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2024-06-17 13:36:20

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 154

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Corynebacterium diphtheriae NCTC 13129, NCTC 13129
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA DIP1510 Putative integrase/recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS1533714 909 - 0.484048
NA DIP0725 Putative hydrolaseSubName: Full=Putative hydrolase; chromosome CDS699791 684 + 0.535088
NA DIP2214 Conserved hypothetical proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS2304729 960 + 0.453125
NA DIP0828 Putative DNA repair proteinSubName: Full=Putative DNA repair protein; chromosome CDS804154 552 - 0.570652
NA DIP1076 Putative DNA polymeraseSubName: Full=Putative DNA polymerase; chromosome CDS1057910 705 - 0.479433
NA DIP1517 Putative transposaseSubName: Full=Putative transposase; chromosome CDS1540598 813 - 0.521525
NA DIP0133 Putative DNA repair proteinSubName: Full=Putative DNA repair protein; chromosome CDS113144 741 + 0.596491
NA DIP0131 Putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS110238 2346 - 0.617647
NA DIP2033 Putative transposaseSubName: Full=Putative transposase; chromosome CDS2085350 132 - 0.530303
NA DIP1423 Putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS1441388 3954 + 0.472939
NA DIP2295 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2392713 363 - 0.5427
NA DIP2085 Putative insertion elementSubName: Full=Putative insertion element; chromosome CDS2138047 483 + 0.496894
NA DIP1956 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2007058 438 - 0.547945
NA DIP0752 IS element transposaseSubName: Full=IS element transposase; SubName: Full=Putative transposase; chromosome CDS727618 1380 + 0.489855
NA DIP1110 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1094680 180 + 0.505556
NA DIP1418 Putative helicaseSubName: Full=Putative helicase; chromosome CDS1435342 2535 + 0.469428
NA DIP1859 DeaD/DeaH family helicaseSubName: Full=DeaD/DeaH family helicase; chromosome CDS1901706 1950 + 0.539487
NA DIP1239 Putative helicaseSubName: Full=Putative helicase; chromosome CDS1240851 2793 - 0.499105
NA DIP0723 Putative helicaseSubName: Full=Putative helicase; chromosome CDS695396 3231 + 0.518415
NA DIP1017 Putative NUDIX-family hydrolaseSubName: Full=Putative NUDIX-family hydrolase; chromosome CDS992898 396 - 0.477273
NA DIP1615 Putative serine/threonine protein kinaseSubName: Full=Putative serine/threonine protein kinase; chromosome CDS1647084 2193 + 0.543548
NA DIP0435 Putative insertion element DNA-binding proteinSubName: Full=Putative insertion element DNA-binding protein; chromosome CDS398891 483 - 0.540373
NA DIP1650 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1683094 324 - 0.512346
NA DIP1138 Putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS1124164 579 + 0.500864
NA DIP0113 Putative riboflavin biosynthesis proteinSubName: Full=Putative riboflavin biosynthesis protein; chromosome CDS93040 1341 + 0.619687
NA DIP2123 Putative transposaseSubName: Full=Putative transposase; chromosome CDS2175813 813 - 0.519065
NA DIP2369 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS2472392 873 + 0.586483
NA DIP0264 Putative helicaseSubName: Full=Putative helicase; chromosome CDS226618 1122 - 0.581996
NA DIP0817 Putative phage integraseSubName: Full=Putative phage integrase; chromosome CDS790953 1065 + 0.644131
NA DIP0037 Conserved hypothetical proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS37736 915 + 0.485246
NA DIP1837 Putative phage integraseSubName: Full=Putative phage integrase; chromosome CDS1880040 816 - 0.584559
NA DIP1525 Putative insertion element DNA-binding proteinSubName: Full=Putative insertion element DNA-binding protein; chromosome CDS1547110 483 + 0.540373
NA DIP0343 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS308897 525 + 0.430476
NA DIP1445 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1464212 1329 + 0.51392
NA DIP1349 Conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1361421 552 - 0.461957
NA DIP1897 Putative transposase (partial)SubName: Full=Putative transposase (Partial); chromosome CDS1949524 330 + 0.478788
