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2024-06-07 10:21:32

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 120

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiomicrospira crunogena XCL-2, XCL-2
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Tcr_2009 DEAD/DEAH box helicase-likeRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS2214284 1725 + 0.45971
NA Tcr_1145 excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1240816 1842 + 0.440282
NA Tcr_0212 UvrD/REP helicaseSubName: Full=ATP-dependent DNA helicase Rep; EC=3.6.1.-; chromosome CDS251532 2034 - 0.470993
NA Tcr_0736 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS809134 741 + 0.442645
NA Tcr_0930 DNA polymerase III, epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS1006901 696 - 0.46408
NA Tcr_1807 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1983723 1731 - 0.456384
NA Tcr_2153 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS2376348 2073 + 0.478534
NA Tcr_1272 Ribonuclease HRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1387931 624 - 0.434295
NA Tcr_0950 ATP-dependent helicase HrpASubName: Full=ATP-dependent helicase HrpA; chromosome CDS1025064 4029 + 0.445768
NA Tcr_0328 Phage integraseSubName: Full=Phage integrase family protein; chromosome CDS368408 1185 + 0.405907
NA Tcr_0384 DNA topoisomerase IV, A subunitRecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS432874 2229 + 0.471063
NA Tcr_1103 Excinuclease ABC, C subunit-likeSubName: Full=Uncharacterized protein; chromosome CDS1187379 264 + 0.405303
NA Tcr_0323 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS361477 783 - 0.408685
NA Tcr_1932 conserved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; chromosome CDS2120671 618 - 0.466019
NA Tcr_2200 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; chromosome CDS2426233 324 - 0.459877
NA Tcr_1191 DNA gyrase, A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1302138 2616 + 0.453364
NA Tcr_1754 excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1914956 2037 - 0.454099
NA Tcr_0324 excinuclease ABC, A subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS362344 2808 - 0.478989
NA Tcr_0375 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS423541 1467 - 0.364008
NA Tcr_1828 Holliday junction resolvase YqgFRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2004380 405 + 0.466667
NA Tcr_1248 Phosphoesterase, RecJ-likeSubName: Full=Exonuclease RecJ; EC=3.1.-.-; chromosome CDS1362341 1794 + 0.473244
NA Tcr_1987 primosomal protein N' (replication factor Y)SubName: Full=Replication restart DNA helicase PriA; chromosome CDS2184438 2325 - 0.487742
NA Tcr_1705 HEATSubName: Full=DNA-3-methylpurine glycosylase; EC=3.2.2.-; chromosome CDS1866465 1080 + 0.442593
NA Tcr_0083 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS104412 3705 - 0.34305
NA Tcr_0894 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS973755 1023 + 0.45259
NA Tcr_0663 NAD-dependent DNA ligase (contains BRCT domain type II)-like chromosome CDS739995 891 + 0.38945
NA Tcr_0720 TatD-related deoxyribonucleaseSubName: Full=TatD-related deoxyribonuclease; chromosome CDS788826 774 + 0.444444
NA Tcr_1858 Transposase IS3/IS911SubName: Full=Transposase IS3/IS911; chromosome CDS2034672 309 + 0.456311
NA Tcr_1642 Integrase, catalytic regionSubName: Full=Integrase, catalytic region; SubName: Full=Integrase/transposase family protein; SubName: Full=Transposase/integrase family protein; chromosome CDS1795156 816 + 0.469363
NA Tcr_1200 hypothetical protein chromosome CDS1313544 375 + 0.336
NA Tcr_0651 Tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS727742 894 + 0.444072
NA Tcr_0719 DNA-directed DNA polymeraseSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS787819 978 + 0.43047
NA Tcr_2072 hypothetical proteinSubName: Full=DNA breaking-rejoining enzyme; chromosome CDS2288544 2691 + 0.361576
NA Tcr_1673 Competence protein ComEA helix-hairpin-helix regionSubName: Full=Competence protein ComEA helix-hairpin-helix family protein; Flags: Precursor; chromosome CDS1826506 264 - 0.363636
NA Tcr_1672 ATP dependent DNA ligase, centralSubName: Full=ATP dependent DNA ligase, central; chromosome CDS1825637 801 - 0.443196
NA Tcr_2092 hypothetical proteinSubName: Full=DNA breaking-rejoining enzyme; chromosome CDS2309513 2691 + 0.361576
NA Tcr_2052 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS2266265 822 + 0.461071
NA Tcr_0321 TatD-related deoxyribonucleaseSubName: Full=TatD-related deoxyribonuclease; chromosome CDS359997 765 + 0.407843
