Gene list
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COG category: Replication, recombination and repair
Genomic element: chromosome 1
Number of genes found: 115
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Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | RSP_0730 | conserved hypothetical protein | SubName: Full=TIGR02302 family protein; | chromosome 1 | CDS | 2473891 | 2505 | + | 0.724551 |
NA | RSP_0901 | N-6 Adenine-specific DNA methylase | SubName: Full=N-6 Adenine-specific DNA methylase; | chromosome 1 | CDS | 2651080 | 555 | + | 0.731532 |
NA | RSP_6230 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 2812006 | 501 | - | 0.696607 |
NA | RSP_2080 | Putative Tyrosine recombinase | SubName: Full=Putative Tyrosine recombinase; | chromosome 1 | CDS | 674362 | 1026 | + | 0.688109 |
NA | RSP_1627 | Putative N-6 adenine-specific DNA methylase | SubName: Full=Putative N-6 adenine-specific DNA methylase; EC=2.1.1.72; | chromosome 1 | CDS | 223468 | 807 | - | 0.681537 |
NA | RSP_2727 | probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | SubName: Full=Putative 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; EC=3.2.2.21; | chromosome 1 | CDS | 1377774 | 630 | + | 0.736508 |
NA | RSP_1743 | ATPase, AAA family | SubName: Full=Recombination protein MgsA; | chromosome 1 | CDS | 324610 | 1314 | + | 0.69102 |
NA | RSP_0572 | putative exonuclease | SubName: Full=Putative exonuclease; EC=2.7.7.7; | chromosome 1 | CDS | 2311564 | 2088 | - | 0.724138 |
NA | RSP_2353 | conserved hypothetical protein | SubName: Full=Phage terminase, small subunit, putative, P27 family; | chromosome 1 | CDS | 979786 | 396 | - | 0.719697 |
NA | RSP_0003 | putative site-specific recombinase | chromosome 1 | CDS | 1704748 | 1530 | - | 0.512418 | |
NA | RSP_1032 | possible O6-methylguanine-DNA methyltransferase | SubName: Full=Putative O6-methylguanine-DNA methyltransferase; EC=2.1.1.63; | chromosome 1 | CDS | 2796013 | 849 | + | 0.730271 |
NA | RSP_2749 | putative P4-family integrase | SubName: Full=Putative P4-family integrase; | chromosome 1 | CDS | 1399432 | 1320 | + | 0.715151 |
NA | RSP_6018 | hypothetical protein | SubName: Full=DNA gyrase inhibitor; | chromosome 1 | CDS | 355790 | 471 | - | 0.675159 |
NA | RSP_0604 | conserved hypothetical protein | chromosome 1 | CDS | 2344845 | 1371 | - | 0.677608 | |
NA | RSP_1458 | Putative DNA repair enzyme | SubName: Full=Putative DNA repair enzyme; | chromosome 1 | CDS | 43365 | 1605 | - | 0.747041 |
NA | RSP_1527 | Helicase, UvrD/Rep family | SubName: Full=DNA helicase/exodeoxyribonuclease V, subunit A; EC=3.1.11.5; | chromosome 1 | CDS | 114434 | 3321 | + | 0.728696 |
NA | RSP_1346 | DNA gyrase, subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome 1 | CDS | 3115048 | 2436 | + | 0.673235 |
NA | RSP_2388 | conserved hypothetical protein | SubName: Full=NTP pyrophosphohydrolase; | chromosome 1 | CDS | 1017366 | 501 | - | 0.698603 |
NA | RSP_6050 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1012902 | 825 | - | 0.726061 |
NA | RSP_0405 | probable single-stranded DNA-specific exonuclease | SubName: Full=Putative single-stranded DNA-specific exonuclease; EC=3.1.-.-; | chromosome 1 | CDS | 2137250 | 1752 | + | 0.750571 |
NA | RSP_2898 | putative DNA polymerase III chi subunit | SubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; | chromosome 1 | CDS | 1573457 | 459 | - | 0.732026 |
