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2024-06-01 19:33:06

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 110

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Onion yellows phytoplasma OY-M, onion yellows
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PAM338 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS384618 375 - 0.258667
NA PAM183 conserved hypothetical proteinRecName: Full=Ribosome-binding ATPase YchF; chromosome CDS216815 1092 + 0.317766
NA PAM087 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS109844 336 + 0.279762
NA PAM103 cytosine/adenosine deaminaseSubName: Full=Cytosine/adenosine deaminase; chromosome CDS128672 486 - 0.31893
NA PAM003 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4447 420 + 0.228571
NA PAM012 exopolyphosphatase-related proteinRecName: Full=50S ribosomal protein L9; chromosome CDS13316 2574 + 0.29526
NA PAM412 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS458035 318 - 0.220126
GRS1 PAM626 glycyl-tRNA synthetase, class IIRecName: Full=Glycine--tRNA ligase; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase; chromosome CDS716670 1359 + 0.356144
alaS PAM305 alanyl-tRNA synthetaseRecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; chromosome CDS347381 2595 - 0.322929
argS PAM455 arginyl-tRNA synthetaseSubName: Full=Arginyl-tRNA synthetase; chromosome CDS512605 1674 + 0.27718
asnS PAM754 aspartyl/asparaginyl-tRNA synthetaseRecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; chromosome CDS858081 1521 - 0.314924
aspS PAM128 aspartyl-tRNA synthetaseRecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; chromosome CDS152425 1761 + 0.321408
cysS PAM141 cysteinyl-tRNA synthetaseRecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; chromosome CDS165715 1317 + 0.287775
efp PAM276 translation elongation factor EF-PRecName: Full=Elongation factor P; Short=EF-P; chromosome CDS317585 570 + 0.280702
frr PAM168 ribosome recycling factorRecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; chromosome CDS199169 555 + 0.322523
fusA PAM264 translation elongation factor EF-GRecName: Full=Elongation factor G; Short=EF-G; chromosome CDS302934 2067 + 0.371553
glnS PAM620 glutamyl-and glutaminyl-tRNA synthetaseSubName: Full=Glutamyl-and glutaminyl-tRNA synthetase; chromosome CDS709398 1815 + 0.341598
glnS PAM140 glutamyl-and glutaminyl-tRNA synthetaseRecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; chromosome CDS164200 1350 + 0.322963
hisS PAM127 histidyl-tRNA synthetaseRecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; chromosome CDS151153 1269 + 0.322301
ileS PAM184 isoleucyl-tRNA synthetaseRecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; chromosome CDS218019 2703 + 0.318535
infA PAM223 translation initiation factor IF-1RecName: Full=Translation initiation factor IF-1; chromosome CDS254967 237 + 0.295359
infB PAM150 translation initiation factor 2RecName: Full=Translation initiation factor IF-2; chromosome CDS176528 1860 + 0.338172
infC PAM744 translation initiation factor IF3SubName: Full=Translation initiation factor IF3; chromosome CDS846266 453 - 0.300221
ksgA PAM306 dimethyladenosine transferaseSubName: Full=Dimethyladenosine transferase; chromosome CDS350438 1368 + 0.271199
ksgA PAM731 dimethyladenosine transferaseRecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; chromosome CDS832877 807 + 0.263941
leuS PAM738 leucyl-tRNA synthetaseRecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; chromosome CDS840400 2466 - 0.328467
lysU PAM589 lysyl-tRNA synthetase class IIRecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; chromosome CDS670622 1536 + 0.336589
map PAM222 methionine aminopeptidaseRecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; chromosome CDS254148 744 + 0.34543
metG PAM233 methionyl-tRNA synthetaseRecName: Full=Methionine--tRNA ligase; EC=6.1.1.10; AltName: Full=Methionyl-tRNA synthetase; chromosome CDS261149 1563 + 0.325016
miaA PAM275 tRNA delta(2)-isopentenylpyrophosphate transferaseRecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; chromosome CDS316651 876 + 0.295662
pcnB PAM102 tRNA nucleotidyltransferase/polyA polymeraseSubName: Full=tRNA nucleotidyltransferase/polyA polymerase; chromosome CDS127074 1239 - 0.297014
pheS PAM596 phenylalanyl-tRNA synthetase alpha subunitRecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; chromosome CDS680030 1035 + 0.336232
