Gene list
Applied filters:
COG category: Transcription
Genomic element: chromosome
Number of genes found: 247
 | ||||||
| Hide UniProt / TrEMBL protein name | |
View in Fasta format (DNA) | |
View in Fasta format (Protein) | |
|
| ||||||
| Shigella dysenteriae Sd197, Sd197 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SDY_0934 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 883786 | 630 | + | 0.47619 |
| NA | SDY_1922 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1751625 | 663 | - | 0.517345 |
| NA | SDY_1975 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 1793809 | 792 | - | 0.493687 |
| NA | SDY_1872 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1705538 | 600 | + | 0.518333 |
| NA | SDY_0767 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 714683 | 546 | - | 0.412088 |
| NA | SDY_2727 | conserved hypothetical protein | RecName: Full=HTH-type transcriptional regulator IscR; | chromosome | CDS | 2525250 | 489 | - | 0.531697 |
| NA | SDY_1723 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1573185 | 312 | - | 0.432692 |
| NA | SDY_1498 | putative DEOR-type transcriptional regulator | SubName: Full=Putative DEOR-type transcriptional regulator; | chromosome | CDS | 1372787 | 759 | + | 0.422925 |
| NA | SDY_2416 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2215810 | 309 | + | 0.498382 |
| NA | SDY_1957 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1781276 | 438 | - | 0.426941 |
| NA | SDY_0779 | putative toxin | SubName: Full=Putative toxin; | chromosome | CDS | 726290 | 468 | - | 0.525641 |
| NA | SDY_4134 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3868318 | 726 | - | 0.545455 |
| NA | SDY_4646 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4350492 | 264 | - | 0.412879 |
| NA | SDY_1140 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1060087 | 432 | + | 0.49537 |
| NA | SDY_2939 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2719147 | 408 | + | 0.522059 |
| NA | SDY_0506 | putative response regulator | SubName: Full=Putative response regulator; | chromosome | CDS | 490678 | 630 | + | 0.536508 |
| NA | SDY_1925 | repressor protein CI | SubName: Full=Repressor protein CI; | chromosome | CDS | 1753498 | 714 | + | 0.477591 |
| NA | SDY_1735 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1583031 | 1407 | - | 0.508884 |
| NA | SDY_2257 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2054303 | 252 | + | 0.5 |
| NA | SDY_2012 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1822940 | 453 | - | 0.509934 |
| NA | SDY_4311 | putative transcriptional regulator of sorbose uptake and utilization genes | SubName: Full=Putative transcriptional regulator of sorbose uptake and utilization genes; | chromosome | CDS | 4039969 | 948 | + | 0.490506 |
| NA | SDY_1139 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1059650 | 408 | + | 0.485294 |
| NA | SDY_0380 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 366382 | 483 | - | 0.519669 |
| NA | SDY_4626 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4333122 | 348 | + | 0.448276 |
| NA | SDY_4143 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 3875635 | 324 | + | 0.45679 |
| NA | SDY_2559 | sucrose operon repressor | SubName: Full=Sucrose operon repressor; | chromosome | CDS | 2354539 | 996 | - | 0.517068 |
| NA | SDY_2913 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2696379 | 486 | - | 0.454733 |
| NA | SDY_2798 | hypothetical bacteriophage protein | SubName: Full=Hypothetical bacteriophage protein; | chromosome | CDS | 2590988 | 936 | + | 0.53312 |
| NA | SDY_1712 | putative enzyme | SubName: Full=Putative enzyme; | chromosome | CDS | 1564435 | 1911 | - | 0.553114 |
| NA | SDY_0371 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 358474 | 234 | - | 0.42735 |
| NA | SDY_2864 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2649524 | 1335 | - | 0.535581 |
| NA | SDY_1660 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 1523006 | 780 | + | 0.389744 |
| NA | SDY_2433 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2234615 | 654 | + | 0.452599 |
| NA | SDY_1361 | putative DEOR-type transcriptional regulator | SubName: Full=Putative DEOR-type transcriptional regulator; | chromosome | CDS | 1256729 | 750 | - | 0.494667 |