NA | RSP_1485 | ATP-dependent RNA helicase | chromosome 1 | CDS | 70529 | 1809 | - | 0.726921 | |
NA | RSP_2381 | putative 3-methyladenine DNA glycosylase | RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; | chromosome 1 | CDS | 1010544 | 555 | + | 0.722522 |
NA | RSP_2123 | Radical SAM domain protein | SubName: Full=Radical SAM domain protein; | chromosome 1 | CDS | 723994 | 1089 | + | 0.728191 |
NA | RSP_0675 | putative TatD-related deoxyribonuclease | SubName: Full=Putative TatD-related deoxyribonuclease; EC=3.1.21.-; | chromosome 1 | CDS | 2416607 | 798 | + | 0.704261 |
NA | RSP_1031 | Endonuclease III | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome 1 | CDS | 2795256 | 645 | - | 0.666667 |
NA | RSP_0563 | putative site-specific recombinase | RecName: Full=Tyrosine recombinase XerC; | chromosome 1 | CDS | 2300496 | 921 | + | 0.743757 |
NA | RSP_2052 | N6 adenine-specific DNA methyltransferase, D12 class | SubName: Full=N6 adenine-specific DNA methyltransferase, D12 class; EC=2.1.1.72; | chromosome 1 | CDS | 646227 | 807 | - | 0.682776 |
NA | RSP_0780 | hypothetical protein with ATP/GTP-binding site | SubName: Full=ATPase involved in DNA replication initiation; | chromosome 1 | CDS | 2523636 | 681 | + | 0.735683 |
NA | RSP_0708 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; EC=3.6.1.22; | chromosome 1 | CDS | 2452809 | 954 | - | 0.727463 |
NA | RSP_1968 | Possible integrase/recombinase | SubName: Full=Putative integrase/recombinase; | chromosome 1 | CDS | 559600 | 891 | + | 0.672278 |
NA | RSP_2497 | ATPase | chromosome 1 | CDS | 1141281 | 654 | - | 0.643731 | |
NA | RSP_1793 | Single-strand DNA binding protein | RecName: Full=Single-stranded DNA-binding protein; Short=SSB; | chromosome 1 | CDS | 379339 | 522 | - | 0.699234 |
NA | RSP_1339 | Formamidopyrimidine-DNA glycolase | RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; | chromosome 1 | CDS | 3108159 | 852 | + | 0.70892 |
NA | RSP_0621 | Possible DNA helicase | SubName: Full=Putative DNA helicase; EC=3.6.4.12; | chromosome 1 | CDS | 2356523 | 5148 | + | 0.680847 |
NA | RSP_0419 | conserved hypothetical protein | SubName: Full=NTP pyrophosphohydrolase; | chromosome 1 | CDS | 2152500 | 678 | + | 0.731563 |
NA | RSP_2684 | putative endonuclease involved in recombination | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome 1 | CDS | 1329031 | 483 | - | 0.708075 |
NA | RSP_2361 | putative integrase/resolvase recombinase protein phage-related integrase | SubName: Full=Putative integrase/resolvase recombinase protein phage-related integrase; | chromosome 1 | CDS | 987339 | 1818 | - | 0.625963 |
NA | RSP_1468 | Site-specific DNA-methyltransferase | SubName: Full=Site-specific DNA-methyltransferase; EC=2.1.1.72; | chromosome 1 | CDS | 54227 | 1119 | - | 0.660411 |
NA | RSP_0567 | Probable Methylated-DNA-(protein)-cysteine S-methyltransferase | SubName: Full=Putative Methylated-DNA-(Protein)-cysteine S-methyltransferase; EC=2.1.1.63; | chromosome 1 | CDS | 2303964 | 444 | - | 0.738739 |
NA | RSP_1466 | Putative mutY, A/G-specific adenine glycosylase | SubName: Full=A/G-specific DNA-adenine glycosylase; EC=3.2.2.-; | chromosome 1 | CDS | 51659 | 1104 | + | 0.73913 |
NA | RSP_2177 | hypothetical protein | SubName: Full=DNA protecting protein DprA; | chromosome 1 | CDS | 781012 | 1119 | + | 0.762288 |
NA | RSP_2092 | Putative uvrD/DNA Helicase II | SubName: Full=ATP-dependent DNA helicase, Rep family; EC=3.6.4.12; | chromosome 1 | CDS | 688026 | 2352 | + | 0.67602 |
