Gene list
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COG category: Transcription
Genomic element: chromosome
Number of genes found: 91
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| Thiomicrospira crunogena XCL-2, XCL-2 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tcr_1205 | sigma-54 (RpoN) | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 1317989 | 1503 | - | 0.427811 |
| NA | Tcr_0969 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1047943 | 681 | + | 0.403818 |
| NA | Tcr_0904 | Iron dependent repressor | SubName: Full=Iron (Metal) dependent repressor, DtxR family; | chromosome | CDS | 982146 | 657 | + | 0.43379 |
| NA | Tcr_0862 | GCN5-related N-acetyltransferase | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 939447 | 438 | - | 0.410959 |
| NA | Tcr_2009 | DEAD/DEAH box helicase-like | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 2214284 | 1725 | + | 0.45971 |
| NA | Tcr_1401 | Protein of unknown function DUF193 | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 1513928 | 465 | - | 0.464516 |
| NA | Tcr_2043 | hydrogenase accessory protein HypB | SubName: Full=Hydrogenase nickel incorporation protein hypB; | chromosome | CDS | 2255232 | 762 | - | 0.451444 |
| NA | Tcr_0289 | DNA-directed RNA polymerase | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 337777 | 4227 | + | 0.417081 |
| NA | Tcr_0106 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 136378 | 1365 | + | 0.415385 |
| NA | Tcr_2126 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 2348121 | 849 | + | 0.460542 |
| NA | Tcr_2183 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2406737 | 216 | + | 0.342593 |
| NA | Tcr_0035 | transcriptional regulator, NifA subfamily, Fis Family | SubName: Full=Transcriptional regulator, NifA subfamily, Fis family; | chromosome | CDS | 42971 | 1695 | + | 0.454277 |
| NA | Tcr_1877 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 2052926 | 474 | - | 0.459916 |
| NA | Tcr_0426 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 477893 | 927 | - | 0.421791 |
| NA | Tcr_1418 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 1531804 | 444 | + | 0.376126 |
| NA | Tcr_2002 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2205127 | 906 | - | 0.456954 |
| NA | Tcr_2144 | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | SubName: Full=(P)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; EC=2.7.6.5; | chromosome | CDS | 2364715 | 2160 | + | 0.449074 |
| NA | Tcr_0323 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 361477 | 783 | - | 0.408685 |
| NA | Tcr_0788 | transcriptional regulator, BadM/Rrf2 family | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 862392 | 438 | + | 0.424658 |
| NA | Tcr_2013 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2218774 | 369 | - | 0.390244 |
| NA | Tcr_2078 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 2297237 | 732 | + | 0.394809 |
| NA | Tcr_1827 | Protein of unknown function DUF179 | RecName: Full=UPF0301 protein Tcr_1827; | chromosome | CDS | 2003821 | 567 | + | 0.440917 |
| NA | Tcr_0319 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 358572 | 990 | + | 0.377778 |
| NA | Tcr_1396 | NusB antitermination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 1509930 | 486 | - | 0.421811 |
| NA | Tcr_1911 | response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase | SubName: Full=Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; | chromosome | CDS | 2093280 | 807 | - | 0.421313 |
| NA | Tcr_1122 | NusA antitermination factor | SubName: Full=NusA antitermination factor; | chromosome | CDS | 1210169 | 1488 | + | 0.438844 |
| NA | Tcr_1771 | sigma-24 (FecI-like) | SubName: Full=Sigma-24 (FecI-like); | chromosome | CDS | 1932679 | 525 | - | 0.39619 |
| NA | Tcr_1203 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1316283 | 702 | - | 0.408832 |
| NA | Tcr_0868 | negative regulator of class I heat shock protein | RecName: Full=Heat-inducible transcription repressor hrcA; | chromosome | CDS | 947243 | 1029 | + | 0.435374 |
| NA | Tcr_0786 | transcriptional regulator, BadM/Rrf2 family | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 861124 | 471 | - | 0.377919 |
| NA | Tcr_2174 | parB-like partition proteins | SubName: Full=Chromosome segregation DNA-binding protein; | chromosome | CDS | 2394415 | 870 | - | 0.467816 |
| NA | Tcr_2153 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 2376348 | 2073 | + | 0.478534 |
| NA | Tcr_0425 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 476939 | 945 | - | 0.420106 |
| NA | Tcr_1478 | anti-sigma-28 factor, FlgM | SubName: Full=Anti-sigma-28 factor, FlgM; | chromosome | CDS | 1597763 | 306 | + | 0.392157 |
| NA | Tcr_0541 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 606637 | 693 | + | 0.440115 |
| NA | Tcr_1234 | putative prophage repressor | SubName: Full=S24 family peptidase; | chromosome | CDS | 1350314 | 462 | + | 0.441558 |
| NA | Tcr_1341 | GCN5-related N-acetyltransferase | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1456410 | 459 | + | 0.427015 |
| NA | Tcr_1884 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 2061543 | 621 | + | 0.450886 |
| NA | Tcr_1168 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1270543 | 3480 | - | 0.439655 |
| NA | Tcr_1660 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1813878 | 390 | - | 0.415385 |
| NA | Tcr_1269 | Helicase c2 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1384473 | 1911 | - | 0.430141 |
| NA | Tcr_0734 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 807458 | 702 | + | 0.415954 |
| NA | Tcr_0440 | transcriptional regulator, Fis family | SubName: Full=DNA-binding protein Fis; | chromosome | CDS | 493697 | 264 | - | 0.393939 |
| NA | Tcr_1872 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 2047908 | 375 | + | 0.458667 |
| NA | Tcr_0195 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 229080 | 903 | - | 0.41639 |