| NA | SDY_3656 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3382863 | 486 | - | 0.460905 |
| NA | SDY_1249 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1153779 | 432 | + | 0.511574 |
| NA | SDY_3705 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3434922 | 702 | + | 0.538462 |
| NA | SDY_1817 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1653970 | 291 | + | 0.439863 |
| NA | SDY_0180 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 184270 | 327 | + | 0.51682 |
| NA | SDY_2857 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2645335 | 300 | + | 0.523333 |
| NA | SDY_4278 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4005684 | 294 | - | 0.510204 |
| NA | SDY_1786 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 1625225 | 543 | - | 0.443831 |
| NA | SDY_2225 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2028694 | 336 | + | 0.520833 |
| NA | SDY_2734 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2531458 | 291 | - | 0.47079 |
| NA | SDY_1758 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1598978 | 1056 | + | 0.484848 |
| NA | SDY_2446 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 2248192 | 411 | - | 0.520681 |
| acrR | SDY_0455 | acrAB operon repressor | SubName: Full=AcrAB operon repressor; | chromosome | CDS | 446937 | 648 | - | 0.453704 |
| adiY | SDY_4097 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 3834162 | 762 | + | 0.412073 |
| arcA | SDY_4662 | negative response regulator of genes in aerobic pathways | SubName: Full=Negative response regulator of genes in aerobic pathways; | chromosome | CDS | 4367170 | 717 | - | 0.511855 |
| argR | SDY_3413 | repressor of arg regulon | RecName: Full=Arginine repressor; | chromosome | CDS | 3168722 | 471 | + | 0.490446 |
| arsR | SDY_3561 | transcriptional repressor of chromosomal ars operon | SubName: Full=Transcriptional repressor of chromosomal ars operon; | chromosome | CDS | 3294834 | 354 | - | 0.511299 |
| ascG | SDY_2911 | ascBF operon repressor | SubName: Full=AscBF operon repressor; | chromosome | CDS | 2692712 | 1014 | - | 0.525641 |
| asnC | SDY_4005 | regulator for asnA, asnC and gidA | SubName: Full=Regulator for asnA, asnC and gidA; | chromosome | CDS | 3739591 | 459 | + | 0.485839 |
| baeR | SDY_2186 | transcriptional response regulatory protein | SubName: Full=Transcriptional response regulatory protein; | chromosome | CDS | 1984338 | 723 | - | 0.536653 |
| birA | SDY_3755 | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor | SubName: Full=Biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; | chromosome | CDS | 3484621 | 966 | - | 0.494824 |
| cbl | SDY_2246 | transcriptional regulator cys regulon | SubName: Full=Transcriptional regulator cys regulon; | chromosome | CDS | 2046621 | 951 | + | 0.476341 |
| cobB | SDY_2030 | putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase | RecName: Full=NAD-dependent protein deacylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; | chromosome | CDS | 1839639 | 822 | - | 0.508516 |
| cpxR | SDY_3834 | transcriptional regulator in 2-component system | SubName: Full=Transcriptional regulator in 2-component system; | chromosome | CDS | 3566576 | 699 | + | 0.519313 |
| creB | SDY_4659 | catabolic regulation response regulator | SubName: Full=Catabolic regulation response regulator; | chromosome | CDS | 4363588 | 690 | + | 0.550725 |
| csiE | SDY_2731 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2528866 | 1302 | + | 0.50768 |
| cspA | SDY_4347 | cold shock protein 7.4 | SubName: Full=Cold shock protein 7.4; | chromosome | CDS | 4073771 | 213 | - | 0.488263 |
| cspC | SDY_1969 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 1791107 | 210 | - | 0.466667 |
| cspD | SDY_2381 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 2184074 | 225 | + | 0.48 |
| cspE | SDY_0546 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 529957 | 210 | + | 0.433333 |
| cspH | SDY_0964 | cold shock-like protein | SubName: Full=Cold shock-like protein; | chromosome | CDS | 912841 | 213 | - | 0.474178 |
| cysB | SDY_1345 | positive transcriptional regulator for cysteine regulon | SubName: Full=Positive transcriptional regulator for cysteine regulon; | chromosome | CDS | 1244395 | 975 | + | 0.483077 |
