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2024-06-01 22:51:43

Gene list

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COG category: Transcription
Genomic element: chromosome

Number of genes found: 165

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Clostridium tetani E88, Massachusetts
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA CTC00630 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS649700 978 + 0.381391
NA CTC00639 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS658267 984 + 0.34248
NA CTC00597 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS621634 705 + 0.286525
NA CTC00618 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS640869 507 - 0.291913
NA CTC00704 conserved proteinSubName: Full=Conserved protein; chromosome CDS726473 990 + 0.238384
NA CTC00610 accessory gene regulator protein ASubName: Full=Accessory gene regulator protein A; chromosome CDS635981 336 + 0.199405
NA CTC00608 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS632753 567 - 0.250441
NA CTC00657 DNA/RNA helicaseSubName: Full=DNA/RNA helicase; chromosome CDS673859 2493 + 0.251504
NA CTC00707 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS728778 1704 + 0.286385
NA CTC00643 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome CDS662958 519 + 0.287091
NA CTC00665 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS683258 597 + 0.242881
NA CTC00848 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS900528 693 + 0.27417
NA CTC00684 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS701022 1446 + 0.278008
NA CTC00805 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS849627 702 + 0.277778
CTC00072 signal-transduction and transcriptional-control proteinSubName: Full=Signal-transduction and transcriptional-control protein; chromosome CDS17824 1758 - 0.274744
CTC00101 stage 0 sporulation protein JSubName: Full=Stage 0 sporulation protein J; chromosome CDS59273 816 + 0.258578
CTC00109 conserved proteinSubName: Full=Conserved protein; chromosome CDS66688 318 + 0.283019
CTC00144 acetyltransferaseSubName: Full=Acetyltransferase; EC=2.3.1.-; chromosome CDS102883 468 + 0.294872
CTC00153 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS110388 882 - 0.269841
CTC00163 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS118508 717 - 0.27894
CTC00173 predicted transcriptional regulatorSubName: Full=Predicted transcriptional regulator; chromosome CDS128258 660 + 0.239394
CTC00189 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS144984 741 + 0.304993
CTC00194 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS149078 3093 + 0.293243
CTC00196 stage V sporulation protein TSubName: Full=Stage V sporulation protein T; chromosome CDS153345 552 + 0.315217
CTC00201 stage II sporulation protein ESubName: Full=Stage II sporulation protein E; EC=3.1.3.16; chromosome CDS160179 2397 + 0.277013
CTC00207 putative transcriptional regulatorRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS167196 789 + 0.325729
CTC00216 regulatory protein, sir2 familyRecName: Full=NAD-dependent protein deacetylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; chromosome CDS181997 744 + 0.293011
CTC00230 transcriptional repressorSubName: Full=Transcriptional repressor; chromosome CDS197483 954 + 0.301887
CTC00263 predicted catabolite control protein ASubName: Full=Predicted catabolite control protein A; chromosome CDS234852 999 + 0.278278
CTC00273 spore coat proteinSubName: Full=Spore coat protein; chromosome CDS249564 1014 + 0.282051
CTC00277 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS254876 1953 + 0.258065
CTC00296 transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS279777 1500 + 0.302
CTC00330 transcription accessory proteinSubName: Full=Transcription accessory protein; chromosome CDS315916 2157 + 0.303663
CTC00377 putative central glycolytic genes regulatorSubName: Full=Putative central glycolytic genes regulator; chromosome CDS366471 1029 + 0.289602
CTC00384 exoribonuclease IIRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS376266 2127 + 0.294311
CTC00392 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS385961 696 + 0.268678
CTC00399 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS392204 891 - 0.289562
CTC00424 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS420325 447 + 0.284116
CTC00452 iron-dependent transcriptional repressorSubName: Full=Iron-dependent transcriptional repressor; chromosome CDS450561 483 + 0.258799
CTC00480 conserved proteinSubName: Full=Conserved protein; chromosome CDS485612 528 + 0.293561
CTC00483 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS488995 456 + 0.263158
CTC00532 conserved proteinSubName: Full=Conserved protein; chromosome CDS544754 993 + 0.240685
CTC00553 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS573257 591 + 0.296108
