Gene list
Applied filters:
COG category: Unclassified
Genomic element: pCP301
Number of genes found: 81
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Shigella flexneri 2a str. 301, 301 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | CP0034 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 29339 | 183 | - | 0.415301 |
NA | CP0272 | IS629 ORF1 | SubName: Full=IS629 ORF1; | pCP301 | CDS | 221216 | 168 | - | 0.422619 |
NA | CP0061 | IS1294 ORF | SubName: Full=IS1294 ORF; | pCP301 | CDS | 46083 | 1209 | + | 0.575682 |
NA | CP0064 | putative IS1 encoded protein | SubName: Full=Putative IS1 encoded protein; | pCP301 | CDS | 49511 | 198 | - | 0.484848 |
NA | CP0164 | IS1294 ORF | SubName: Full=IS1294 ORF; SubName: Full=IS1294 orf; | pCP301 | CDS | 74712 | 267 | - | 0.576779 |
NA | CP0219 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 178125 | 180 | + | 0.405556 |
NA | CP0038 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 31392 | 420 | + | 0.530952 |
NA | CP0096 | putative IS91 ORF2 | SubName: Full=Putative IS91 ORF2; | pCP301 | CDS | 82466 | 189 | + | 0.433862 |
NA | CP0050 | putative IS1 encoded protein | SubName: Full=Putative IS1 encoded protein; | pCP301 | CDS | 38612 | 213 | - | 0.474178 |
NA | CP0201 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 165663 | 216 | + | 0.574074 |
NA | CP0266 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 216182 | 153 | - | 0.444444 |
NA | CP0028 | ISSfl3 ORF | SubName: Full=ISSfl3 ORF; | pCP301 | CDS | 23820 | 1224 | - | 0.441176 |
NA | CP0167 | orf, conserved hypothetical protein | SubName: Full=ORF136; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 139920 | 405 | - | 0.493827 |
NA | CP0262 | IS1294 ORF | SubName: Full=IS1294 ORF; | pCP301 | CDS | 211427 | 1197 | - | 0.578947 |
NA | CP0060a | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 45830 | 273 | + | 0.494505 |
NA | CP0169 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 142682 | 429 | + | 0.519814 |
NA | CP0090 | putative IS1294 ORF | SubName: Full=Putative IS1294 ORF; | pCP301 | CDS | 74709 | 363 | + | 0.556474 |
NA | CP0014 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 11327 | 579 | - | 0.312608 |
NA | CP0023 | orf, hypothetical protein | SubName: Full=ORF22; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 20087 | 315 | + | 0.495238 |
NA | CP0264 | putative transposase | SubName: Full=Putative transposase; | pCP301 | CDS | 212967 | 168 | + | 0.482143 |
NA | CP0197 | orf, hypothetical protein | RecName: Full=Uncharacterized protein YubC; | pCP301 | CDS | 164152 | 312 | + | 0.621795 |
NA | CP0161 | putative IS1294 ORF | SubName: Full=IS1294 ORF; SubName: Full=Putative IS1294 ORF; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 137785 | 189 | + | 0.566138 |
NA | CP0162 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 137953 | 357 | - | 0.579832 |
NA | CP0043 | IS1294 ORF | SubName: Full=IS1294 ORF; | pCP301 | CDS | 33960 | 1200 | + | 0.576667 |
NA | CP0160 | putative IS1294 ORF | SubName: Full=Putative IS1294 ORF; | pCP301 | CDS | 137606 | 165 | + | 0.551515 |
NA | CP0016 | putative IS91 ORF2 | SubName: Full=Putative IS91 ORF2; | pCP301 | CDS | 13227 | 186 | - | 0.532258 |
NA | CP0261 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 211006 | 192 | + | 0.53125 |
NA | CP0097 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 82115 | 390 | - | 0.487179 |
NA | CP0209 | orf, conserved hypothetical protein | SubName: Full=ORF169b; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 171972 | 639 | - | 0.367762 |
NA | CP0168 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 140876 | 717 | - | 0.313808 |
NA | CP0175 | IS91 ORF | SubName: Full=IS91 ORF; | pCP301 | CDS | 144804 | 357 | - | 0.52381 |
NA | CP0071 | putative IS1294 ORF | SubName: Full=IS1294 ORF; SubName: Full=Putative IS1294 ORF; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 57241 | 189 | + | 0.566138 |
NA | CP0102 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 85560 | 420 | - | 0.314286 |
