Gene list
Applied filters:
COG category: Transcription
Genomic element: chromosome 1
Number of genes found: 31
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Photobacterium profundum, ss9 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | PBPRA0260 | putative met repressor | SubName: Full=Putative met repressor; | chromosome 1 | CDS | 268339 | 318 | - | 0.421384 |
NA | PBPRA0165 | putative LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome 1 | CDS | 169235 | 579 | + | 0.428325 |
NA | PBPRA0028 | Hypothetical flagellar protein | SubName: Full=Hypothetical flagellar protein; | chromosome 1 | CDS | 28830 | 282 | - | 0.41844 |
NA | PBPRA0192 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 198329 | 291 | + | 0.47079 |
NA | PBPRA0190 | putative DNA-directed RNA polymerase, omega subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome 1 | CDS | 196979 | 285 | - | 0.501754 |
NA | PBPRA0051 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 50663 | 699 | + | 0.416309 |
NA | PBPRA0345 | putative DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome 1 | CDS | 344887 | 990 | + | 0.451515 |
BLL3077 | PBPRA0141 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome 1 | CDS | 142627 | 882 | - | 0.44898 |
C4475 | PBPRA0189 | putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase | SubName: Full=Putative guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; | chromosome 1 | CDS | 194849 | 2112 | - | 0.458333 |
MTV005.1 | PBPRA0264 | Putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome 1 | CDS | 273690 | 567 | - | 0.430335 |
OXYR | PBPRA0273 | putative Hydrogen peroxide-inducible genes activator | SubName: Full=Putative Hydrogen peroxide-inducible genes activator; | chromosome 1 | CDS | 286122 | 900 | + | 0.441111 |
PLU4669 | PBPRA0084 | transcriptional activator IlvY [Vibrio cholerae O1 biovar eltor str. N16961] | SubName: Full=Transcriptional activator IlvY [Vibrio cholerae O1 biovar eltor str. N16961]; | chromosome 1 | CDS | 86129 | 870 | - | 0.391954 |
PLU4760 | PBPRA0256 | putative transcriptional repressor, LacI family | SubName: Full=Putative transcriptional repressor, LacI family; | chromosome 1 | CDS | 262733 | 1005 | - | 0.468657 |
PLU4794 | PBPRA0231 | hypothetical transcriptional regulator CpxR | SubName: Full=Hypothetical transcriptional regulator CpxR; | chromosome 1 | CDS | 238387 | 489 | - | 0.451943 |
PSPTO041 | PBPRA0221 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome 1 | CDS | 228275 | 648 | + | 0.416667 |
PSPTO197 | PBPRA0047 | Hypothetical flagellar-specific transcription initiation factor sigma, LafS | RecName: Full=RNA polymerase sigma factor; | chromosome 1 | CDS | 46640 | 756 | + | 0.469577 |
S4077 | PBPRA0187 | putative ATP-dependent DNA helicase RecG | SubName: Full=Putative ATP-dependent DNA helicase RecG; | chromosome 1 | CDS | 191928 | 2094 | - | 0.492837 |
S4284 | PBPRA0155 | putative RNA polymerase sigma-32 factor | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome 1 | CDS | 156677 | 849 | + | 0.424028 |
SF3425 | PBPRA0183 | putative transcription elongation factor GreB | RecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; | chromosome 1 | CDS | 187189 | 471 | - | 0.422505 |
SO2282 | PBPRA0298 | hypothetical transcriptional regulator | SubName: Full=Hypothetical transcriptional regulator; | chromosome 1 | CDS | 314235 | 1401 | - | 0.47252 |
SO3684 | PBPRA0131 | hypothetical transcriptional regulator, TetR family | SubName: Full=Hypothetical transcriptional regulator, TetR family; | chromosome 1 | CDS | 132950 | 600 | - | 0.425 |
SO4326 | PBPRA0090 | hypothetical transcriptional regulator, TetR family | SubName: Full=Hypothetical transcriptional regulator, TetR family; | chromosome 1 | CDS | 93379 | 627 | - | 0.398724 |
STM3504 | PBPRA0182 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 184715 | 2379 | - | 0.474569 |
STM3523 | PBPRA0159 | putative glycerol-3-phosphate repressor protein | SubName: Full=Putative glycerol-3-phosphate repressor protein; | chromosome 1 | CDS | 161204 | 780 | + | 0.457692 |
STM3848 | PBPRA0112 | Putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome 1 | CDS | 115072 | 1017 | - | 0.466077 |
VP0027 | PBPRA0061 | Putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome 1 | CDS | 60065 | 942 | + | 0.442675 |
WAVC | PBPRA0210 | conserved hypothetical protein | RecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; | chromosome 1 | CDS | 217087 | 711 | + | 0.469761 |
Y0067 | PBPRA0232 | putative transcriptional regulator CpxR | SubName: Full=Putative transcriptional regulator CpxR; | chromosome 1 | CDS | 238838 | 246 | - | 0.402439 |
Y3916 | PBPRA0184 | putative transcriptional regulator OmpR | SubName: Full=Putative transcriptional regulator OmpR; | chromosome 1 | CDS | 187956 | 720 | + | 0.465278 |
Y4095 | PBPRA0239 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 244076 | 621 | - | 0.409018 |
Z5065 | PBPRA0200 | putative transcriptional regulator, TetR family | RecName: Full=Nucleoid occlusion factor SlmA; | chromosome 1 | CDS | 208898 | 591 | - | 0.455161 |