CTC00556 signal-transduction and transcriptional-control proteinSubName: Full=Signal-transduction and transcriptional-control protein; chromosome CDS574841 1731 - 0.275563
CTC00575 conserved protein (RRF2 family protein)SubName: Full=Conserved protein (RRF2 family protein); chromosome CDS596860 417 + 0.282974
CTC00872 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS926067 687 + 0.275109
CTC00904 ribose operon repressorSubName: Full=Ribose operon repressor; chromosome CDS957857 1032 + 0.306202
CTC00913 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS966686 1005 + 0.232836
CTC00922 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS979108 381 + 0.291339
CTC00943 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1006326 966 + 0.295031
CTC00971 transcriptional regulator, putative pyruvate dehydrogenase complex repressorSubName: Full=Transcriptional regulator, putative pyruvate dehydrogenase complex repressor; chromosome CDS1037992 696 + 0.29023
CTC01049 RRF2 protein familySubName: Full=RRF2 protein family; chromosome CDS1118697 435 + 0.310345
CTC01066 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS1137516 549 + 0.284153
CTC01070 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS1140732 453 - 0.298013
CTC01082 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1150270 312 + 0.307692
CTC01097 conserved proteinSubName: Full=Conserved protein; chromosome CDS1164712 465 + 0.329032
CTC01126 RNA polymerase sigma-E factorRecName: Full=RNA polymerase sigma factor; chromosome CDS1192207 786 + 0.260814
CTC01128 RNA polymerase sigma-G factorRecName: Full=RNA polymerase sigma factor; chromosome CDS1193354 486 + 0.3107
CTC01129 4-hydroxybenzoate octaprenyltransferaseRecName: Full=Transcriptional repressor NrdR; chromosome CDS1194289 474 + 0.293249
CTC01130 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1195145 699 + 0.288984
CTC01177 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1256470 891 - 0.272727
CTC01188 acetyltransferaseSubName: Full=Acetyltransferase; EC=2.3.1.-; chromosome CDS1270573 498 - 0.295181
CTC01212 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1298852 912 + 0.253289
CTC01243 ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1331154 708 + 0.266949
CTC01244 oxygen-independent coproporphyrinogen III oxidaseSubName: Full=Oxygen-independent coproporphyrinogen III oxidase; EC=1.-.-.-; chromosome CDS1331854 1056 + 0.286932
CTC01273 N utilization substance protein ASubName: Full=N utilization substance protein A; chromosome CDS1365613 1086 + 0.301105
CTC01344 RRF2 family proteinSubName: Full=RRF2 family protein; chromosome CDS1448369 447 - 0.257271
CTC01368 mitochondrial ATP-dependent RNA helicase suv3 precursorSubName: Full=Mitochondrial ATP-dependent RNA helicase suv3; chromosome CDS1474665 1782 - 0.275533
CTC01391 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1503259 771 + 0.255512
CTC01411 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1523253 990 - 0.29596
CTC01421 transcriptional regulatory component of sensory transduction systemSubName: Full=Transcriptional regulatory component of sensory transduction system; chromosome CDS1533553 693 - 0.290043
CTC01432 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1546799 888 + 0.322072
CTC01433 putative RNA polymerase sigma factorSubName: Full=Putative RNA polymerase sigma factor; chromosome CDS1547947 561 + 0.233512
CTC01439 putative transcriptional regulatory proteinSubName: Full=Putative transcriptional regulatory protein; chromosome CDS1553694 708 + 0.261299
CTC01452 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1568461 843 - 0.288256
CTC01482 transcriptional activator proteinSubName: Full=Transcriptional activator protein; chromosome CDS1605838 669 - 0.351271
CTC01490 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1617147 696 - 0.288793
CTC01499 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1625990 1446 - 0.297372
CTC01523 transcriptional regulatory proteinRecName: Full=Transcriptional regulatory protein; chromosome CDS1649283 702 - 0.264957
CTC01528 conserved proteinRecName: Full=Segregation and condensation protein B; chromosome CDS1654115 570 - 0.301754
CTC01560 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1685300 765 - 0.249673
CTC01566 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1694789 483 - 0.293996
CTC01572 arginine repressorRecName: Full=Arginine repressor; chromosome CDS1700507 462 - 0.296537
CTC01581 N utilization substance protein BRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS1709091 462 - 0.274892
CTC01606 fibronectin/fibrinogen-binding proteinSubName: Full=Fibronectin/fibrinogen-binding protein; chromosome CDS1726181 1734 + 0.256055
