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2024-06-10 06:15:18

Gene list

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COG category: Lipid transport and metabolism
Genomic element: chromosome

Number of genes found: 109

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0075 AMP-binding family protein chromosome CDS87148 1707 + 0.496778
SO0123 acyltransferase family proteinSubName: Full=Acyltransferase family protein; chromosome CDS132352 561 - 0.490196
SO0194 acyltransferase family proteinSubName: Full=Bifunctional lysophospholipid transporter-2-acyl glycerophosphoethanolamine acyl transferase/acyl ACP synthetase; EC=6.2.1.20; chromosome CDS203016 1863 + 0.47504
SO0197 fatty acid desaturase, family 1SubName: Full=Fatty acid desaturase Ole1; EC=1.14.19.1; chromosome CDS207241 1107 - 0.455285
SO0347 acyltransferase family protein chromosome CDS353751 909 - 0.476348
SO0348 acyltransferase family proteinSubName: Full=Phospholipid/glycerol acyltransferase family protein; chromosome CDS354700 903 - 0.447398
SO0355 AMP-binding proteinSubName: Full=AMP-dependent synthetase and ligase family protein; chromosome CDS362346 1665 - 0.488288
SO0438 oxidoreductase, short chain dehydrogenase/reductase familySubName: Full=Oxidoreductase short chain dehydrogenase/reductase family; chromosome CDS463857 804 + 0.506219
SO0496 conserved hypothetical proteinSubName: Full=Glutathione synthetase ATP-binding domain-like superfamily protein; chromosome CDS520371 924 - 0.361472
SO0559 MaoC domain proteinSubName: Full=MaoC domain protein; chromosome CDS579229 831 + 0.481348
SO0572 enoyl-CoA hydratase/isomerase family proteinSubName: Full=Enoyl-CoA hydratase/isomerase family protein; chromosome CDS592180 807 + 0.468401
SO0616 esterase, putativeSubName: Full=Lipase/esterase; chromosome CDS642233 912 + 0.470395
SO0772 oxidoreductase, short chain dehydrogenase/reductase familySubName: Full=Dihydrofolate reductase FolM; EC=1.5.1.3; chromosome CDS785081 720 + 0.481944
SO0789 conserved hypothetical proteinSubName: Full=Short-chain dehydrogenase/reductase family protein; chromosome CDS803222 618 - 0.475728
SO0801 conserved hypothetical proteinSubName: Full=Esterase/lipase/thioesterase domain protein; chromosome CDS813428 915 - 0.535519
SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylaseSubName: Full=Acetyl-CoA carboxylase multifunctional enzyme AccADCB; EC=6.3.4.14; EC=6.4.1.2; chromosome CDS856575 4554 + 0.467721
SO1250 conserved hypothetical proteinSubName: Full=SCP-2 sterol transfer family protein; chromosome CDS1300789 531 + 0.487759
SO1391 conserved hypothetical proteinSubName: Full=Short chain fatty acids transporter AtoE; chromosome CDS1448280 1332 + 0.500751
SO1474 conserved hypothetical proteinSubName: Full=Lipid binding/transport family protein YfjG; chromosome CDS1539325 438 + 0.436073
SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family proteinSubName: Full=4-hydroxybenzoyl-CoA thioesterase family protein; chromosome CDS1553032 369 + 0.457995
SO1679 acyl-CoA dehydrogenase family proteinSubName: Full=2-methylbutanoyl-CoA dehydrogenase IvdC; EC=1.3.99.12; chromosome CDS1766172 1158 + 0.522453
SO1680 enoyl-CoA hydratase/isomerase family proteinSubName: Full=Enoyl-CoA hydratase IvdD; EC=4.2.1.17; chromosome CDS1767382 774 + 0.534884
SO1681 enoyl-CoA hydratase/isomerase family proteinSubName: Full=3-hydroxyisobutyryl-CoA hydrolase IvdE; EC=3.1.2.4; chromosome CDS1768155 1152 + 0.494792
