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2024-06-09 21:43:44

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 131

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Xylella fastidiosa Temecula1, Temecula1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PD0712 transposaseSubName: Full=Transposase; chromosome CDS874142 93 + 0.483871
NA PD2023 conserved hypothetical proteinRecName: Full=Ribosomal RNA large subunit methyltransferase K/L; Includes: RecName: Full=23S rRNA m2G2445 methyltransferase; EC=2.1.1.173; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RlmL; Includes: RecName: Full=23S rRNA m7G2069 methyltransferase; EC=2.1.1.264; AltName: Full=rRNA (guanine-N(7)-)-methyltransferase RlmK; chromosome CDS2380069 2208 - 0.581069
NA PD1730 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2017510 1419 + 0.566596
NA PD1137 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1328703 1419 + 0.561663
NA PD0835 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1033883 2523 + 0.571145
NA PD1275 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1487117 468 - 0.594017
NA PD0857 histone-like proteinSubName: Full=Histone-like protein; chromosome CDS1066798 393 - 0.473282
NA PD0910 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1120075 1191 + 0.474391
NA PD0923 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1128417 1191 + 0.474391
NA PD0382 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS464933 1419 + 0.568006
NA PD0801 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS989672 222 - 0.5
NA PD0789 resolvase/integrase-like proteinSubName: Full=Resolvase/integrase-like protein; chromosome CDS976797 849 + 0.575972
NA PD0939 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1139390 1176 - 0.477891
NA PD1429 DNA helicaseSubName: Full=DNA helicase; chromosome CDS1660432 3573 + 0.560313
NA PD1606 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1857865 795 + 0.642767
NA PD1321 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1550281 168 - 0.511905
NA PD1213 KDO kinaseRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS1414311 780 - 0.532051
NA PD0121 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS154621 573 - 0.509599
NA PD0225 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS288771 660 + 0.557576
NA PD1324 site-specific DNA-methyltransferaseSubName: Full=Site-specific DNA-methyltransferase; chromosome CDS1552066 732 - 0.579235
NA PD0804 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS992100 588 - 0.530612
NA PD1561 replication related proteinSubName: Full=Replication related protein; chromosome CDS1809886 702 - 0.564103
NA PD1601 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1853175 1056 - 0.635417
NA PD0274 conserved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; chromosome CDS351208 603 + 0.588723
NA PD1649 DNA modification methylaseSubName: Full=DNA modification methylase; chromosome CDS1908267 525 - 0.453333
NA PD1586 conserved hypothetical proteinRecName: Full=UPF0102 protein PD_1586; chromosome CDS1834869 366 - 0.551913
NA PD1415 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1650539 273 + 0.479853
NA PD0673 ATPaseSubName: Full=ATPase; chromosome CDS826068 1362 + 0.544787
NA PD1194 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1389925 1419 + 0.568006
NA PD1014 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1212782 1653 + 0.571688
NA PD0154 hydrolaseSubName: Full=Hydrolase; chromosome CDS196155 558 - 0.541219
alkA PD0572 DNA-3-methyladenine glycosidaseSubName: Full=DNA-3-methyladenine glycosidase; chromosome CDS701692 651 + 0.546851
alkB PD0550 alkylated DNA repair proteinSubName: Full=Alkylated DNA repair protein; chromosome CDS675267 603 + 0.529022
comE PD1558 DNA transport competence proteinSubName: Full=DNA transport competence protein; chromosome CDS1807111 330 - 0.469697
dcm PD0577 site-specific DNA-methyltransferaseSubName: Full=Site-specific DNA-methyltransferase; chromosome CDS708396 1068 - 0.572097
deaD PD0205 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS261295 1848 - 0.570887
dinJ PD1099 DNA-damage-inducible proteinSubName: Full=DNA-damage-inducible protein; chromosome CDS1298233 264 + 0.583333
dnaA PD0001 chromosomal replication initiatorRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS146 1320 + 0.412879
dnaB PD1701 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS1979353 1416 - 0.504237
dnaE PD0165 DNA polymerase III alpha chainRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS209003 3582 - 0.547739
dnaG PD1647 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1905556 1734 + 0.55594
dnaN PD0002 DNA polymerase III beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1747 1101 + 0.374205
