Gene list
Applied filters:
COG category: Transcription
Genomic element: megaplasmid
Number of genes found: 58
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| Silicibacter pomeroyi DSS-3, DSS-3 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SPOA0177 | hydrogen peroxide-inducible genes activator, putative | SubName: Full=Hydrogen peroxide-inducible genes activator, putative; | megaplasmid | CDS | 192528 | 693 | - | 0.59596 |
| NA | SPOA0348 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | megaplasmid | CDS | 390671 | 546 | + | 0.608059 |
| NA | SPOA0284 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 313162 | 891 | + | 0.666667 |
| NA | SPOA0306 | S1 RNA binding domain protein | SubName: Full=S1 RNA binding domain protein; | megaplasmid | CDS | 335830 | 2298 | - | 0.684073 |
| NA | SPOA0252 | transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | megaplasmid | CDS | 276053 | 1026 | + | 0.576998 |
| NA | SPOA0451 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | megaplasmid | CDS | 110630 | 477 | - | 0.528302 |
| NA | SPOA0314 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 349404 | 867 | + | 0.582468 |
| NA | SPOA0107 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 107348 | 894 | - | 0.58613 |
| NA | SPOA0199 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 210138 | 1479 | - | 0.623394 |
| NA | SPOA0224 | nitrite reductase heme biosynthesis D/L protein, putative | SubName: Full=Nitrite reductase heme biosynthesis D/L protein, putative; | megaplasmid | CDS | 246196 | 993 | + | 0.708963 |
| NA | SPOA0067 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | megaplasmid | CDS | 66808 | 648 | - | 0.67284 |
| NA | SPOA0085 | DNA-binding protein, putative | SubName: Full=DNA-binding protein, putative; | megaplasmid | CDS | 80961 | 219 | - | 0.575342 |
| NA | SPOA0075 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | megaplasmid | CDS | 72135 | 594 | + | 0.646465 |
| NA | SPOA0452 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | megaplasmid | CDS | 111099 | 474 | - | 0.544304 |
| NA | SPOA0242 | transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | megaplasmid | CDS | 265820 | 1041 | - | 0.585014 |
| NA | SPOA0149 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 160318 | 1317 | + | 0.668185 |
| NA | SPOA0375 | transcriptional regulator, gntR family | SubName: Full=Transcriptional regulator, gntR family; | megaplasmid | CDS | 419547 | 1464 | + | 0.607924 |
| NA | SPOA0338 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 381777 | 975 | + | 0.582564 |
| NA | SPOA0056 | DNA-binding protein, putative | SubName: Full=DNA-binding protein, putative; | megaplasmid | CDS | 50922 | 615 | - | 0.630894 |
| NA | SPOA0326 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 365032 | 885 | + | 0.699435 |
| NA | SPOA0105 | transcriptional regulator, putative | SubName: Full=Transcriptional regulator, putative; | megaplasmid | CDS | 105320 | 375 | - | 0.621333 |
| NA | SPOA0259 | transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | megaplasmid | CDS | 284124 | 1044 | + | 0.583333 |
| NA | SPOA0426 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | megaplasmid | CDS | 473076 | 996 | + | 0.673695 |
| NA | SPOA0417 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 463866 | 690 | - | 0.665217 |
| NA | SPOA0268 | transcriptional regulator, IclR family | SubName: Full=Transcriptional regulator, IclR family; | megaplasmid | CDS | 294459 | 813 | + | 0.627306 |
| NA | SPOA0301 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 330025 | 720 | + | 0.5625 |
| NA | SPOA0392 | RNA polymerase sigma-70 factor, putative | SubName: Full=RNA polymerase sigma-70 factor, putative; | megaplasmid | CDS | 441633 | 639 | + | 0.643192 |
| NA | SPOA0186 | Rrf2 family protein | SubName: Full=Rrf2 family protein; | megaplasmid | CDS | 198944 | 483 | + | 0.590062 |
| NA | SPOA0230 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 251221 | 918 | - | 0.599129 |
| NA | SPOA0060 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | megaplasmid | CDS | 56564 | 867 | + | 0.690888 |
| NA | SPOA0273 | DNA-binding protein, putative | SubName: Full=DNA-binding protein, putative; | megaplasmid | CDS | 300585 | 567 | - | 0.636684 |
| NA | SPOA0150 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | megaplasmid | CDS | 161659 | 1038 | - | 0.634875 |
| NA | SPOA0317 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | megaplasmid | CDS | 355845 | 459 | - | 0.618736 |
| NA | SPOA0102 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator, LuxR family; | megaplasmid | CDS | 102382 | 969 | - | 0.616099 |
| NA | SPOA0427 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | megaplasmid | CDS | 474087 | 333 | - | 0.624625 |
| NA | SPOA0423 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | megaplasmid | CDS | 469019 | 567 | + | 0.611993 |
| NA | SPOA0303 | replication protein, putative | SubName: Full=Replication protein, putative; | megaplasmid | CDS | 332220 | 1098 | - | 0.643898 |
| NA | SPOA0261 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 286995 | 681 | - | 0.580029 |
| NA | SPOA0164 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 180424 | 1386 | + | 0.608947 |
| NA | SPOA0289 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | megaplasmid | CDS | 318870 | 900 | + | 0.691111 |
| NA | SPOA0389 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | megaplasmid | CDS | 438569 | 438 | + | 0.664384 |
| NA | SPOA0159 | transcriptional regulator, LysR family | SubName: Full=CuyR; | megaplasmid | CDS | 175095 | 903 | + | 0.694352 |
| NA | SPOA0038 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator, LuxR family; | megaplasmid | CDS | 33041 | 1176 | - | 0.60119 |
| NA | SPOA0170 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | megaplasmid | CDS | 188365 | 543 | - | 0.54512 |
| NA | SPOA0405 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | megaplasmid | CDS | 451196 | 468 | - | 0.67735 |
| NA | SPOA0446 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 490624 | 897 | - | 0.691193 |
| NA | SPOA0357 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | megaplasmid | CDS | 399373 | 729 | + | 0.640604 |
| NA | SPOA0023 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | megaplasmid | CDS | 19700 | 657 | - | 0.668189 |
| NA | SPOA0344 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 386564 | 945 | - | 0.622222 |
| NA | SPOA0143 | transcriptional regulator, IclR family | SubName: Full=Transcriptional regulator, IclR family; | megaplasmid | CDS | 153574 | 846 | - | 0.652482 |
| NA | SPOA0165 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 181865 | 936 | - | 0.601496 |
| NA | SPOA0336 | transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | megaplasmid | CDS | 377348 | 1035 | + | 0.576812 |
| NA | SPOA0379 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 425152 | 1473 | + | 0.67685 |
| NA | SPOA0387 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 435270 | 915 | + | 0.644809 |
| NA | SPOA0281 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | megaplasmid | CDS | 308914 | 885 | + | 0.656497 |
| nirG | SPOA0225 | nitrite reductase heme biosynthesis G protein | SubName: Full=Nitrite reductase heme biosynthesis G protein; | megaplasmid | CDS | 247185 | 450 | + | 0.642222 |
| nirH | SPOA0226 | nitrite reductase heme biosynthesis H protein | SubName: Full=Nitrite reductase heme biosynthesis H protein; | megaplasmid | CDS | 247631 | 483 | + | 0.668737 |
| pcaQ | SPOA0047 | pca operon transcriptional activator PcaQ | SubName: Full=Pca operon transcriptional activator PcaQ; | megaplasmid | CDS | 41523 | 918 | + | 0.667756 |
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