Gene list
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COG category: Lipid transport and metabolism
Genomic element: chromosome 1
Number of genes found: 78
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| Photobacterium profundum, ss9 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | PBPRA2048 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 2365430 | 363 | + | 0.322314 |
| NA | PBPRA3372 | putative Phosphatidylserine decarboxylase | RecName: Full=Phosphatidylserine decarboxylase proenzyme; EC=4.1.1.65; Contains: RecName: Full=Phosphatidylserine decarboxylase alpha chain; Contains: RecName: Full=Phosphatidylserine decarboxylase beta chain; | chromosome 1 | CDS | 3812224 | 876 | + | 0.439498 |
| NA | PBPRA1645 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1874783 | 624 | + | 0.342949 |
| NA | PBPRA1192 | putative fatty acid/phospholipid synthesisprotein PlsX | RecName: Full=Phosphate acyltransferase; EC=2.3.1.n2; AltName: Full=Acyl-ACP phosphotransacylase; AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase; AltName: Full=Phosphate-acyl-ACP acyltransferase; | chromosome 1 | CDS | 1341322 | 1026 | + | 0.426901 |
| NA | PBPRA2964 | putative undecaprenyl diphosphate synthase | RecName: Full=Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); EC=2.5.1.31; AltName: Full=Ditrans,polycis-undecaprenylcistransferase; AltName: Full=Undecaprenyl diphosphate synthase; Short=UDS; AltName: Full=Undecaprenyl pyrophosphate synthase; Short=UPP synthase; | chromosome 1 | CDS | 3398130 | 765 | - | 0.436601 |
| NA | PBPRA1524 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1725751 | 291 | - | 0.343643 |
| NA | PBPRA2203 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 2535767 | 771 | - | 0.322957 |
| NA | PBPRA0805 | putative deoxyxylulose-5-phosphate synthase | RecName: Full=1-deoxy-D-xylulose-5-phosphate synthase; EC=2.2.1.7; AltName: Full=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; | chromosome 1 | CDS | 891999 | 1863 | - | 0.442834 |
| NA | PBPRA2962 | putative 1-deoxy-D-xylulose 5-phosphatereductoisomerase | RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Short=DXP reductoisomerase; EC=1.1.1.267; AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase; | chromosome 1 | CDS | 3395913 | 1194 | - | 0.452261 |
| NA | PBPRA1293 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1465223 | 1518 | + | 0.392622 |
| ACPD | PBPRA1958 | putative acyl carrier protein phosphodiesterase | RecName: Full=FMN-dependent NADH-azoreductase 1; EC=1.7.-.-; AltName: Full=Azo-dye reductase 1; AltName: Full=FMN-dependent NADH-azo compound oxidoreductase 1; | chromosome 1 | CDS | 2254826 | 594 | + | 0.410774 |
| ACS | PBPRA3403 | putative acetyl-CoA synthase | RecName: Full=Acetyl-coenzyme A synthetase; Short=AcCoA synthetase; Short=Acs; EC=6.2.1.1; AltName: Full=Acetate--CoA ligase; AltName: Full=Acyl-activating enzyme; | chromosome 1 | CDS | 3853584 | 1950 | + | 0.470256 |
| ATU3591 | PBPRA2818 | hypothetical oxidoreductase, short-chain dehydrogenase/reductase family | SubName: Full=Hypothetical oxidoreductase, short-chain dehydrogenase/reductase family; | chromosome 1 | CDS | 3265857 | 828 | - | 0.442029 |
| BB3755 | PBPRA1196 | putative acyl carrier protein | RecName: Full=Acyl carrier protein; Short=ACP; | chromosome 1 | CDS | 1345302 | 237 | + | 0.409283 |
