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2024-06-18 19:10:10

Gene list

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COG category: Amino acid transport and metabolism
Genomic element: chromosome 2

Number of genes found: 120

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Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA RSP_3566 dimethylglycine dehydrogenaseSubName: Full=Dimethylglycine dehydrogenase; EC=1.5.8.4; chromosome 2 CDS661269 2496 - 0.667067
NA RSP_3026 Transcriptional regulator, MocR familyRecName: Full=Uncharacterized HTH-type transcriptional regulator RHOS4_30730; chromosome 2 CDS57004 1371 - 0.719183
NA RSP_3522 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS601149 879 - 0.662116
NA RSP_3293 ABC branched-chain amino acid transporter, inner membrane subunitSubName: Full=Amino acid/amide ABC transporter membrane protein 2, HAAT family; chromosome 2 CDS352580 999 - 0.665666
NA RSP_3444 Putative Xaa-Pro aminopeptidaseSubName: Full=Putative Xaa-Pro aminopeptidase; EC=3.4.13.9; chromosome 2 CDS514445 1185 - 0.731646
NA RSP_3155 Thiamine pyrophosphate-requiring enzymeSubName: Full=Thiamine pyrophosphate-requiring enzyme; EC=2.2.1.6; chromosome 2 CDS203970 1653 - 0.735632
NA RSP_3395 ABC opine/polyamine transporter, inner membrane subunitSubName: Full=ABC opine/polyamine transporter, inner membrane subunit; chromosome 2 CDS459079 873 - 0.679267
NA RSP_3041 ABC permidine/putrescine transporter, ATPase subunitSubName: Full=ABC permidine/putrescine transporter, ATPase subunit; chromosome 2 CDS75444 1098 - 0.691257
NA RSP_3038 ABC permidine/putrescine transporter, inner membrane subunitSubName: Full=ABC permidine/putrescine transporter, inner membrane subunit; chromosome 2 CDS72551 804 - 0.66791
NA RSP_3389 Isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenaseSubName: Full=Isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase; EC=1.1.1.83; EC=1.1.1.93; EC=4.1.1.73; chromosome 2 CDS453740 1074 + 0.685289
NA RSP_3437 Putative amino acid aminotransferaseSubName: Full=Aspartate aminotransferase; chromosome 2 CDS507715 1221 + 0.699427
NA RSP_3585 Tryptophan synthase beta chainRecName: Full=Tryptophan synthase beta chain; EC=4.2.1.20; chromosome 2 CDS678504 1230 - 0.656911
NA RSP_6211 hypothetical protein chromosome 2 CDS31225 297 + 0.737374
NA RSP_3057 ABC proline/glycine betaine transporter, ATPase subunit chromosome 2 CDS97408 1092 - 0.696886
NA RSP_3255 ABC peptide transporter, periplasmic binding proteinSubName: Full=ABC peptide transporter, periplasmic binding protein; chromosome 2 CDS312899 1623 - 0.658041
NA RSP_3388 putative Isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase ttuCSubName: Full=Putative Isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase ttuC; EC=1.1.1.83; EC=1.1.1.93; EC=4.1.1.73; chromosome 2 CDS452647 1083 + 0.708218
NA RSP_1419 TRAP-T family transporter, small (4 TMs) inner membrane subunitSubName: Full=TRAP-T family transporter, small (4 TMs) inner membrane subunit; chromosome 2 CDS935848 492 - 0.735772
NA RSP_3393 ABC opine/polyamine transporter, inner membrane subunitSubName: Full=ABC opine/polyamine transporter, inner membrane subunit; chromosome 2 CDS458274 795 - 0.666667
NA RSP_3456 Putative dihydrodipicolinate synthaseSubName: Full=Putative dihydrodipicolinate synthase; EC=4.3.3.7; chromosome 2 CDS525796 927 + 0.695793
NA RSP_6180 conserved hypothetical membrane protein chromosome 2 CDS464855 1200 + 0.688333
NA RSP_3248 ABC peptide transporter, periplasmic binding proteinSubName: Full=ABC peptide transporter, periplasmic binding protein; chromosome 2 CDS304951 1512 - 0.62963
NA RSP_3744 ABC amino acid transporter, inner membrane subunitSubName: Full=Amino acid ABC transporter membrane protein, PAAT family; chromosome 2 CDS869686 660 - 0.659091