pheT PAM598 phenylalanyl-tRNA synthetase beta subunitRecName: Full=Phenylalanine--tRNA ligase beta subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase beta subunit; Short=PheRS; chromosome CDS681568 1929 + 0.313634
pnp PAM251 polyribonucleotide nucleotidyltransferaseRecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; chromosome CDS284635 2148 + 0.358007
prfA PAM014 protein chain release factor ARecName: Full=Peptide chain release factor 1; Short=RF-1; chromosome CDS17300 1056 + 0.324811
prfB PAM473 protein chain release factor BSubName: Full=Protein chain release factor B; chromosome CDS536618 1110 - 0.297297
proS PAM246 prolyl-tRNA synthetaseRecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; chromosome CDS274923 1425 + 0.337544
pth PAM152 peptidyl-tRNA hydrolaseRecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; chromosome CDS179034 567 + 0.268078
rbfA PAM151 ribosome-binding factor ASubName: Full=Ribosome-binding factor A; chromosome CDS178391 342 + 0.24269
rluA PAM131 pseudouridylate synthasesRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome CDS157887 912 + 0.320175
rnpA PAM248 ribonuclease PRecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; chromosome CDS276812 426 + 0.260563
rplA PAM257 ribosomal protein L1RecName: Full=50S ribosomal protein L1; chromosome CDS292157 726 + 0.338843
rplB PAM203 ribosomal protein L2RecName: Full=50S ribosomal protein L2; chromosome CDS244862 831 + 0.386282
rplC PAM200 ribosomal protein L3RecName: Full=50S ribosomal protein L3; chromosome CDS243429 474 + 0.35865
rplD PAM201 ribosomal protein L4RecName: Full=50S ribosomal protein L4; chromosome CDS243889 624 + 0.352564
rplE PAM212 ribosomal protein L5RecName: Full=50S ribosomal protein L5; chromosome CDS248866 546 + 0.342491
rplF PAM215 ribosomal protein L6RecName: Full=50S ribosomal protein L6; chromosome CDS250156 555 + 0.351351
rplJ PAM258 ribosomal protein L10RecName: Full=50S ribosomal protein L10; chromosome CDS292922 510 + 0.319608
rplK PAM256 ribosomal protein L11RecName: Full=50S ribosomal protein L11; chromosome CDS291671 426 + 0.35446
rplL PAM259 ribosomal protein L7/L12RecName: Full=50S ribosomal protein L7/L12; chromosome CDS293443 411 + 0.333333
rplM PAM138 ribosomal protein L13RecName: Full=50S ribosomal protein L13; chromosome CDS163245 459 + 0.342048
rplM PAM142 ribosomal protein L13SubName: Full=Uridine kinase; chromosome CDS167203 1641 + 0.279707
rplN PAM210 ribosomal protein L14RecName: Full=50S ribosomal protein L14; chromosome CDS248127 363 + 0.330579
rplO PAM219 ribosomal protein L15RecName: Full=50S ribosomal protein L15; chromosome CDS251855 381 + 0.364829
rplP PAM207 ribosomal protein L16/L10ERecName: Full=50S ribosomal protein L16; chromosome CDS247112 423 + 0.368794
rplQ PAM228 ribosomal protein L17RecName: Full=50S ribosomal protein L17; chromosome CDS257206 357 + 0.308123
rplR PAM216 ribosomal protein L18RecName: Full=50S ribosomal protein L18; chromosome CDS250720 354 + 0.367232
rplS PAM470 ribosomal protein L19RecName: Full=50S ribosomal protein L19; chromosome CDS534718 357 - 0.330532
rplT PAM742 ribosomal protein L20RecName: Full=50S ribosomal protein L20; chromosome CDS845289 624 - 0.338141
rplU PAM086 ribosomal protein L21RecName: Full=50S ribosomal protein L21; chromosome CDS109503 336 + 0.330357
rplV PAM205 ribosomal protein L22RecName: Full=50S ribosomal protein L22; chromosome CDS246003 390 + 0.34359
rplW PAM202 ribosomal protein L23RecName: Full=50S ribosomal protein L23; chromosome CDS244512 291 + 0.281787
rplX PAM211 ribosomal protein L24RecName: Full=50S ribosomal protein L24; chromosome CDS248611 240 + 0.354167
rpmA PAM088 ribosomal protein L27RecName: Full=50S ribosomal protein L27; chromosome CDS110181 279 + 0.351254
rpmB PAM106 ribosomal protein L28RecName: Full=50S ribosomal protein L28; chromosome CDS130471 189 - 0.365079
rpmC PAM208 ribosomal protein L29SubName: Full=Ribosomal protein L29; chromosome CDS247531 321 + 0.342679
rpmD PAM218 ribosomal protein L30/L7ERecName: Full=50S ribosomal protein L30; chromosome CDS251600 198 + 0.308081
rpmE PAM105 ribosomal protein L31RecName: Full=50S ribosomal protein L31; chromosome CDS129965 282 - 0.35461
rpmF PAM198 ribosomal protein L32RecName: Full=50S ribosomal protein L32; chromosome CDS241162 207 + 0.323671
rpmG PAM253 ribosomal protein L33RecName: Full=50S ribosomal protein L33; chromosome CDS290245 186 + 0.27957
rpmG PAM244 ribosomal protein L33RecName: Full=50S ribosomal protein L33; chromosome CDS272498 150 + 0.28
rpmH PAM247 ribosomal protein L34RecName: Full=50S ribosomal protein L34; chromosome CDS276574 135 + 0.355556
