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2024-06-17 17:55:53

Gene list

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COG category: Transcription
Genomic element: chromosome

Number of genes found: 102

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Methylococcus capsulatus str. Bath, Bath
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA MCA0413 conserved hypothetical proteinRecName: Full=UPF0301 protein MCA0413 1; chromosome CDS413786 549 - 0.652095
NA MCA2828 cold shock domain family proteinSubName: Full=Cold shock domain family protein; chromosome CDS3017504 273 + 0.622711
NA MCA3039 rubisco operon transcriptional regulatorSubName: Full=Rubisco operon transcriptional regulator; chromosome CDS3225001 957 - 0.609195
NA MCA2997 aminotransferase, class ISubName: Full=Aminotransferase, class I; chromosome CDS3170363 1359 - 0.633554
NA MCA1627 transcriptional regulator, Sir2 familyRecName: Full=NAD-dependent protein deacylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; chromosome CDS1730107 768 - 0.717448
NA MCA2706 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS2890813 1065 + 0.628169
NA MCA0726 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS764490 606 - 0.615512
NA MCA1939 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS2088244 666 - 0.633634
NA MCA1388 transcriptional regulator, ArsR familySubName: Full=Transcriptional regulator, ArsR family; chromosome CDS1473135 342 - 0.578947
NA MCA0792 cold shock proteinSubName: Full=Cold shock protein; chromosome CDS835417 210 + 0.528571
NA MCA0401 putative transcription elongation factorSubName: Full=Putative transcription elongation factor; chromosome CDS404950 501 + 0.654691
NA MCA1764 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS1892803 675 + 0.665185
NA MCA3027 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS3212514 996 - 0.628514
NA MCA0593 protein phosphatase/kinase family proteinSubName: Full=Protein phosphatase/kinase family protein; chromosome CDS623850 1788 - 0.686801
NA MCA0260 putative toluene-tolerance proteinSubName: Full=Putative toluene-tolerance protein; chromosome CDS250423 249 + 0.64257
NA MCA2652 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2833646 237 + 0.64557
NA MCA1892 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2035968 1149 + 0.603133
NA MCA2976 DNA binding response regulatorSubName: Full=DNA binding response regulator; chromosome CDS3151442 555 - 0.607207
NA MCA0004 ParB family proteinSubName: Full=ParB family protein; chromosome CDS3364 849 + 0.660777
NA MCA2962 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS3136735 1017 + 0.603736
NA MCA1780 putative transcriptional activator, Baf familyRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS1910378 741 - 0.673414
NA MCA2336 conserved hypothetical proteinRecName: Full=UPF0301 protein MCA2336 2; chromosome CDS2530469 567 - 0.620811
NA MCA1991 putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS2140889 1938 - 0.665635
NA MCA2157 putative ribonuclease BNSubName: Full=Putative ribonuclease BN; chromosome CDS2324309 1293 + 0.638824
NA MCA0447 sigma-54 dependent DNA-binding response regulatorSubName: Full=Sigma-54 dependent DNA-binding response regulator; chromosome CDS459204 942 + 0.660297
NA MCA3006 transcriptional regulator, AbrB familySubName: Full=Transcriptional regulator, AbrB family; chromosome CDS3186430 231 + 0.688312
NA MCA2883 Rrf2 family proteinSubName: Full=Rrf2 family protein; chromosome CDS3075529 489 + 0.627812
NA MCA1821 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1951966 612 + 0.614379
NA MCA0772 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS815280 732 - 0.63388
NA MCA2642 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS2826408 759 + 0.662714
NA MCA2812 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome CDS3001909 414 + 0.673913
NA MCA1598 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1705856 720 + 0.606944
NA MCA1523 cold shock proteinSubName: Full=Cold shock protein; chromosome CDS1625835 210 + 0.557143