NA | CP0072 | IS1294 ORF | SubName: Full=IS1294 ORF; | pCP301 | CDS | 57439 | 1200 | + | 0.576667 |
NA | CP0042 | putative IS1294 ORF | SubName: Full=IS1294 ORF; SubName: Full=Putative IS1294 ORF; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 33762 | 189 | + | 0.566138 |
NA | CP0263 | putative IS1294 ORF | SubName: Full=IS1294 ORF; SubName: Full=Putative IS1294 ORF; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 212633 | 189 | - | 0.566138 |
NA | CP0119 | putative transposase | SubName: Full=Putative transposase; | pCP301 | CDS | 99455 | 777 | + | 0.57529 |
NA | CP0092 | IS1294 ORF | SubName: Full=IS1294 ORF; | pCP301 | CDS | 76328 | 930 | - | 0.565591 |
NA | CP0111 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 91689 | 165 | + | 0.587879 |
NA | CP0186 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 156758 | 186 | + | 0.419355 |
NA | CP0200 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 165429 | 201 | + | 0.567164 |
NA | CP0176 | putative IS91 ORF2 | SubName: Full=Putative IS91 ORF2; | pCP301 | CDS | 145160 | 423 | - | 0.470449 |
NA | CP0015 | IS91 ORF | SubName: Full=IS91 ORF; | pCP301 | CDS | 12871 | 357 | - | 0.521008 |
ccdB | CP0225 | post-segregation toxin | SubName: Full=CcdB; SubName: Full=CcdB protein; SubName: Full=Post-segregation toxin; | pCP301 | CDS | 180739 | 327 | + | 0.504587 |
finO | CP0251 | FinO, putative fertility inhibition protein | SubName: Full=FinO, putative fertility inhibition protein; | pCP301 | CDS | 204898 | 561 | + | 0.566845 |
icsB | CP0132 | IcsB, invasion protein | RecName: Full=Virulence protein IcsB; | pCP301 | CDS | 114564 | 1485 | - | 0.338721 |
ipaA | CP0125 | IpaA, secreted by the Mxi-Spa machinery, modulates entry of bacteria into epithelial cells | RecName: Full=Invasin IpaA; AltName: Full=70 kDa antigen; | pCP301 | CDS | 107178 | 1902 | - | 0.351735 |
ipaC | CP0127 | IpaC, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells | RecName: Full=Invasin IpaC; AltName: Full=42 kDa antigen; | pCP301 | CDS | 110137 | 1092 | - | 0.389194 |
ipaD | CP0126 | IpaD, secreted by the Mxi-Spa machinery, required for entry of bacteria into epithelial cells | RecName: Full=Invasin IpaD; AltName: Full=36 kDa membrane antigen; | pCP301 | CDS | 109088 | 999 | - | 0.357357 |
ipaJ | CP0122 | IpaJ, invasion plasmid antigen | RecName: Full=Cysteine protease IpaJ; EC=3.4.22.-; AltName: Full=Effector protein IpaJ; AltName: Full=Invasion plasmid antigen J; | pCP301 | CDS | 104066 | 780 | + | 0.378205 |
ipgA | CP0131 | IpgA, similarities to IpgE, putative chaperone | RecName: Full=Chaperone protein IpgA; | pCP301 | CDS | 114162 | 390 | - | 0.302564 |
ipgB1 | CP0130 | IpgB1, secreted by the Mxi-Spa machinery, function unknown | RecName: Full=Protein IpgB; | pCP301 | CDS | 113520 | 627 | - | 0.344498 |
ipgB2 | CP0024 | IpgB2, probably secreted by the Mxi-Spa secretion machinery | SubName: Full=IpgB2; SubName: Full=IpgB2, probably secreted by the Mxi-Spa secretion machinery; | pCP301 | CDS | 20683 | 567 | + | 0.326279 |
ipgD | CP0133 | IpgD, secreted by the Mxi-Spa machinery, modulates entry of bacteria into epithelial cells | RecName: Full=Inositol phosphate phosphatase IpgD; EC=3.1.3.78; AltName: Full=Effector protein IpgD; AltName: Full=Phosphatidylinositol 4,5-bisphosphate 4-phosphatase; | pCP301 | CDS | 116362 | 1617 | + | 0.357452 |
ipgE | CP0134 | IpgE, cytoplasmic chaperone for IpgD | RecName: Full=Chaperone protein IpgE; | pCP301 | CDS | 117988 | 363 | + | 0.349862 |
mkaD | CP0010 | mouse killing factor | RecName: Full=Phosphothreonine lyase OspF; EC=4.2.3.-; AltName: Full=Effector protein OspF; | pCP301 | CDS | 9576 | 720 | - | 0.381944 |
mob9 | CP0228 | plasmid mobilization protein | SubName: Full=Plasmid mobilization protein; | pCP301 | CDS | 184482 | 180 | - | 0.466667 |
mxiH | CP0137 | MxiH, component of the Mxi-Spa secretion machinery | RecName: Full=Protein MxiH; | pCP301 | CDS | 119940 | 252 | + | 0.337302 |