| BLL7506 | PBPRA1979 | hypothetical Lysophospholipase | SubName: Full=Hypothetical Lysophospholipase; | chromosome 1 | CDS | 2275237 | 669 | - | 0.387145 |
| BP2097 | PBPRA1878 | putative lipase/esterase protein | SubName: Full=Putative lipase/esterase protein; | chromosome 1 | CDS | 2162713 | 936 | - | 0.424145 |
| BT4646 | PBPRA2948 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 3379030 | 189 | + | 0.349206 |
| C0223 | PBPRA2952 | putative Acetyl-CoA carboxylase alpha subunit | RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Short=ACCase subunit alpha; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha; EC=6.4.1.2; | chromosome 1 | CDS | 3382697 | 960 | - | 0.445833 |
| C2861 | PBPRA2652 | putative acetyl-CoA carboxylase, carboxyl transferase beta subunit | RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Short=ACCase subunit beta; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta; EC=6.4.1.2; | chromosome 1 | CDS | 3070593 | 924 | - | 0.438312 |
| C2886 | PBPRA0962 | putative fatty oxidation complex, alpha subunit | RecName: Full=Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; EC=4.2.1.17; EC=5.1.2.3; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase; EC=1.1.1.35; | chromosome 1 | CDS | 1062596 | 2148 | + | 0.44879 |
| C3110 | PBPRA3448 | putative phosphatidylserine synthase | SubName: Full=Putative phosphatidylserine synthase; | chromosome 1 | CDS | 3897756 | 1350 | + | 0.373333 |
| C4793 | PBPRA0064 | Putative fatty oxidation complex, alpha subunit | RecName: Full=Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; EC=4.2.1.17; EC=5.1.2.3; EC=5.3.3.8; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase; EC=1.1.1.35; | chromosome 1 | CDS | 63779 | 2163 | - | 0.449376 |
| ECS0471 | PBPRA0803 | Putative phosphatidylglycerophosphatase A | RecName: Full=Phosphatidylglycerophosphatase A; EC=3.1.3.27; AltName: Full=Phosphatidylglycerolphosphate phosphatase A; | chromosome 1 | CDS | 889115 | 486 | + | 0.427984 |
| FABB | PBPRA2658 | putative 3-oxoacyl-[acyl-carrier-protein] synthase I | SubName: Full=Putative 3-oxoacyl-[acyl-carrier-protein] synthase I; | chromosome 1 | CDS | 3081183 | 1215 | - | 0.454321 |
| FABF-1 | PBPRA1197 | Beta-ketoacyl-acyl carrier protein synthase II | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; | chromosome 1 | CDS | 1345623 | 1242 | + | 0.454106 |
| FABG | PBPRA1195 | Putative 3-oxoacyl-(acyl-carrier-protein) reductase, FabG | SubName: Full=Putative 3-oxoacyl-(Acyl-carrier-protein) reductase, FabG; | chromosome 1 | CDS | 1344408 | 735 | + | 0.440816 |
| FABG-9 | PBPRA1829 | hypothetical oxidoreductase, short chaindehydrogenase/reductase family | SubName: Full=Hypothetical oxidoreductase, short chaindehydrogenase/reductase family; | chromosome 1 | CDS | 2111853 | 756 | + | 0.402116 |
| FABH | PBPRA1193 | Putative 3-oxoacyl-(acyl-carrier-protein)synthase III | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; | chromosome 1 | CDS | 1342353 | 957 | + | 0.440961 |
| FADA | PBPRA0063 | Putative Acetyl-CoA acetyltransferase | RecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; | chromosome 1 | CDS | 62599 | 1164 | - | 0.47079 |
| FADD | PBPRA1075 | putative long-chain-fatty-acid-CoA ligase | SubName: Full=Putative long-chain-fatty-acid-CoA ligase; | chromosome 1 | CDS | 1193351 | 1692 | + | 0.429669 |