dnaQ PD1217 DNA polymerase III epsilon chainSubName: Full=DNA polymerase III epsilon chain; chromosome CDS1418214 720 - 0.513889
dnaX PD1059 DNA polymerase III subunits gamma and tauSubName: Full=DNA polymerase III subunits gamma and tau; chromosome CDS1261440 1632 - 0.515931
dpnA PD1339 DNA methylaseSubName: Full=DNA methylase; chromosome CDS1565808 714 - 0.570028
dpoL PD1727 phage-related DNA polymeraseSubName: Full=Phage-related DNA polymerase; chromosome CDS2014684 2181 + 0.627235
dpoL PD1134 phage-related DNA polymeraseSubName: Full=Phage-related DNA polymerase; chromosome CDS1325715 2181 + 0.627235
dpoL PD1322 phage-related DNA polymeraseSubName: Full=Phage-related DNA polymerase; chromosome CDS1550516 1134 + 0.620811
exoA PD0128 exodeoxyribonucleaseSubName: Full=Exodeoxyribonuclease; chromosome CDS163969 801 + 0.481898
fis PD0811 DNA-binding proteinRecName: Full=Putative Fis-like DNA-binding protein; chromosome CDS999260 273 - 0.512821
gyrA PD1935 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS2273232 2682 - 0.556674
gyrB PD0005 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4743 2445 + 0.466667
himA PD1910 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS2240030 300 - 0.46
himD PD1455 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS1695967 315 - 0.495238
holA PD1232 DNA polymerase III delta subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS1435180 1032 + 0.546512
holB PD1498 DNA polymerase III delta subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS1738698 972 - 0.549383
holC PD0104 DNA polymerase III holoenzyme chi subunitSubName: Full=DNA polymerase III holoenzyme chi subunit; chromosome CDS133969 426 - 0.605634
hrpA PD0619 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS759506 4437 + 0.571557
hrpB PD0505 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS606429 2511 - 0.571087
hsdR PD2074 type I restriction-modification system endonucleaseSubName: Full=Type I restriction-modification system endonuclease; chromosome CDS2457629 3024 - 0.516865
hupB PD0475 histone-like proteinRecName: Full=DNA-binding protein HU; chromosome CDS569629 285 + 0.487719
int PD1139 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1330522 1020 + 0.52549
int PD1196 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1391744 1020 + 0.536274
int PD0990 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1194756 1233 - 0.589619
int PD1019 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1216888 1020 + 0.553922
int PD0764 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS946367 1020 - 0.544118
int PD1075 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1276043 1194 - 0.538526
int PD0384 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS466592 1020 + 0.529412
int PD1495 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1737843 411 + 0.527981
ligA PD1940 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2279626 2496 - 0.580128
mfd PD0033 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS39807 3588 + 0.544314
mod PD0833 methyltransferase, type III restriction-modification systemSubName: Full=Methyltransferase, type III restriction-modification system; chromosome CDS1032056 1629 + 0.519337
mttC PD0878 type V secretory pathway proteinSubName: Full=Type V secretory pathway protein; chromosome CDS1089690 807 + 0.51425
mutL PD1897 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS2223787 1866 - 0.578778
mutM PD0053 formamidopyrimidine DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS71282 816 + 0.520833
mutM PD0138 formamidopyrimidine DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS176365 816 + 0.520833
mutS PD1081 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1280970 2607 - 0.547372
mutT PD0527 mutator MutT proteinSubName: Full=Mutator MutT protein; chromosome CDS644399 489 + 0.527607
mutT PD0663 dNTP pyrophosphohydrolaseSubName: Full=DNTP pyrophosphohydrolase; chromosome CDS812697 459 - 0.535948
mutY PD0882 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; chromosome CDS1093959 1050 + 0.515238
nfi PD0899 endonuclease VRecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; chromosome CDS1108645 720 + 0.515278
nohA PD1110 phage-related packaging proteinSubName: Full=Phage-related packaging protein; chromosome CDS1306975 576 - 0.546875
nth PD1523 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1769355 639 - 0.513302
nudh PD1674 (di)nucleoside polyphosphate hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS1943770 573 - 0.513089
ogt PD1975 6-O-methylguanine-DNA methyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS2323200 519 + 0.518304
parC PD0594 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS727421 2250 - 0.541778
