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2024-05-29 01:21:16

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 91

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Zymomonas mobilis subsp. mobilis ZM4, ZM4; ATCC 31821
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA ZMO0785 endonucleaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS781602 540 + 0.466667
NA ZMO0148 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS133995 807 - 0.513011
NA ZMO0888 putative transposaseSubName: Full=Resolvase domain protein; chromosome CDS894696 555 - 0.448649
NA ZMO1762 predicted endonucleaseSubName: Full=Uncharacterized protein; chromosome CDS1806181 387 + 0.447028
NA ZMO1426 DNA repair proteinSubName: Full=DNA repair protein RadC; chromosome CDS1441905 426 + 0.403756
NA ZMO1864 transposaseSubName: Full=Transposase IS5 family protein; chromosome CDS1910097 480 + 0.4875
NA ZMO0955 conserved hypothetical protein chromosome CDS970808 276 - 0.398551
NA ZMO1455 transposaseSubName: Full=Resolvase domain protein; chromosome CDS1472781 597 + 0.469012
NA ZMO1989 methylated DNA-protein cysteine methyltransferaseSubName: Full=Methylated-DNA/protein-cysteine methyltransferase; chromosome CDS2050073 501 + 0.477046
NA ZMO1185 phage SPO1 DNA polymerase-related proteinSubName: Full=Uracil-DNA glycosylase superfamily; Flags: Precursor; chromosome CDS1205936 795 + 0.352201
NA ZMO0244 HU DNA-binding proteinSubName: Full=Histone family protein DNA-binding protein; chromosome CDS238193 276 - 0.48913
NA ZMO1562 NTP pyrophosphohydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS1592135 468 + 0.431624
NA ZMO1093 Mg-dependent DNaseSubName: Full=Hydrolase, TatD family; chromosome CDS1103599 777 + 0.462033
NA ZMO1041 NTP pyrophosphohydrolase chromosome CDS1056452 558 - 0.444444
NA ZMO0574 DNA and RNA helicaseSubName: Full=UvrD/REP helicase; chromosome CDS575446 2307 - 0.465106
NA ZMO1194 DNA processing chain ASubName: Full=DNA protecting protein DprA; chromosome CDS1218755 1158 - 0.513817
NA ZMO0673 recombinational DNA repair protein chromosome CDS665783 759 + 0.428195
NA ZMO1644 DNA helicaseSubName: Full=DEAD/DEAH box helicase domain protein; chromosome CDS1686502 2079 - 0.500722
NA ZMO0892 DNA helicase chromosome CDS899175 2652 + 0.492836
NA ZMO1417 DNA and RNA helicaseSubName: Full=DEAD/DEAH box helicase domain protein; chromosome CDS1427547 1377 + 0.529412
NA ZMO0930 hypothetical protein chromosome CDS950051 441 - 0.478458
NA ZMO0121 ATPaseSubName: Full=AAA ATPase central domain protein; chromosome CDS108980 1350 + 0.477778
NA ZMO0088 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS79720 705 - 0.421277
NA ZMO1582 G:T/U mismatch-specific DNA glycosylase chromosome CDS1619013 492 - 0.453252
NA ZMO1214 DNA and RNA helicase chromosome CDS1238222 1479 + 0.50169
NA ZMO1484 DNA and RNA helicaseSubName: Full=UvrD/REP helicase; chromosome CDS1507125 3144 - 0.471374
NA ZMO1535 conserved hypothetical protein chromosome CDS1564380 303 + 0.425743
NA ZMO0325 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS323236 513 + 0.518519
NA ZMO1536 ATPaseSubName: Full=ATPase involved in DNA repair; chromosome CDS1565172 1668 - 0.277578
NA ZMO1099 helicaseSubName: Full=Double-strand break repair protein AddB; chromosome CDS1113043 2982 - 0.491616
NA ZMO0711 ATPaseSubName: Full=ATPase involved in DNA replication initiation; chromosome CDS706372 645 + 0.493023
NA ZMO0680 conserved hypothetical protein chromosome CDS671414 1038 + 0.44027
NA ZMO1646 transcription-repair coupling factor chromosome CDS1688894 3399 + 0.492792
NA ZMO1401 probable nucleaseSubName: Full=Exodeoxyribonuclease III Xth; chromosome CDS1413496 786 - 0.456743
NA ZMO0351 DNA and RNA helicase chromosome CDS344424 5202 + 0.473664
NA ZMO0630 hypothetical protein chromosome CDS623618 384 + 0.502604
addA ZMO1098 ATP-dependent exoDNAse beta subunitSubName: Full=Double-strand break repair helicase AddA; chromosome CDS1109545 3489 - 0.485239
babI ZMO1005 adenine-specific methyltransferase chromosome CDS1022339 1122 + 0.439394
dnaA ZMO1356 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1370683 1455 - 0.485911
dnaB ZMO0865 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS872822 1536 + 0.48763
dnaE ZMO1538 DNA polymerase III alpha subunit chromosome CDS1567772 3375 - 0.512
dnaG ZMO1622 DNA primase chromosome CDS1661223 1062 + 0.525424
dnaN ZMO0980 DNA polymerase III beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS996814 1110 - 0.472973
dnaQ ZMO0039 DNA polymerase III epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS40339 705 - 0.510638
dnaZX ZMO0861 DNA polymerase III tau subunit chromosome CDS869297 1794 + 0.46544
ex3 ZMO1699 exonuclease III chromosome CDS1748002 810 - 0.474074
