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2024-06-02 12:11:19

Gene list

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COG category: Transcription
Genomic element: chromosome II

Number of genes found: 131

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Vibrio fischeri ES114, ES114
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA VFA0911 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1036472 909 + 0.354235
NA VFA0820 RNA polymerase sigma factor SigZSubName: Full=RNA polymerase ECF-type sigma factor; chromosome II CDS924448 546 - 0.322344
NA VFA0415 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS470014 1230 + 0.341463
NA VFA0258 transcriptional regulator, MerR familySubName: Full=Transcriptional regulator, MerR family; chromosome II CDS289130 1503 + 0.394544
NA VFA0771 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS866746 873 + 0.367698
NA VFA0653 IAA acetyltransferaseSubName: Full=IAA acetyltransferase; EC=2.3.1.-; chromosome II CDS727237 453 - 0.342163
NA VFA0043 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome II CDS47378 744 - 0.358871
NA VFA0811 MalT regulatory proteinSubName: Full=Fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein; chromosome II CDS916154 2706 + 0.383962
NA VFA0561 transcriptional regulatorSubName: Full=Two component response regulator; chromosome II CDS645882 657 + 0.391172
NA VFA0893 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome II CDS1013390 1011 + 0.3818
NA VFA0931 transcriptional regulatory, AraC-likeSubName: Full=Transcriptional regulatory protein, AraC-like protein; chromosome II CDS1055661 786 - 0.357506
NA VFA0701 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome II CDS778199 657 - 0.394216
NA VFA0553 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome II CDS637578 1383 + 0.388286
NA VFA1053 transcriptional regulator, MerR familySubName: Full=Transcriptional regulator, MerR family; EC=2.1.1.-; chromosome II CDS1189990 522 + 0.373563
NA VFA1115 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1256569 885 + 0.40791
NA VFA0348 Ebg operon repressorSubName: Full=Ebg operon repressor; chromosome II CDS389163 996 - 0.371486
NA VFA0963 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1085479 933 - 0.356913
NA VFA1122 L-2,4-diaminobutyric acid acetyltransferaseSubName: Full=L-2,4-diaminobutyric acid acetyltransferase; EC=2.3.1.-; chromosome II CDS1262222 558 + 0.405018
NA VFA0254 hypothetical proteinSubName: Full=Lipoprotein, putative; chromosome II CDS285957 381 - 0.364829
NA VFA0738 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS835543 642 - 0.431464
NA VFA0361 transcriptional repressorSubName: Full=DNA-binding transcriptional repressor; chromosome II CDS407371 999 - 0.375375
NA VFA0320 transcriptional activator TenASubName: Full=Transcriptional activator TenA; chromosome II CDS354202 663 + 0.393665
NA VFA0597 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS680013 936 + 0.383547
NA VFA0214 probable transcriptional regulator SyrBSubName: Full=Probable transcriptional regulator SyrB; chromosome II CDS238746 909 - 0.356436
NA VFA0334 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome II CDS371751 519 - 0.342967
NA VFA0708 transcriptional regulator, AraC familySubName: Full=Predicted DNA-binding transcriptional regulator; chromosome II CDS793867 858 - 0.39627
NA VFA0489 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS563552 933 - 0.35477
NA VFA1066 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1203632 900 - 0.374444
NA VFA0024 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS26478 951 + 0.392219
NA VFA1015 RpoS-like sigma factorRecName: Full=RNA polymerase sigma factor; chromosome II CDS1142264 885 - 0.324294
NA VFA0311 phage shock protein ASubName: Full=Regulatory protein for phage-shock-protein operon; chromosome II CDS346665 666 + 0.358859
NA VFA0766 rna polymerase sigma-E factor homologueSubName: Full=RNA polymerase ECF-type sigma factor; chromosome II CDS862237 612 - 0.374183
NA VFA0862 nitric oxide reductase regulator NorRSubName: Full=Anaerobic nitric oxide reductase regulatory protein 2, NorR2; chromosome II CDS971755 1536 + 0.384115
NA VFA0496 Mlc proteinSubName: Full=DNA-binding transcriptional repressor; chromosome II CDS571437 1215 + 0.397531
NA VFA1061 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1198171 915 + 0.342077
NA VFA1142 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1286567 888 - 0.415541
NA VFA0793 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS889413 903 + 0.379845
NA VFA0034 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS35233 897 - 0.419175
NA VFA0025 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome II CDS27455 456 - 0.375
NA VFA0525 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome II CDS599174 768 + 0.269531
NA VFA1126 AraC family transcriptional regulatorSubName: Full=AraC family transcriptional regulator; chromosome II CDS1266436 891 + 0.252525
NA VFA0053 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS57129 903 + 0.37763