NA RSP_3295 ABC branched-chain amino acid transporter, ATPase subunitSubName: Full=Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; chromosome 2 CDS354469 699 - 0.663805
NA RSP_3460 ABC polar amino acid transporter, inner membrane subunitSubName: Full=Amino acid ABC transporter membrane protein 2, PAAT family; chromosome 2 CDS529593 666 + 0.686186
NA RSP_3040 ABC permidine/putrescine transporter, periplasmic substrate-binding proteinSubName: Full=ABC permidine/putrescine transporter, periplasmic substrate-binding protein; chromosome 2 CDS74227 1158 - 0.665803
NA RSP_3518 ABC polyamine/opine transporter, inner membrane subunitSubName: Full=ABC polyamine/opine transporter, inner membrane subunit; chromosome 2 CDS597387 786 + 0.673028
NA RSP_3030 ABC peptide/opine transporter, inner membrane subunit chromosome 2 CDS62785 945 + 0.684656
NA RSP_3463 putative hydantoin racemaseSubName: Full=Putative hydantoin racemase; chromosome 2 CDS532689 642 + 0.721184
NA RSP_3718 conserved hypothetical proteinSubName: Full=Choline dehydrogenase-like flavoprotein; chromosome 2 CDS840434 1452 - 0.685262
NA RSP_3806 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS5736 1089 - 0.652893
NA RSP_3587 N-(5'-phosphoribosyl)anthranilate isomeraseRecName: Full=N-(5-phosphoribosyl)anthranilate isomerase; Short=PRAI; EC=5.3.1.24; chromosome 2 CDS680191 639 - 0.713615
NA RSP_3058 ABC proline/glycine betaine transporter, inner membrane subunitSubName: Full=ABC proline/glycine betaine transporter, inner membrane subunit; chromosome 2 CDS98492 912 - 0.66886
NA RSP_3450 conserved hypothetical protein chromosome 2 CDS520255 738 - 0.710027
NA RSP_3227 Lysine 2,3-aminomutaseSubName: Full=L-lysine 2,3-aminomutase; EC=5.4.3.2; chromosome 2 CDS285991 1023 + 0.699902
NA RSP_3607 hypothetical proteinSubName: Full=N-methylhydantoinase A/acetone carboxylase, beta subunit; chromosome 2 CDS702698 2028 + 0.74359
NA RSP_3347 methionine synthase, 5-methyltetrahydrofolate--homocysteine methyltransferaseSubName: Full=Methionine synthase (B12-dependent); EC=2.1.1.13; chromosome 2 CDS413869 1080 - 0.696296
NA RSP_3039 ABC permidine/putrescine transporter, inner membrane subunitSubName: Full=ABC permidine/putrescine transporter, inner membrane subunit; chromosome 2 CDS73363 852 - 0.66784
NA RSP_3053 Possible dioxygenase/glyoxalase family proteinSubName: Full=Putative dioxygenase/glyoxalase family protein; chromosome 2 CDS91912 930 + 0.722581
NA RSP_3515 ABC polyamine/opine transporter, periplasmic binding proteinSubName: Full=ABC polyamine/opine transporter, periplasmic binding protein; chromosome 2 CDS594499 1038 + 0.688825
NA RSP_3245 Possible transporter, Major facilitator superfamily (MFS)SubName: Full=Putative transporter, Major facilitator superfamily (MFS); chromosome 2 CDS301985 1236 + 0.73301
NA RSP_3033 ABC peptide/opine transporter, ATPase subunitSubName: Full=ABC peptide/opine transporter, ATPase subunit; chromosome 2 CDS65589 1002 + 0.715569
NA RSP_3032 ABC peptide/opine transporter, ATPase subunitSubName: Full=ABC peptide/opine transporter, ATPase subunit; chromosome 2 CDS64621 972 + 0.712963
NA RSP_3296 ABC branched-chain amino acid transporter, ATPase subunitSubName: Full=Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; chromosome 2 CDS355164 774 - 0.664083
NA RSP_3458 ABC polar amino acid transporter, ATPase subunitSubName: Full=Amino acid ABC transporter ATP-binding protein, PAAT family; EC=3.6.3.21; chromosome 2 CDS528164 741 + 0.668016
NA RSP_3446 Putative amino acid hydrolaseSubName: Full=N-carbamoyl-L-amino acid amidohydrolase; EC=3.5.1.87; chromosome 2 CDS516266 1281 - 0.733802
NA RSP_3334 HyuE hydantoin racemase chromosome 2 CDS398053 618 - 0.775081