| cytR | SDY_3803 | regulator for deo operon, udp, cdd, tsx, nupC, and nupG | SubName: Full=Regulator for deo operon, udp, cdd, tsx, nupC, and nupG; | chromosome | CDS | 3542298 | 1026 | + | 0.516569 |
| deaD | SDY_3341 | inducible ATP-independent RNA helicase | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 3096682 | 1941 | - | 0.553323 |
| deoR | SDY_0842 | transcriptional repressor for deo operon, tsx, nupG | SubName: Full=Transcriptional repressor for deo operon, tsx, nupG; | chromosome | CDS | 785273 | 759 | - | 0.500659 |
| dinG | SDY_0800 | probably ATP-dependent helicase | SubName: Full=Probably ATP-dependent helicase; | chromosome | CDS | 747435 | 2151 | - | 0.53696 |
| ebgR | SDY_3259 | regulator of ebg operon | SubName: Full=Regulator of ebg operon; | chromosome | CDS | 3021723 | 984 | + | 0.513211 |
| emrR | SDY_2879 | regulator of plasmid mcrB operon | SubName: Full=Regulator of plasmid mcrB operon; | chromosome | CDS | 2662759 | 531 | + | 0.493409 |
| evgA | SDY_4477 | putative positive transcription regulator | SubName: Full=Putative positive transcription regulator; | chromosome | CDS | 4191566 | 615 | + | 0.396748 |
| exuR | SDY_3281 | negative regulator of exu regulon, exuT, uxaAC, and uxuB | SubName: Full=Negative regulator of exu regulon, exuT, uxaAC, and uxuB; | chromosome | CDS | 3048164 | 792 | + | 0.508838 |
| fadR | SDY_1224 | negative regulator for fad regulon, and positive activator of fabA | RecName: Full=Fatty acid metabolism regulator protein; | chromosome | CDS | 1129699 | 720 | + | 0.513889 |
| fecI | SDY_4299 | probable RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 4029320 | 522 | - | 0.544061 |
| fis | SDY_3438 | site-specific DNA inversion stimulation factor | RecName: Full=DNA-binding protein Fis; | chromosome | CDS | 3195765 | 297 | + | 0.47138 |
| flgM | SDY_2081 | anti-FliA factor | SubName: Full=Anti-FliA factor; | chromosome | CDS | 1891347 | 294 | + | 0.513605 |
| fliA | SDY_1095 | alternative sigma factor 28 | RecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; | chromosome | CDS | 1022538 | 720 | + | 0.543056 |
| fruR | SDY_0110 | transcriptional repressor of fru operon and others | SubName: Full=Transcriptional repressor of fru operon and others; | chromosome | CDS | 108681 | 1005 | + | 0.545274 |
| fucR | SDY_3023 | positive regulator of the fuc operon | SubName: Full=Positive regulator of the fuc operon; | chromosome | CDS | 2796106 | 732 | + | 0.486339 |
| galR | SDY_3054 | repressor of galETK operon | SubName: Full=Repressor of galETK operon; | chromosome | CDS | 2833230 | 1032 | + | 0.527132 |
| galS | SDY_2129 | mgl repressor | SubName: Full=Mgl repressor; | chromosome | CDS | 1930827 | 1041 | + | 0.520653 |
| gatR | SDY_2262 | Galactitol utilization operon repressor | SubName: Full=Galactitol utilization operon repressor; | chromosome | CDS | 2058358 | 780 | - | 0.464103 |
| gcvA | SDY_3026 | positive regulator of gcv operon | SubName: Full=Positive regulator of gcv operon; | chromosome | CDS | 2798388 | 918 | - | 0.490196 |
| glpR | SDY_3652 | repressor of the glp operon | SubName: Full=Repressor of the glp operon; | chromosome | CDS | 3380032 | 759 | + | 0.546772 |
| gntR | SDY_3589 | regulator of gluconate operon | SubName: Full=Regulator of gluconate operon; | chromosome | CDS | 3327560 | 939 | - | 0.545261 |
| greA | SDY_3362 | transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 3119645 | 462 | - | 0.482684 |
| greB | SDY_3670 | transcription elongation factor | RecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; | chromosome | CDS | 3402099 | 477 | - | 0.496855 |
| gutM | SDY_2903 | glucitol operon activator | SubName: Full=Glucitol operon activator; | chromosome | CDS | 2683343 | 360 | + | 0.55 |
| hepA | SDY_0083 | probable ATP-dependent RNA helicase | RecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; | chromosome | CDS | 79390 | 2907 | - | 0.55074 |
| hypB | SDY_2924 | guanine-nucleotide binding protein | SubName: Full=Guanine-nucleotide binding protein; | chromosome | CDS | 2705500 | 873 | + | 0.550974 |
| iciA | SDY_3165 | replication initiation inhibitor | RecName: Full=Chromosome initiation inhibitor; AltName: Full=OriC replication inhibitor; | chromosome | CDS | 2931985 | 894 | - | 0.53915 |
| iclR | SDY_4323 | repressor of aceBA operon | SubName: Full=Repressor of aceBA operon; | chromosome | CDS | 4052666 | 864 | + | 0.52662 |