NA | RSP_0674 | Putative HolB DNA polymerase III delta prime subunit | SubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; | chromosome 1 | CDS | 2415483 | 1113 | + | 0.743935 |
NA | RSP_1966 | possible ISSod13, transposase | chromosome 1 | CDS | 558661 | 876 | - | 0.634703 | |
NA | RSP_0946 | putative DNA topoisomerase I protein | SubName: Full=Putative DNA topoisomerase I protein; EC=5.99.1.2; | chromosome 1 | CDS | 2698229 | 1035 | + | 0.713043 |
NA | RSP_1001 | hypothetical protein | SubName: Full=Uracil-DNA glycosylase, family 4; EC=2.7.7.7; | chromosome 1 | CDS | 2759368 | 783 | - | 0.738186 |
NA | RSP_1678 | putative RecO protein | RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; | chromosome 1 | CDS | 267436 | 720 | + | 0.733333 |
NA | RSP_1525 | putative Helicase/Exonuclease | SubName: Full=Putative Helicase/Exonuclease; | chromosome 1 | CDS | 111412 | 2994 | + | 0.748163 |
NA | RSP_1343 | DNA polymerase III, beta chain | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome 1 | CDS | 3112260 | 1119 | + | 0.663986 |
NA | RSP_2232 | putative uracil-DNA glycosylase | chromosome 1 | CDS | 849420 | 1425 | - | 0.72 | |
NA | RSP_1208 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; EC=3.6.1.-; | chromosome 1 | CDS | 2979276 | 438 | + | 0.69863 |
NA | RSP_2185 | nuclease (SNase-like) | chromosome 1 | CDS | 791845 | 681 | + | 0.737151 | |
NA | RSP_2143 | DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) | chromosome 1 | CDS | 744522 | 1416 | + | 0.721751 | |
NA | RSP_0838 | putative DNA polymerase III, delta subunit / DNA binding | SubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; | chromosome 1 | CDS | 2586898 | 993 | - | 0.718026 |
NA | RSP_0136 | putative integrase for prophage CP-933U | chromosome 1 | CDS | 1851235 | 834 | + | 0.671463 | |
NA | RSP_1981 | Deoxyribodipyrimidine photolyase | chromosome 1 | CDS | 573941 | 1365 | - | 0.753846 | |
NA | RSP_1662 | Integrase/recombinase | chromosome 1 | CDS | 254119 | 1047 | + | 0.685769 | |
NA | RSP_1388 | DNA-binding protein HU, form N | SubName: Full=DNA-binding protein HU, form N; | chromosome 1 | CDS | 3166447 | 288 | + | 0.670139 |
NA | RSP_1814 | conserved hypothetical protein | RecName: Full=UPF0102 protein RHOS4_03930; | chromosome 1 | CDS | 402740 | 354 | + | 0.711864 |
NA | RSP_0959 | ATPase | chromosome 1 | CDS | 2715617 | 1701 | - | 0.707231 | |
NA | RSP_2040 | possible Transposase fragment | chromosome 1 | CDS | 635422 | 198 | + | 0.651515 | |
NA | RSP_0744 | DNA-3-methyladenine glycosylase I | SubName: Full=DNA-3-methyladenine glycosylase I; EC=3.2.2.20; | chromosome 1 | CDS | 2488629 | 588 | - | 0.688776 |
NA | RSP_1028 | DNA polymerase I | SubName: Full=DNA polymerase I; EC=2.7.7.7; | chromosome 1 | CDS | 2790472 | 2814 | + | 0.677328 |
NA | RSP_2679 | ATP-dependent DNA ligase | SubName: Full=ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module; EC=6.5.1.1; | chromosome 1 | CDS | 1323185 | 2607 | - | 0.711546 |
NA | RSP_1206 | putative phosphohydrolase (mutT/nudix family protein) | SubName: Full=Putative phosphohydrolase (MutT/nudix family protein); | chromosome 1 | CDS | 2977634 | 588 | - | 0.719388 |
NA | RSP_1696 | DNA topoisomerase IV, A subunit | RecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; | chromosome 1 | CDS | 284679 | 2304 | + | 0.687066 |