NA MCA0661 ROK family proteinSubName: Full=ROK family protein; chromosome CDS694018 849 - 0.70318
NA MCA0246 adenine-specific DNA methyltransferaseSubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS240908 651 + 0.606759
NA MCA2535 transcriptional regulator, ArsR familySubName: Full=Transcriptional regulator, ArsR family; chromosome CDS2711598 303 + 0.564356
NA MCA3010 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3192837 1272 + 0.656447
NA MCA0370 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS374530 846 - 0.652482
NA MCA1574 ATP-dependent RNA helicase, DEAD/DEAH box familySubName: Full=ATP-dependent RNA helicase, DEAD/DEAH box family; chromosome CDS1671149 1500 + 0.635333
NA MCA0122 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS128160 981 - 0.651376
NA MCA0316 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS310664 531 + 0.627119
NA MCA2959 prophage MuMc02, peptidase, family S24SubName: Full=Prophage MuMc02, peptidase, family S24; chromosome CDS3135799 582 + 0.585911
NA MCA1011 ATP-dependent RNA helicase, DEAD/DEAH box familyRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS1060280 1362 + 0.668135
NA MCA2682 prophage LambdaMc01, helicase, SNF2 familySubName: Full=Prophage LambdaMc01, helicase, SNF2 family; chromosome CDS2863366 2778 - 0.62059
NA MCA3005 ATP-dependent RNA helicase, DEAD/DEAH box familySubName: Full=ATP-dependent RNA helicase, DEAD/DEAH box family; chromosome CDS3182749 3639 + 0.663369
NA MCA1260 transcriptional regulator, LuxR familySubName: Full=Transcriptional regulator, LuxR family; chromosome CDS1339919 768 + 0.644531
NA MCA1659 conserved hypothetical protein TIGR00244RecName: Full=Transcriptional repressor NrdR; chromosome CDS1761869 498 - 0.630522
NA MCA0551 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS574465 2670 + 0.647191
NA MCA0833 response regulatorSubName: Full=Response regulator; chromosome CDS875767 1170 + 0.636752
NA MCA0999 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome CDS1046085 891 - 0.690236
NA MCA2045 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome CDS2198498 573 - 0.635253
NA MCA2456 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome CDS2634723 942 - 0.622081
NA MCA2256 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS2445721 624 - 0.621795
NA MCA1744 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS1860615 849 + 0.647821
NA MCA0993 Rrf2 family proteinSubName: Full=Rrf2 family protein; chromosome CDS1039600 462 - 0.651515
NA MCA1807 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1939342 657 + 0.624049
NA MCA1145 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS1202007 381 + 0.608924
NA MCA0228 response regulatorSubName: Full=Response regulator; chromosome CDS225302 426 - 0.629108
NA MCA2158 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS2325627 885 - 0.614689
NA MCA3069 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3253876 216 + 0.643519
NA MCA1032 S1 RNA binding domain proteinSubName: Full=S1 RNA binding domain protein; chromosome CDS1083865 2208 + 0.668025
NA MCA1651 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1755908 369 - 0.593496
NA MCA2869 putative S-layer proteinSubName: Full=Putative S-layer protein; chromosome CDS3062391 1062 + 0.660075
NA MCA0119 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS124746 459 - 0.684096
NA MCA1339 mercuric resistance operon regulatory proteinSubName: Full=Mercuric resistance operon regulatory protein; chromosome CDS1424053 408 - 0.651961
NA MCA2330 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS2525010 687 + 0.641921
NA MCA0825 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS867863 870 + 0.532184
NA MCA0777 DNA binding response regulator, LuxR familySubName: Full=DNA binding response regulator, LuxR family; chromosome CDS821027 648 - 0.640432
NA MCA2506 Rrf2 family proteinSubName: Full=Rrf2 family protein; chromosome CDS2683110 453 - 0.624724
NA MCA2269 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome CDS2464933 903 + 0.674419
