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2024-06-10 04:35:19

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome 1

Number of genes found: 25

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Photobacterium profundum, ss9
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PBPRA0625 putative peptide chain release factor RF-3SubName: Full=Putative peptide chain release factor RF-3; chromosome 1 CDS334426 978 + 0.443763
NA PBPRA0613 putative ribosome-binding factor ASubName: Full=Putative ribosome-binding factor A; chromosome 1 CDS322659 306 + 0.415033
NA PBPRA0612 putative initiation factor IF-2RecName: Full=Translation initiation factor IF-2; chromosome 1 CDS319736 2700 + 0.449259
NA PBPRA0626 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS335406 600 + 0.436667
NA PBPRA0570 putative lysyl-tRNA synthetaseRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; chromosome 1 CDS272589 1509 + 0.444003
BFL058 PBPRA0433 putative ribosomal protein S21RecName: Full=30S ribosomal protein S21; chromosome 1 CDS100166 216 - 0.490741
C3920 PBPRA0616 putative polyribonucleotide nucleotidyltransferaseRecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; chromosome 1 CDS324638 2124 + 0.454802
EBIG1690 PBPRA0614 putative tRNA pseudouridine 5S synthaseRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome 1 CDS322964 951 + 0.435331
ECS0029 PBPRA0591 putative Isoleucyl-tRNA synthetaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome 1 CDS295350 2865 + 0.449564
ECS3853 PBPRA0489 hypothetical Tn5 transposaseSubName: Full=Hypothetical Tn5 transposase; chromosome 1 CDS170876 330 + 0.415152
ECS3993 PBPRA0470 Putative translation initiation inhibitorSubName: Full=Putative translation initiation inhibitor; chromosome 1 CDS146517 387 - 0.413437
ECS5235 PBPRA0483 putative Valyl-tRNA synthetaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome 1 CDS162404 2937 - 0.446033
HD0203 PBPRA0394 putative Ribosomal protein L21RecName: Full=50S ribosomal protein L21; chromosome 1 CDS49366 312 + 0.458333
PA0668 PBPRA0533 putative tyrosyl-tRNA synthetaseRecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; chromosome 1 CDS219977 1188 + 0.425084
PLU0589 PBPRA0587 putative ribosomal protein S20RecName: Full=30S ribosomal protein S20; chromosome 1 CDS292292 294 - 0.421769
PLU3549 PBPRA0569 putative peptide chain release factor 2RecName: Full=Peptide chain release factor 2; Short=RF-2; chromosome 1 CDS271492 1062 + 0.454802
PLU4536 PBPRA0603 23S rRNA methylaseRecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; chromosome 1 CDS311743 630 + 0.428571
RLUA PBPRA0408 putative ribosomal large subunit pseudouridine synthase ARecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome 1 CDS63389 720 - 0.45
RPMA PBPRA0395 putative Ribosomal protein L27RecName: Full=50S ribosomal protein L27; chromosome 1 CDS49697 258 + 0.437984
RPS15 PBPRA0615 putative ribosomal protein S15RecName: Full=30S ribosomal protein S15; chromosome 1 CDS324083 270 + 0.451852
SF0048 PBPRA0402 putative dimethyladenosine transferaseRecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; chromosome 1 CDS55660 861 - 0.447154
SF3097 PBPRA0439 putative tRNA nucleotidyltransferaseRecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2-nucleotidase; EC=3.1.3.-; Includes: RecName: Full=2,3-cyclic phosphodiesterase; EC=3.1.4.-; Includes: RecName: Full=Phosphatase; EC=3.1.3.-; chromosome 1 CDS104369 1236 - 0.461974
STY2836 PBPRA0562 putative ATP-dependent RNA helicase SrmBRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome 1 CDS262822 1260 - 0.443651
YPO0427 PBPRA0527 hypothetical 16S RNA G1207 methylase RsmCRecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; chromosome 1 CDS212508 1020 - 0.412745
YPO3504 PBPRA0602 putative RNA-binding proteinSubName: Full=Putative RNA-binding protein; chromosome 1 CDS311307 333 - 0.381381