CTC01641 putative transcriptional regulatory proteinSubName: Full=Putative transcriptional regulatory protein; chromosome CDS1758620 1218 - 0.283251
CTC01695 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1804930 804 - 0.268657
CTC01759 glycerol uptake operon antiterminator regulatory proteinSubName: Full=Glycerol uptake operon antiterminator regulatory protein; chromosome CDS1871307 573 - 0.291449
CTC01786 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS1898736 564 - 0.260638
CTC01788 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS1900875 639 - 0.262911
CTC01790 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS1902955 528 - 0.253788
CTC01805 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS1914787 723 - 0.275242
CTC01817 RNA polymerase sigma factorSubName: Full=RNA polymerase sigma factor; chromosome CDS1929460 582 - 0.242268
CTC01819 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1931708 480 - 0.26875
CTC01842 putative regulator of efflux transporterSubName: Full=Putative regulator of efflux transporter; chromosome CDS1954847 828 - 0.2343
CTC01850 SWF/SNF family helicaseSubName: Full=SWF/SNF family helicase; chromosome CDS1963926 3282 - 0.260207
CTC01854 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1970578 558 + 0.250896
CTC01856 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS1973130 1161 + 0.282515
CTC01890 IAA acetyltransferaseSubName: Full=IAA acetyltransferase; EC=2.3.1.-; chromosome CDS2010371 381 - 0.2021
CTC01906 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS2027523 708 - 0.340395
CTC01910 DNA repair helicase rad25SubName: Full=DNA repair helicase rad25; chromosome CDS2032848 2982 - 0.263246
CTC01919 regulatory component of sensory transduction systemSubName: Full=Regulatory component of sensory transduction system; chromosome CDS2047528 687 - 0.483261
CTC01979 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS2105016 768 + 0.252604
CTC01999 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS2128461 1575 + 0.292064
CTC02016 conserved proteinSubName: Full=Conserved protein; chromosome CDS2147379 555 - 0.252252
CTC02150 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS2279470 411 + 0.238443
CTC02156 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS2285554 786 - 0.293893
CTC02184 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS2310305 1113 + 0.290207
CTC02199 putative GTP pyrophosphokinaseSubName: Full=Putative GTP pyrophosphokinase; chromosome CDS2322360 2196 - 0.28643
CTC02220 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS2338040 990 - 0.256566
CTC02221 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS2339144 306 - 0.248366
CTC02246 RNA polymerase sigma-F factorRecName: Full=RNA polymerase sigma factor; chromosome CDS2366980 768 - 0.290365
CTC02299 conserved proteinSubName: Full=Conserved protein; chromosome CDS2423784 540 + 0.235185
CTC02346 catabolite control proteinSubName: Full=Catabolite control protein; chromosome CDS2487019 999 - 0.274274
CTC02366 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2505367 348 - 0.229885
CTC02406 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2546081 450 - 0.237778
CTC02471 putative transcription regulatorSubName: Full=Putative transcription regulator; chromosome CDS2624638 594 - 0.277778
CTC02492 cytosolic protein containing cbs domainsSubName: Full=Cytosolic protein containing cbs domains; chromosome CDS2647056 1347 - 0.267261
CTC02531 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS2688513 1560 - 0.262179
CTC02569 transcriptional regulator, putative regular for glutamate degradationSubName: Full=Transcriptional regulator, putative regular for glutamate degradation; chromosome CDS2726198 975 - 0.277949
CTC02578 DNA-directed RNA polymerase alpha chainRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS2732872 948 - 0.303797
CTC02608 DNA-directed RNA polymerase beta chainRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2753364 3453 - 0.338836
CTC02609 DNA-directed RNA polymerase beta chainRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2756794 3711 - 0.330908
CTC02617 RNA polymerase sigma-H factorSubName: Full=RNA polymerase sigma-H factor; chromosome CDS2765774 663 - 0.313726
asnC regulatory protein asnCSubName: Full=Regulatory protein asnC; chromosome CDS588005 483 - 0.298137
codY codY proteinRecName: Full=GTP-sensing transcriptional pleiotropic repressor CodY; chromosome CDS1350208 777 + 0.306306
ctsR transcriptional regulator ctsRSubName: Full=Transcriptional regulator ctsR; chromosome CDS2783742 459 - 0.265795
deoR transcriptional regulator, deoR familySubName: Full=Transcriptional regulator, deoR family; chromosome CDS1250241 648 + 0.25463
fliA RNA polymerase sigma factor for flagellar operon fliARecName: Full=RNA polymerase sigma factor; chromosome CDS1771715 729 - 0.289438
