574
recQ RSP_1359 DEAD/DEAH box helicaseSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome 1 CDS3137121 2046 - 0.717986
recR RSP_0712 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome 1 CDS2458319 600 + 0.718333
rhlE RSP_2536 ATP-dependent helicase, DEAD-boxSubName: Full=ATP-dependent helicase, DEAD-box; EC=3.6.4.13; chromosome 1 CDS1178520 1557 - 0.691073
rhlE2 RSP_0819 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; EC=3.6.4.13; chromosome 1 CDS2564430 1386 + 0.708514
rnhA RSP_0867 ribonuclease H chromosome 1 CDS2617237 528 + 0.689394
rnhB RSP_1470 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome 1 CDS55434 639 - 0.665102
ruvA RSP_0555 Holliday junction DNA helicase ruvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome 1 CDS2292945 675 - 0.721482
ruvB RSP_0553 Holiday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome 1 CDS2290834 1026 - 0.712476
ruvC RSP_0556 Holliday junction nuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome 1 CDS2293616 507 - 0.680473
topA RSP_2178 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome 1 CDS782378 2655 + 0.682109
trgB RSP_2146 Tellurite resistance protein chromosome 1 CDS747648 1086 + 0.742173
uvrA RSP_2966 ABC excinuclease subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome 1 CDS1648123 2859 - 0.667366
uvrB RSP_2083 Putative Excinuclease subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome 1 CDS676895 2184 + 0.666209
uvrC RSP_1074 Excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome 1 CDS2829001 1872 - 0.678953
xerD RSP_2815 Probable integrase/recombinase XerD chromosome 1 CDS1497308 936 + 0.705128
xseA RSP_1845 Exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome 1 CDS435848 1560 - 0.744231
xseB RSP_1136 exonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome 1 CDS2899610 240 - 0.658333
xthA RSP_2657 Exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome 1 CDS1299328 780 - 0.685897
xthA1 RSP_0848 Exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome 1 CDS2598593 789 + 0.662864
ydjG RSP_2260 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS877250 1098 - 0.724954