SO1683 3-oxoacyl-(acyl-carrier-protein) reductase, putativeSubName: Full=3-hydroxyacyl-CoA dehydrogenase IvdG; EC=1.1.1.35; chromosome CDS1770317 759 + 0.496706
SO1742 conserved hypothetical proteinSubName: Full=Polyolefin biosynthetic pathway thiolase OleA; EC=2.3.1.180; chromosome CDS1821611 1050 + 0.512381
SO1744 AMP-binding proteinSubName: Full=Polyolefin biosynthetic pathway AMP transfer protein OleC; chromosome CDS1823773 1845 + 0.496477
SO1873 conserved hypothetical proteinSubName: Full=Short-chain dehydrogenases/reductases family protein; chromosome CDS1970320 606 - 0.405941
SO1891 3-oxoadipate CoA-succinyl transferase, beta subunitSubName: Full=Acetyl-CoA:acetoacetate-CoA transferase beta subunit LiuG; EC=2.8.3.8; chromosome CDS1987930 657 - 0.502283
SO1894 acetyl-CoA carboxylase, biotin carboxylase, putativeSubName: Full=Methylcrotonyl-CoA carboxylase biotin-binding subunit LiuD; EC=6.4.1.4; chromosome CDS1990428 2085 - 0.516067
SO1895 enoyl-CoA hydratase/isomerase family proteinSubName: Full=Methylglutaconyl-CoA hydratase LiuC; EC=4.2.1.18; chromosome CDS1992512 867 - 0.532872
SO1911 oxidoreductase, short chain dehydrogenase/reductase family chromosome CDS2009613 864 + 0.46875
SO1971 AMP-binding family proteinSubName: Full=AMP-dependent synthetase and ligase family protein; EC=6.2.1.2; chromosome CDS2075392 1737 + 0.466897
SO2024 hypothetical protein chromosome CDS2122778 1227 + 0.488998
SO2395 acyl-CoA dehydrogenase family proteinSubName: Full=Butyryl-CoA dehydrogenase AcdS; EC=1.3.8.1; chromosome CDS2498972 1758 - 0.472696
SO2397 oxidoreductase, short-chain dehydrogenase/reductase familySubName: Full=2,4-dienoyl-CoA reductase; EC=1.3.1.34; chromosome CDS2501539 828 - 0.493961
SO2492 oxidoreductase, acyl-CoA dehydrogenase familySubName: Full=Acyl-CoA dehydrogenase FadE1; chromosome CDS2615773 2280 - 0.476754
SO2524 phytase, putativeSubName: Full=Beta-propeller phytase PhyS; EC=3.1.3.8; chromosome CDS2650762 1986 + 0.482377
SO2536 oxidoreductase, acyl-CoA dehydrogenase familySubName: Full=Acyl-CoA dehydrogenase FadE2; chromosome CDS2663387 2448 + 0.48652
SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family proteinSubName: Full=4-hydroxybenzoyl-CoA thioesterase family protein; chromosome CDS2784575 432 + 0.462963
SO2768 acyl-CoA dehydrogenase family proteinSubName: Full=Acyl-CoA dehydrogenase; chromosome CDS2891056 1791 - 0.495254
SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family proteinSubName: Full=Acyl-CoA thioesterase YciA; EC=3.1.2.-; chromosome CDS2895188 480 - 0.470833
SO2813 oxidoreductase, short chain dehydrogenase/reductase family chromosome CDS2934468 765 - 0.494118
SO2853 3-oxoacyl-(acyl-carrier-protein) synthase III, putativeRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; chromosome CDS2976946 1065 + 0.464789
SO2935 oxidoreductase, short-chain dehydrogenase/reductase familySubName: Full=Oxidoreductase short-chain dehydrogenase/reductase family; chromosome CDS3071808 738 + 0.482385
SO3088 fatty oxidation complex, alpha subunit chromosome CDS3210691 2124 - 0.478343
SO3089 fatty oxidation complex, beta subunitRecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=ACSs; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Acyl-CoA ligase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; chromosome CDS3212814 1311 - 0.495042
SO3099 long-chain fatty acid transport protein, putativeSubName: Full=Outer membrane long-chain fatty acid receptor FadL family; chromosome CDS3225094 1323 + 0.454271
