Gene list
Applied filters:
COG category: Amino acid transport and metabolism
Genomic element: megaplasmid
Number of genes found: 76
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| Silicibacter pomeroyi DSS-3, DSS-3 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SPOA0298 | branched-chain amino acid ABC transporter, permease protein | SubName: Full=Branched-chain amino acid ABC transporter, permease protein; | megaplasmid | CDS | 326663 | 981 | - | 0.573904 |
| NA | SPOA0386 | oxidoreductase, GMC family | SubName: Full=Oxidoreductase, GMC family; | megaplasmid | CDS | 433575 | 1626 | + | 0.662362 |
| NA | SPOA0146 | threonine aldolase, low-specificity | SubName: Full=Threonine aldolase, low-specificity; EC=4.1.2.5; | megaplasmid | CDS | 156768 | 1164 | + | 0.610825 |
| NA | SPOA0332 | dihydroxy-acid dehydratase, putative | SubName: Full=Dihydroxy-acid dehydratase, putative; | megaplasmid | CDS | 372441 | 1797 | - | 0.599889 |
| NA | SPOA0066 | aspartate aminotransferase, putative | SubName: Full=Aspartate aminotransferase, putative; | megaplasmid | CDS | 65624 | 1188 | - | 0.679293 |
| NA | SPOA0295 | hydantoin racemase | SubName: Full=Hydantoin racemase; EC=5.1.99.-; | megaplasmid | CDS | 324468 | 684 | - | 0.589181 |
| NA | SPOA0144 | serine--glyoxylate transaminase, putative | SubName: Full=Serine--glyoxylate transaminase, putative; | megaplasmid | CDS | 154606 | 1191 | + | 0.657431 |
| NA | SPOA0349 | membrane protein, putative | SubName: Full=Membrane protein, putative; | megaplasmid | CDS | 391276 | 960 | - | 0.678125 |
| NA | SPOA0416 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | megaplasmid | CDS | 463118 | 741 | - | 0.676113 |
| NA | SPOA0311 | FAD dependent oxidoreductase/aminomethyl transferase | SubName: Full=FAD dependent oxidoreductase/aminomethyl transferase; | megaplasmid | CDS | 344068 | 2400 | - | 0.622083 |
| NA | SPOA0309 | sulphoacetaldehyde acetyltransferase, putative | SubName: Full=Sulfoacetaldehyde acetyltransferase, putative; | megaplasmid | CDS | 339974 | 1680 | - | 0.628571 |
| NA | SPOA0381 | spermidine/putrescine ABC transporter, periplasmic substrate-binding protein | SubName: Full=Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; | megaplasmid | CDS | 428256 | 1041 | + | 0.620557 |
| NA | SPOA0168 | oxidoreductase, FAD-binding | SubName: Full=Oxidoreductase, FAD-binding protein; | megaplasmid | CDS | 186254 | 1266 | + | 0.63981 |
| NA | SPOA0069 | polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein | SubName: Full=Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; | megaplasmid | CDS | 68410 | 771 | + | 0.635538 |
| NA | SPOA0063 | FAD dependent oxidoreductase/aminomethyl transferase | SubName: Full=FAD dependent oxidoreductase/aminomethyl transferase; | megaplasmid | CDS | 60657 | 2436 | - | 0.642447 |
| NA | SPOA0065 | thiamine pyrophosphate-dependent enzyme | SubName: Full=Thiamine pyrophosphate-dependent enzyme; | megaplasmid | CDS | 64023 | 1602 | - | 0.701623 |
| NA | SPOA0147 | ornithine cyclodeaminase/mu-crystallin family protein | SubName: Full=Ornithine cyclodeaminase/mu-crystallin family protein; | megaplasmid | CDS | 158076 | 879 | + | 0.639363 |
| NA | SPOA0291 | branched-chain amino acid aminotransferase, putative | SubName: Full=Branched-chain amino acid aminotransferase, putative; | megaplasmid | CDS | 320935 | 960 | - | 0.648958 |
