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2024-06-17 03:36:23

Gene list

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COG category: Nucleotide transport and metabolism
Genomic element: chromosome

Number of genes found: 79

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Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA S2015 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1937878 459 + 0.470588
add S1780 adenosine deaminaseRecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; chromosome CDS1718587 1002 + 0.53493
adk S0426 adenylate kinaseRecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; chromosome CDS433501 645 + 0.516279
amn S2160 AMP nucleosidaseSubName: Full=AMP nucleosidase; chromosome CDS2047751 1455 + 0.494845
apt S0421 adenine phosphoribosyltransferaseRecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; chromosome CDS427744 552 + 0.536232
carA S0031 carbamoyl-phosphate synthetase, glutamine (small) subunitRecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; chromosome CDS28567 1149 + 0.534378
carB S0032 carbamoyl-phosphate synthase large subunitRecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; chromosome CDS29733 3222 + 0.557107
cdd S2357 cytidine/deoxycytidine deaminaseRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; chromosome CDS2234089 885 + 0.544633
cmk S0970 cytidylate kinaseRecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; chromosome CDS948961 684 + 0.538012
cpdB S4538 2:3-cyclic-nucleotide 2-phosphodiesteraseSubName: Full=2:3-cyclic-nucleotide 2-phosphodiesterase; chromosome CDS4443609 1944 + 0.49537
cyaA S3878 adenylate cyclaseRecName: Full=Adenylate cyclase; EC=4.6.1.1; AltName: Full=ATP pyrophosphate-lyase; AltName: Full=Adenylyl cyclase; chromosome CDS3771245 2547 - 0.522968
dcd S2253 2-deoxycytidine 5-triphosphate deaminaseRecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; chromosome CDS2130034 582 - 0.599656
deoA S4685 thymidine phosphorylaseRecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; chromosome CDS4577029 1323 + 0.554044
deoC S4684 2-deoxyribose-5-phosphate aldolaseRecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; chromosome CDS4576123 780 + 0.551282
deoD S4687 purine-nucleoside phosphorylaseRecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; chromosome CDS4579684 720 + 0.529167
dgt S0155 deoxyguanosine triphosphate triphosphohydrolaseRecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; Short=dGTP triphosphohydrolase; Short=dGTPase; EC=3.1.5.1; chromosome CDS170383 1518 + 0.47892
dut S4089 deoxyuridinetriphosphataseRecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; chromosome CDS3990556 459 - 0.546841
gmk S4081 guanylate kinaseRecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; chromosome CDS3982890 624 - 0.490385
gppA S3907 guanosine pentaphosphatase, exopolyphosphataseRecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; chromosome CDS3800498 1485 + 0.535354
gpt S0307 guanine-hypoxanthine phosphoribosyltransferaseRecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; chromosome CDS306859 459 + 0.520697
guaA S2725 GMP synthetase (glutamine-hydrolyzing)RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; chromosome CDS2613999 1578 - 0.539924
guaC S0103 GMP reductaseRecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; chromosome CDS111433 1044 + 0.517241
hpt S0124 hypoxanthine phosphoribosyltransferaseRecName: Full=Hypoxanthine phosphoribosyltransferase; Short=HPRT; EC=2.4.2.8; chromosome CDS139001 549 + 0.499089
ndk S2736 nucleoside diphosphate kinaseRecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; chromosome CDS2627475 432 - 0.525463
nrdA S2449 ribonucleoside diphosphate reductase 1, alpha subunit, B1RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2341076 2286 + 0.536308
nrdB S2450 ribonucleoside-diphosphate reductase 1, beta subunit, B2SubName: Full=Ribonucleoside-diphosphate reductase 1, beta subunit, B2; chromosome CDS2343556 1170 + 0.506838
nrdD S4514 anaerobic ribonucleoside-triphosphate reductaseSubName: Full=Anaerobic ribonucleoside-triphosphate reductase; chromosome CDS4416652 2139 + 0.535764
nrdE S2889 ribonucleoside-diphosphate reductase 2, alpha subunitRecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; chromosome CDS2769917 2106 + 0.519468
nrdF S2890 ribonucleoside-diphosphate reductase 2, beta chainRecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; chromosome CDS2772032 960 + 0.486458
nrdI S2888 hypothetical proteinRecName: Full=Protein NrdI; chromosome CDS2769495 411 + 0.559611
nupC S2598 permease of transport system for 3 nucleosidesSubName: Full=Permease of transport system for 3 nucleosides; chromosome CDS2494019 1203 + 0.494597
pfs S0154 hypothetical proteinRecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; chromosome CDS169601 699 - 0.529328
ppx S2695 exopolyphosphataseSubName: Full=Exopolyphosphatase; chromosome CDS2591432 1542 + 0.510376
prsA S1294 phosphoribosylpyrophosphate synthetaseRecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; chromosome CDS1257524 948 - 0.529536
purA S4600 adenylosuccinate synthetaseRecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; chromosome CDS4501665 1299 + 0.538106
purB S1233 adenylosuccinate lyaseSubName: Full=Adenylosuccinate lyase; chromosome CDS1194693 1371 - 0.524435
purC S2669 phosphoribosylaminoimidazole-succinocarboxamide synthetase, SAICAR synthetaseRecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; chromosome CDS2563096 714 - 0.521008
purD S3658 phosphoribosylglycinamide synthetase, GAR synthetaseRecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; chromosome CDS3548328 1290 + 0.58062
purE S0462 phosphoribosylaminoimidazole carboxylase; AIR carboxylase, catalytic subunitRecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; chromosome CDS470916 510 - 0.594118