SO3263 3-oxoacyl-(acyl-carrier-protein) reductase, putative chromosome CDS3399505 768 + 0.445312
SO3265 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3401476 1239 + 0.454399
SO3382 oxidoreductase, short-chain dehydrogenase/reductase familySubName: Full=Oxidoreductase short-chain dehydrogenase/reductase family; chromosome CDS3520699 801 - 0.454432
SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putativeSubName: Full=CDP-diacylglycerol--serine O-phosphatidyltransferase PssA; EC=2.7.8.8; chromosome CDS3740684 810 - 0.445679
SO3807 sterol desaturase family proteinSubName: Full=Sterol desaturase family protein; chromosome CDS3960920 864 - 0.451389
SO3857 PAP2 family proteinSubName: Full=Phosphoesterase PA-phosphatase related protein; chromosome CDS4003008 528 - 0.473485
SO3908 enoyl-CoA hydratase/isomerase family proteinSubName: Full=Enoyl-CoA hydratase EchH; EC=4.2.1.17; chromosome CDS4055183 738 + 0.433604
SO4170 C-factor, putativeSubName: Full=Cell-cell signaling protein C-factor; chromosome CDS4343403 711 + 0.464135
SO4195 PAP2 family proteinSubName: Full=PAP2 family protein; chromosome CDS4363472 513 - 0.48538
SO4232 long-chain fatty acid transport proteinSubName: Full=Outer membrane long-chain fatty acid receptor FadL family; chromosome CDS4408573 1314 - 0.467276
SO4335 phosphatidylglycerophosphatase B, putativeSubName: Full=Phosphatidylglycerophosphatase B PgpB; EC=3.1.3.27; chromosome CDS4527624 783 + 0.471264
SO4359 outer membrane protein, putativeSubName: Full=Outer membrane protein MtrB family; chromosome CDS4553623 1971 - 0.38204
SO4367 acyltransferase family proteinSubName: Full=Acyltransferase family protein; chromosome CDS4562493 852 + 0.50939
SO4368 acyl carrier protein, putativeSubName: Full=Acyl carrier protein; chromosome CDS4563328 255 + 0.427451
SO4369 acyl carrier protein, putativeRecName: Full=Acyl carrier protein; Short=ACP; chromosome CDS4563592 249 + 0.441767
SO4371 conserved hypothetical proteinSubName: Full=AMP-dependent synthetase and ligase family protein; chromosome CDS4564385 1365 + 0.502564
SO4372 thioester dehydrase family proteinSubName: Full=Thioester dehydrase family protein; chromosome CDS4565742 375 + 0.530667
SO4380 3-oxoacyl-(acyl-carrier-protein) synthase II, putativeSubName: Full=Beta-ketoacyl synthase; chromosome CDS4575430 1218 + 0.536946
SO4381 thioester dehydrase family proteinSubName: Full=Thioester dehydrase family protein; chromosome CDS4576653 543 + 0.508287
SO4576 O-succinylbenzoic acid--CoA ligase, putative chromosome CDS4770745 1395 + 0.488889
accB acetyl-CoA carboxylase, biotin carboxyl carrier proteinSubName: Full=Acetyl-CoA carboxylase biotin carboxyl carrier protein AccB; EC=6.3.4.14; EC=6.4.1.2; chromosome CDS536017 459 - 0.505447
acpD acyl carrier protein phosphodiesteraseRecName: Full=FMN-dependent NADH-azoreductase; EC=1.7.-.-; AltName: Full=Azo-dye reductase; AltName: Full=FMN-dependent NADH-azo compound oxidoreductase; chromosome CDS4590257 597 - 0.477387
acpP acyl carrier proteinRecName: Full=Acyl carrier protein; Short=ACP; chromosome CDS2897778 234 - 0.42735
acpS holo-(acyl-carrier protein) synthaseRecName: Full=Holo-[acyl-carrier-protein] synthase; Short=Holo-ACP synthase; EC=2.7.8.7; AltName: Full=4-phosphopantetheinyl transferase AcpS; chromosome CDS1408200 384 + 0.510417
acs acetyl-coenzyme A synthetaseRecName: Full=Acetyl-coenzyme A synthetase; Short=AcCoA synthetase; Short=Acs; EC=6.2.1.1; AltName: Full=Acetate--CoA ligase; AltName: Full=Acyl-activating enzyme; chromosome CDS2861904 1953 + 0.504352