| NA | SPOA0267 | dihydroxydipicolinate synthase family protein | SubName: Full=Dihydroxydipicolinate synthase family protein; | megaplasmid | CDS | 293082 | 957 | - | 0.599791 |
| NA | SPOA0070 | polar amino acid uptake family ABC transporter, permease protein | SubName: Full=Polar amino acid uptake family ABC transporter, permease protein; | megaplasmid | CDS | 69190 | 753 | + | 0.653386 |
| NA | SPOA0382 | spermidine/putrescine ABC transporter, ATP-binding protein | SubName: Full=Spermidine/putrescine ABC transporter, ATP-binding protein; | megaplasmid | CDS | 429358 | 1104 | + | 0.65942 |
| NA | SPOA0375 | transcriptional regulator, gntR family | SubName: Full=Transcriptional regulator, gntR family; | megaplasmid | CDS | 419547 | 1464 | + | 0.607924 |
| NA | SPOA0300 | branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein | SubName: Full=Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; | megaplasmid | CDS | 328607 | 1188 | - | 0.575758 |
| NA | SPOA0384 | spermidine/putrescine ABC transporter, permease protein | SubName: Full=Spermidine/putrescine ABC transporter, permease protein; | megaplasmid | CDS | 431347 | 828 | + | 0.612319 |
| NA | SPOA0310 | aminomethyl transferase family protein | SubName: Full=Aminomethyl transferase family protein; | megaplasmid | CDS | 341657 | 2412 | - | 0.589967 |
| NA | SPOA0234 | agmatinase, putative | SubName: Full=Agmatinase, putative; | megaplasmid | CDS | 256041 | 999 | + | 0.625626 |
| NA | SPOA0071 | polar amino acid uptake family ABC transporter, permease protein | SubName: Full=Polar amino acid uptake family ABC transporter, permease protein; | megaplasmid | CDS | 69939 | 789 | + | 0.656527 |
| NA | SPOA0299 | branched-chain amino acid ABC transporter, permease protein | SubName: Full=Branched-chain amino acid ABC transporter, permease protein; | megaplasmid | CDS | 327648 | 870 | - | 0.570115 |
| NA | SPOA0283 | oxidoreductase, GMC family | SubName: Full=Oxidoreductase, GMC family; | megaplasmid | CDS | 311439 | 1605 | - | 0.692212 |
| NA | SPOA0366 | amino acid permease | SubName: Full=Amino acid permease; | megaplasmid | CDS | 409666 | 1347 | + | 0.636229 |
| NA | SPOA0108 | membrane protein, putative | SubName: Full=Membrane protein, putative; | megaplasmid | CDS | 108335 | 1215 | + | 0.606584 |
| NA | SPOA0099 | branched-chain amino acid ABC transporter, ATP-binding protein | SubName: Full=Branched-chain amino acid ABC transporter, ATP-binding protein; | megaplasmid | CDS | 99566 | 705 | - | 0.632624 |
| NA | SPOA0383 | spermidine/putrescine ABC transporter, permease protein | SubName: Full=Spermidine/putrescine ABC transporter, permease protein; | megaplasmid | CDS | 430463 | 885 | + | 0.610169 |
| NA | SPOA0339 | HAD-superfamily hydrolase, subfamily IB | SubName: Full=HAD-superfamily hydrolase, subfamily IB; | megaplasmid | CDS | 383108 | 672 | - | 0.577381 |
| NA | SPOA0231 | glycine betaine/proline ABC transporter, periplasmic substrate-binding protein | SubName: Full=Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; | megaplasmid | CDS | 252309 | 942 | + | 0.602972 |
| NA | SPOA0321 | glyoxalase family protein | SubName: Full=Glyoxalase family protein; | megaplasmid | CDS | 360699 | 462 | - | 0.666667 |
| NA | SPOA0149 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 160318 | 1317 | + | 0.668185 |
| NA | SPOA0199 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 210138 | 1479 | - | 0.623394 |