NA RSP_3294 ABC branched-chain amino acid transporter, inner membrane subunitSubName: Full=Amino acid/amide ABC transporter membrane protein 1, HAAT family; chromosome 2 CDS353580 888 - 0.652027
NA RSP_6161 hypothetical proteinSubName: Full=SH3 domain-containing protein; chromosome 2 CDS93910 285 - 0.722807
NA RSP_3397 ABC opine/polyamine transporter, periplasmic binding proteinSubName: Full=ABC opine/polyamine transporter, periplasmic binding protein; chromosome 2 CDS461068 1044 - 0.676245
NA RSP_3745 ABC amino acid transporter, ATPase subunitSubName: Full=Amino acid ABC transporter ATP-binding protein, PAAT family; EC=3.6.3.21; chromosome 2 CDS870342 801 - 0.670412
NA RSP_3516 ABC polyamine/opine transporter, ATPase subunitSubName: Full=ABC polyamine/opine transporter, ATPase subunit; chromosome 2 CDS595543 990 + 0.69596
NA RSP_3447 Putative dehydrogenaseSubName: Full=Putative dehydrogenase; EC=1.1.1.95; chromosome 2 CDS517543 996 - 0.752008
NA RSP_3257 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS314543 921 - 0.666667
NA RSP_3021 putative catechol 2,3-dioxygenaseSubName: Full=Putative catechol 2,3-dioxygenase; EC=1.13.11.2; chromosome 2 CDS51852 915 - 0.66776
NA RSP_3747 putative dipeptidaseSubName: Full=Putative dipeptidase; chromosome 2 CDS872050 1179 + 0.684478
NA RSP_3336 ABC spermidine/putrescine transporter, inner membrane subunitSubName: Full=ABC spermidine/putrescine transporter, inner membrane subunit; chromosome 2 CDS399548 864 - 0.621528
NA RSP_3003 hypothetical protein chromosome 2 CDS39397 297 + 0.468013
NA RSP_3471 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS540413 687 + 0.727802
NA RSP_3233 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS292202 903 + 0.682171
NA RSP_3232 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS291187 1008 + 0.64881
NA RSP_3525 ABC peptide transporter, periplasmic binding proteinSubName: Full=ABC peptide transporter, periplasmic binding protein; chromosome 2 CDS604763 1608 - 0.66107
NA RSP_3235 ABC peptide transporter, ATPase subunitSubName: Full=ABC peptide transporter, ATPase subunit; chromosome 2 CDS293109 849 + 0.677267
NA RSP_3449 Putative allophanate hydrolase subunit 2SubName: Full=Putative allophanate hydrolase subunit 2; EC=3.5.1.54; chromosome 2 CDS519194 1065 - 0.737089
NA RSP_3563 putative FAD-dependent glycerol-3-phosphate dehydrogenase proteinSubName: Full=Putative FAD-dependent glycerol-3-phosphate dehydrogenase protein; chromosome 2 CDS658350 1107 + 0.736224
NA RSP_3065 Putative transporter, Major facilitator superfamily (MFS)SubName: Full=Putative transporter, Major facilitator superfamily (MFS); chromosome 2 CDS105579 1134 + 0.738095
NA RSP_3337 ABC spermidine/putrescine transporter, periplasmic binding proteinSubName: Full=ABC spermidine/putrescine transporter, periplasmic binding protein; chromosome 2 CDS400644 1266 - 0.64534
NA RSP_3455 D-alanine aminotransferaseSubName: Full=D-alanine aminotransferase; EC=2.6.1.21; chromosome 2 CDS524927 858 + 0.698135
NA RSP_3517 ABC polyamine/opine transporter, inner membrane subunitSubName: Full=ABC polyamine/opine transporter, inner membrane subunit; chromosome 2 CDS596537 849 + 0.677267
NA RSP_3035 Putative transporter, major facilitator superfamily (MFS)SubName: Full=Putative transporter, major facilitator superfamily (MFS); chromosome 2 CDS68309 1278 + 0.695618
NA RSP_3308 possible transporter, DME family, DMT superfamilySubName: Full=Putative transporter, DME family, DMT superfamily; chromosome 2 CDS368835 924 - 0.741342
NA RSP_3396 ABC opine/polyamine transporter, ATPase subunitSubName: Full=ABC opine/polyamine transporter, ATPase subunit; chromosome 2 CDS459948 1119 - 0.709562
NA RSP_3292 Glucose-methanol-choline oxidoreductaseSubName: Full=Glucose-methanol-choline oxidoreductase; chromosome 2 CDS350977 1602 - 0.687266