gyrA ZMO0692 type IIA topoisomerase A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS687069 2778 - 0.49496
gyrB ZMO0411 topoisomerase B subunitRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS412919 1983 + 0.486636
gyrB ZMO1583 type IIA topoisomerase B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS1619888 2439 - 0.501025
helY ZMO0219 ATP-dependent helicaseSubName: Full=Helicase domain protein; chromosome CDS210925 2832 + 0.47952
himA ZMO1122 integration host factor alpha-subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1138224 342 - 0.467836
holA ZMO1433 DNA polymerase III delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS1449121 1014 - 0.436884
holB ZMO1091 DNA polymerase III delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; chromosome CDS1101024 993 + 0.465257
holC ZMO1308 DNA polymerase III chi subunitSubName: Full=DNA polymerase III chi subunit HolC; chromosome CDS1323127 447 - 0.47651
hrpB ZMO0565 ATP-dependent helicases chromosome CDS563499 2514 + 0.486078
ihfB ZMO1801 integration host factor beta-subunitRecName: Full=Integration host factor subunit beta; chromosome CDS1843616 285 + 0.445614
intZ ZMO1930 integraseSubName: Full=Integrase family protein; chromosome CDS1984282 1200 + 0.633333
ligA ZMO0364 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS366120 2196 + 0.43898
mboA ZMO0575 N6-adenine-specific methylaseSubName: Full=Methyltransferase; chromosome CDS577816 552 - 0.514493
mutL ZMO0354 DNA mismatch repair enzyme chromosome CDS352884 1893 - 0.501321
mutM ZMO1187 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1208657 813 - 0.369004
mutS ZMO1907 DNA mismatch repair ATPase chromosome CDS1956556 2676 - 0.450299
mutY ZMO1677 A/G-specific DNA glycosylaseSubName: Full=A/G-specific adenine glycosylase; chromosome CDS1720215 1122 + 0.487522
nth ZMO0706 predicted endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS702084 648 - 0.484568
parC ZMO1054 DNA topoisomerase IV subunitARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1066743 2247 + 0.460169
phrB ZMO1450 DNA photolyaseSubName: Full=Deoxyribodipyrimidine photo-lyase; EC=4.1.99.3; chromosome CDS1468622 1410 + 0.42766
polA ZMO0227 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS219484 2766 + 0.475777
priA ZMO1921 primosomal protein NSubName: Full=Primosomal protein N; chromosome CDS1971322 2169 + 0.461503
radC ZMO0663 DNA repair proteinSubName: Full=DNA repair protein RadC; chromosome CDS656004 684 - 0.475146
recA ZMO1166 recombinase A chromosome CDS1181121 1020 - 0.468627
recF ZMO1584 recombinational DNA repair ATPaseRecName: Full=DNA replication and repair protein RecF; chromosome CDS1622469 1131 - 0.511052
recJ ZMO1231 single-stranded DNA-specific exonuclease chromosome CDS1251782 1578 + 0.5
recN ZMO1956 ATPaseRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2011301 1677 - 0.494335
recR ZMO0812 recombinational DNA repair proteinRecName: Full=Recombination protein RecR; chromosome CDS814355 597 + 0.500838
rnhA ZMO1601 ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS1642109 471 + 0.494692
rnhB ZMO1004 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1021495 648 + 0.467593
ruvA ZMO0155 Holliday junction resolvasome DNA-binding subunitRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS140422 642 + 0.468847
ruvB ZMO0158 Holliday junction resolvasome helicase subunitRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS142769 1044 + 0.503831
ruvC ZMO0154 Holliday junction resolvasome endonuclease subunitRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS139877 504 + 0.549603
ssb ZMO1542 single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1573978 582 + 0.505155
tag ZMO0377 3-methyladenine DNA glycosylase chromosome CDS383220 630 + 0.444444
topA ZMO1193 DNA topoisomerase I chromosome CDS1214965 3654 - 0.519157
ung ZMO1114 uracil-DNA glycosylaseSubName: Full=Phage SPO1 DNA polymerase-related protein; chromosome CDS1128573 621 + 0.505636
ung ZMO1648 uracil-DNA glycosylase chromosome CDS1693272 738 + 0.466125
uvrA ZMO1588 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1624785 2841 + 0.484688
uvrB ZMO0362 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS362518 2223 + 0.470085
uvrC ZMO0672 excinuclease complex nuclease subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS663747 1995 + 0.43208
xerD ZMO0598 integraseRecName: Full=Tyrosine recombinase XerC; chromosome CDS596051 924 + 0.465368
xerD ZMO1914 integraseRecName: Full=Tyrosine recombinase XerC; chromosome CDS1964449 924 - 0.455628
xseA ZMO0300 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS302319 1635 + 0.499694
xseB ZMO0856 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS865992 246 - 0.47561