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2024-06-02 16:08:58

Gene list

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COG category: Transcription
Genomic element: chromosome

Number of genes found: 151

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Lactobacillus acidophilus NCFM, NCFM
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA LBA0244 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS238636 966 - 0.322981
NA LBA0896 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS873268 339 - 0.353982
NA LBA0285 RNA-polymerase DNA-directed beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS282722 3654 + 0.394089
NA LBA1443 msm operon regulatory proteinSubName: Full=Msm operon regulatory protein; chromosome CDS1430544 840 + 0.282143
NA LBA1955 transcription regulator familySubName: Full=Transcription regulator family; chromosome CDS1966666 732 - 0.304645
NA LBA1367 transcriptional regulator, glucose kinaseSubName: Full=Transcriptional regulator, glucose kinase; chromosome CDS1341977 885 - 0.315254
NA LBA1840 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1852453 528 - 0.297348
NA LBA0016 fructokinaseSubName: Full=Fructokinase; EC=2.7.1.4; chromosome CDS16483 879 + 0.401593
NA LBA1094 putative ATPaseSubName: Full=Putative ATPase; chromosome CDS1076310 2061 + 0.291606
NA LBA1147 l-fucose operonSubName: Full=L-fucose operon; chromosome CDS1120521 411 - 0.326034
NA LBA0697 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS691866 1032 + 0.382752
NA LBA0475 restriction endonucleaseSubName: Full=Restriction endonuclease; chromosome CDS463844 4506 + 0.320684
NA LBA0416 RNA helicaseSubName: Full=RNA helicase; chromosome CDS391744 1362 + 0.354626
NA LBA1136 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1113655 507 - 0.345168
NA LBA1691 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1713454 501 + 0.317365
NA LBA0226 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS223292 717 - 0.322176
NA LBA1371 putative transcriptional regulator phage-relatedSubName: Full=Putative transcriptional regulator phage-related; chromosome CDS1346639 384 - 0.372396
NA LBA1798 response regulatorSubName: Full=Response regulator; chromosome CDS1819160 825 - 0.326061
NA LBA0333 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS317178 372 + 0.290323
NA LBA1649 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1669844 801 - 0.359551
NA LBA0607 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS595488 813 + 0.333333
NA LBA1899 putative transcriptional regulatorRecName: Full=Sulfurtransferase; chromosome CDS1909226 663 - 0.313726
NA LBA0355 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS335494 882 - 0.342404
NA LBA0248 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS243640 453 + 0.304636
NA LBA0551 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome CDS538341 501 + 0.351297
NA LBA1671 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome CDS1692580 453 - 0.368653
NA LBA1005 putative acetyltransferaseSubName: Full=Putative acetyltransferase; EC=2.3.1.-; chromosome CDS983004 390 + 0.25641
NA LBA0443 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS423467 285 + 0.266667
NA LBA1874 transcriptional regulator-familySubName: Full=Transcriptional regulator-family; chromosome CDS1886552 951 - 0.352261
NA LBA1520 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1516073 351 - 0.321937
NA LBA0573 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS559451 444 + 0.331081
NA LBA1820 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS1834391 687 - 0.352256
NA LBA1546 putative transcriptional regulatorRecName: Full=Transcriptional repressor NrdR; chromosome CDS1536270 468 - 0.361111
NA LBA1172 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1155140 840 - 0.302381
NA LBA1241 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1217335 447 - 0.319911
NA LBA0058 putative phage DEAD box family helicaseSubName: Full=Putative phage DEAD box family helicase; chromosome CDS54086 2835 + 0.322751
NA LBA0317 RNA-polymerase DNA-directedRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS302848 939 + 0.366347
NA LBA1034 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1024070 462 + 0.320346
NA LBA1700 transcriptional regulator-typeSubName: Full=Transcriptional regulator-type; chromosome CDS1722313 1080 - 0.280556
NA LBA1701 melibiose operon regulatory proteinSubName: Full=Melibiose operon regulatory protein; chromosome CDS1723902 1017 - 0.320551
NA LBA0095 putative regulatory proteinSubName: Full=Putative regulatory protein; chromosome CDS95028 942 + 0.329087
NA LBA1775 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1802170 438 + 0.326484
NA LBA1444 transcriptional regulator familySubName: Full=Transcriptional regulator family; chromosome CDS1431441 435 - 0.344828
NA LBA0554 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS541608 513 - 0.331384
NA LBA0442 phage related helicaseSubName: Full=Phage related helicase; chromosome CDS420860 2595 + 0.304432
NA LBA0617 ATP-dependent RNA helicase, DEAD-DEAH boxSubName: Full=ATP-dependent RNA helicase, DEAD-DEAH box; chromosome CDS604098 1239 + 0.332526
NA LBA1862 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1870590 819 - 0.302808
NA LBA1258 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1235554 297 - 0.3367
NA LBA1788 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1811749 210 - 0.390476
NA LBA0818 putative cold-shock proteinSubName: Full=Putative cold-shock protein; chromosome CDS801193 204 + 0.318627