gntR transcriptional regulator, gntR familySubName: Full=Transcriptional regulator, gntR family; chromosome CDS1798435 366 - 0.265027
gntR transcriptional regulator, gntR familySubName: Full=Transcriptional regulator, gntR family; chromosome CDS2622441 666 - 0.276276
gntR transcriptional regulator, gntR familySubName: Full=Transcriptional regulator, gntR family; chromosome CDS2111145 381 + 0.275591
gntR CTC00804 transcriptional regulator, gntR familySubName: Full=Transcriptional regulator, gntR family; chromosome CDS849091 366 - 0.259563
gntR CTC00820 transcriptional regulator, gntR familySubName: Full=Transcriptional regulator, gntR family; chromosome CDS868861 705 + 0.289362
gntR transcriptional regulator, gntR familySubName: Full=Transcriptional regulator, gntR family; chromosome CDS2012351 426 - 0.314554
greA transcription elongation factor greARecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS2031229 465 - 0.286022
greA transcription elongation factor greARecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS169858 561 + 0.299465
hrcA heat-inducible transcription repressor hrcARecName: Full=Heat-inducible transcription repressor HrcA; chromosome CDS2163380 1056 - 0.278409
iolR DNA-binding protein iolRSubName: Full=DNA-binding protein iolR; chromosome CDS511884 780 - 0.238462
lacI transcriptional regulator of the lacI familySubName: Full=Transcriptional regulator of the lacI family; chromosome CDS916580 1005 + 0.272637
lexA lexA repressorRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS1394722 603 + 0.300166
lytR membrane-bound protein lytRSubName: Full=Membrane-bound protein lytR; chromosome CDS2185493 1224 - 0.284314
marR transcriptional regulator, marR familySubName: Full=Transcriptional regulator, marR family; chromosome CDS2181209 477 - 0.303983
marR transcriptional regulator, marR familySubName: Full=Transcriptional regulator, marR family; chromosome CDS2017897 465 - 0.258065
marR transcriptional regulator, marR familySubName: Full=Transcriptional regulator, marR family; chromosome CDS85948 456 + 0.265351
merR transcriptional regulator, merR familySubName: Full=Transcriptional regulator, merR family; chromosome CDS1012044 855 + 0.305263
nusG transcription antitermination protein nusGRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS2763122 522 - 0.323755
padR putative transcriptional regulator, padR familySubName: Full=Putative transcriptional regulator, padR family; chromosome CDS939815 435 + 0.289655
padR CTC00601 putative transcriptional regulator (padR family)SubName: Full=Putative transcriptional regulator (PadR family); chromosome CDS625498 321 - 0.274143
padR CTC00619 regulatory protein (padR family)SubName: Full=Regulatory protein (PadR family); chromosome CDS641505 372 + 0.268817
parB chromosome partitioning protein parBSubName: Full=Chromosome partitioning protein parB; chromosome CDS60963 858 + 0.280886
parB chromosome partitioning parB family proteinSubName: Full=Chromosome partitioning parB family protein; chromosome CDS2058779 657 - 0.307458
phoP alkaline phosphatase synthesis transcriptional regulatory protein phoPSubName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP; chromosome CDS2077470 528 - 0.280303
phoP alkaline phosphatase synthesis transcriptional regulatory protein phoPSubName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP; chromosome CDS406476 687 + 0.267831
recG ATP-dependent DNA helicase recGSubName: Full=ATP-dependent DNA helicase recG; EC=3.6.1.-; chromosome CDS1319119 2052 + 0.274366
rpiR transcriptional regulator, rpiR familySubName: Full=Transcriptional regulator, rpiR family; chromosome CDS1417647 912 - 0.322368
rpoD RNA polymerase sigma factor rpoDRecName: Full=RNA polymerase sigma factor; chromosome CDS921750 849 + 0.303887
rpoD RNA polymerase sigma factor rpoDRecName: Full=RNA polymerase sigma factor SigA; chromosome CDS2138329 1101 - 0.333333
rpoN RNA polymerase sigma-54 factor rpoNSubName: Full=RNA polymerase sigma-54 factor rpoN; chromosome CDS364944 1386 + 0.261905
sigV CTC00688 RNA polymerase sigma factor sigVSubName: Full=RNA polymerase sigma factor sigV; chromosome CDS708021 534 - 0.235955
sinR putative transcriptional regulator sinRSubName: Full=Putative transcriptional regulator sinR; chromosome CDS1976494 516 + 0.27907
spaR CTC00628 subtilin biosynthesis regulatory protein spaRSubName: Full=Subtilin biosynthesis regulatory protein spaR; chromosome CDS646738 663 + 0.288084
tetR transcriptional regulator, tetR familySubName: Full=Transcriptional regulator, tetR family; chromosome CDS26462 567 - 0.268078
tipA transcriptional activator tipASubName: Full=Transcriptional activator tipA; chromosome CDS1248109 765 - 0.282353
virR response regulator, putative virRSubName: Full=Response regulator, putative virR; chromosome CDS1014662 705 - 0.224113