| NA | SPOA0244 | dihydrodipicolinate synthase family protein | SubName: Full=Dihydrodipicolinate synthase family protein; | megaplasmid | CDS | 268432 | 915 | - | 0.617486 |
| NA | SPOA0266 | proline racemase, putative | SubName: Full=Proline racemase, putative; | megaplasmid | CDS | 292150 | 942 | - | 0.621019 |
| NA | SPOA0262 | oxidoreductase, FAD-binding | SubName: Full=Oxidoreductase, FAD-binding protein; | megaplasmid | CDS | 287856 | 1242 | - | 0.632045 |
| NA | SPOA0435 | pyridoxal-phosphate dependent enzyme | SubName: Full=Pyridoxal-phosphate dependent enzyme; | megaplasmid | CDS | 482759 | 975 | - | 0.688205 |
| NA | SPOA0354 | aminotransferase, class III | SubName: Full=Aminotransferase, class III; | megaplasmid | CDS | 395648 | 1299 | + | 0.656659 |
| NA | SPOA0158 | ACC deaminase/D-cysteine desulfhydrase family | RecName: Full=L-cysteate sulfo-lyase; EC=4.4.1.25; | megaplasmid | CDS | 173964 | 1020 | - | 0.640196 |
| NA | SPOA0209 | oxidoreductase, FAD-binding | SubName: Full=Oxidoreductase, FAD-binding protein; | megaplasmid | CDS | 230029 | 1302 | - | 0.64977 |
| NA | SPOA0429 | peptidase, M20/M25/M40 family | SubName: Full=Peptidase, M20/M25/M40 family; | megaplasmid | CDS | 475904 | 1446 | + | 0.643845 |
| NA | SPOA0148 | membrane protein, major facilitator transporter family | SubName: Full=Membrane protein, major facilitator transporter family; | megaplasmid | CDS | 159056 | 1158 | - | 0.684801 |
| NA | SPOA0418 | acetolactate synthase, large subunit, putative | SubName: Full=Acetolactate synthase, large subunit, putative; | megaplasmid | CDS | 464662 | 1692 | + | 0.663712 |
| NA | SPOA0100 | branched-chain amino acid ABC transporter, ATP-binding protein | SubName: Full=Branched-chain amino acid ABC transporter, ATP-binding protein; | megaplasmid | CDS | 100267 | 714 | - | 0.648459 |
| NA | SPOA0380 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | megaplasmid | CDS | 426750 | 1308 | + | 0.663609 |
| NA | SPOA0233 | glycine betaine/proline ABC transporter, permease protein, putative | SubName: Full=Glycine betaine/proline ABC transporter, permease protein, putative; | megaplasmid | CDS | 254412 | 1575 | + | 0.629206 |
| NA | SPOA0068 | polar amino acid uptake family ABC transporter, ATP-binding protein | SubName: Full=Polar amino acid uptake family ABC transporter, ATP-binding protein; | megaplasmid | CDS | 67577 | 801 | + | 0.635456 |
| NA | SPOA0379 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 425152 | 1473 | + | 0.67685 |
| NA | SPOA0098 | branched-chain amino acid ABC transporter, permease protein | SubName: Full=Branched-chain amino acid ABC transporter, permease protein; | megaplasmid | CDS | 98700 | 870 | - | 0.621839 |
| NA | SPOA0101 | branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative | SubName: Full=Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative; | megaplasmid | CDS | 100984 | 1281 | - | 0.627635 |
| NA | SPOA0385 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | megaplasmid | CDS | 432275 | 1293 | + | 0.702243 |
| NA | SPOA0145 | pyridoxal-phosphate dependent enzyme | SubName: Full=Pyridoxal-phosphate dependent enzyme; | megaplasmid | CDS | 155809 | 954 | + | 0.621593 |
| NA | SPOA0097 | branched-chain amino acid ABC transporter, permease protein | SubName: Full=Branched-chain amino acid ABC transporter, permease protein; | megaplasmid | CDS | 97765 | 939 | - | 0.644302 |