| ilvY | SDY_3975 | positive regulator for ilvC | SubName: Full=Positive regulator for ilvC; | chromosome | CDS | 3706558 | 960 | + | 0.565625 |
| kdpE | SDY_0629 | regulator of kdp operon | SubName: Full=Regulator of kdp operon; | chromosome | CDS | 590523 | 678 | - | 0.564897 |
| lacI | SDY_0379 | transcriptional repressor of the lac operon | SubName: Full=Transcriptional repressor of the lac operon; | chromosome | CDS | 365263 | 1083 | - | 0.565097 |
| lexA | SDY_4531 | regulator for SOS regulon | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 4238458 | 609 | - | 0.522168 |
| lldR | SDY_4037 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 3774847 | 777 | + | 0.541828 |
| lrhA | SDY_2485 | NADH dehydrogenase transcriptional regulator, LysR family | SubName: Full=NADH dehydrogenase transcriptional regulator, LysR family; | chromosome | CDS | 2285459 | 939 | - | 0.497338 |
| lrp | SDY_2372 | regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | SubName: Full=Regulator for leucine (Or lrp) regulon and high-affinity branched-chain amino acid transport system; | chromosome | CDS | 2173577 | 495 | - | 0.474747 |
| lysR | SDY_3056 | positive regulator for lys | SubName: Full=Positive regulator for lys; | chromosome | CDS | 2835652 | 936 | + | 0.532051 |
| malI | SDY_1841 | repressor of malX and Y genes | SubName: Full=Repressor of malX and Y genes; | chromosome | CDS | 1676800 | 1029 | - | 0.545189 |
| malT | SDY_3658 | positive regulator of mal regulon | RecName: Full=HTH-type transcriptional regulator MalT; AltName: Full=ATP-dependent transcriptional activator MalT; | chromosome | CDS | 3383684 | 2700 | - | 0.53963 |
| marA | SDY_1596 | MarA | SubName: Full=MarA; | chromosome | CDS | 1459540 | 390 | - | 0.451282 |
| marR | SDY_1597 | MarR | SubName: Full=MarR; | chromosome | CDS | 1459943 | 378 | - | 0.494709 |
| metJ | SDY_3773 | repressor of all met genes but metF | RecName: Full=Met repressor; AltName: Full=Met regulon regulatory protein MetJ; | chromosome | CDS | 3502346 | 318 | - | 0.518868 |
| metR | SDY_3915 | regulator for metE and metH | SubName: Full=Regulator for metE and metH; | chromosome | CDS | 3647456 | 954 | + | 0.562893 |
| mfd | SDY_2036 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1846016 | 3447 | + | 0.549463 |
| mlc | SDY_1562 | putative NAGC-like transcriptional regulator | SubName: Full=Putative NAGC-like transcriptional regulator; | chromosome | CDS | 1429104 | 1221 | + | 0.522523 |
| nac | SDY_2245 | nitrogen assimilation control protein | SubName: Full=Nitrogen assimilation control protein; | chromosome | CDS | 2045602 | 918 | + | 0.488017 |
| nagC | SDY_0610 | transcriptional repressor of N-acetylglucosamine operon | SubName: Full=Transcriptional repressor of N-acetylglucosamine operon; | chromosome | CDS | 573608 | 1221 | - | 0.532351 |
| narL | SDY_1275 | NarL | SubName: Full=NarL; | chromosome | CDS | 1177738 | 651 | - | 0.519201 |
| narP | SDY_0885 | nitrate/nitrite response regulator | SubName: Full=Nitrate/nitrite response regulator; | chromosome | CDS | 832813 | 648 | - | 0.521605 |
| nhaR | SDY_0019 | transcriptional activator of nhaA | SubName: Full=Transcriptional activator of nhaA; | chromosome | CDS | 18131 | 906 | + | 0.475717 |
| nlp | SDY_3369 | regulatory factor of maltose metabolism | SubName: Full=Regulatory factor of maltose metabolism; | chromosome | CDS | 3126167 | 279 | + | 0.494624 |
| nusA | SDY_3348 | transcription pausing | SubName: Full=Transcription pausing; | chromosome | CDS | 3106750 | 1488 | - | 0.52621 |
| nusB | SDY_0318 | NusB | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 308353 | 420 | - | 0.530952 |
| nusG | SDY_3746 | component in transcription antitermination | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 3480380 | 546 | - | 0.516484 |
| ompR | SDY_3671 | response regulator affecting transcription of ompC and ompF | SubName: Full=Response regulator affecting transcription of ompC and ompF; | chromosome | CDS | 3402803 | 720 | + | 0.551389 |
| oxyR | SDY_3796 | OxyR | SubName: Full=OxyR; | chromosome | CDS | 3532501 | 918 | + | 0.555556 |
| pdhR | SDY_0143 | transcriptional regulator for pyruvate dehydrogenase complex | SubName: Full=Transcriptional regulator for pyruvate dehydrogenase complex; | chromosome | CDS | 142624 | 765 | + | 0.55817 |