NA RSP_3550 Aminoacyl-transfer RNA synthetase, class IISubName: Full=ATP phosphoribosyltransferase regulatory subunit; EC=2.4.2.17; chromosome 2 CDS639999 1098 - 0.74408
NA RSP_3439 Aspartate aminotransferaseSubName: Full=Aspartate aminotransferase; EC=2.6.1.1; chromosome 2 CDS509406 1209 + 0.693135
NA RSP_6195 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS743670 222 - 0.644144
NA RSP_3442 2-hydroxyacid dehydrogenaseSubName: Full=2-hydroxyacid dehydrogenase; EC=1.1.1.79; EC=1.1.1.81; chromosome 2 CDS512299 942 + 0.71656
NA RSP_3742 ABC amino acid transporter, periplasmic binding proteinSubName: Full=Amino acid ABC transporter substrate-binding protein, PAAT family; chromosome 2 CDS867901 792 - 0.666667
NA RSP_3426 conserved hypothetical proteinSubName: Full=Glutathionylspermidine synthase; chromosome 2 CDS493970 1203 - 0.676642
NA RSP_3524 ABC peptide transporter, periplasmic binding proteinSubName: Full=ABC peptide transporter, periplasmic binding protein; chromosome 2 CDS603069 1605 - 0.683489
NA RSP_3297 ABC branched-chain amino acid transporter, periplasmic binding proteinSubName: Full=Amino acid/amide ABC transporter substrate-binding protein, HAAT family; chromosome 2 CDS355940 1203 - 0.653367
NA RSP_3601 Lipolytic enzyme, G-D-S-L family chromosome 2 CDS694440 627 - 0.708134
NA RSP_3034 ABC peptide/opine transporter, periplasmic substrate-binding proteinSubName: Full=ABC peptide/opine transporter, periplasmic substrate-binding protein; chromosome 2 CDS66628 1560 + 0.672436
NA RSP_3251 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS308953 939 - 0.687966
NA RSP_3059 ABC proline/glycine betaine transporter, periplasmic substrate-binding proteinSubName: Full=ABC proline/glycine betaine transporter, periplasmic substrate-binding protein; chromosome 2 CDS99471 1002 - 0.688623
NA RSP_3250 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS308129 828 - 0.682367
NA RSP_3767 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS891012 318 - 0.710692
NA RSP_3180 Transglutaminase-like enzymeSubName: Full=Transglutaminase-like enzyme; chromosome 2 CDS231968 813 + 0.677737
NA RSP_3258 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS315463 888 - 0.697072
NA RSP_3519 putative proline racemaseSubName: Full=Proline racemase; EC=5.1.1.4; chromosome 2 CDS598216 1014 + 0.66568
NA RSP_3523 ABC peptide transporter, inner membrane subunitSubName: Full=ABC peptide transporter, inner membrane subunit; chromosome 2 CDS602038 966 - 0.654244
NA RSP_3236 ABC peptide transporter, ATPase subunitSubName: Full=ABC peptide transporter, ATPase subunit; chromosome 2 CDS293957 849 + 0.687868
NA RSP_3346 5-methyltetrahydrofolate--homocysteinemethyltran sferaseSubName: Full=Methionine synthase (B12-dependent); EC=2.1.1.13; chromosome 2 CDS411146 2727 - 0.685735
NA RSP_3457 ABC polar amino acid transporter, periplasmic binding proteinSubName: Full=Amino acid ABC transporter substrate-binding protein, PAAT family; chromosome 2 CDS527231 864 + 0.677083
NA RSP_3338 ABC spermidine/putrescine transporter, ATPase subunitSubName: Full=ABC spermidine/putrescine transporter, ATPase subunit; chromosome 2 CDS401935 978 - 0.691207
NA RSP_3459 ABC polar amino acid transporter, inner membrane subunitSubName: Full=Amino acid ABC transporter membrane protein 1, PAAT family; chromosome 2 CDS528909 681 + 0.694567
NA RSP_3231 ABC peptide transporter, periplasmic binding proteinSubName: Full=ABC peptide transporter, periplasmic binding protein; chromosome 2 CDS289521 1599 + 0.637899
NA RSP_3655 Dihydrodipicolinate synthase/N-acetylneuraminate lyaseRecName: Full=Probable 5-dehydro-4-deoxyglucarate dehydratase; EC=4.2.1.41; AltName: Full=5-keto-4-deoxy-glucarate dehydratase; Short=KDGDH; chromosome 2 CDS763763 906 - 0.68543
