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2024-06-01 15:57:39

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 62

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Treponema pallidum subsp. pallidum str. Nichols, Nichols
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
TP0001 chromosomal replication initiator protein (dnaA)RecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS4 1395 + 0.407168
TP0002 DNA polymerase III, subunit beta (dnaN)RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1641 1116 + 0.413082
TP0003 recF protein (recF)RecName: Full=DNA replication and repair protein RecF; chromosome CDS2623 1212 + 0.435644
TP0005 DNA gyrase, subunit A (gyrA)RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS4391 2442 + 0.47543
TP0014 T. pallidum predicted coding region TP0014RecName: Full=Uncharacterized protein TP_0014; chromosome CDS13167 609 + 0.489327
TP0058 replicative DNA helicase (dnaB)RecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS67640 1317 - 0.529992
TP0062 single-strand DNA binding protein (ssb)RecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS70165 531 - 0.538606
TP0065 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS71776 588 + 0.498299
TP0102 rep helicase, single-stranded DNA-dependent ATPase (rep)SubName: Full=Rep helicase, single-stranded DNA-dependent ATPase (Rep); SubName: Full=UvrD/REP family ATP-dependent DNA helicase; chromosome CDS109750 1974 - 0.450861
TP0103 ATP-dependent DNA helicase, putativeSubName: Full=ATP-dependent DNA helicase, putative; SubName: Full=ATP-dependent helicase RecQ; chromosome CDS111788 1824 + 0.527412
TP0105 DNA polymerase I (polA)RecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS115806 2994 + 0.447562
TP0116 excinuclease ABC, subunit B (uvrB)RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS132863 2007 + 0.453413
TP0125 exodeoxyribonuclease (exoA)SubName: Full=Exodeoxyribonuclease (ExoA); SubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS146754 795 + 0.566038
TP0141 methylated-DNA-protein-cysteine S-methyltransferase (dat)SubName: Full=Methylated-DNA--[protein]-cysteine S-methyltransferase; EC=2.1.1.63; SubName: Full=Methylated-DNA-protein-cysteine S-methyltransferase (Dat); chromosome CDS161909 534 + 0.559925
TP0162 Holliday junction DNA helicase (ruvB)RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS183384 1053 - 0.585945
TP0229 DNA polymerase, bacteriophage-typeSubName: Full=DNA polymerase, bacteriophage-type; SubName: Full=Uracil DNA glycosylase; chromosome CDS237401 834 + 0.555156
TP0230 primosomal protein N (priA)RecName: Full=Primosomal protein N; EC=3.6.4.-; AltName: Full=ATP-dependent helicase PriA; chromosome CDS238239 1974 + 0.562817
TP0251 DNA-binding protein IIRecName: Full=DNA-binding protein HU; chromosome CDS262929 318 + 0.54717
TP0303 DNA mismatch repair protein (mutL)RecName: Full=DNA mismatch repair protein MutL; chromosome CDS315967 1947 - 0.575244
TP0310 T. pallidum predicted coding region TP0310SubName: Full=Putative single-stranded DNA-binding protein; SubName: Full=Uncharacterized protein; chromosome CDS326392 384 + 0.585938
TP0328 DNA mismatch repair protein (mutS)RecName: Full=DNA mismatch repair protein MutS; chromosome CDS347468 2703 + 0.540881
TP0343 A/G-specific adenine glycosylase, putativeSubName: Full=A/G-specific adenine glycosylase, putative; SubName: Full=Putative A/G-specific adenine glycosylase; chromosome CDS365621 834 + 0.495204
TP0344 transcription-repair coupling factor (trcF)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS366459 3423 - 0.496348
TP0353 ribonuclease H (rnhA)RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS377198 510 - 0.6
TP0380 DNA repair helicase, putativeSubName: Full=DNA repair helicase, putative; SubName: Full=Putative DNA repair helicase; chromosome CDS405261 1821 - 0.548051
TP0391 integrase/recombinase (codV)RecName: Full=Tyrosine recombinase XerC; chromosome CDS416004 921 + 0.5038
TP0393 smf protein (smf)SubName: Full=SMF family protein; SubName: Full=Smf protein (Smf); chromosome CDS417663 909 + 0.49725
TP0394 DNA topoisomerase I (topA)RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS418604 2196 + 0.478142
TP0395 integrase/recombinase (xprB)RecName: Full=Tyrosine recombinase XerC; chromosome CDS420792 894 + 0.517897
TP0442 DNA repair protein (recN)RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS467790 1722 + 0.551103