mxiI | CP0138 | MxiI, component of the Mxi-Spa secretion machinery | RecName: Full=Protein MxiI; | pCP301 | CDS | 120204 | 294 | + | 0.35034 |
mxiK | CP0140 | MxiK, putative component of the Mxi-Spa secretion machinery | RecName: Full=Protein MxiK; | pCP301 | CDS | 121225 | 528 | + | 0.339015 |
mxiL | CP0142 | MxiL, secreted by and putative component of the Mxi-Spa secretion machinery | SubName: Full=MxiL, secreted by and putative component of the Mxi-Spa secretion machinery; | pCP301 | CDS | 122382 | 408 | + | 0.306373 |
mxiM | CP0143 | MxiM, lipoprotein, component of the Mxi-Spa secretion machinery | RecName: Full=Lipoprotein MxiM; Flags: Precursor; | pCP301 | CDS | 122773 | 429 | + | 0.298368 |
mxiN | CP0141 | MxiN, putative component of the Mxi-Spa secretion machinery | SubName: Full=MxiN, putative component of the Mxi-Spa secretion machinery; | pCP301 | CDS | 121694 | 696 | + | 0.318966 |
ospC1 | CP0094 | OspC1, secreted by the Mxi-Spa secretion machinery, function unknown | SubName: Full=OspC1; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 79939 | 1413 | - | 0.318471 |
ospC2 | CP0063 | OspC2, probably secreted by the Mxi-Spa secretion machinery, function unknown | SubName: Full=OspC2; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 47740 | 1455 | - | 0.325086 |
ospC3 | CP0005 | OspC3, probably secreted by the Mxi-Spa secretion machinery, function unknown | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 3471 | 1275 | - | 0.316863 |
ospC4 | CP0115 | OspC4, probably secreted by the Mxi-Spa secretion machinery, function unknown | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 95295 | 1455 | + | 0.315464 |
ospD2 | CP0009 | OspD2, probably secreted by the Mxi-Spa secretion machinery, function unknown | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 7435 | 1710 | - | 0.331579 |
ospD3 | CP0093 | OspD3 (SenA), probably secreted by the Mxi-Spa secretion machinery, function unknown | SubName: Full=Putative uncharacterized protein ospD3; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 77913 | 1698 | - | 0.357479 |
repA | CP0260 | RepA, replication protein | SubName: Full=RepA; SubName: Full=RepA, replication protein; | pCP301 | CDS | 209448 | 858 | + | 0.578089 |
repB | CP0258 | RepB, replication protein | RecName: Full=Replication regulatory protein repA2; AltName: Full=Protein CopB; | pCP301 | CDS | 208897 | 261 | + | 0.417625 |
spa15 | CP0148 | Spa15, putative component of the Mxi-Spa secretion machinery | RecName: Full=Surface presentation of antigens protein SpaK; AltName: Full=Class 1B type III secretion system chaperone spa15; | pCP301 | CDS | 128822 | 402 | + | 0.333333 |
spa9 | CP0154 | Spa9, component of the Mxi-Spa secretion machinery | RecName: Full=Surface presentation of antigens protein SpaQ; AltName: Full=Protein spa9; | pCP301 | CDS | 133360 | 261 | + | 0.344828 |
stbB | CP0194 | plasmid stable inheritance protein | SubName: Full=Plasmid stable inheritance protein; | pCP301 | CDS | 161459 | 396 | - | 0.388889 |
tap | CP0259 | TapA | RecName: Full=Positive regulator of RepFIC repA1 expression; AltName: Full=RepA1 leader peptide; | pCP301 | CDS | 209381 | 75 | + | 0.493333 |
traD | CP0243 | DNA transport protein | SubName: Full=DNA transport protein; | pCP301 | CDS | 197923 | 186 | + | 0.543011 |
traX | CP0250 | F pilin acetylation protein | SubName: Full=F pilin acetylation protein; | pCP301 | CDS | 204097 | 747 | + | 0.576975 |
yccB | CP0196 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 163184 | 972 | + | 0.540123 |
yceA | CP0199 | orf, conserved hypothetical protein | SubName: Full=ORF161b; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 165211 | 222 | + | 0.531532 |
ycfA | CP0202 | orf, conserved hypothetical protein | SubName: Full=ORF163; SubName: Full=Uncharacterized protein; | pCP301 | CDS | 165923 | 771 | + | 0.607004 |
yigA | CP0252 | orf, conserved hypothetical protein | SubName: Full=Uncharacterized protein; | pCP301 | CDS | 205589 | 213 | + | 0.615023 |