NA LBA1614 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1615696 417 - 0.302158
NA LBA0284 RNA-polymerase DNA-directed beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS279065 3642 + 0.39676
NA LBA1692 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome CDS1713982 564 - 0.338652
NA LBA1664 acetyltransferaseSubName: Full=Acetyltransferase; chromosome CDS1686686 516 + 0.321705
NA LBA0130 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS123679 453 + 0.333333
NA LBA1297 dsRNA-specific ribonuclease RNaseIIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1277525 687 - 0.317322
NA LBA1096 putative repressor proteinSubName: Full=Putative repressor protein; chromosome CDS1078677 930 - 0.291398
NA LBA0232 RNA polymerase delta subunitRecName: Full=Probable DNA-directed RNA polymerase subunit delta; AltName: Full=RNAP delta factor; chromosome CDS228791 555 + 0.398198
NA LBA1148 fibronectin-binding protein (adherence-virulence)SubName: Full=Fibronectin-binding protein (Adherence-virulence); chromosome CDS1121174 1692 + 0.315012
NA LBA1431 two-component response regulatorSubName: Full=Two-component response regulator; chromosome CDS1418057 666 - 0.34985
NA LBA0403 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS378008 465 + 0.326882
NA LBA0962 hypothetical proteinRecName: Full=Segregation and condensation protein B; chromosome CDS938384 594 + 0.311448
NA LBA1577 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1570619 834 - 0.270983
NA LBA0556 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome CDS544628 438 + 0.356164
NA LBA0897 putative cro-like proteinSubName: Full=Putative cro-like protein; chromosome CDS873770 204 + 0.352941
NA LBA0117 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS112683 720 - 0.323611
NA LBA1542 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1531202 435 - 0.317241
NA LBA0085 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS87843 816 + 0.323529
NA LBA0763 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS748544 552 + 0.304348
NA LBA0228 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS225591 909 + 0.348735
NA LBA1936 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1947730 525 + 0.337143
NA LBA1604 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1597918 330 + 0.354545
NA LBA0249 putative acetyltransferaseSubName: Full=Putative acetyltransferase; chromosome CDS244511 504 + 0.365079
NA LBA0746 response regulatorSubName: Full=Response regulator; chromosome CDS732619 723 + 0.355463
NA LBA1293 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1270710 408 - 0.29902
NA LBA0256 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS248261 207 + 0.323671
NA LBA0925 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS901255 939 - 0.343983
NA LBA0603 response regulator bacteriocinproduction-relatedSubName: Full=Response regulator bacteriocinproduction-related; chromosome CDS589981 798 + 0.315789
NA LBA1021 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1014166 192 - 0.296875
NA LBA1393 acetyltransferaseSubName: Full=Acetyltransferase; chromosome CDS1385483 513 - 0.348928
NA LBA0237 transcriptional regulator raffinose operonSubName: Full=Transcriptional regulator raffinose operon; chromosome CDS234089 822 - 0.329684
NA LBA0188 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS180723 1104 + 0.38587
NA LBA0886 sugar kinase-putative transcriptional regulatorSubName: Full=Sugar kinase-putative transcriptional regulator; chromosome CDS864031 885 - 0.348023
NA LBA0267 ATP-dependent RNA helicase-like proteinSubName: Full=ATP-dependent RNA helicase-like protein; chromosome CDS257801 1488 + 0.384409
NA LBA0125 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS119982 810 + 0.274074
NA LBA1030 streptothricine-acetyl-transferaseSubName: Full=Streptothricine-acetyl-transferase; EC=2.3.1.-; chromosome CDS1021538 534 + 0.344569
NA LBA0138 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS131764 741 + 0.336032
NA LBA0351 putative sigma factor 30 RNA polymeraseSubName: Full=Putative sigma factor 30 RNA polymerase; chromosome CDS332411 537 + 0.303538
NA LBA0449 Ribonuclease RRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS430808 2349 + 0.362282
NA LBA1774 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1801749 279 - 0.329749
NA LBA1835 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1848188 624 - 0.341346
NA LBA1480 putative beta-glucosidaseSubName: Full=Putative beta-glucosidase; chromosome CDS1467162 1281 - 0.327088
NA LBA0128 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS122924 279 + 0.326165
NA LBA1863 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1871841 492 - 0.298781
NA LBA0078 putative response regulatorSubName: Full=Putative response regulator; chromosome CDS79913 717 + 0.377964
NA LBA1659 response regulatorSubName: Full=Response regulator; chromosome CDS1682829 702 + 0.354701
NA LBA0599 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS584197 765 - 0.355556
atkY LBA1963 similar to the negative regulator of copYZAB operonSubName: Full=Similar to the negative regulator of copYZAB operon; chromosome CDS1975864 441 + 0.37415
cadX LBA0022 cadmium resistance regulatory proteinSubName: Full=Cadmium resistance regulatory protein; chromosome CDS20491 354 + 0.293785
ccpA LBA0431 catabolite control protein ASubName: Full=Catabolite control protein A; chromosome CDS405409 1002 + 0.347305
dinG LBA1164 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1141057 2784 - 0.322917