NA | RSP_1400 | UMUC-like DNA-repair protein | chromosome 1 | CDS | 3177849 | 1350 | - | 0.713333 | |
NA | RSP_1651 | hypothetical protein | SubName: Full=Phage terminase, small subunit; | chromosome 1 | CDS | 245668 | 438 | - | 0.694064 |
NA | RSP_2013 | DEAD/DEAH box helicase | SubName: Full=DEAD/DEAH box helicase; EC=3.6.4.13; | chromosome 1 | CDS | 613899 | 2427 | - | 0.756902 |
NA | RSP_2865 | putative transposase | SubName: Full=Putative transposase; | chromosome 1 | CDS | 1435363 | 1380 | - | 0.681159 |
DnaE | RSP_1123 | DNA polymerase III, alpha subunit | chromosome 1 | CDS | 2885063 | 2823 | - | 0.676585 | |
dnaA | RSP_1342 | chromosomal replication initiator protein, DnaA | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome 1 | CDS | 3110775 | 1368 | + | 0.66155 |
dnaB | RSP_1928 | Replicative DNA helicase, DnaB | SubName: Full=Replicative DNA helicase; EC=3.6.4.12; | chromosome 1 | CDS | 525735 | 1491 | - | 0.678739 |
dnaG | RSP_0397 | DNA primase (DnaG) | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome 1 | CDS | 2127147 | 1932 | - | 0.710145 |
dnaQ | RSP_1236 | putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases | SubName: Full=Putative DNA polymerase III, epsilon subunit-related 3-5 exonuclease; EC=2.7.7.7; | chromosome 1 | CDS | 3007281 | 690 | + | 0.695652 |
dnaX | RSP_0710 | DNA polymerase III tau and gamma subunits | SubName: Full=DNA polymerase III subunits gamma and tau; EC=2.7.7.7; | chromosome 1 | CDS | 2456212 | 1749 | + | 0.70669 |
gyrA | RSP_2630 | DNA gyrase/topoisomerase IV, subunit A | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome 1 | CDS | 1268272 | 2724 | - | 0.672173 |
ialA | RSP_0931 | NUDIX hydrolase | RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; | chromosome 1 | CDS | 2680710 | 489 | - | 0.674847 |
ihfA | RSP_2611 | Histone-like DNA-binding protein (IHF) | RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; | chromosome 1 | CDS | 1252322 | 303 | - | 0.653465 |
int | RSP_0217 | possible phage-related integrase | SubName: Full=Putative phage-related integrase; | chromosome 1 | CDS | 1930262 | 1242 | - | 0.688406 |
lig2 | RSP_2413 | putative ATP-dependent DNA Ligase | SubName: Full=DNA ligase; EC=6.5.1.1; | chromosome 1 | CDS | 1043632 | 1602 | - | 0.703496 |
ligA | RSP_2622 | DNA ligase | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome 1 | CDS | 1260334 | 2115 | + | 0.703546 |
mfd | RSP_2850 | transcription-repair coupling factor (helicase) | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome 1 | CDS | 1453666 | 3498 | - | 0.683533 |
mgpS | RSP_2422 | putative ATP-dependent helicase, MgpS | chromosome 1 | CDS | 1052447 | 2793 | + | 0.699606 | |
mutL | RSP_1095 | DNA mismatch repair protein | chromosome 1 | CDS | 2852002 | 1899 | - | 0.726698 | |
mutS | RSP_1218 | DNA mismatch repair protein MutS | RecName: Full=DNA mismatch repair protein MutS; | chromosome 1 | CDS | 2989762 | 2628 | + | 0.708904 |
mutT | RSP_1166 | NTP pyrophosphohydrolase | SubName: Full=NTP pyrophosphohydrolase; EC=3.6.1.-; | chromosome 1 | CDS | 2930353 | 399 | - | 0.689223 |
parE | RSP_0772 | DNA topoisomerase II/DNA gyrase, subunit B | chromosome 1 | CDS | 2511924 | 1992 | + | 0.663655 | |
priA | RSP_0560 | Probable pimosomal protein N' | SubName: Full=Replication restart DNA helicase PriA; EC=3.6.4.-; | chromosome 1 | CDS | 2296841 | 2193 | - | 0.737346 |