| phnF | SDY_4114 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3850698 | 726 | + | 0.615702 |
| phnO | SDY_4123 | putative regulator, phn operon | SubName: Full=Putative regulator, phn operon; | chromosome | CDS | 3857485 | 435 | + | 0.57931 |
| phoB | SDY_0338 | positive response regulator for pho regulon | SubName: Full=Positive response regulator for pho regulon; | chromosome | CDS | 326751 | 690 | - | 0.542029 |
| phoP | SDY_2022 | transcriptional regulatory protein | SubName: Full=Transcriptional regulatory protein; | chromosome | CDS | 1830819 | 672 | + | 0.471726 |
| pspA | SDY_1940 | phage shock protein | SubName: Full=Phage shock protein; | chromosome | CDS | 1763102 | 669 | - | 0.493274 |
| pspC | SDY_1938 | phage shock protein | SubName: Full=Phage shock protein; | chromosome | CDS | 1762465 | 360 | - | 0.494444 |
| pspF | SDY_1941 | psp operon transcriptional activator | SubName: Full=Psp operon transcriptional activator; | chromosome | CDS | 1763922 | 993 | + | 0.513595 |
| purR | SDY_1884 | PurR | RecName: Full=HTH-type transcriptional repressor PurR; AltName: Full=Pur regulon repressor; AltName: Full=Purine nucleotide synthesis repressor; | chromosome | CDS | 1718130 | 1026 | + | 0.535088 |
| qseA | SDY_3419 | quorum sensing regulator A | SubName: Full=Quorum sensing regulator A; | chromosome | CDS | 3173539 | 930 | + | 0.529032 |
| rbsR | SDY_3994 | regulator for rbs operon | SubName: Full=Regulator for rbs operon; | chromosome | CDS | 3726641 | 951 | - | 0.505783 |
| rcsB | SDY_0857 | positive response regulator for colanic capsule biosynthesis | SubName: Full=Positive response regulator for colanic capsule biosynthesis; | chromosome | CDS | 805406 | 651 | - | 0.474654 |
| recG | SDY_4084 | DNA helicase | SubName: Full=DNA helicase; | chromosome | CDS | 3818732 | 2082 | + | 0.568684 |
| relA | SDY_3001 | (p)ppGpp synthetase I | SubName: Full=(P)ppGpp synthetase I; | chromosome | CDS | 2767392 | 2235 | - | 0.536465 |
| rfaH | SDY_3903 | transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin | RecName: Full=Transcription antitermination protein RfaH; | chromosome | CDS | 3635453 | 489 | + | 0.494888 |
| rhaR | SDY_3840 | positive regulator for rhaRS operon | RecName: Full=HTH-type transcriptional activator RhaR; AltName: Full=L-rhamnose operon transcriptional activator RhaR; | chromosome | CDS | 3572717 | 939 | - | 0.492013 |
| rhaS | SDY_3841 | positive regulator for rhaBAD operon | RecName: Full=HTH-type transcriptional activator RhaS; AltName: Full=L-rhamnose operon regulatory protein RhaS; | chromosome | CDS | 3573639 | 837 | - | 0.512545 |
| rhlB | SDY_3969 | putative ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 3697522 | 1266 | + | 0.518957 |
| rhlE | SDY_0806 | putative ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 752216 | 1365 | - | 0.561905 |
| rho | SDY_3966 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 3695476 | 1260 | - | 0.502381 |
| rnb | SDY_1366 | RNase II | RecName: Full=Exoribonuclease 2; EC=3.1.13.1; AltName: Full=Exoribonuclease II; Short=RNase II; Short=Ribonuclease II; | chromosome | CDS | 1260887 | 1935 | - | 0.528165 |
| rnc | SDY_2808 | RNase III, ds RNA | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 2598223 | 681 | - | 0.506608 |
| rob | SDY_4657 | right origin-binding protein | SubName: Full=Right origin-binding protein; | chromosome | CDS | 4362022 | 870 | - | 0.529885 |
| rpoA | SDY_3471 | RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 3222478 | 990 | - | 0.521212 |
| rpoB | SDY_3741 | RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 3473406 | 4029 | - | 0.52693 |
| rpoC | SDY_3740 | RNA polymerase, beta prime subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 3469106 | 4224 | - | 0.536695 |
| rpoD | SDY_3251 | RNA polymerase, sigma(70) factor | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 3013351 | 1842 | + | 0.529316 |
| rpoE | SDY_2814 | RNA polymerase | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2604278 | 576 | - | 0.486111 |
| rpoH | SDY_3612 | RNA polymerase, sigma(32) factor | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 3348614 | 855 | - | 0.538012 |
| rpoN | SDY_3383 | RNA polymerase, sigma(54 or 60) factor | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 3135966 | 1434 | + | 0.525105 |