purF S2523 amidophosphoribosyltransferase, PRPP amidotransferaseRecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; Short=GPATase; chromosome CDS2416290 1518 - 0.528327
purH S3657 phosphoribosylaminoimidazolecarboxamide formyltransferase, AICAR formyltransferase; IMP cyclohydrolaseRecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; chromosome CDS3546727 1590 + 0.560377
purK S0461 phosphoribosylaminoimidazole carboxylase; AIR carboxylase, CO(2)-fixing subunitSubName: Full=Phosphoribosylaminoimidazole carboxylase AIR carboxylase, CO(2)-fixing subunit; chromosome CDS469852 1068 - 0.562734
purL S2776 phosphoribosylformyl-glycineamide synthetase, FGAM synthetaseRecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; AltName: Full=Formylglycinamide ribotide synthetase; chromosome CDS2670114 3888 - 0.566358
purM S2692 phosphoribosylaminoimidazole synthetase, AIR synthetaseRecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; chromosome CDS2587499 1053 + 0.536562
purN S2693 phosphoribosylglycinamide formyltransferase 1SubName: Full=Phosphoribosylglycinamide formyltransferase 1; chromosome CDS2588551 639 + 0.535211
purT S1925 phosphoribosylglycinamide formyltransferase 2RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; chromosome CDS1863948 1179 + 0.536896
purU S1318 formyltetrahydrofolate deformylaseRecName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; AltName: Full=Formyl-FH(4) hydrolase; chromosome CDS1282714 843 - 0.47331
pyrB S4507 aspartate carbamoyltransferase, catalytic subunitRecName: Full=Aspartate carbamoyltransferase catalytic chain; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; chromosome CDS4406917 936 + 0.534188
pyrC S1146 dihydro-orotaseRecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; chromosome CDS1112214 1047 - 0.531041
pyrD S1011 dihydro-orotate dehydrogenaseRecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; chromosome CDS995800 1011 + 0.467854
pyrE S4087 orotate phosphoribosyltransferaseRecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; chromosome CDS3989175 642 + 0.528037
pyrF S1368 orotidine-5-phosphate decarboxylaseRecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; chromosome CDS1336071 738 + 0.5271
pyrG S2989 CTP synthetaseRecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; chromosome CDS2862355 1638 - 0.514652
pyrH S0164 uridylate kinaseRecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; chromosome CDS182286 726 + 0.526171
pyrI S4508 aspartate carbamoyltransferase, regulatory subunitRecName: Full=Aspartate carbamoyltransferase regulatory chain; chromosome CDS4407865 462 + 0.47619
tdk S1324 thymidine kinaseRecName: Full=Thymidine kinase; EC=2.7.1.21; chromosome CDS1288459 618 + 0.423948
thyA S3035 thymidylate synthetaseRecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; chromosome CDS2919404 795 - 0.513208
tmk S1182 thymidylate kinaseRecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=Thymidine monophosphate kinase; AltName: Full=dTMP kinase; Short=TMPK; chromosome CDS1145732 642 + 0.537383
udk S2254 uridine/cytidine kinaseRecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; chromosome CDS2130707 642 - 0.487539
udp S3845 uridine phosphorylaseRecName: Full=Uridine phosphorylase; EC=2.4.2.3; chromosome CDS3742980 762 - 0.536745
upp S2691 uracil phosphoribosyltransferaseRecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; chromosome CDS2586564 627 - 0.5311
uraA S2690 uracil transport proteinSubName: Full=Uracil transport protein; chromosome CDS2585189 1290 - 0.518605
ushA S0432 UDP-sugar hydrolase (5-nucleotidase)SubName: Full=UDP-sugar hydrolase (5-nucleotidase); chromosome CDS441136 1653 + 0.507562
yaaF S0029 hypothetical proteinRecName: Full=Non-specific ribonucleoside hydrolase RihC; EC=3.2.-.-; AltName: Full=Purine/pyrimidine ribonucleoside hydrolase; chromosome CDS26209 915 + 0.557377
ybbT S0451 hypothetical proteinRecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; chromosome CDS461983 483 + 0.513458
ybeK S0652 putative tRNA synthetaseRecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS662340 936 + 0.511752
ycdG S1079 putative transport proteinSubName: Full=Putative transport protein; chromosome CDS1060803 1395 - 0.541219
ycfF S1187 hypothetical proteinRecName: Full=HIT-like protein HinT; EC=3.-.-.-; AltName: Full=Purine nucleoside phosphoramidase; chromosome CDS1152494 360 + 0.502778
yeiJ S2375 putative transport system permease proteinSubName: Full=Putative transport system permease protein; chromosome CDS2254777 1251 - 0.502798
yeiK S2376 hypothetical proteinRecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihB; EC=3.2.2.8; AltName: Full=Cytidine/uridine-specific hydrolase; chromosome CDS2256127 942 - 0.515924
yeiM S2378 putative transport system permease proteinSubName: Full=Putative transport system permease protein; chromosome CDS2257964 1251 - 0.511591
yfhC S2778 putative deaminaseRecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; chromosome CDS2675813 537 - 0.540037
ygfU S3073 putative permeaseSubName: Full=Putative permease; chromosome CDS2957303 1518 + 0.485507
yggV S3149 putative ribosomal proteinRecName: Full=dITP/XTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; chromosome CDS3027165 594 + 0.557239
yghR S3232 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3116434 759 - 0.532279
yghS S3233 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3117224 714 - 0.495798
yghT S3234 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3118111 693 + 0.473304
yicE S4075 putative transport proteinRecName: Full=Xanthine permease XanP; chromosome CDS3974740 1392 - 0.550287
yicP S3972 probable adenine deaminase (synthesis xanthine)RecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase; EC=3.5.4.2; chromosome CDS3865828 1767 + 0.546689