| NA | SPOA0064 | NG,NG-dimethylarginine dimethylaminohydrolase, putative | SubName: Full=NG,NG-dimethylarginine dimethylaminohydrolase, putative; | megaplasmid | CDS | 63234 | 783 | - | 0.65645 |
| NA | SPOA0164 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | megaplasmid | CDS | 180424 | 1386 | + | 0.608947 |
| NA | SPOA0409 | tryptophan 2,3-dioxygenase, putative | RecName: Full=Tryptophan 2,3-dioxygenase; Short=TDO; EC=1.13.11.11; AltName: Full=Tryptamin 2,3-dioxygenase; AltName: Full=Tryptophan oxygenase; Short=TO; Short=TRPO; AltName: Full=Tryptophan pyrrolase; AltName: Full=Tryptophanase; | megaplasmid | CDS | 455624 | 837 | + | 0.615293 |
| NA | SPOA0020 | alanine racemase domain protein | SubName: Full=Alanine racemase domain protein; | megaplasmid | CDS | 16728 | 1173 | - | 0.658994 |
| NA | SPOA0431 | tetracycline resistance protein | SubName: Full=Tetracycline resistance protein; | megaplasmid | CDS | 478537 | 1200 | - | 0.655 |
| NA | SPOA0210 | integral membrane protein | SubName: Full=Integral membrane protein; | megaplasmid | CDS | 231416 | 840 | - | 0.671429 |
| aroA | SPOA0015 | 3-phosphoshikimate 1-carboxyvinyltransferase | RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; | megaplasmid | CDS | 12930 | 1347 | + | 0.683742 |
| gabT | SPOA0274 | 4-aminobutyrate aminotransferase | SubName: Full=4-aminobutyrate aminotransferase; EC=2.6.1.19; | megaplasmid | CDS | 301297 | 1278 | + | 0.668232 |
| gcvH-2 | SPOA0058 | glycine cleavage system H protein | megaplasmid | CDS | 53059 | 441 | + | 0.566893 | |
| gcvP | SPOA0059 | glycine dehydrogenase | RecName: Full=Glycine dehydrogenase (decarboxylating); EC=1.4.4.2; AltName: Full=Glycine cleavage system P-protein; AltName: Full=Glycine decarboxylase; AltName: Full=Glycine dehydrogenase (aminomethyl-transferring); | megaplasmid | CDS | 53556 | 2859 | + | 0.645331 |
| gcvT | SPOA0057 | glycine cleavage system T protein | RecName: Full=Aminomethyltransferase; EC=2.1.2.10; | megaplasmid | CDS | 51916 | 1098 | + | 0.638434 |
| hisD-2 | SPOA0202 | histidinol dehydrogenase | RecName: Full=Histidinol dehydrogenase 3; Short=HDH 3; EC=1.1.1.23; | megaplasmid | CDS | 214950 | 1302 | + | 0.683564 |
| hpcD | SPOA0320 | 5-carboxymethyl-2-hydroxymuconate delta isomerase | SubName: Full=5-carboxymethyl-2-hydroxymuconate delta isomerase; EC=5.3.3.10; | megaplasmid | CDS | 360331 | 378 | + | 0.65873 |
| livF-2 | SPOA0296 | branched-chain amino acid ABC transporter, ATP-binding protein | SubName: Full=Branched-chain amino acid ABC transporter, ATP-binding protein; | megaplasmid | CDS | 325158 | 723 | - | 0.586445 |
| livG | SPOA0297 | branched-chain amino acid ABC transporter, ATP-binding protein | SubName: Full=Branched-chain amino acid ABC transporter, ATP-binding protein; | megaplasmid | CDS | 325884 | 783 | - | 0.553001 |
| megL | SPOA0318 | methionine gamma-lyase | SubName: Full=Methionine gamma-lyase; EC=4.4.1.11; | megaplasmid | CDS | 356420 | 1203 | + | 0.655029 |
| opuAA | SPOA0232 | glycine betaine/proline ABC transporter, ATP-binding protein | SubName: Full=Glycine betaine/proline ABC transporter, ATP-binding protein; EC=3.6.3.32; | megaplasmid | CDS | 253363 | 1053 | + | 0.619183 |
| speB-4 | SPOA0235 | agmatinase | SubName: Full=Agmatinase; EC=3.5.3.11; | megaplasmid | CDS | 257036 | 987 | + | 0.643364 |
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