NA Tcr_1015 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase family protein; chromosome CDS1093814 1182 - 0.485618
NA Tcr_0578 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS652084 747 + 0.461847
NA Tcr_0531 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS594740 594 + 0.469697
NA Tcr_0928 Ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS1005816 438 + 0.47032
NA Tcr_0554 ATP-dependent helicase HrpBSubName: Full=DEAH-box ATP-dependent helicase HrpB; chromosome CDS622087 2547 + 0.462112
NA Tcr_0948 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase; chromosome CDS1022792 1407 - 0.46624
NA Tcr_1921 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS2104399 843 + 0.44484
NA Tcr_0218 ExonucleaseSubName: Full=Exonuclease; chromosome CDS257501 1083 - 0.45614
NA Tcr_2076 Integrase, catalytic regionSubName: Full=Integrase, catalytic region; SubName: Full=Integrase/transposase family protein; SubName: Full=Transposase/integrase family protein; chromosome CDS2295846 816 + 0.469363
NA Tcr_1917 DNA repair protein RadCRecName: Full=UPF0758 protein Tcr_1917; chromosome CDS2099859 714 + 0.466387
NA Tcr_0044 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS52769 2820 + 0.448936
NA Tcr_0012 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS13957 2442 + 0.457002
NA Tcr_1360 replicative DNA helicaseSubName: Full=Primary replicative DNA helicase; EC=3.6.1.-; chromosome CDS1475747 1422 - 0.45429
NA Tcr_0001 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS69 1404 + 0.444444
NA Tcr_0329 Phage integraseSubName: Full=DNA breaking-rejoining enzyme; chromosome CDS369602 1542 + 0.391699
NA Tcr_0124 nuclease (SNase-like)SubName: Full=Nuclease (SNase-like); Flags: Precursor; chromosome CDS157083 828 - 0.411836
NA Tcr_0327 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS367628 606 + 0.470297
NA Tcr_1102 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1185880 1317 + 0.383447
NA Tcr_1168 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1270543 3480 - 0.439655
NA Tcr_1336 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1450926 393 - 0.407125
NA Tcr_1756 NUDIX hydrolaseSubName: Full=NUDIX family hydrolase; chromosome CDS1918531 552 - 0.460145
NA Tcr_0141 hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS174504 339 - 0.451327
NA Tcr_0866 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS944470 1668 - 0.47482
NA Tcr_1410 Phage integraseSubName: Full=Tyrosine recombinase; chromosome CDS1521355 1191 + 0.366919
NA Tcr_1209 exodeoxyribonuclease VII, large subunitSubName: Full=Exodeoxyribonuclease VII large subunit; EC=3.1.11.6; chromosome CDS1321073 1569 - 0.439133
NA Tcr_0003 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS2853 1089 + 0.484848
NA Tcr_0120 A/G-specific adenine glycosylaseSubName: Full=A/G-specific DNA-adenine glycosylase; EC=3.2.2.-; chromosome CDS153051 1053 + 0.470085
NA Tcr_1647 transposaseSubName: Full=Transposase; chromosome CDS1799893 1851 - 0.421934
NA Tcr_1313 conserved hypothetical proteinSubName: Full=Uracil DNA glycosylase superfamily protein; chromosome CDS1429772 507 - 0.43787
NA Tcr_2119 putative transposaseSubName: Full=Transposase; chromosome CDS2342726 219 - 0.30137
NA Tcr_0106 serine/threonine protein kinaseSubName: Full=Serine/threonine protein kinase; chromosome CDS136378 1365 + 0.415385
NA Tcr_0656 Phage integraseSubName: Full=Phage integrase; chromosome CDS732761 1119 - 0.413762
NA Tcr_0938 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1013452 207 + 0.376812
NA Tcr_1592 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1742885 1044 - 0.443487
NA Tcr_1239 DNA ligase, NAD-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1353289 2019 - 0.45369
NA Tcr_0128 UvrD/REP helicaseSubName: Full=ATP-dependent DNA helicase UvrD; EC=3.6.1.-; chromosome CDS160746 2226 + 0.484277
NA Tcr_0377 Integrase, catalytic regionSubName: Full=Integrase/transposase family protein; chromosome CDS426006 1911 - 0.377289
NA Tcr_0766 AAA ATPaseSubName: Full=Recombination protein MgsA; chromosome CDS836036 1362 + 0.496329
NA Tcr_1030 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1106131 633 - 0.436019
NA Tcr_0859 DNA-directed DNA polymeraseSubName: Full=ImpB/mucB/samB family protein; EC=2.7.7.7; chromosome CDS935784 1353 + 0.466371
NA Tcr_0409 Phage integraseRecName: Full=Tyrosine recombinase XerC; chromosome CDS459562 954 + 0.493711
NA Tcr_0440 transcriptional regulator, Fis familySubName: Full=DNA-binding protein Fis; chromosome CDS493697 264 - 0.393939