NA DIP0026 Putative transposase (partial)SubName: Full=Putative transposase (Partial); Flags: Fragment; chromosome CDS25519 234 - 0.521368
NA DIP1177 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1175639 1077 + 0.506964
NA DIP2265 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2357845 711 + 0.490858
NA DIP1896 Putative transposase (partial)SubName: Full=Putative transposase (Partial); chromosome CDS1949307 171 + 0.549708
NA DIP0757A IS element transposase (partial)SubName: Full=IS element transposase (Partial); Flags: Fragment; chromosome CDS736323 231 - 0.528139
NA DIP0306 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS273265 738 + 0.577236
NA DIP1351 Conserved hypothetical protein (putative ATP/GTP binding protein)SubName: Full=Putative uncharacterized protein; chromosome CDS1365030 1371 - 0.474836
NA DIP1518 Putative insertion element DNA-binding proteinSubName: Full=Putative insertion element DNA-binding protein; chromosome CDS1541458 483 - 0.540373
NA DIP1185 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1183899 639 + 0.466354
NA DIP1055 Conserved hypothetical proteinRecName: Full=Endonuclease NucS; EC=3.1.-.-; chromosome CDS1036006 690 + 0.498551
NA DIP1212 Putative RNA helicaseSubName: Full=Putative RNA helicase; chromosome CDS1213407 1359 - 0.509198
NA DIP1023 SNF2/RAD54 family proteinSubName: Full=SNF2/RAD54 family protein; chromosome CDS999109 3090 + 0.518447
NA DIP1266 Putative transposaseSubName: Full=IS element transposase; SubName: Full=Putative transposase; chromosome CDS1273380 1380 + 0.489855
NA DIP0077 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS66921 801 + 0.55181
NA DIP1068 Putative NUDIX/MutT-family hydrolaseSubName: Full=Putative NUDIX/MutT-family hydrolase; chromosome CDS1049093 810 + 0.537037
NA DIP0598 Putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS565332 1134 - 0.537919
NA DIP1808 Putative insertion element DNA-binding proteinSubName: Full=Putative insertion element DNA-binding protein; chromosome CDS1858313 483 + 0.540373
NA DIP0068 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS60895 309 - 0.598706
NA DIP0722 Putative ATP-dependent DNA helicaseSubName: Full=Putative ATP-dependent DNA helicase; chromosome CDS692220 3183 + 0.526233
NA DIP0829 Putative endonucleaseSubName: Full=Putative endonuclease; chromosome CDS804836 807 + 0.536555
NA DIP1324 Putative primosomal proteinSubName: Full=Putative primosomal protein; chromosome CDS1335564 2028 - 0.4857
NA DIP1251 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1254942 867 + 0.476355
NA DIP2371 Putative conserved integral membrane proteinSubName: Full=Putative conserved integral membrane protein; chromosome CDS2476084 3330 + 0.567868
NA DIP0843 Putative transposaseSubName: Full=Putative transposase; chromosome CDS820987 1377 - 0.48947
NA DIP2074 Putative tranposaseSubName: Full=Putative tranposase; chromosome CDS2127573 309 + 0.543689
NA DIP0337 Putative phage integraseSubName: Full=Putative phage integrase; chromosome CDS306912 459 - 0.53159
NA DIP1016 Putative helicaseSubName: Full=Putative helicase; chromosome CDS989756 3132 - 0.445722
NA DIP0873 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS847895 855 + 0.528655
NA DIP1019 Putative exported proteinSubName: Full=Putative exported protein; chromosome CDS995636 411 + 0.53528
NA DIP1771 Putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS1815992 630 - 0.579365
NA DIP0134 Putative DNA-repair proteinSubName: Full=Putative DNA-repair protein; chromosome CDS113937 588 + 0.581633
NA DIP2053 Putative protein kinaseSubName: Full=Uncharacterized protein; chromosome CDS2100295 2163 + 0.606103
NA DIP0764 Putative transposaseSubName: Full=Putative transposase; chromosome CDS740277 1314 - 0.592846
NA DIP1980 Putative DNA repair proteinSubName: Full=Putative DNA repair protein; chromosome CDS2027764 888 + 0.591216
NA DIP1895 Putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS1947027 1842 - 0.565147
NA DIP1511 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1534889 1152 - 0.499132
NA DIP0604 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS570425 1527 + 0.538965
NA DIP0805 Putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS783728 2004 - 0.585828
