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Gene list

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COG category: Intracellular trafficking and secretion
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 16

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# Photobacterium profundum, ss9

>PBPRA2502 Hypothetical protein
MIRLTFLFTLLLLQVGCVTSTTQHTVTESDLKAVGNYAGLINYYKTALIA
SPNDPKVMLSLADAYYRNKDIESARFYVDQLEKLNYRGATFSFLAGNVYA
ASNDYSHALTAYQYAKQQGYSASDLDLEMGIVYSYTGQYLLAKEAFDQAR
LKGHDDIAIKNNLAVLAIAQAHYQQAVDILLPVFQHSPEQQKVSLNLAIA
LIQLGDIPQAKQVLGERITDEQLMALVYALRVSGNTENKERHKISNEEQH
EPA
>PBPRA2495 Hypothetical protein
MNSKIIFVIAFLAVLTGLYGMADTLLSTTDTASPPVTEEKEIKYITVWRA
TSALARGQTLSPSSLTREQLTEEAALSLGINSDVTLNFEPTTLMNMDVKQ
GALVFPELQTSPGQAGYLNLITRGDMTLYPLTIASKNLIDNYIQPGDYID
IMAVSSPRTNLSNTTSTLENFEGVRASLLMRRIRVMSVGQSNTLAEKADQ
RATITSTIRPKVNISNENESTVVIEVNPDDLAKLSLAQRTMYIEIYRSQH
YRQTPDADVSDVIKNYTGIVELRGAGRDRLGEVF
>PBPRA2654 hypothetical protein
MPNLPKFVTRFILPVAFVTTVFHLPVQANTVRIIGPSDDDQPFTVSDRYR
DTGVANSYSSLANNQANSLYGPTTANETLWGIASRYRPNNSVSIYQVIGA
IHRANPQSFENNNIHGLVPGSQLRMPTMAQIQREDVASVKRRLEADQRRQ
TRSASTTSRTTKAVKSSTQSTAQVVATPIAKPEKAKVESVTPPKARSTSQ
QSTSERAFIPAKPEPTELQEQLDASDEQMTKLLESNHLLRVRLSEMQYEV
SALKDQITDDEALRGEIISFLEQQKEQVQVQTADTEPSWFDQFISNPWLL
AAAALIPGGLIAGAIAFFMLRRRKDDEDSDIKSLENQEGKELPIAPAPLT
ADTTDSESDLMLSEDQDIDDLFASDDSLFGNPEESLFDNDSNSASSEVLD
DTASLDLSSDLDDEFGLDLDSNRGLSSRSISVKGDDQAIGLEDMERALDQ
MEPSSELSSDEALAAMWEKSLQEQADDEPDFDLSDDADNEFDSDLMSSNS
IEDGLLDQSILDDLLAEVEAENENEDTKNNTTVFSETLEANIEESAASNA
EEVVDQSELDALFDSFDSSDTDLSSENSTSDDAEQAAVDQALADAEAMFN
PAVVTESDYFSAQESDVAEDSTAQQTDFDLNSEADVSDELIFEEGSTALL
DDIVEDDEFSSDIEIEENSTALLDELLSDGSTDDEELTSTIEIDENSTAL
LDELIGDAEVDDDTDIDANSFYEEELEDNTELDQLIIDENSTDLLDEILE
HKNHVVDADDKVAAGHLTEPNLLDDNIQDEFSDPEFENALSTPLQEQQGL
AKEDVTNKPDADFPESEAAAFDAILNEALQADEVAKNTSEKAVLESATDD
VSTDKPADDVDALIADIDHVINEIDADESEDNDVETIERSVTDLLEELDA
AEALGAENENENESKSKSEEHPIVDLDDFPIFDEETALSELDERSPARDS
NPIGSQVGESLSVEELPEFDEDTAFNDPEADALEDDLSLLSEDDERIALD
NVVKNLQQAVEASESYGNNVAQPPRAETSFEHEHEHEHESASAFEAIDPT
TLPEFSEDDALQASLEEQNELEQYELEQGLKITSPVAQAASQNATDSQVD
ARFQEPAADMFDEDLVDSAGLDMEALLTEPVAMSTEAMFTETMGEQAIET
QAMSEQVIAEQQAEDKVLSPSKPNVELDDPIVPEHTKQDAKVSVNQEIEA
AERDGLLFDEQLGNTEQDLDFNSLDFMNSDMIENDAIDLSVPEEDAAVWA