NA Tcr_0597 ribonuclease TRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; chromosome CDS674070 624 - 0.439103
NA Tcr_0892 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS972407 519 + 0.44316
NA Tcr_1996 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS2195419 1890 - 0.469841
NA Tcr_1269 Helicase c2SubName: Full=Uncharacterized protein; chromosome CDS1384473 1911 - 0.430141
NA Tcr_0481 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS539021 1017 + 0.465093
NA Tcr_0002 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1648 1107 + 0.444444
NA Tcr_0658 C-5 cytosine-specific DNA methylaseSubName: Full=C-5 cytosine-specific DNA methylase; chromosome CDS735114 1947 - 0.482794
NA Tcr_1749 DNA polymerase III chi subunit, HolCSubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; chromosome CDS1910231 441 + 0.453515
NA Tcr_0196 DNA topoisomeraseRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS230244 2508 + 0.472089
NA Tcr_1048 chromosomal replication initiator protein DnaASubName: Full=Regulatory inactivation of DnaA Hda protein; chromosome CDS1125539 714 + 0.404762
NA Tcr_1695 Protein of unknown function UPF0102RecName: Full=UPF0102 protein Tcr_1695; chromosome CDS1851012 363 + 0.424242
NA Tcr_1853 Transposase IS3/IS911SubName: Full=Transposase IS3/IS911; chromosome CDS2029436 303 - 0.412541
NA Tcr_0893 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS972935 603 + 0.451078
NA Tcr_1180 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS1288163 273 + 0.432234
NA Tcr_1859 Integrase, catalytic regionSubName: Full=Integrase, catalytic region; SubName: Full=Integrase/transposase family protein; SubName: Full=Transposase/integrase family protein; chromosome CDS2035034 816 + 0.469363
NA Tcr_0779 DEAD/DEAH box helicase-likeRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS853629 1338 - 0.470105
NA Tcr_1661 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1814254 294 - 0.380952
NA Tcr_1852 Integrase, catalytic regionSubName: Full=Integrase/transposase family protein; chromosome CDS2028543 759 - 0.44137
NA Tcr_0832 Phage integraseSubName: Full=Tyrosine recombinase family protein; chromosome CDS904415 1026 - 0.423977
NA Tcr_2121 Phage integraseSubName: Full=Tyrosine recombinase; chromosome CDS2343502 1302 - 0.40937
NA Tcr_2075 Transposase IS3/IS911SubName: Full=Transposase IS3/IS911; chromosome CDS2295484 309 + 0.456311
NA Tcr_1697 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; chromosome CDS1852123 3549 - 0.474782
NA Tcr_1594 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1744852 2616 + 0.477829
NA Tcr_1120 ExonucleaseSubName: Full=Exonuclease; chromosome CDS1208873 624 + 0.392628
NA Tcr_1358 Nucleoside diphosphate pyrophosphataseSubName: Full=NUDIX family hydrolase; chromosome CDS1473989 609 - 0.430213
NA Tcr_0362 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS411006 699 - 0.446352
NA Tcr_0529 DNA-directed DNA polymeraseSubName: Full=DNA polymerase III, tau subunit; EC=2.7.7.7; chromosome CDS592288 2091 + 0.470588
NA Tcr_1641 Transposase IS3/IS911SubName: Full=Transposase IS3/IS911; chromosome CDS1794794 309 + 0.456311
NA Tcr_2125 Deoxyribodipyrimidine photolyaseSubName: Full=Deoxyribodipyrimidine photo-lyase type I; EC=4.1.99.3; chromosome CDS2346649 1440 + 0.475694
NA Tcr_1115 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1199151 3477 + 0.45614
NA Tcr_0194 DNA processing protein DprA, putativeSubName: Full=DNA protecting protein DprA; chromosome CDS227950 1134 + 0.485009
NA Tcr_1698 Inactivated superfamily I helicase-likeSubName: Full=DNA helicase/exodeoxyribonuclease V, subunit B; EC=3.1.11.5; chromosome CDS1855668 2769 - 0.470928
NA Tcr_2013 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2218774 369 - 0.390244
NA Tcr_1199 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS1313185 327 + 0.373089
NA Tcr_1084 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1164844 1893 + 0.472266
NA Tcr_0088 Phage integraseSubName: Full=Uncharacterized protein; chromosome CDS114857 1284 - 0.373832
NA Tcr_1713 ExonucleaseSubName: Full=Uncharacterized protein; chromosome CDS1873705 882 + 0.473923
NA Tcr_1000 NUDIX hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS1077045 498 + 0.447791
NA Tcr_1883 DEAD/DEAH box helicase-likeSubName: Full=ATP-dependent RNA helicase; chromosome CDS2060218 1206 + 0.450249
NA Tcr_0364 DNA topoisomerase IV, B subunitRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS412468 1887 + 0.472708