TP0472 excinuclease ABC, subunit C (uvrC)RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS499677 2076 - 0.507225
TP0492 DNA primase (dnaG)RecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS526077 1818 + 0.510451
TP0514 excinuclease ABC, subunit A (uvrA)RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS550459 2883 + 0.473118
TP0517 Holliday junction nuclease (ruvC)RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS557904 591 - 0.468697
TP0521 DNA polymerase III, gamma and tau subunits, putativeSubName: Full=DNA polymerase III, gamma and tau subunits, putative; SubName: Full=DNA-directed DNA polymerase III gamma and tau subunits; EC=2.7.7.7; chromosome CDS561736 1272 - 0.495283
TP0526 ATP-dependent helicase (hrpA)SubName: Full=ATP-dependent helicase (HrpA); SubName: Full=ATP-dependent helicase HrpA; chromosome CDS568144 2007 + 0.494768
TP0543 Holliday junction DNA helicase (ruvA)RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS584926 684 - 0.520468
TP0588 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS639853 765 - 0.482353
TP0626 exonuclease, putativeSubName: Full=Exonuclease SbcD; SubName: Full=Exonuclease, putative; chromosome CDS681001 1176 + 0.491497
TP0627 exonuclease (sbcC)RecName: Full=Nuclease SbcCD subunit C; chromosome CDS682173 3144 + 0.465649
TP0634 DNA ligase (lig)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS692381 2472 + 0.511731
TP0636 conserved hypothetical proteinSubName: Full=Recombination protein O; SubName: Full=Uncharacterized protein; chromosome CDS694887 771 - 0.511025
TP0643 DNA polymerase III, subunit epsilon (dnaQ)RecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS704799 648 + 0.466049
TP0669 DNA polymerase III, subunit alpha (dnaE)RecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS730608 3513 - 0.44378
TP0687 DNA recombinase (recG)RecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS752821 2061 - 0.425036
TP0692 recA protein (recA)RecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS758729 1224 - 0.510621
TP0704 single-stranded-DNA-specific exonuclease (recJ)SubName: Full=Single-stranded-DNA-specific exonuclease; SubName: Full=Single-stranded-DNA-specific exonuclease (RecJ); chromosome CDS768570 2121 - 0.532296
TP0710 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS776685 1971 + 0.523085
TP0731 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS796674 711 + 0.589311
TP0770 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; SubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS835978 1950 + 0.534872
TP0775 endonuclease III (nth)RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS842892 636 + 0.551887
TP0810 DNA adenine methyltransferase (dam)RecName: Full=DNA adenine methylase; EC=2.1.1.72; AltName: Full=DNA adenine methyltransferase; AltName: Full=Deoxyadenosyl-methyltransferase; AltName: Full=M.TpaI; chromosome CDS878660 912 + 0.550439
TP0898 ATP-dependent nuclease, subunit A, putativeSubName: Full=ATP-dependent nuclease, subunit A, putative; SubName: Full=Exodeoxyribonuclease V beta subunit; EC=3.1.11.5; chromosome CDS975830 3720 - 0.579839
TP0899 T. pallidum predicted coding region TP0899SubName: Full=Uncharacterized protein; chromosome CDS979546 588 - 0.537415
TP0913 conserved hypothetical proteinRecName: Full=UPF0102 protein TP_0913; chromosome CDS991495 381 + 0.488189
TP0979 conserved hypothetical proteinSubName: Full=Magnesium (Mg2+)-dependent deoxyribonuclease; SubName: Full=Uncharacterized protein; chromosome CDS1062241 774 + 0.516796
TP0994 conserved hypothetical proteinSubName: Full=Magnesium (Mg2+)-dependent deoxyribonuclease; SubName: Full=Uncharacterized protein; chromosome CDS1078616 810 + 0.546914
TP1004 recombination protein (recR)RecName: Full=Recombination protein RecR; chromosome CDS1092553 606 - 0.559406
TP1005 DNA polymerase III, subunits gamma and tau (dnaH)SubName: Full=DNA polymerase III, subunits gamma and tau (DnaH); SubName: Full=DNA-directed DNA polymerase III gamma and tau subunits; EC=2.7.7.7; chromosome CDS1093232 1719 - 0.504363
TP1006 DNA gyrase, subunit B (gyrB)RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS1095009 1914 - 0.483804
TP1028 DNA helicase II (uvrD)SubName: Full=DNA helicase II (UvrD); SubName: Full=Excision endonuclease subunit UvrD; chromosome CDS1121029 2013 - 0.554396
TP1029 T. pallidum predicted coding region TP1029RecName: Full=Uncharacterized protein TP_1029; chromosome CDS1123124 687 - 0.614265