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2024-06-01 17:07:26

Gene list

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COG category: Nucleotide transport and metabolism
Genomic element: chromosome

Number of genes found: 87

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Pseudomonas putida KT2440, KT2440
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PP3389 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3839075 1158 + 0.569948
NA PP2785 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3172493 1284 + 0.625389
NA PP4309 transporter, NCS1 nucleoside transporter familySubName: Full=Transporter, NCS1 nucleoside transporter family; chromosome CDS4900536 1533 + 0.641879
NA PP2188 tRNA-(ms(2)io(6)a)-hydroxylase, putativeSubName: Full=tRNA-(Ms(2)io(6)a)-hydroxylase, putative; chromosome CDS2494789 618 + 0.634304
NA PP3363 thymidylate kinase, putativeSubName: Full=Thymidylate kinase, putative; chromosome CDS3804538 618 - 0.595469
NA PP3967 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS4476426 441 + 0.560091
NA PP4035 transporter, NCS1 nucleoside transporter familySubName: Full=Transporter, NCS1 nucleoside transporter family; chromosome CDS4545852 1491 - 0.626425
NA PP3710 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4232328 462 - 0.517316
NA PP3992 xanthine/uracil permease family proteinSubName: Full=Xanthine/uracil permease family protein; chromosome CDS4502371 1380 + 0.623188
NA PP1842 glutamine amidotransferase, class ISubName: Full=Glutamine amidotransferase, class I; chromosome CDS2065524 735 + 0.608163
NA PP2744 ribose-phosphate pyrophosphokinase family proteinSubName: Full=Ribose-phosphate pyrophosphokinase family protein; chromosome CDS3126462 960 - 0.641667
NA PP1452 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS1659212 552 - 0.632246
NA PP2460 inosine-uridine preferring nucleoside hydrolaseSubName: Full=Inosine-uridine preferring nucleoside hydrolase; chromosome CDS2806624 969 + 0.648091
NA PP4290 xanthine/uracil permease family proteinSubName: Full=Xanthine/uracil permease family protein; chromosome CDS4880917 1356 + 0.628319
NA PP2102 deoxyguanosinetriphosphate triphosphohydrolase, putativeSubName: Full=Deoxyguanosinetriphosphate triphosphohydrolase, putative; chromosome CDS2400554 1332 - 0.63964
NA PP3254 nucleosidase, putativeSubName: Full=Nucleosidase, putative; chromosome CDS3688978 654 + 0.599388
NA PP1207 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1387145 420 + 0.583333
NA PP5036 chlorohydrolase family proteinSubName: Full=Chlorohydrolase family protein; chromosome CDS5739062 1365 + 0.67033
NA PP2995 DNA topology modulation kinase FlaR, putativeSubName: Full=DNA topology modulation kinase FlaR, putative; chromosome CDS3392212 543 + 0.604052
NA PP3238 transcriptional regulator PyrR, putativeSubName: Full=Transcriptional regulator PyrR, putative; chromosome CDS3673980 573 - 0.630017
NA PP3650 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS4145199 564 + 0.601064
NA PP3641 cytosine/purine/uracil/thiamine/allantoin permease family proteinSubName: Full=Cytosine/purine/uracil/thiamine/allantoin permease family protein; chromosome CDS4136778 1404 - 0.605413
NA PP3268 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS3702166 399 - 0.609023
NA PP4643 xanthine/uracil permease family proteinSubName: Full=Xanthine/uracil permease family protein; chromosome CDS5267413 1518 + 0.629776
NA PP3209 chlorohydrolase, putativeSubName: Full=Chlorohydrolase, putative; chromosome CDS3641771 1431 - 0.663173
NA PP0747 hypoxanthine phosphoribosyltransferase, putativeSubName: Full=Hypoxanthine phosphoribosyltransferase, putative; chromosome CDS865986 558 + 0.578853
NA PP4779 AMP nucleosidaseSubName: Full=AMP nucleosidase; chromosome CDS5439360 1551 - 0.629271
NA PP5100 Ham1 proteinRecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; chromosome CDS5822463 597 + 0.636516
NA PP3655 cytosine/purine/uracil/thiamine/allantoin permease family proteinSubName: Full=Cytosine/purine/uracil/thiamine/allantoin permease family protein; chromosome CDS4150394 1413 + 0.624204
NA PP4288 conserved hypothetical proteinRecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; chromosome CDS4878842 504 + 0.587302
NA PP4921 transporter, NCS1 nucleoside transporter familySubName: Full=Transporter, NCS1 nucleoside transporter family; chromosome CDS5592766 1284 - 0.647196
NA PP2584 chlorohydrolase family proteinSubName: Full=Chlorohydrolase family protein; chromosome CDS2949845 1398 - 0.647353
NA PP4999 dihydroorotase, multifunctional complex typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS5695268 1272 + 0.690252
NA PP0709 transporter, NCS1 nucleoside transporter familySubName: Full=Transporter, NCS1 nucleoside transporter family; chromosome CDS824615 1500 - 0.644667
PP0428 HIT family proteinSubName: Full=HIT family protein; chromosome CDS515805 339 - 0.563422
add PP0591 adenosine deaminaseRecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; Short=AAH; chromosome CDS689687 948 - 0.618143
adk PP1506 adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS1712263 651 + 0.611367
apt PP4266 adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS4851059 549 + 0.632058
carA PP4724 carbamoyl-phosphate synthase, small subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS5372031 1137 - 0.636763
carB PP4723 carbamoyl-phosphate synthase, large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS5368704 3231 - 0.616837
cmk PP1771 cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS1978571 687 + 0.611354