cpxR MCA2279 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS2474688 717 - 0.677824
cysB MCA2469 cys regulon transcriptional activatorSubName: Full=Cys regulon transcriptional activator; chromosome CDS2646592 975 - 0.606154
fis MCA1746 DNA-binding protein FisSubName: Full=DNA-binding protein Fis; chromosome CDS1862532 291 + 0.597938
greA MCA1851 transcription elongation factor GreARecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS1986153 477 - 0.616352
hepA MCA2531 RNA polymerase-associated protein HepARecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS2705323 2850 + 0.652632
hrcA MCA1858 heat-inducible transcription repressor HrcARecName: Full=Heat-inducible transcription repressor HrcA; chromosome CDS1995875 1053 - 0.626781
hypB MCA1602 hydrogenase accessory protein HypBSubName: Full=Hydrogenase accessory protein HypB; chromosome CDS1708878 852 + 0.664319
kdpE MCA2213 DNA binding response regulator KdpESubName: Full=DNA binding response regulator KdpE; chromosome CDS2388047 696 - 0.66092
lexA MCA2167 LexA repressorRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS2340073 609 - 0.668309
metR MCA2261 transcriptional regulator MetRSubName: Full=Transcriptional regulator MetR; chromosome CDS2454949 942 + 0.665605
mfd MCA1864 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS2002683 3444 + 0.639954
nifA MCA0764 transcriptional regulator NifASubName: Full=Transcriptional regulator NifA; chromosome CDS803938 1536 + 0.621094
nusA MCA1316 N utilization substance protein ASubName: Full=N utilization substance protein A; chromosome CDS1406517 1500 - 0.617333
nusB MCA1654 N utilization substance protein BRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS1757827 597 - 0.628141
nusG MCA1061 transcription antitermination protein NusGRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS1111530 534 + 0.558052
phoB MCA3105 DNA-binding response regulator PhoBSubName: Full=DNA-binding response regulator PhoB; chromosome CDS3292500 699 - 0.612303
ppk MCA1954 polyphosphate kinaseRecName: Full=Polyphosphate kinase; EC=2.7.4.1; AltName: Full=ATP-polyphosphate phosphotransferase; AltName: Full=Polyphosphoric acid kinase; chromosome CDS2104553 2358 - 0.613232
recG MCA2025 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS2173712 2076 + 0.651734
relA MCA1920 GTP pyrophosphokinaseSubName: Full=GTP pyrophosphokinase; EC=2.7.6.5; chromosome CDS2066195 2157 + 0.629578
rho MCA0056 transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS57326 1257 - 0.599045
rnc MCA1463 ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1554293 693 - 0.613276
rpoA MCA2347 DNA-directed RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS2540462 987 - 0.577508
rpoB MCA1066 DNA-directed RNA polymerase, beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS1114712 4077 + 0.607064
rpoC MCA1067 DNA-directed RNA polymerase, beta' subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS1118854 4203 + 0.620033
rpoD MCA2994 RNA polymerase sigma-70 factorRecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; chromosome CDS3166790 1800 + 0.593333
rpoE MCA1471 RNA polymerase sigma-30 factorRecName: Full=RNA polymerase sigma factor; chromosome CDS1561445 579 - 0.554404
rpoH MCA0136 RNA polymerase sigma-32 factorRecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; chromosome CDS140773 861 + 0.615563
rpoN MCA0741 RNA polymerase sigma-54 factorRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS780492 1464 - 0.60041
rpoZ MCA2022 DNA-directed RNA polymerase, omega subunitRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS2170789 282 + 0.595745
scpB MCA2206 segregation and condensation protein BSubName: Full=Segregation and condensation protein B; chromosome CDS2382587 606 - 0.671617
spoT MCA2023 guanosine-3,5-bis(diphosphate)3-pyrophosphohydro laseSubName: Full=Guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; EC=3.1.7.2; chromosome CDS2171099 2208 + 0.615489
vacB MCA1976 ribonuclease RRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS2125863 2268 - 0.628748