| rpoS | SDY_2940 | RNA polymerase, sigma S factor | RecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; | chromosome | CDS | 2719674 | 993 | - | 0.517623 |
| rpoZ | SDY_4081 | DNA-directed RNA polymerase omega chain | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 3815628 | 276 | + | 0.532609 |
| rstA | SDY_1824 | response transcriptional regulatory protein | SubName: Full=Response transcriptional regulatory protein; | chromosome | CDS | 1658219 | 717 | + | 0.492329 |
| slyA | SDY_1865 | transcriptional regulator for cryptic hemolysin | RecName: Full=Transcriptional regulator SlyA; | chromosome | CDS | 1699891 | 441 | - | 0.47619 |
| soxR | SDY_4504 | redox-sensing activator of soxS | SubName: Full=Redox-sensing activator of soxS; | chromosome | CDS | 4216815 | 465 | - | 0.522581 |
| soxS | SDY_4505 | regulation of superoxide response regulon | SubName: Full=Regulation of superoxide response regulon; | chromosome | CDS | 4217365 | 324 | + | 0.518519 |
| spoT | SDY_4082 | (p)ppGpp synthetase II | SubName: Full=(P)ppGpp synthetase II; | chromosome | CDS | 3815922 | 2109 | + | 0.539592 |
| srlR | SDY_2904 | regulator for glucitol operon | SubName: Full=Regulator for glucitol operon; | chromosome | CDS | 2683769 | 774 | + | 0.481912 |
| srmB | SDY_2817 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; | chromosome | CDS | 2607737 | 1335 | + | 0.545318 |
| tdcA | SDY_3310 | transcriptional activator of tdc operon | SubName: Full=Transcriptional activator of tdc operon; | chromosome | CDS | 3071318 | 939 | - | 0.421725 |
| torR | SDY_0969 | response transcriptional regulator for torA | SubName: Full=Response transcriptional regulator for torA; | chromosome | CDS | 918513 | 693 | - | 0.526696 |
| treR | SDY_4260 | repressor of treA,B,C | SubName: Full=Repressor of treA,B,C; | chromosome | CDS | 3991860 | 948 | - | 0.540084 |
| trpR | SDY_4654 | regulator for trp operon and aroH | RecName: Full=Trp operon repressor; | chromosome | CDS | 4360445 | 327 | + | 0.544343 |
| ttk | SDY_4071 | putative transcriptional regulator | RecName: Full=Nucleoid occlusion factor SlmA; | chromosome | CDS | 3806721 | 639 | + | 0.532081 |
| tyrR | SDY_1401 | TyrR | SubName: Full=TyrR; | chromosome | CDS | 1293973 | 1542 | + | 0.516861 |
| uhpA | SDY_4150 | response regulator, positive activator of uhpT transcription | SubName: Full=Response regulator, positive activator of uhpT transcription; | chromosome | CDS | 3884216 | 591 | - | 0.571912 |
| uidR | SDY_1837 | repressor for uid operon | SubName: Full=Repressor for uid operon; | chromosome | CDS | 1673679 | 591 | - | 0.505922 |
| umuD | SDY_1220 | UmuD | SubName: Full=UmuD; | chromosome | CDS | 1125536 | 420 | + | 0.480952 |
| uvrY | SDY_1104 | putative 2-component transcriptional regulator | SubName: Full=Putative 2-component transcriptional regulator; | chromosome | CDS | 1029742 | 657 | + | 0.500761 |
| vacB | SDY_4410 | putative enzyme | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 4124744 | 2472 | - | 0.547735 |
| waaP | SDY_4060 | putative LPS biosynthesis enzyme | SubName: Full=Putative LPS biosynthesis enzyme; | chromosome | CDS | 3797427 | 807 | - | 0.477076 |
| xylR | SDY_3710 | putative regulator of xyl operon | SubName: Full=Putative regulator of xyl operon; | chromosome | CDS | 3441092 | 1179 | - | 0.487701 |
| yaeG | SDY_0179 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 183466 | 801 | + | 0.534332 |
| yaeO | SDY_0207 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 214707 | 261 | - | 0.471264 |
| yafC | SDY_0227 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 230927 | 915 | - | 0.489617 |
| yajF | SDY_0345 | possible NAGC-like transcriptional regulator | SubName: Full=Possible NAGC-like transcriptional regulator; | chromosome | CDS | 335631 | 1047 | - | 0.541547 |
| ybaD | SDY_0321 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 310458 | 450 | - | 0.508889 |
| ybaO | SDY_0384 | putative LRP-like transcriptional regulator | SubName: Full=Putative LRP-like transcriptional regulator; | chromosome | CDS | 368576 | 546 | + | 0.489011 |
| ybbI | SDY_0415 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 397196 | 408 | - | 0.563725 |
