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2024-06-01 21:04:17

Gene list

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COG category: Replication, recombination and repair
Genomic element: chromosome

Number of genes found: 61

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Tropheryma whipplei TW08/27, TW08/27
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA TW242 putative ATP-dependent DNA helicase subunitSubName: Full=Putative ATP-dependent DNA helicase subunit; chromosome CDS264900 2982 + 0.437626
NA TW300 putative DNA-binding/repair enzymeSubName: Full=Putative DNA-binding/repair enzyme; chromosome CDS337674 555 - 0.418018
NA TW315 putative DNA recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS348498 921 + 0.470141
NA TW314 putative DNA processing proteinSubName: Full=Putative DNA processing protein; chromosome CDS347316 1146 + 0.482548
NA TW704 putative exodeoxyribonucleaseSubName: Full=Putative exodeoxyribonuclease; chromosome CDS798257 846 + 0.478723
NA TW783 putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS887009 882 + 0.459184
NA TW386 putative DNA uptake proteinSubName: Full=Putative DNA uptake protein; chromosome CDS420613 582 + 0.408935
NA TW243 putative ATP-dependent DNA helicase subunitSubName: Full=Putative ATP-dependent DNA helicase subunit; chromosome CDS267878 2922 + 0.439425
NA TW394 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS430659 438 + 0.479452
NA TW713 putative DNA polymeraseSubName: Full=Putative DNA polymerase; chromosome CDS806432 1236 - 0.467638
NA TW312 conserved hypothetical proteinRecName: Full=UPF0102 protein TW312; chromosome CDS345350 363 + 0.415978
NA TW165 putative serine/threonine protein kinaseSubName: Full=Putative serine/threonine protein kinase; chromosome CDS203335 1197 + 0.444444
NA TW090 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS88815 2232 + 0.448029
NA TW446 putative TatD-family DNaseSubName: Full=Putative TatD-family DNase; chromosome CDS486396 867 + 0.4406
NA TW130 putative helicase regulatorSubName: Full=Putative helicase regulator; chromosome CDS134760 2073 + 0.485769
NA TW108 putative DNA recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS107600 1050 - 0.479048
NA TW691 conserved large hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS780347 3519 - 0.460642
NA TW656 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS749768 564 - 0.473404
NA TW101 conserved hypothetical protein (putative ATP-binding)SubName: Full=Putative uncharacterized protein; chromosome CDS100840 1572 - 0.454198
NA TW245 putative ATP-dependent DNA helicaseSubName: Full=Putative ATP-dependent DNA helicase; chromosome CDS272079 1758 + 0.466439
NA TW788 putative serine/threonine-protein kinaseSubName: Full=Putative serine/threonine-protein kinase; chromosome CDS892514 1758 + 0.506257
NA TW410 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS447831 1875 + 0.421867
NA TW381 putative secreted proteinSubName: Full=Putative secreted protein; chromosome CDS412536 1209 - 0.419355
NA TW109 putative NUDIX hydrolaseSubName: Full=Putative NUDIX hydrolase; chromosome CDS110016 609 - 0.489327
NA TW389 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS423503 930 + 0.476344
dnaA TW001 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1 1437 + 0.388309
dnaB TW752 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS849132 1326 + 0.46908
dnaE TW252 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS279326 3495 + 0.447783
dnaG TW484 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS522062 1812 - 0.449227
dnaN TW002 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1767 1134 + 0.377425
dnaX TW727 DNA polymerase III subunit gamma/tauSubName: Full=DNA polymerase III subunit gamma/tau; EC=2.7.7.7; chromosome CDS822194 1569 - 0.457616
gyrA1 TW273 DNA gyrase subunit ASubName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS307631 2466 - 0.437551
gyrA1 TW006 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS6438 2460 + 0.492683
gyrB1 TW005 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4485 1950 + 0.475897
gyrB2 TW268 DNA gyrase subunit BSubName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS301377 1989 + 0.459025
hup TW128 DNA-binding protein HU-alphaSubName: Full=DNA-binding protein HU-alpha; chromosome CDS132298 282 + 0.521277
ligA TW354 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS386982 1887 + 0.439322
mfd TW589 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS662858 3747 - 0.430478
nei TW374 endonuclease VIIISubName: Full=Endonuclease VIII; EC=3.2.-.-; chromosome CDS406503 885 + 0.489266
polA TW480 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS517394 1071 - 0.436041
recA TW628 recombinase ARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS715252 1314 - 0.488584
recF TW003 DNA replication and repair protein recFRecName: Full=DNA replication and repair protein RecF; chromosome CDS2890 1092 + 0.389194
recG TW195 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS232840 2022 + 0.472799
recN TW111 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS115156 1638 - 0.450549
recO TW487 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS526096 744 - 0.46371
recR TW726 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS821589 597 - 0.479062
rnhA TW531 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS569929 486 + 0.475309
ruvA TW502 holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS541501 525 - 0.468571
ruvB TW501 holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS540495 996 - 0.482932
ruvC TW503 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS542124 552 - 0.467391
ssb1 TW116 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein 1; Short=SSB 1; chromosome CDS125457 561 - 0.513369
ssb2 TW367 single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein 2; Short=SSB 2; chromosome CDS399273 447 + 0.47651
topA TW715 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS808491 2526 - 0.488124
ung TW179 uracil DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS221086 693 + 0.506494
uvrA TW476 excinuclease ABC subunit ASubName: Full=Excinuclease ABC subunit A; chromosome CDS510167 2847 - 0.425711
uvrB TW477 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS513025 2034 - 0.417896
uvrC TW475 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS508335 1824 - 0.421601
xseA TW665 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS756796 1215 + 0.446091
xseB TW666 probable exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS758059 366 + 0.467213
xthA1 TW756 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS853087 810 + 0.471605
xthA1 TW323 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS355281 840 + 0.496429