| HD0634 | PBPRA3405 | putative acetyl-CoA carboxylase, biotin carboxyl carrier protein | SubName: Full=Putative acetyl-CoA carboxylase, biotin carboxyl carrier protein; | chromosome 1 | CDS | 3856818 | 459 | + | 0.459695 |
| HD1188 | PBPRA2957 | 3R-hydroxymyristoyl-acyl-carrier-proteindehydrat ase | RecName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; EC=4.2.1.59; AltName: Full=(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Short=(3R)-hydroxymyristoyl-ACP dehydrase; AltName: Full=Beta-hydroxyacyl-ACP dehydratase; | chromosome 1 | CDS | 3389888 | 453 | - | 0.395143 |
| HD1193 | PBPRA2963 | putative phosphatidate cytidylyltransferase | RecName: Full=Phosphatidate cytidylyltransferase; EC=2.7.7.41; | chromosome 1 | CDS | 3397169 | 849 | - | 0.424028 |
| MVAD | PBPRA0469 | hypothetical isopentenyldiphosphate isomerase | RecName: Full=Isopentenyl-diphosphate Delta-isomerase; Short=IPP isomerase; EC=5.3.3.2; AltName: Full=IPP:DMAPP isomerase; AltName: Full=Isopentenyl pyrophosphate isomerase; | chromosome 1 | CDS | 493585 | 543 | + | 0.443831 |
| MW0603 | PBPRA2685 | putative glycerol-3-phosphatecytidyltransferase | SubName: Full=Putative glycerol-3-phosphatecytidyltransferase; | chromosome 1 | CDS | 3115342 | 420 | - | 0.309524 |
| OB0669 | PBPRA1287 | hypothetical long-chain-fatty-acid-CoAligase | SubName: Full=Hypothetical long-chain-fatty-acid-CoAligase; | chromosome 1 | CDS | 1458124 | 1548 | - | 0.412145 |
| PD0832 | PBPRA1462 | 3-oxoacyl-acyl carrier protein synthase III | SubName: Full=3-oxoacyl-acyl carrier protein synthase III; | chromosome 1 | CDS | 1653516 | 1035 | + | 0.445411 |
| PG1355 | PBPRA1631 | Hypothetical acyltransferase family protein | SubName: Full=Hypothetical acyltransferase family protein; | chromosome 1 | CDS | 1862896 | 570 | + | 0.405263 |
| PLU2026 | PBPRA2236 | putative CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase | SubName: Full=Putative CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; | chromosome 1 | CDS | 2573340 | 558 | - | 0.408602 |
| PLU2487 | PBPRA2513 | putative cardiolipin synthase | RecName: Full=Cardiolipin synthase A; Short=CL synthase; EC=2.7.8.-; | chromosome 1 | CDS | 2907239 | 1458 | + | 0.430041 |
| PLU3069 | PBPRA2621 | hypothetical o-succinylbenzoate-CoA ligase | SubName: Full=Hypothetical o-succinylbenzoate-CoA ligase; | chromosome 1 | CDS | 3034720 | 1437 | - | 0.459986 |
| PP1700 | PBPRA2620 | Hypothetical acyltransferase protein | SubName: Full=Hypothetical acyltransferase protein; | chromosome 1 | CDS | 3032775 | 1878 | + | 0.42066 |
| PP1893 | PBPRA2424 | putative oxidoreductase, acyl-CoA dehydrogenase family | SubName: Full=Putative oxidoreductase, acyl-CoA dehydrogenase family; | chromosome 1 | CDS | 2804574 | 2277 | - | 0.447519 |
| RS04419 | PBPRA2339 | hypothetical enoyl-CoA hydratase/isomerase | SubName: Full=Hypothetical enoyl-CoA hydratase/isomerase; | chromosome 1 | CDS | 2695892 | 777 | + | 0.43758 |
| RS04648 | PBPRA2214 | Hypothetical Acyl-CoA-binding protein | SubName: Full=Hypothetical Acyl-CoA-binding protein; | chromosome 1 | CDS | 2549117 | 267 | + | 0.419476 |
| S0028 | PBPRA0594 | putative LytB protein | RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; | chromosome 1 | CDS | 647366 | 942 | + | 0.453291 |