| NA | Tcr_1702 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1861441 | 594 | - | 0.452862 |
| NA | Tcr_1806 | sigma 70 (RpoD) | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 1981801 | 1785 | - | 0.454342 |
| NA | Tcr_0779 | DEAD/DEAH box helicase-like | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 853629 | 1338 | - | 0.470105 |
| NA | Tcr_1382 | two component transcriptional regulator, LuxR family | SubName: Full=Two component transcriptional regulator, LuxR family; | chromosome | CDS | 1495687 | 699 | - | 0.420601 |
| NA | Tcr_1310 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1427285 | 552 | - | 0.440217 |
| NA | Tcr_1782 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1947525 | 309 | + | 0.352751 |
| NA | Tcr_2143 | DNA-directed RNA polymerase, omega subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 2364466 | 225 | + | 0.408889 |
| NA | Tcr_0092 | Rhodanese-like | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 119352 | 555 | - | 0.441441 |
| NA | Tcr_1883 | DEAD/DEAH box helicase-like | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 2060218 | 1206 | + | 0.450249 |
| NA | Tcr_1338 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1453904 | 597 | + | 0.427136 |
| NA | Tcr_2123 | conserved hypothetical protein | SubName: Full=DNA-binding protein; | chromosome | CDS | 2345210 | 210 | + | 0.361905 |
| NA | Tcr_1212 | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | SubName: Full=(P)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; EC=2.7.6.5; | chromosome | CDS | 1325801 | 2151 | + | 0.453742 |
| NA | Tcr_0617 | transcriptional regulator, BadM/Rrf2 family | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 692987 | 429 | + | 0.452214 |
| NA | Tcr_0948 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase; | chromosome | CDS | 1022792 | 1407 | - | 0.46624 |
| NA | Tcr_0885 | ROK | SubName: Full=N-acetylglucosamine kinase; EC=2.7.1.59; | chromosome | CDS | 963984 | 906 | + | 0.475717 |
| NA | Tcr_1947 | putative transcriptional acitvator, Baf | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 2134557 | 747 | - | 0.412316 |
| NA | Tcr_0942 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1016371 | 315 | - | 0.434921 |
| NA | Tcr_2185 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2409481 | 900 | + | 0.452222 |
| NA | Tcr_0283 | NusG antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 330715 | 534 | + | 0.391386 |
| NA | Tcr_2188 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 2412682 | 606 | - | 0.445545 |
| NA | Tcr_0852 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 927261 | 954 | + | 0.409853 |
| NA | Tcr_2134 | sigma 32 (RpoH) | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2355751 | 852 | + | 0.424883 |
| NA | Tcr_1789 | putative transcriptional regulator, CopG family | SubName: Full=Transcriptional regulator, CopG family; | chromosome | CDS | 1960093 | 474 | + | 0.436709 |
| NA | Tcr_0288 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 333719 | 4059 | + | 0.413649 |
| NA | Tcr_0205 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator, LuxR family; | chromosome | CDS | 242228 | 618 | - | 0.417476 |
| NA | Tcr_0858 | putative prophage repressor | SubName: Full=UmuD protein. Serine peptidase. MEROPS family S24; | chromosome | CDS | 935064 | 621 | - | 0.463768 |
| NA | Tcr_1555 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1703445 | 957 | - | 0.425287 |
| NA | Tcr_2179 | response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase | SubName: Full=Response regulator receiver modulated metal dependent phosphohydrolase; Flags: Precursor; | chromosome | CDS | 2399518 | 1047 | + | 0.427889 |
| NA | Tcr_0670 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 747470 | 537 | + | 0.43203 |
| NA | Tcr_1490 | Ribonuclease R | chromosome | CDS | 1610663 | 2343 | - | 0.443875 | |
| NA | Tcr_0747 | sigma 28 (Flagella/Sporulation) | RecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; | chromosome | CDS | 818820 | 726 | + | 0.418733 |
| NA | Tcr_2156 | sigma-24 (FecI-like) | SubName: Full=Sigma-24 (FecI-like); | chromosome | CDS | 2379668 | 579 | - | 0.404145 |
| NA | Tcr_0004 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 4046 | 672 | + | 0.447917 |
| NA | Tcr_1057 | cold-shock DNA-binding domain protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 1131749 | 207 | - | 0.405797 |
| NA | Tcr_0515 | GreA/GreB family elongation factor | RecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; | chromosome | CDS | 579589 | 465 | + | 0.421505 |
| NA | Tcr_0126 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 158621 | 1260 | - | 0.446032 |
| NA | Tcr_1862 | cold-shock DNA-binding domain protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 2039336 | 210 | - | 0.419048 |
| NA | Tcr_0518 | GCN5-related N-acetyltransferase | SubName: Full=L-2,4-diaminobutyric acid acetyltransferase; | chromosome | CDS | 581481 | 531 | + | 0.39548 |
| NA | Tcr_0054 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 65434 | 915 | + | 0.349727 |
| NA | Tcr_0880 | GreA/GreB family elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 960971 | 477 | + | 0.385744 |
| NA | Tcr_2155 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2378967 | 705 | - | 0.429787 |
| NA | Tcr_2101 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 2324726 | 570 | - | 0.378947 |
| NA | Tcr_1301 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1418870 | 618 | - | 0.385113 |
| NA | Tcr_1224 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 1342723 | 867 | + | 0.403691 |
| NA | Tcr_0233 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 278513 | 618 | - | 0.31068 |
| NA | Tcr_1015 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase family protein; | chromosome | CDS | 1093814 | 1182 | - | 0.485618 |
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