rpmI PAM743 ribosomal protein L35RecName: Full=50S ribosomal protein L35; chromosome CDS845927 207 - 0.318841
rpmJ PAM224 ribosomal protein L36RecName: Full=50S ribosomal protein L36; chromosome CDS255216 117 + 0.316239
rpsB PAM165 ribosomal protein S2RecName: Full=30S ribosomal protein S2; chromosome CDS196610 816 + 0.349265
rpsC PAM206 ribosomal protein S3RecName: Full=30S ribosomal protein S3; chromosome CDS246376 759 + 0.362319
rpsD PAM586 ribosomal protein S4 and related proteinRecName: Full=30S ribosomal protein S4; chromosome CDS665484 450 - 0.297778
rpsE PAM217 ribosomal protein S5RecName: Full=30S ribosomal protein S5; chromosome CDS251088 516 + 0.339147
rpsF PAM009 ribosomal protein S6RecName: Full=30S ribosomal protein S6; chromosome CDS12171 339 + 0.262537
rpsG PAM263 ribosomal protein S7RecName: Full=30S ribosomal protein S7; chromosome CDS302439 471 + 0.356688
rpsH PAM214 ribosomal protein S8RecName: Full=30S ribosomal protein S8; chromosome CDS249717 393 + 0.340967
rpsI PAM139 ribosomal protein S9RecName: Full=30S ribosomal protein S9; chromosome CDS163708 393 + 0.358779
rpsJ PAM199 ribosomal protein S10RecName: Full=30S ribosomal protein S10; chromosome CDS242717 324 + 0.296296
rpsK PAM226 ribosomal protein S11RecName: Full=30S ribosomal protein S11; chromosome CDS255752 387 + 0.405685
rpsL PAM262 ribosomal protein S12RecName: Full=30S ribosomal protein S12; chromosome CDS301931 420 + 0.4
rpsM PAM225 ribosomal protein S13RecName: Full=30S ribosomal protein S13; chromosome CDS255345 366 + 0.333333
rpsN PAM213 ribosomal protein S14RecName: Full=30S ribosomal protein S14; chromosome CDS249426 270 + 0.359259
rpsO PAM136 ribosomal protein S15P/S13ERecName: Full=30S ribosomal protein S15; chromosome CDS161971 225 + 0.28
rpsP PAM472 ribosomal protein S16RecName: Full=30S ribosomal protein S16; chromosome CDS535904 264 - 0.287879
rpsQ PAM209 ribosomal protein S17RecName: Full=30S ribosomal protein S17; chromosome CDS247851 264 + 0.310606
rpsR PAM011 ribosomal protein S18RecName: Full=30S ribosomal protein S18; chromosome CDS13006 240 + 0.279167
rpsS PAM204 ribosomal protein S19RecName: Full=30S ribosomal protein S19; chromosome CDS245705 282 + 0.343972
rpsT PAM081 ribosomal protein S20RecName: Full=30S ribosomal protein S20; chromosome CDS105231 261 + 0.272031
rpsU PAM623 ribosomal protein S21RecName: Full=30S ribosomal protein S21; chromosome CDS714724 174 + 0.356322
rsuA PAM238 16S rRNA pseudouridylate synthaseRecName: Full=Pseudouridine synthase; EC=5.4.99.-; chromosome CDS266482 738 + 0.303523
serS PAM083 seryl-tRNA synthetaseRecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; chromosome CDS106430 1275 + 0.323137
spoU PAM144 rRNA methylaseSubName: Full=rRNA methylase; chromosome CDS170667 705 + 0.302128
srmB PAM453 superfamily II DNA and RNA helicaseSubName: Full=Superfamily II DNA and RNA helicase; chromosome CDS509237 1074 + 0.285847
srmB PAM714 superfamily II DNA and RNA helicaseSubName: Full=Superfamily II DNA and RNA helicase; chromosome CDS814483 1659 + 0.303195
sua5 PAM015 translation factorSubName: Full=Translation factor; chromosome CDS18448 558 + 0.292115
thrS PAM745 threonyl-tRNA synthetaseSubName: Full=Threonyl-tRNA synthetase; chromosome CDS847449 927 - 0.350593
trmD PAM471 tRNA-(guanine-N1)-methyltransferaseRecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; chromosome CDS535116 729 - 0.304527
trmU PAM125 tRNA(5-methylaminomethyl-2-thiouridylate)methylt ransferaseRecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; chromosome CDS147401 1137 + 0.328936
trpS PAM466 tryptophanyl-tRNA synthetaseRecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; chromosome CDS530461 1038 + 0.280347
truA PAM229 pseudouridylate synthaseRecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; chromosome CDS257734 732 + 0.300546
truB PAM237 pseudouridine synthaseRecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; chromosome CDS265512 852 + 0.298122
tsf PAM166 translation elongation factor TsRecName: Full=Elongation factor Ts; Short=EF-Ts; chromosome CDS197515 837 + 0.333333
tufB PAM265 translation elongation factor EF-TuRecName: Full=Elongation factor Tu; Short=EF-Tu; chromosome CDS305131 1185 + 0.374684
tyrS PAM469 tyrosyl-tRNA synthetaseRecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; chromosome CDS533292 1242 - 0.282609
valS PAM018 valyl-tRNA synthetaseRecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; chromosome CDS21671 2043 + 0.301517