atoB acetyl-CoA acetyltransferaseSubName: Full=3-ketoacyl-CoA thiolase IvdA; EC=2.3.1.16; chromosome CDS1763183 1191 + 0.518052
atoD acetate CoA-transferase, subunit ASubName: Full=Acetyl-CoA:acetoacetate-CoA transferase alpha subunit LiuF; EC=2.8.3.8; chromosome CDS1988693 705 - 0.500709
cdsA phosphatidate cytidylyltransferase chromosome CDS1715524 765 + 0.475817
dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeraseRecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Short=DXP reductoisomerase; EC=1.1.1.267; AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase; chromosome CDS1716293 1191 + 0.497901
dxs deoxyxylulose-5-phosphate synthaseRecName: Full=1-deoxy-D-xylulose-5-phosphate synthase; EC=2.2.1.7; AltName: Full=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; chromosome CDS1601183 1869 - 0.501338
fabA 3-hydroxydecanoyl-(acyl-carrier-protein)dehydrat aseRecName: Full=3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; EC=4.2.1.59; AltName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA; AltName: Full=Beta-hydroxydecanoyl thioester dehydrase; AltName: Full=Trans-2-decenoyl-[acyl-carrier-protein] isomerase; EC=5.3.3.14; chromosome CDS1947497 516 - 0.437984
fabB 3-oxoacyl-(acyl-carrier-protein) synthase I chromosome CDS3191404 1212 - 0.475248
fabD malonyl CoA-acyl carrier protein transacylaseRecName: Full=Malonyl CoA-acyl carrier protein transacylase; EC=2.3.1.39; chromosome CDS2898931 927 - 0.489752
fabF-1 3-oxoacyl-(acyl-carrier-protein) synthase IIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; chromosome CDS2896330 1239 - 0.497982
fabF-2 3-oxoacyl-(acyl-carrier-protein) synthase IISubName: Full=3-oxoacyl-(Acyl-carrier-protein) synthase II FabF; EC=2.3.1.179; EC=2.3.1.41; chromosome CDS4578026 1263 + 0.534442
fabG-1 3-oxoacyl-(acyl-carrier-protein) reductaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase FabG; EC=1.1.1.100; chromosome CDS2898175 747 - 0.45917
fabG-2 3-oxoacyl-(acyl-carrier-protein) reductaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase FabG; EC=1.1.1.100; chromosome CDS4577300 726 + 0.526171
fabH-1 3-oxoacyl-(acyl-carrier-protein) synthase IIIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; Short=KAS III; chromosome CDS2899962 960 - 0.489583
fabH-2 3-oxoacyl-(acyl-carrier-protein) synthase III chromosome CDS3028125 1026 - 0.477583
fabZ (3R)-hydroxymyristoyl-(acyl-carrier-protein)dehy drataseRecName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; EC=4.2.1.59; AltName: Full=(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Short=(3R)-hydroxymyristoyl-ACP dehydrase; AltName: Full=Beta-hydroxyacyl-ACP dehydratase; chromosome CDS1723041 465 + 0.455914
fadA fatty oxidation complex, beta subunitRecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; chromosome CDS23307 1164 - 0.496564
fadB fatty oxidation complex, alpha subunitRecName: Full=Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; EC=4.2.1.17; EC=5.1.2.3; EC=5.3.3.8; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase; EC=1.1.1.35; chromosome CDS24493 2151 - 0.491399
fadD-1 long-chain-fatty-acid--CoA ligaseSubName: Full=Long chain fatty acid CoA ligase FadD; EC=6.2.1.3; chromosome CDS2707886 1674 - 0.454002
fadD-2 long-chain-fatty-acid--CoA ligaseSubName: Full=Long chain fatty acid CoA ligase FadD; EC=6.2.1.3; chromosome CDS3816560 1599 + 0.459037