epsA LBA1737 exopolysaccharide biosynthesis proteinSubName: Full=Exopolysaccharide biosynthesis protein; chromosome CDS1770421 1056 - 0.391098
fruR LBA1779 repressor of fructose operonSubName: Full=Repressor of fructose operon; chromosome CDS1806152 756 - 0.387566
gntR LBA1189 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1166344 375 - 0.293333
gntR LBA0882 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS859878 723 - 0.3361
gntR LBA0592 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS577138 726 + 0.376033
gntR LBA0875 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS854254 705 - 0.316312
gntR LBA0516 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS502193 702 + 0.373219
gntR LBA0393 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS364618 711 + 0.351617
greA LBA1517 transcriptional elongation factorRecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS1511771 477 - 0.366876
greA LBA0206 transcriptional elongation factorRecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS202233 462 + 0.352814
hrcA LBA1249 inducible transcription repressor HrcARecName: Full=Heat-inducible transcription repressor HrcA; chromosome CDS1227412 1050 - 0.345714
lacR LBA1465 transcription repressor of beta-galactosidasegeneSubName: Full=Transcription repressor of beta-galactosidasegene; chromosome CDS1448791 1008 - 0.334325
lexA LBA1280 transcriptional repressor proteinRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS1259374 627 + 0.385965
licT LBA1708 transcriptional antiterminatorSubName: Full=Transcriptional antiterminator; chromosome CDS1735467 855 - 0.318129
licT LBA0724 transcription antiterminatorSubName: Full=Transcription antiterminator; chromosome CDS713107 846 + 0.306147
licT LBA1479 beta-glucoside transcriptional antiterminatorSubName: Full=Beta-glucoside transcriptional antiterminator; chromosome CDS1466117 855 - 0.305263
lisR LBA1525 two-component system regulatorSubName: Full=Two-component system regulator; chromosome CDS1520292 717 - 0.358438
lysR LBA1074 malolactic regulatorSubName: Full=Malolactic regulator; chromosome CDS1053483 915 - 0.335519
lysR LBA1410 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1398296 855 - 0.299415
lysR LBA1233 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1207296 852 - 0.320423
lysR LBA0065 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS67176 642 - 0.271028
lysR LBA1024 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1016065 867 - 0.340254
lysR LBA1039 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1029498 294 - 0.312925
lysR LBA0458 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS442703 882 - 0.328798
lysR LBA1054 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1039555 837 - 0.332139
lysR LBA1124 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1102218 972 + 0.308642
lytR LBA1762 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1792881 1275 - 0.381176
marR LBA1663 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1686231 456 + 0.339912
marR LBA0596 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS581454 441 + 0.328798
msmR LBA0500 msm operon repressorSubName: Full=Msm operon repressor; chromosome CDS487489 1005 + 0.319403
mutR LBA1934 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1946230 849 + 0.309776
nusA LBA1259 transcription termination-antitermination factorSubName: Full=Transcription termination-antitermination factor; chromosome CDS1235859 1170 - 0.37265
nusB LBA1333 transcriptional termination factorSubName: Full=Transcriptional termination factor; chromosome CDS1311194 393 - 0.346056
nusG LBA0358 transcriptional antiterminatorRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS338867 558 + 0.358423
parB LBA1826 chromosome partitioning proteinSubName: Full=Chromosome partitioning protein; chromosome CDS1841144 885 - 0.358192
parB LBA1828 chromosome partitioning proteinSubName: Full=Chromosome partitioning protein; chromosome CDS1842801 831 - 0.345367
rbsR LBA1488 putative ribose operon repressorSubName: Full=Putative ribose operon repressor; chromosome CDS1476682 1014 - 0.333333
rbsR LBA1472 ribose operon repressorSubName: Full=Ribose operon repressor; chromosome CDS1456974 960 + 0.309375
recG LBA1309 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1289072 2037 - 0.340206
relA LBA0932 ppGpp synthetaseSubName: Full=PpGpp synthetase; EC=2.7.6.5; chromosome CDS905909 2241 + 0.355199
rpiR LBA1688 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1709204 783 - 0.296296
rpiR LBA1702 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1726890 855 - 0.335673
rpoD LBA1196 RNA polymerase sigma factorRecName: Full=RNA polymerase sigma factor SigA; chromosome CDS1171024 1071 - 0.378151
rpoZ LBA1324 DNA-directed RNA polymerase, omega subunitRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS1303712 225 - 0.391111
scrR LBA0399 sucrose operon repressorSubName: Full=Sucrose operon repressor; chromosome CDS372648 987 - 0.330294
tetR LBA1638 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS1658153 564 - 0.349291
tetR LBA0132 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS125363 684 + 0.345029
trcF LBA0273 transcriptional repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS263464 3498 + 0.341338
treR LBA1013 trehalose operon transcriptional repressorSubName: Full=Trehalose operon transcriptional repressor; chromosome CDS991288 726 + 0.296143
xylR LBA1368 transcriptional xylose repressorSubName: Full=Transcriptional xylose repressor; chromosome CDS1342999 1146 + 0.315009