parE PD0539 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS662603 1890 - 0.52381
polA PD0396 DNA polymerase ISubName: Full=DNA polymerase I; chromosome CDS480267 2772 + 0.528139
priA PD2047 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS2411294 2202 + 0.54178
radC PD0117 DNA repair proteinRecName: Full=UPF0758 protein PD_0117; chromosome CDS149595 675 - 0.568889
rdgC PD1574 recombination associated proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS1824373 909 + 0.513751
recA PD0093 recombination protein RecARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS117832 1044 + 0.512452
recB PD1652 exodeoxyribonuclease V beta chainSubName: Full=Exodeoxyribonuclease V beta chain; chromosome CDS1914257 3732 - 0.608789
recC PD1653 exodeoxyribonuclease V gamma chainSubName: Full=Exodeoxyribonuclease V gamma chain; chromosome CDS1917985 3366 - 0.609031
recD PD1651 exodeoxyribonuclease V alpha chainSubName: Full=Exodeoxyribonuclease V alpha chain; chromosome CDS1912108 1920 - 0.629687
recF PD0003 DNA replication and repair RecF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3153 1095 + 0.410046
recG PD1705 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1987389 2157 - 0.562819
recJ PD0402 single-stranded DNA exonucleaseSubName: Full=Single-stranded DNA exonuclease; chromosome CDS490532 1842 + 0.549946
recN PD1373 recombination protein NRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1596661 1674 + 0.544205
recO PD1292 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1510093 732 + 0.534153
recQ PD0617 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS756923 1803 - 0.566833
recR PD1057 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS1260324 597 - 0.566164
rep PD2041 ATP-dependent DNA helicase/DNA helicase IISubName: Full=ATP-dependent DNA helicase/DNA helicase II; chromosome CDS2400524 1977 - 0.508852
rhlB PD2053 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS2419308 1632 - 0.515319
rhlE PD0157 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS200530 1341 + 0.515287
rnhA PD1218 ribonuclease HRecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; chromosome CDS1418930 453 - 0.520971
rnhB PD0321 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS413390 705 - 0.533333
rnt PD1207 ribonuclease TRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS1409027 636 + 0.506289
ruvA PD0887 holliday junction binding protein, DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1097492 585 + 0.507692
ruvB PD0889 holliday junction binding protein, DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1100096 1032 + 0.522287
ruvC PD0886 holliday junction resolvase, endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1096885 522 + 0.511494
sbcB PD0793 exodeoxyribonuclease IRecName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; chromosome CDS980327 1485 - 0.56229
smf PD1765 DNA processing chain ASubName: Full=DNA processing chain A; chromosome CDS2055662 1146 + 0.574171
ssb PD1603 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1855136 447 + 0.541387
ssb PD0626 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS773381 495 + 0.533333
ssb PD1017 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1216175 447 + 0.557047
sss PD0700 site-specific recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS856356 885 + 0.550282
tnp PD1333 IS1327 transposaseSubName: Full=IS1327 transposase; chromosome CDS1560919 567 + 0.522046
topA PD1767 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS2058300 2448 + 0.51634
traE PD1023 truncated conjugal transfer proteinRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS1221401 948 + 0.518987
ung PD2049 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS2415990 762 - 0.514436
uvrA PD1444 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1680575 2898 + 0.543823
uvrB PD1734 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2020607 2010 - 0.498507
uvrC PD1325 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1553486 1866 + 0.551983
uvrD PD0037 DNA helicase IISubName: Full=DNA helicase II; chromosome CDS46613 2187 - 0.546411
xerD PD0652 integrase/recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS799772 975 - 0.566154
xseA PD1901 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2230006 1335 + 0.593258
xseB PD1513 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1758646 267 - 0.550562
xthA PD0864 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; chromosome CDS1074703 789 - 0.538657
yjjV PD0145 deoxyribonucleaseSubName: Full=Deoxyribonuclease; chromosome CDS186039 783 - 0.521073
yoaA PD1798 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS2099787 2022 + 0.586548