| ybbS | SDY_0398 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 382615 | 927 | + | 0.518878 |
| ybbU | SDY_0396 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 381011 | 816 | - | 0.523284 |
| ybdM | SDY_0533 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 520080 | 504 | - | 0.460317 |
| ybeF | SDY_0551 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 533091 | 936 | - | 0.474359 |
| ybiH | SDY_0807 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 753797 | 684 | + | 0.54386 |
| ycdC | SDY_0988 | putative tet operon regulator | SubName: Full=Putative tet operon regulator; | chromosome | CDS | 936212 | 639 | + | 0.510172 |
| ycfQ | SDY_2039 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1851069 | 711 | + | 0.500703 |
| ycfX | SDY_2031 | putative NAGC-like transcriptional regulator | RecName: Full=N-acetyl-D-glucosamine kinase; EC=2.7.1.59; AltName: Full=GlcNAc kinase; | chromosome | CDS | 1840476 | 912 | - | 0.526316 |
| ycjC | SDY_1945 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1769266 | 558 | - | 0.510753 |
| ycjZ | SDY_1408 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1300229 | 900 | + | 0.461111 |
| ydcN | SDY_1742 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1587866 | 537 | - | 0.49162 |
| ydfH | SDY_1585 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1449683 | 687 | - | 0.500728 |
| ydhB | SDY_1885 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1719152 | 933 | - | 0.538049 |
| yeaM | SDY_1688 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 1545385 | 822 | - | 0.501217 |
| yeaT | SDY_1700 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1553027 | 945 | - | 0.518519 |
| yedW | SDY_1039 | putative 2-component transcriptional regulator | SubName: Full=Putative 2-component transcriptional regulator; | chromosome | CDS | 981021 | 699 | + | 0.430615 |
| yeeY | SDY_2224 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 2028100 | 543 | + | 0.510129 |
| yegW | SDY_2274 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2069970 | 747 | - | 0.51004 |
| yehT | SDY_2164 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1963682 | 735 | + | 0.497959 |
| yehV | SDY_2162 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1961062 | 732 | - | 0.535519 |
| yeiE | SDY_2109 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1912628 | 882 | + | 0.539683 |
| yejH | SDY_0895 | putative ATP-dependent helicase | SubName: Full=Putative ATP-dependent helicase; | chromosome | CDS | 841918 | 1761 | - | 0.532084 |
| yfeD | SDY_2597 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2394632 | 393 | + | 0.46056 |
| yfeG | SDY_2635 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 2427222 | 1053 | - | 0.533713 |
| yfeT | SDY_2623 | conserved hypothetical protein | RecName: Full=HTH-type transcriptional regulator MurR; AltName: Full=MurPQ operon repressor; | chromosome | CDS | 2417253 | 858 | - | 0.516317 |
| yfhH | SDY_2751 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2552568 | 921 | + | 0.511401 |
| yfiE | SDY_2818 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 2609104 | 927 | - | 0.482201 |
| ygaA | SDY_2906 | putative 2-component transcriptional regulator | RecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; | chromosome | CDS | 2685497 | 1590 | - | 0.561006 |
| ygaE | SDY_2854 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2643780 | 681 | + | 0.530103 |
| ygcP | SDY_2970 | putative anti-terminator regulatory protein | SubName: Full=Putative anti-terminator regulatory protein; | chromosome | CDS | 2743850 | 576 | + | 0.467014 |
| yggD | SDY_3147 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2916763 | 510 | + | 0.482353 |
| ygiX | SDY_3214 | putative 2-component transcriptional regulator | SubName: Full=Putative 2-component transcriptional regulator; | chromosome | CDS | 2976465 | 660 | - | 0.516667 |
| ygjM | SDY_3266 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3034056 | 417 | - | 0.491607 |
| yhaJ | SDY_3297 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 3057722 | 906 | - | 0.554084 |
| yhcI | SDY_3397 | putative NAGC-like transcriptional regulator | RecName: Full=N-acetylmannosamine kinase; EC=2.7.1.60; AltName: Full=ManNAc kinase; AltName: Full=N-acetyl-D-mannosamine kinase; | chromosome | CDS | 3153696 | 909 | - | 0.586359 |