| S0292 | PBPRA2915 | putative oxidoreductase, acyl-CoA dehydrogenase family | SubName: Full=Putative oxidoreductase, acyl-CoA dehydrogenase family; | chromosome 1 | CDS | 3346324 | 2469 | + | 0.433374 |
| S1295 | PBPRA2848 | putative kinase, GHMP family | RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Short=CMK; EC=2.7.1.148; AltName: Full=4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase; | chromosome 1 | CDS | 3297769 | 891 | + | 0.439955 |
| S2798 | PBPRA3085 | putative phosphopantetheinyl transferase | RecName: Full=Holo-[acyl-carrier-protein] synthase; Short=Holo-ACP synthase; EC=2.7.8.7; AltName: Full=4-phosphopantetheinyl transferase AcpS; | chromosome 1 | CDS | 3527086 | 381 | - | 0.47769 |
| S3266 | PBPRA0468 | putative1-acyl-sn-glycerol-3-phosphateacyltransf erase | SubName: Full=Putative 1-acyl-sn-glycerol-3-phosphateacyltransferase; | chromosome 1 | CDS | 492691 | 726 | + | 0.428375 |
| S3511 | PBPRA3406 | putative acetyl-CoA carboxylase, biotin carboxylase | SubName: Full=Putative acetyl-CoA carboxylase, biotin carboxylase; | chromosome 1 | CDS | 3857289 | 1344 | + | 0.454613 |
| S3567 | PBPRA0164 | putative glycerol-3-phosphate acyltransferase | RecName: Full=Glycerol-3-phosphate acyltransferase; Short=GPAT; EC=2.3.1.15; | chromosome 1 | CDS | 166431 | 2466 | - | 0.428224 |
| SF0397 | PBPRA0973 | putative acyl-CoA thioesterase II | SubName: Full=Putative acyl-CoA thioesterase II; | chromosome 1 | CDS | 1077558 | 888 | - | 0.442568 |
| SF2420 | PBPRA0961 | putative fatty oxidation complex, beta subunit | RecName: Full=3-ketoacyl-CoA thiolase; EC=2.3.1.16; AltName: Full=ACSs; AltName: Full=Acetyl-CoA acyltransferase; AltName: Full=Acyl-CoA ligase; AltName: Full=Beta-ketothiolase; AltName: Full=Fatty acid oxidation complex subunit beta; | chromosome 1 | CDS | 1061286 | 1311 | + | 0.463768 |
| SF2561 | PBPRA0763 | putative gcpE protein | RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.17.7.1; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; | chromosome 1 | CDS | 842746 | 1122 | + | 0.428699 |
| SMC02134 | PBPRA2117 | putative phosphatidylglycerophosphate synthase | SubName: Full=Putative phosphatidylglycerophosphate synthase; | chromosome 1 | CDS | 2435864 | 630 | + | 0.426984 |
| SO1856 | PBPRA1773 | putative 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase | RecName: Full=3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; EC=4.2.1.59; AltName: Full=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA; AltName: Full=Beta-hydroxydecanoyl thioester dehydrase; AltName: Full=Trans-2-decenoyl-[acyl-carrier-protein] isomerase; EC=5.3.3.14; | chromosome 1 | CDS | 2045256 | 516 | - | 0.428295 |
| SO2777 | PBPRA1194 | putative malonyl Coa-acyl carrier protein transacylase | RecName: Full=Malonyl CoA-acyl carrier protein transacylase; EC=2.3.1.39; | chromosome 1 | CDS | 1343461 | 924 | + | 0.435065 |
| SO3437 | PBPRA3076 | putative 2C-methyl-D-erythritol2,4-cyclodiphosphate synthase MeCPs | RecName: Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Short=MECDP-synthase; Short=MECPP-synthase; Short=MECPS; EC=4.6.1.12; | chromosome 1 | CDS | 3514411 | 474 | - | 0.449367 |
| SSO2521 | PBPRA2526 | hypotetical protein similar to lipases | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 2927950 | 936 | - | 0.44765 |
| STM3273 | PBPRA0621 | putative lipid carrier protein | SubName: Full=Putative lipid carrier protein; | chromosome 1 | CDS | 680179 | 522 | + | 0.402299 |