garR 2-hydroxy-3-oxopropionate reductaseSubName: Full=2-hydroxy-3-oxopropionate reductase GarR; EC=1.1.1.60; chromosome CDS2894029 876 - 0.487443
ispD 4-diphosphocytidyl-2C-methyl-D-erythritolsynthas eRecName: Full=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; AltName: Full=4-diphosphocytidyl-2C-methyl-D-erythritol synthase; AltName: Full=MEP cytidylyltransferase; Short=MCT; chromosome CDS3582325 750 - 0.494667
ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinaseRecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Short=CMK; EC=2.7.1.148; AltName: Full=4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase; chromosome CDS3985657 855 + 0.501754
ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseRecName: Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Short=MECDP-synthase; Short=MECPP-synthase; Short=MECPS; EC=4.6.1.12; chromosome CDS3581793 480 - 0.510417
ispG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthaseRecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.17.7.1; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; chromosome CDS3463790 1116 - 0.491039
ivd isovaleryl-CoA dehydrogenaseSubName: Full=Isovaleryl-CoA dehydrogenase LiuA; EC=1.3.8.4; chromosome CDS1995149 1170 - 0.504274
lypA lysophospholipase L2SubName: Full=Lysophospholipase L2 LypA; EC=3.1.1.5; chromosome CDS4938680 990 + 0.465657
lytB penicillin tolerance protein LytBRecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; chromosome CDS3683909 957 - 0.45768
mmsB 3-hydroxyisobutyrate dehydrogenaseSubName: Full=3-hydroxyisobutyrate dehydrogenase IvdF; EC=1.1.1.31; chromosome CDS1769390 903 + 0.498339
pccB-1 3-methylcrotonyl CoA carboxylase, beta subunitSubName: Full=Methylcrotonyl-CoA carboxylase carboxyl transferase subunit LiuB; EC=6.4.1.4; chromosome CDS1993425 1608 - 0.534826
pgpA phosphatidylglycerophosphatase ARecName: Full=Phosphatidylglycerophosphatase A; EC=3.1.3.27; AltName: Full=Phosphatidylglycerolphosphate phosphatase A; chromosome CDS3609773 495 - 0.470707
pgsA CDP-diacylglycerol--glycerol-3-phosphate3-phosph atidyltransferaseSubName: Full=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA; EC=2.7.8.5; chromosome CDS1954433 549 + 0.453552
plsB glycerol-3-phosphate acyltransferaseRecName: Full=Glycerol-3-phosphate acyltransferase; Short=GPAT; EC=2.3.1.15; chromosome CDS4796591 2430 - 0.456379
plsC 1-acyl-sn-glycerol-3-phosphate acyltransferaseSubName: Full=1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC; EC=2.3.1.51; chromosome CDS588370 744 + 0.458333
plsX fatty acid/phospholipid synthesis protein PlsXRecName: Full=Phosphate acyltransferase; EC=2.3.1.n2; AltName: Full=Acyl-ACP phosphotransacylase; AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase; AltName: Full=Phosphate-acyl-ACP acyltransferase; chromosome CDS2900931 1029 - 0.471331
pssA CDP-diacylglycerol--serineO-phosphatidyltransferaseSubName: Full=Phosphatidylserine synthase PssA; EC=2.7.8.8; chromosome CDS2493871 1314 - 0.461187
tesB acyl-CoA thioesterase IISubName: Full=Acyl-CoA thioesterase II TesB; EC=3.1.2.-; chromosome CDS2010600 867 + 0.478662
uppS undecaprenyl diphosphate synthaseRecName: Full=Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); EC=2.5.1.31; AltName: Full=Ditrans,polycis-undecaprenylcistransferase; AltName: Full=Undecaprenyl diphosphate synthase; Short=UDS; AltName: Full=Undecaprenyl pyrophosphate synthase; Short=UPP synthase; chromosome CDS1714583 828 + 0.469807