NA DIP1487 Putative DNA repair related proteinSubName: Full=Putative DNA repair related protein; chromosome CDS1508539 510 - 0.496078
NA DIP0758 Putative transposase (partial)SubName: Full=Putative transposase (Partial); chromosome CDS736810 339 + 0.634218
NA DIP1026 Conserved hypothetical ATP-binding proteinSubName: Full=Conserved hypothetical ATP-binding protein; chromosome CDS1004173 2565 + 0.4846
NA DIP0333 Putative DNA polymerase III, delta' subunitSubName: Full=Putative DNA polymerase III, delta subunit; chromosome CDS304045 1266 + 0.629542
NA DIP0757 IS element transposase (partial)SubName: Full=IS element transposase (Partial); chromosome CDS736001 267 - 0.546816
NA DIP0633 Putative exodeoxyribonucleaseSubName: Full=Putative exodeoxyribonuclease; chromosome CDS604219 906 + 0.53532
NA DIP1573 Putative DNA polymerase III epsilon subunitSubName: Full=Putative DNA polymerase III epsilon subunit; chromosome CDS1600226 1347 + 0.519673
NA DIP1769 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1813394 975 - 0.585641
NA DIP1526 Putative transposaseSubName: Full=Putative transposase; chromosome CDS1547640 813 + 0.521525
NA DIP0242 Putative IS element transposaseSubName: Full=Putative IS element transposase; chromosome CDS206740 312 - 0.423077
NA DIP2083 Putative transposase for insertion elementSubName: Full=Putative transposase for insertion element; chromosome CDS2135858 1209 + 0.535153
NA DIP0434 Putative transposaseSubName: Full=Putative transposase; chromosome CDS398031 813 - 0.527675
NA DIP1955 Putative transposaseSubName: Full=Putative transposase; chromosome CDS2006198 810 - 0.51358
NA DIP0151 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS122552 306 + 0.624183
NA DIP0047 Putative transposase (pseudogene) chromosome CDS41066 1549 - 0.557134
NA DIP1366 Putative transposaseSubName: Full=Putative transposase; chromosome CDS1382700 1380 + 0.489855
NA DIP2047 Putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS2093716 708 + 0.59322
NA DIP0346 Putative IS element tranposase (partial)SubName: Full=Putative IS element tranposase (Partial); chromosome CDS309772 162 + 0.5
NA DIP1809 Putative transposaseSubName: Full=Putative transposase; chromosome CDS1858843 813 + 0.517835
NA DIP1513 Conserved hypothetical proteinRecName: Full=UPF0102 protein DIP1513; chromosome CDS1537574 528 - 0.471591
NA DIP2124 Putative insertion element DNA-binding proteinSubName: Full=Putative insertion element DNA-binding protein; chromosome CDS2176673 483 - 0.544513
NA DIP0182 Putative phage integraseSubName: Full=Putative phage integrase; chromosome CDS155600 1227 - 0.546047
NA DIP0772 Putative ATP-dependent DNA helicaseSubName: Full=Putative ATP-dependent DNA helicase; chromosome CDS750488 1665 - 0.590991
NA DIP1963 possible transposaseSubName: Full=Possible transposase; chromosome CDS2010331 1452 + 0.489669
NA DIP1894 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1944430 2598 - 0.523865
NA DIP0717 Putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS688659 1311 - 0.559878
NA DIP1804 Putative single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1852795 489 - 0.580777
NA DIP1988 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2037819 981 + 0.595311
NA DIP0049 Putative transposase (partial)SubName: Full=Putative transposase (Partial); Flags: Fragment; chromosome CDS42736 234 + 0.491453
NA DIP0349 Putative alkylated DNA repair proteinSubName: Full=Putative alkylated DNA repair protein; chromosome CDS311422 699 + 0.608011
NA DIP1355 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1370802 2655 - 0.460264
NA DIP2304 Putative DNA repair glycosylaseSubName: Full=Putative DNA repair glycosylase; chromosome CDS2399933 855 + 0.584795
NA DIP1713 Putative DNA-repair related proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1750120 729 - 0.540466
NA DIP1025 Putative exonuclease, SbcD-familySubName: Full=Putative exonuclease, SbcD-family; chromosome CDS1003052 1122 + 0.513369
NA DIP0612 Putative DNA polymeraseRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS579083 3120 + 0.538782
NA DIP0336 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS306606 210 - 0.542857
NA DIP1408 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1425515 1710 - 0.491228