radC | RSP_1171 | DNA repair protein | SubName: Full=DNA repair protein; | chromosome 1 | CDS | 2937519 | 765 | - | 0.679739 |
recA | RSP_0452 | Recombinase A, DNA recombination protein | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome 1 | CDS | 2184461 | 1074 | - | 0.636872 |
recF | RSP_1344 | RecF protein | chromosome 1 | CDS | 3113431 | 1107 | + | 0.711834 | |
recG | RSP_2623N | Haem peroxidase | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome 1 | CDS | 1262445 | 2088 | + | 0.722222 |
recN | RSP_2118 | DNA repair protein RecN | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome 1 | CDS | 718756 | 1641 | + | 0.738574 |
recQ | RSP_1359 | DEAD/DEAH box helicase | SubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; | chromosome 1 | CDS | 3137121 | 2046 | - | 0.717986 |
recR | RSP_0712 | recombination protein RecR | RecName: Full=Recombination protein RecR; | chromosome 1 | CDS | 2458319 | 600 | + | 0.718333 |
rhlE | RSP_2536 | ATP-dependent helicase, DEAD-box | SubName: Full=ATP-dependent helicase, DEAD-box; EC=3.6.4.13; | chromosome 1 | CDS | 1178520 | 1557 | - | 0.691073 |
rhlE2 | RSP_0819 | DEAD/DEAH box helicase | SubName: Full=DEAD/DEAH box helicase; EC=3.6.4.13; | chromosome 1 | CDS | 2564430 | 1386 | + | 0.708514 |
rnhA | RSP_0867 | ribonuclease H | chromosome 1 | CDS | 2617237 | 528 | + | 0.689394 | |
rnhB | RSP_1470 | ribonuclease HII | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome 1 | CDS | 55434 | 639 | - | 0.665102 |
ruvA | RSP_0555 | Holliday junction DNA helicase ruvA | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome 1 | CDS | 2292945 | 675 | - | 0.721482 |
ruvB | RSP_0553 | Holiday junction DNA helicase RuvB | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome 1 | CDS | 2290834 | 1026 | - | 0.712476 |
ruvC | RSP_0556 | Holliday junction nuclease RuvC | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome 1 | CDS | 2293616 | 507 | - | 0.680473 |
topA | RSP_2178 | DNA topoisomerase I | RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; | chromosome 1 | CDS | 782378 | 2655 | + | 0.682109 |
trgB | RSP_2146 | Tellurite resistance protein | chromosome 1 | CDS | 747648 | 1086 | + | 0.742173 | |
uvrA | RSP_2966 | ABC excinuclease subunit A | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome 1 | CDS | 1648123 | 2859 | - | 0.667366 |
uvrB | RSP_2083 | Putative Excinuclease subunit B | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome 1 | CDS | 676895 | 2184 | + | 0.666209 |
uvrC | RSP_1074 | Excinuclease ABC, C subunit | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome 1 | CDS | 2829001 | 1872 | - | 0.678953 |
xerD | RSP_2815 | Probable integrase/recombinase XerD | chromosome 1 | CDS | 1497308 | 936 | + | 0.705128 | |
xseA | RSP_1845 | Exonuclease VII, large subunit | RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; | chromosome 1 | CDS | 435848 | 1560 | - | 0.744231 |
xseB | RSP_1136 | exonuclease VII small subunit | RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; | chromosome 1 | CDS | 2899610 | 240 | - | 0.658333 |
xthA | RSP_2657 | Exodeoxyribonuclease III | SubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; | chromosome 1 | CDS | 1299328 | 780 | - | 0.685897 |
xthA1 | RSP_0848 | Exodeoxyribonuclease III | SubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; | chromosome 1 | CDS | 2598593 | 789 | + | 0.662864 |
ydjG | RSP_2260 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 877250 | 1098 | - | 0.724954 |