NA RSP_3335 ABC spermidine/putrescine transporter, inner membrane subunitSubName: Full=ABC spermidine/putrescine transporter, inner membrane subunit; chromosome 2 CDS398710 837 - 0.676225
NA RSP_3031 ABC peptide/opine transporter, inner membrane subunitSubName: Full=ABC peptide/opine transporter, inner membrane subunit; chromosome 2 CDS63731 894 + 0.696868
amiC RSP_3260 Putative negative amidase regulator, AmiCSubName: Full=Amino acid/amide ABC transporter substrate-binding protein, HAAT family; chromosome 2 CDS316924 1062 - 0.689266
argE RSP_3695 putative acetylornithine deacetylase (acetylornithinase)SubName: Full=Putative acetylornithine deacetylase (Acetylornithinase); EC=3.5.1.18; chromosome 2 CDS815720 1095 - 0.728767
aroA RSP_3592 EPSP synthase, 3-phosphoshikimate 1-carboxyvinyltransferaseRecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Short=EPSPS; chromosome 2 CDS684191 1338 - 0.715994
aroQ RSP_3376 3 dehydroquinase dehydratase, class IIRecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; EC=4.2.1.10; AltName: Full=Type II DHQase; chromosome 2 CDS441010 444 - 0.671171
cxp RSP_3832 putative thermostable carboxypeptidase 1SubName: Full=Carboxypeptidase Taq; EC=3.4.17.19; chromosome 2 CDS27084 1482 + 0.692982
cysE RSP_3060 possible O-acetylserine synthase chromosome 2 CDS101473 534 + 0.696629
dadA RSP_3113 D-amino acid dehydrogenase small subunitRecName: Full=D-amino acid dehydrogenase small subunit; EC=1.4.99.1; chromosome 2 CDS157517 1311 - 0.723112
dapA RSP_3408 Dihydrodipicolinate synthetaseSubName: Full=Dihydrodipicolinate synthetase; EC=4.3.3.7; chromosome 2 CDS474142 885 - 0.681356
fdh RSP_3104 Putative Glutathione-dependent formaldehyde dehydrogenaseSubName: Full=Putative Glutathione-dependent formaldehyde dehydrogenase; EC=1.1.1.1; EC=1.1.1.284; chromosome 2 CDS147887 1185 + 0.670042
ggt RSP_3272 Gamma-glutamyltranspeptidaseSubName: Full=Gamma-glutamyltransferase 1; EC=2.3.2.2; chromosome 2 CDS330105 1788 - 0.721476
hisG RSP_3549 ATP phosphoribosyltransferaseRecName: Full=ATP phosphoribosyltransferase; Short=ATP-PRT; Short=ATP-PRTase; EC=2.4.2.17; chromosome 2 CDS639292 711 - 0.694796
hutH RSP_3574 putative histidine ammonia-lyaseSubName: Full=Histidine ammonia-lyase; EC=4.3.1.3; chromosome 2 CDS668567 1572 - 0.688931
ilvD RSP_3074 Dihydroxy-acid and 6-phosphogluconate dehydrataseRecName: Full=Dihydroxy-acid dehydratase; Short=DAD; EC=4.2.1.9; chromosome 2 CDS115149 1839 - 0.694399
iolD RSP_3284 Acetolactate synthaseSubName: Full=3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; EC=3.7.1.-; chromosome 2 CDS340942 1845 + 0.717615
lguL RSP_3237 Lactoylglutathione lyaseSubName: Full=Lactoylglutathione lyase; EC=4.4.1.5; chromosome 2 CDS294958 396 + 0.631313
proA RSP_3824 Gamma-glutamyl phosphate reductase GPRRecName: Full=Gamma-glutamyl phosphate reductase; Short=GPR; EC=1.2.1.41; AltName: Full=Glutamate-5-semialdehyde dehydrogenase; AltName: Full=Glutamyl-gamma-semialdehyde dehydrogenase; Short=GSA dehydrogenase; chromosome 2 CDS20095 1263 + 0.702296
proB1 RSP_3823 glutamate 5-kinaseRecName: Full=Glutamate 5-kinase; EC=2.7.2.11; AltName: Full=Gamma-glutamyl kinase; Short=GK; chromosome 2 CDS18932 1113 + 0.712489
proC RSP_3364 Pyrroline-5-carboxylate reductase chromosome 2 CDS428054 768 + 0.742188
selD RSP_3716 selenide, water dikinase (selenophosphate synthetase)RecName: Full=Selenide, water dikinase; EC=2.7.9.3; AltName: Full=Selenium donor protein; AltName: Full=Selenophosphate synthase; chromosome 2 CDS838858 1056 + 0.726326
serA RSP_3407 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding subunitSubName: Full=D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding subunit; EC=1.1.1.95; chromosome 2 CDS473195 951 - 0.723449
speB1 RSP_3743 putative agmatinaseSubName: Full=Agmatinase; EC=3.5.3.11; chromosome 2 CDS868720 963 - 0.709242