NA DIP1947 integraseSubName: Full=Integrase; chromosome CDS1998829 666 - 0.599099
NA DIP1664 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1700446 537 - 0.540037
NA DIP1543 Putative formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1569776 891 - 0.485971
deaD DIP1018 DEAD-box helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS993506 2043 + 0.573177
dinB DIP1588 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS1615746 1356 - 0.532448
dnaA DIP0001 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS19 1659 + 0.535865
dnaB DIP2288 Replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS2384785 1521 - 0.552268
dnaE DIP1580 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS1606336 3561 - 0.506038
dnaG DIP1699 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1736085 1899 - 0.532912
dnaN DIP0002 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS2286 1218 + 0.570608
dnaX DIP0259 DNA polymerase III subunit gamma/tauSubName: Full=DNA polymerase III subunit gamma/tau; EC=2.7.7.7; chromosome CDS221399 2124 + 0.621469
gyrA DIP0009 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS8792 2571 + 0.610657
gyrB DIP0005 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS5379 2058 + 0.568513
ligA DIP1077 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1058711 2034 + 0.514749
mfd DIP0911 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS883472 3795 + 0.552833
nth DIP0304 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS271954 756 + 0.562169
pcrA DIP0835 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS811671 2418 + 0.504963
pknA DIP0054 probable serine/threonine-protein kinaseSubName: Full=Probable serine/threonine-protein kinase; EC=2.7.1.-; chromosome CDS45712 1506 - 0.609562
polA DIP1146 DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1129828 2700 + 0.491481
recA DIP1450 Recombinase ARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1469776 1119 - 0.467382
recF DIP0003 DNA replication and repair proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3542 1194 + 0.542714
recG DIP1136 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1121804 2115 + 0.570213
recN DIP1182 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1179859 1740 + 0.496552
recR DIP0261 recombination proteinRecName: Full=Recombination protein RecR; chromosome CDS223919 657 + 0.590563
rnhB DIP1515 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1538491 690 - 0.498551
ruvA DIP1376 holliday junction DNA-helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1394044 612 - 0.49183
ruvB DIP1375 holliday junction DNA-helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1392938 1089 - 0.500459
ruvC DIP1377 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1394694 492 - 0.526423
ssb1 DIP2290 single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS2387462 582 - 0.609966
ssb2 DIP2216 single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS2307893 516 + 0.54845
tnpA1 DIP0766 transposase ASubName: Full=Transposase A; chromosome CDS742372 303 - 0.485149
tnpA2 DIP1944 transposaseSubName: Full=Transposase; chromosome CDS1998063 795 + 0.611321
tnpA3 DIP1951 transposaseSubName: Full=Transposase; chromosome CDS2001551 795 + 0.611321
topA DIP0327 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS293451 2895 + 0.6
ung DIP1134 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS1119460 669 + 0.572496
uvrA DIP1159 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1149234 2862 + 0.480084
uvrA2 DIP2031 Putative excinuclease ABC subunit A2SubName: Full=Putative excinuclease ABC subunit A2; chromosome CDS2081863 2592 + 0.51196
uvrB DIP1154 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1142204 2046 + 0.477028
uvrC DIP1314 Putative excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1325463 2064 - 0.46657
uvrD DIP0726 Putative DNA helicase IISubName: Full=Putative DNA helicase II; EC=3.6.1.-; chromosome CDS700467 2052 + 0.54191
xerD DIP1186 integrase/recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS1184540 936 + 0.45406
xseA DIP0942 Exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS912814 1242 - 0.559581
xseB DIP0941 Exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS912528 258 - 0.515504