| STY0669 | PBPRA2291 | hypothetical citX protein; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | SubName: Full=Hypothetical citX protein apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; | chromosome 1 | CDS | 2639675 | 528 | - | 0.399621 |
| STY2873 | PBPRA0691 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 767354 | 435 | + | 0.42069 |
| STY3430 | PBPRA2273 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome 1 | CDS | 2617611 | 888 | - | 0.448198 |
| T3336 | PBPRA0137 | putative lysophospholipase | SubName: Full=Putative lysophospholipase; | chromosome 1 | CDS | 138484 | 1005 | - | 0.429851 |
| TAGD1 | PBPRA2703 | Putative glycerol-3-phosphate cytidyltransferase | SubName: Full=Putative glycerol-3-phosphate cytidyltransferase; | chromosome 1 | CDS | 3135035 | 396 | - | 0.363636 |
| VP1562 | PBPRA1311 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome 1 | CDS | 1485575 | 261 | + | 0.386973 |
| VP2120 | PBPRA1104 | hypothetical oxidoreductase, short-chaindehydrogenase/reductase family | SubName: Full=Hypothetical oxidoreductase, short-chaindehydrogenase/reductase family; | chromosome 1 | CDS | 1225165 | 699 | - | 0.393419 |
| VVA0266 | PBPRA1902 | Hypothetical phosphatidylglycerophosphatase B | SubName: Full=Hypothetical phosphatidylglycerophosphatase B; | chromosome 1 | CDS | 2190008 | 720 | + | 0.416667 |
| VVA0906 | PBPRA2001 | Putative 3-oxoacyl-(acyl-carrier-protein) synthase III | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 3; EC=2.3.1.180; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase III; AltName: Full=Beta-ketoacyl-ACP synthase III; | chromosome 1 | CDS | 2304055 | 1077 | + | 0.439183 |
| XF2276 | PBPRA1464 | acyl-CoA ligase | SubName: Full=Acyl-CoA ligase; | chromosome 1 | CDS | 1655570 | 1758 | + | 0.436291 |
| Y1577 | PBPRA2573 | putative long-chain fatty acid transport protein | SubName: Full=Putative long-chain fatty acid transport protein; | chromosome 1 | CDS | 2978419 | 1248 | + | 0.459936 |
| Y1577 | PBPRA0958 | putative long-chain fatty acid transport protein | SubName: Full=Putative long-chain fatty acid transport protein; | chromosome 1 | CDS | 1057734 | 1251 | - | 0.426059 |
| Y2039 | PBPRA2507 | putative acyl-CoA hydrolase | SubName: Full=Putative acyl-CoA hydrolase; | chromosome 1 | CDS | 2902029 | 399 | + | 0.446115 |
| Y3641 | PBPRA0424 | putative long-chain-fatty-acid-CoAligase | SubName: Full=Putative long-chain-fatty-acid-CoAligase; | chromosome 1 | CDS | 435179 | 1815 | + | 0.433058 |
| YGBP | PBPRA3077 | putative 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase | RecName: Full=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; AltName: Full=4-diphosphocytidyl-2C-methyl-D-erythritol synthase; AltName: Full=MEP cytidylyltransferase; Short=MCT; | chromosome 1 | CDS | 3514890 | 705 | - | 0.466667 |
| YPO2215 | PBPRA2481 | putative oxidoreductase, short-chain dehydrogenase/reductase family | SubName: Full=Putative oxidoreductase, short-chain dehydrogenase/reductase family; | chromosome 1 | CDS | 2874413 | 744 | + | 0.446237 |
| YPO2744 | PBPRA0957 | putative long-chain fatty acid transport protein | SubName: Full=Putative long-chain fatty acid transport protein; | chromosome 1 | CDS | 1056086 | 1293 | - | 0.445476 |
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