NA VFA0181 probable transcriptional regulator SyrBSubName: Full=Probable transcriptional regulator SyrB; chromosome II CDS202959 666 + 0.393393
NA VFA0038 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS40996 840 + 0.403571
NA VFA0935 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1058205 882 + 0.380952
NA VFA0151 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome II CDS166800 1503 + 0.407851
NA VFA0925 LuxR, transcriptional regulatorRecName: Full=Transcriptional activator protein LuxR; chromosome II CDS1050941 753 + 0.304117
NA VFA0593 transcriptional regulator, TetR familySubName: Full=LuxT transcriptional regulator, TetR family; chromosome II CDS677682 462 - 0.380952
NA VFA0595 cold shock proteinSubName: Full=Cold shock protein; chromosome II CDS678967 207 - 0.400966
NA VFA0556 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS640324 801 - 0.364544
NA VFA0359 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome II CDS403988 612 + 0.366013
NA VFA0231 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS254374 636 + 0.261006
NA VFA0744 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS840741 888 + 0.344595
NA VFA0646 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS721488 459 - 0.350763
NA VFA0255 transcriptional regulator, AraC familySubName: Full=Predicted DNA-binding transcriptional regulator; chromosome II CDS286890 789 + 0.375158
NA VFA0238 glycerol-3-phosphate regulon repressorSubName: Full=Glycerol-3-phosphate regulon repressor protein GlpR; chromosome II CDS264307 768 + 0.354167
NA VFA1048 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1184127 930 - 0.38172
NA VFA0313 stress-responsive transcriptional regulator PspCSubName: Full=PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair; chromosome II CDS347618 387 + 0.405685
NA VFA0054 transcriptional regulator, Cro/CI familySubName: Full=Transcriptional repressor, Cro/CI family; chromosome II CDS58095 210 - 0.366667
NA VFA1082 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome II CDS1222789 810 + 0.214815
NA VFA0049 hypothetical proteinSubName: Full=Transcriptional regulator, ArsR family; chromosome II CDS54130 396 - 0.368687
NA VFA0387 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS439064 912 + 0.382675
NA VFA0383 exoribonuclease IIRecName: Full=Exoribonuclease 2; EC=3.1.13.1; AltName: Full=Exoribonuclease II; chromosome II CDS432267 2043 - 0.397455
NA VFA0240 SUA5 proteinSubName: Full=SUA5 protein; chromosome II CDS266829 1122 - 0.270945
NA VFA0857 transcriptional repressor SmtBSubName: Full=Transcriptional repressor SmtB; chromosome II CDS966803 342 + 0.368421
NA VFA0730 transcriptional regulators, LysR familySubName: Full=Predicted DNA-binding transcriptional regulator; chromosome II CDS826961 888 - 0.362613
NA VFA0088 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome II CDS96381 615 + 0.37561
NA VFA0211 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome II CDS234641 687 + 0.352256
NA VFA1148 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1291558 963 - 0.403946
NA VFA0454 histidine utilization repressorSubName: Full=Histidine utilization repressor; chromosome II CDS523677 702 - 0.349003
NA VFA0669 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS739720 342 - 0.380117
NA VFA0626 acetyltransferaseSubName: Full=Acetyltransferase; EC=2.3.1.-; chromosome II CDS705157 435 - 0.326437
NA VFA0833 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome II CDS938070 783 - 0.324393
NA VFA0991 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS1113846 1518 - 0.372859
NA VFA0259 hypothetical transcriptional regulatory proteinSubName: Full=Hypothetical transcriptional regulatory protein; chromosome II CDS290670 1101 - 0.288828
NA VFA0880 putative DNA-binding Protein--AraC type helix turn helixSubName: Full=Putative AraC-type HTH DNA-binding protein; chromosome II CDS993198 852 + 0.248826
NA VFA0176 transcriptional regulator, ArsR familySubName: Full=Transcriptional regulator, ArsR family; chromosome II CDS199429 312 + 0.38141
NA VFA0271 transcriptional regulators, LysR family chromosome II CDS302268 303 + 0.363036
NA VFA0247 SUA5 proteinSubName: Full=SUA5 protein; chromosome II CDS274290 1164 - 0.306701
NA VFA1094 cold shock proteinSubName: Full=DNA-binding transcriptional regulator; chromosome II CDS1234560 210 - 0.414286
NA VFA0460 transcription-repair coupling factor chromosome II CDS529000 1902 - 0.423239
NA VFA0270 transcriptional regulator chromosome II CDS301662 576 + 0.381944
NA VFA0791 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS887279 909 + 0.358636
NA VFA1086 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1227469 891 + 0.368126
NA VFA0310 psp operon transcriptional activatorSubName: Full=DNA-binding transcriptional activator; chromosome II CDS345470 1020 - 0.378431
NA VFA0851 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome II CDS961390 870 - 0.386207
NA VFA0266 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome II CDS298339 666 - 0.366366
NA VFA0897 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1018124 864 - 0.344907