codA PP3189 cytosine deaminaseSubName: Full=Cytosine deaminase; chromosome CDS3618147 1242 + 0.621578
codB PP3187 cytosine transporterSubName: Full=Cytosine transporter; chromosome CDS3615663 1266 + 0.6406
cumB PP1035 cumB proteinRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS1182394 438 + 0.675799
cyaA PP5222 adenylate cyclaseSubName: Full=Adenylate cyclase; chromosome CDS5956588 2856 + 0.646709
dcd PP1100 deoxycytidine triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS1257456 567 + 0.597884
dut PP5286 deoxyuridine 5-triphosphate nucleotidohydrolaseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS6034886 456 + 0.655702
gad PP4281 guanine aminohydrolaseSubName: Full=Guanine aminohydrolase; chromosome CDS4871625 1305 + 0.629885
gmk-2 PP5296 guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS6043019 621 + 0.603865
guaA PP1032 GMP synthaseRecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS1177116 1578 + 0.631179
ndk PP0849 nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS983629 426 + 0.56338
nrdA PP1179 ribonucleoside reductase, alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS1352495 2880 - 0.619097
nrdB PP1177 ribonucleoside reductase, beta subunitRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS1350532 1251 - 0.598721
pcaB PP1379 3-carboxy-cis,cis-muconate cycloisomeraseSubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; chromosome CDS1571875 1353 + 0.668884
ppx PP5216 exopolyphosphataseSubName: Full=Exopolyphosphatase; chromosome CDS5949275 1503 + 0.628743
prsA PP0722 ribose-phosphate pyrophosphokinaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; Short=P-Rib-PP synthase; Short=PRPP synthase; chromosome CDS838754 942 - 0.58811
purA PP4889 adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS5557956 1293 - 0.617943
purB PP4016 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; chromosome CDS4526953 1371 + 0.637491
purC PP1240 phosphoribosylaminoimidazole-succinocarboxamidesynthaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS1417540 711 + 0.594937
purD PP4823 phosphoribosylamine--glycine ligaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS5485238 1296 + 0.64892
purE PP5336 phosphoribosylaminoimidazole carboxylase, catalytic subunitRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS6083035 492 - 0.652439
purF PP2000 amidophosphoribosyltransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; chromosome CDS2267673 1506 + 0.61421
purH PP4822 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolaseRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS5483484 1608 + 0.622512
purK PP5335 phosphoribosylaminoimidazole carboxylase, ATPase subunitSubName: Full=Phosphoribosylaminoimidazole carboxylase, ATPase subunit; chromosome CDS6081942 1083 - 0.654663
purL PP1037 phosphoribosylformylglycinamidine synthaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS1184794 3900 + 0.649231
purM PP1665 phosphoribosylformylglycinamidine cyclo-ligaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS1860932 1059 - 0.64967
purN PP1664 phosphoribosylglycinamide formyltransferaseSubName: Full=Phosphoribosylglycinamide formyltransferase; chromosome CDS1860279 654 - 0.643731
purT PP1457 phosphoribosylglycinamide formyltransferase 2RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; chromosome CDS1661869 1182 + 0.645516
purU-1 formyltetrahydrofolate deformylaseSubName: Full=Formyltetrahydrofolate deformylase; chromosome CDS393458 858 + 0.599068
purU-2 PP1367 formyltetrahydrofolate deformylaseSubName: Full=Formyltetrahydrofolate deformylase; chromosome CDS1556093 852 + 0.60446
purU-3 PP1943 formyltetrahydrofolate deformylaseSubName: Full=Formyltetrahydrofolate deformylase; chromosome CDS2198238 861 + 0.495935
pyrB PP4998 aspartate carbamoyltransferaseRecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS5694267 1005 + 0.641791
pyrC PP1086 dihydroorotase, homodimeric typeRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS1244479 1047 - 0.657116
pyrD PP2095 dihydroorotate dehydrogenaseRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS2387238 1023 + 0.647116
pyrE PP5291 orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS6039265 642 - 0.61215
pyrF PP1815 orotidine 5-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS2040622 702 + 0.655271
pyrG PP1610 CTP synthaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS1806314 1629 + 0.620626
pyrH PP1593 uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS1787211 744 + 0.599462
pyrR PP4997 transcriptional regulator PyrRSubName: Full=Transcriptional regulator PyrR; chromosome CDS5693736 519 + 0.67052
thyA PP5141 thymidylate synthaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS5866725 972 - 0.616255
upp PP0746 uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS865185 639 - 0.618153
uraA PP0745 uracil transporterSubName: Full=Uracil transporter; chromosome CDS863917 1266 - 0.624803
ushA PP1414 5`-nucleotidaseSubName: Full=5-nucleotidase; chromosome CDS1612919 1683 - 0.581105
uxpA PP1044 lipoprotein UxpASubName: Full=Lipoprotein UxpA; chromosome CDS1193860 1653 + 0.686025
xdhA PP4278 xanthine dehydrogenase, XdhA subunitSubName: Full=Xanthine dehydrogenase, XdhA subunit; chromosome CDS4866803 1455 + 0.643299
xdhB PP4279 xanthine dehydrogenase, XdhB subunitSubName: Full=Xanthine dehydrogenase, XdhB subunit; chromosome CDS4868250 2400 + 0.6325
xpt PP5265 xanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; Short=XPRTase; EC=2.4.2.22; chromosome CDS6013214 573 + 0.596859