| yhcK | SDY_3401 | putative FADA-type transcriptional regulator | RecName: Full=Transcriptional regulator NanR; | chromosome | CDS | 3157991 | 792 | - | 0.527778 |
| yhcO | SDY_3415 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3169876 | 273 | - | 0.43956 |
| yhdM | SDY_3468 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3221143 | 426 | - | 0.497653 |
| yhgF | SDY_3669 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3399681 | 2223 | - | 0.569501 |
| yhhG | SDY_3636 | conserved hypothetical protein | RecName: Full=Nickel-responsive regulator; | chromosome | CDS | 3369981 | 402 | + | 0.557214 |
| yhiE | SDY_3539 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3276325 | 528 | - | 0.327652 |
| yhiX | SDY_3533 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 3268639 | 825 | + | 0.403636 |
| yhjC | SDY_4541 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 4247198 | 876 | + | 0.541096 |
| yiaG | SDY_4348 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4074264 | 291 | - | 0.436426 |
| yidP | SDY_4170 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3903761 | 717 | + | 0.518828 |
| yidZ | SDY_4202 | putative transcriptional regulator LYSR-type | RecName: Full=HTH-type transcriptional regulator YidZ; | chromosome | CDS | 3932298 | 960 | - | 0.522917 |
| yieP | SDY_3992 | yieP gene product | SubName: Full=YieP gene product; | chromosome | CDS | 3724491 | 693 | + | 0.487734 |
| yifDA | SDY_3985 | Transcription regulator | RecName: Full=HTH-type transcriptional regulator HdfR; AltName: Full=H-NS-dependent flhDC regulator; | chromosome | CDS | 3717861 | 840 | + | 0.484524 |
| yiiD | SDY_3855 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; EC=2.3.1.18; | chromosome | CDS | 3587919 | 990 | - | 0.546465 |
| yijC | SDY_3765 | conserved hypothetical protein | RecName: Full=HTH-type transcriptional repressor FabR; | chromosome | CDS | 3496635 | 705 | - | 0.524823 |
| yijO | SDY_3789 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 3521666 | 852 | - | 0.528169 |
| yjaB | SDY_4333 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4063007 | 444 | + | 0.536036 |
| yjaE | SDY_3731 | putative transcriptional regulator | RecName: Full=Regulator of sigma D; | chromosome | CDS | 3461096 | 477 | + | 0.492662 |
| yjdC | SDY_4440 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4153629 | 519 | - | 0.514451 |
| yjdG | SDY_4237 | putative 2-component transcriptional regulator | RecName: Full=Transcriptional regulatory protein; | chromosome | CDS | 3969054 | 720 | - | 0.495833 |
| yjeB | SDY_4411 | conserved hypothetical protein | RecName: Full=HTH-type transcriptional repressor NsrR; | chromosome | CDS | 4127212 | 426 | - | 0.485915 |
| yjfQ | SDY_4360 | putative DEOR-type transcriptional regulator | RecName: Full=HTH-type transcriptional regulator UlaR; | chromosome | CDS | 4085288 | 756 | - | 0.506614 |
| yjgJ | SDY_4269 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4000023 | 255 | + | 0.494118 |
| yjiR | SDY_4601 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 4311310 | 1413 | - | 0.546355 |
| yneJ | SDY_1633 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1493154 | 882 | + | 0.535147 |
| ynfL | SDY_1561 | putative transcriptional regulator LYSR-type | SubName: Full=Putative transcriptional regulator LYSR-type; | chromosome | CDS | 1428076 | 894 | + | 0.520134 |
| yphH | SDY_2740 | putative NAGC-like transcriptional regulator | SubName: Full=Putative NAGC-like transcriptional regulator; | chromosome | CDS | 2536864 | 1200 | + | 0.505833 |
| yqgE | SDY_3124 | conserved hypothetical protein | RecName: Full=UPF0301 protein YqgE; | chromosome | CDS | 2896173 | 636 | - | 0.507862 |
| yqhC | SDY_3062 | putative ARAC-type regulatory protein | SubName: Full=Putative ARAC-type regulatory protein; | chromosome | CDS | 2841820 | 1128 | + | 0.498227 |
| yqjI | SDY_3255 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3017083 | 624 | + | 0.533654 |
| yrbA | SDY_3371 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3127807 | 270 | - | 0.5 |
| ytfH | SDY_4381 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4102580 | 471 | + | 0.52017 |
|
Beutenbergstraße 11 D-07745 Jena • Germany |
Phone: +49 3641 65-6000 Fax: +49 3641 65-6351 |
E-mail: info@leibniz-fli.de www.leibniz-fli.de |
Data Privacy Imprint |
|