NA VFA1121 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome II CDS1261533 426 + 0.380282
NA VFA1063 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome II CDS1200669 474 + 0.392405
NA VFA0846 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS955271 1191 + 0.36272
NA VFA1006 transcriptional regulator, GlpR familySubName: Full=DNA-binding transcriptional dual regulator; chromosome II CDS1131240 777 - 0.404118
NA VFA0384 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome II CDS434633 1905 + 0.450919
NA VFA0154 ATP-dependent RNA helicase DbpASubName: Full=ATP-dependent RNA helicase, specific for 23S rRNA; chromosome II CDS171550 1389 - 0.403888
NA VFA0580 hypothetical proteinSubName: Full=RstB2 protein; chromosome II CDS663611 327 - 0.314985
NA VFA1046 transcriptional regulator, LysR familySubName: Full=DNA-binding transcriptional regulator; chromosome II CDS1181671 870 + 0.402299
NA VFA0582 cryptic phage CTXphi transcriptional repressor rstRSubName: Full=Transcriptional repressor rstR; chromosome II CDS665216 336 + 0.300595
NA VFA0871 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS984628 480 - 0.25625
NA VFA1024 transcriptional regulatorSubName: Full=Two-component response regulator, sigma factor PP2C-like phosphatase; chromosome II CDS1154988 1518 + 0.368906
NA VFA0739 acetyltransferaseSubName: Full=Predicted acetyltransferase; EC=2.3.1.-; chromosome II CDS836370 495 + 0.416162
NA VFA0852 transcriptional regulatory proteinSubName: Full=Fused predicted DNA-binding transcriptional regulator/predicted amino transferase; EC=2.6.1.-; chromosome II CDS962372 1155 + 0.405195
NA VFA0029 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome II CDS31173 888 + 0.371622
NA VFA0584 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS667955 579 - 0.367876
NA VFA0978 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1100655 870 + 0.385057
NA VFA1109 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS1252771 903 + 0.393134
NA VFA0063 transcriptional regulatorSubName: Full=Predicted DNA-binding transcriptional regulator; chromosome II CDS68918 519 + 0.34104
NA VFA0523 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome II CDS598019 192 + 0.411458
NA VFA1171 DNA-binding protein ParBSubName: Full=ParB family protein; chromosome II CDS1329801 975 - 0.391795
NA VFA0114 methyltransferaseSubName: Full=Methyltransferase; EC=2.1.1.-; chromosome II CDS129335 1170 + 0.384615
NA VFA0419 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS474092 936 + 0.362179
NA VFA0662 acetyltransferaseSubName: Full=Acetyltransferase; EC=2.3.1.-; chromosome II CDS734797 426 - 0.361502
NA VFA0436 hypothetical transcriptional regulatory proteinSubName: Full=Putative transcriptional regulatory protein; chromosome II CDS500178 678 - 0.361357
NA VFA0785 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome II CDS880584 900 - 0.357778
NA VFA0724 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS821808 924 - 0.376623
NA VFA0374 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome II CDS422266 1305 + 0.384674
NA VFA0506 two component response regulatorSubName: Full=Two component response regulator; chromosome II CDS580603 1746 + 0.35567
NA VFA0645 acetyltransferaseSubName: Full=Acetyltransferase; chromosome II CDS720903 444 - 0.353604
NA VFA0732 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome II CDS829694 804 - 0.370647
NA VFA0031 transcriptional regulators, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome II CDS33115 885 - 0.39548
NA VFA0860 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS970724 483 + 0.291925
NA VFA0105 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome II CDS117794 936 + 0.387821
NA VFA0459 transcription-repair coupling factor chromosome II CDS527447 1599 - 0.409006
NA VFA0041 two component response regulator UhpASubName: Full=DNA-binding response regulator in two-component regulatory system wtih UhpB; chromosome II CDS44954 609 - 0.422003
NA VFA0943 catabolite repressor-activatorSubName: Full=DNA-binding transcriptional regulator; chromosome II CDS1066257 978 + 0.394683
NA VFA0400 PTS system, mannitol-specific IIBC componentSubName: Full=Transcriptional repressor; EC=2.7.1.69; chromosome II CDS454959 981 - 0.417941
NA VFA0179 transcriptional activator protein IrlRSubName: Full=DNA-binding response regulator in two-component regulatory system with CusS; chromosome II CDS201600 681 - 0.367107
NA VFA0751 transcriptional regulatory protein TyrRSubName: Full=DNA-binding transcriptional regulator, tyrosine-binding; chromosome II CDS848054 1548 - 0.378553
NA VFA1113 transcriptional regulator, AsnC familySubName: Full=Transcriptional regulator, AsnC family; chromosome II CDS1255307 444 + 0.385135
NA VFA1054 acetyltransferaseSubName: Full=Predicted acetyltransferase; EC=2.3.1.-; chromosome II CDS1190589 432 - 0.356481
NA VFA0688 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS761935 783 - 0.284802
NA VFA1160 transcriptional regulatorSubName: Full=Predicted DNA-binding transcriptional regulator; chromosome II CDS1304480 909 + 0.409241