GSTPEPELESEDWSIQPEMQVEDVTSFDPESLIEESEEPALTFAEPASVL
LDEEEPLASPYISIDELMKEEEVTNPVDLDAEPLNLEVGLDEFPDVLAGI
ESYDVDSHGEYSSKLDLAKAYLEMNDAEGAIGLLEEVAQKGDSVSQREAT
KLLAQYKR
>PBPRA2504 hypothetical protein
MGSPRQQRGAAGIYTALALIPLFGMIFWALEGTRYIQKKNRLADATEAAT
LAVTTANQDDKTYENQLATNYVQTYIRNIAIINDIKVERSEGIDYYPTPD
GNEEREYFQYRVTAKTDHTSWLSSDIIPSFSPTETVANRALARNYPIYLG
DKDIDIVFVSDFSGSMKGNKIRALKDAIQAIANEILVPRDGEVEVTNRIA
FVPYNMRVQEKRSNTRWCLTQLDYRPNFNGGNYSSYEDIDWSTWSTWTRN
QVRDCSNGYYSCTGKKRRDARTVYAILNTSKSETGSGWYFPDPYSYINFP
DSVAKTFTAKANNLQFQSTNQKLYSGGMCSGNFWTIPLTSEKTTLSPIQN
NMSPDGGTSVYQGLIRGAQILEQGRPTSPSPETSAAYNSRIKMILMLSDG
QEMPYVSTFNQLVNQGLCNTIKAQFNDSDQQLYMGVLGIEFDAQGQQGFK
NCVGQNNITNVDDVDDLIKEILEMIKEGSKTDGISKLYYRHLES
>PBPRA2498 hypothetical protein
MFDLAKAISQTTEKSREHQGPTGCTLFYQTDACLNLVQEVFRFEGWQAPD
CLKNQSQGTDYSYKKNNKLEHSTLQEIIILELNQSTNVVDDAKSFASRLP
NHKGVVVIGKEDAITTLRGLKEMGFYYLFWPANKQEITDFLRHVHSNQQR
FAGVSQNRKAKRVAVLGSKGGVGNTVISAELAACLAHSGAETILIDHQYA
FSNIDIVLGLKQFQKQDANNLALQLHDMDEATASDYLIKVTDHLRLLAIE
GNEPTSTLQSYTDSINDLLMRQANFIIEDFSGSVDFSLNLHQLVERHDVM
IIVVEPTVSSVRSARFRIEQIEEISLTNSLDIRVLTFMNVHRPDVAFSLT
GEEVSTYLGRVVDVTLQYDKRFASLLLDGKRLHKLEKSAAGPFNDMALLL
HGKTLRNHRSSMAKLKGLFKR
>PBPRA2494 HD1309, Hypothetical membrane protein
MNISLQLMPLLMLWVTYSDIRYRRISNIVCAAVFSLSLTLAFSQHQLADG
IISSIIMFLISLLLFYFNIVAAGDGKLASAFAVALSPQQLISALYFTLLF
GGVVAVIYLIKYQLIQRRSPEKARGLPYGVAIACGFGLQIFASYL
>PBPRA2637 PLU3869, putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus CMCP6]
MSYQERNAMSPITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE
DHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPN
VSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQ
IHAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAVEYGLVD
SVLTQRD
>PBPRA2500 PM0848, hypothetical Flp pilus assembly protein TadB
MSIYLSLLLFGVAILLHKRRQRSLKDIFFADPSNDPDDDSIQAVNIESLK
HLTWWRVLLINFAPAFAMLGDKAWLKLAIFMMLLTAVGVYINNSLLLLNS
YWLPLLMPTLGFFWGWAWLLKKRRDEFEQTFPDALNIMMSAVTAGESIMQ
SISYVGKTLDNKVGAVFQDMGERLKLGEPPEQVFKRASKHYPYPTFLFFV
VTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAMTSEARLSAKIVAS
LPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLLIRG
VR
>PBPRA2499 RA0852, putative Flp pilus assembly protein
MNTNKELYLTFRNQIFEVLDAQAIVKMSKEELVKQIQNAVDVLASNYHRP
VSTAMRNLLVKNLVDELVGLGPLQPLIEDDTITDIMVNGANHIFFERNGK
LQHSDVVFINEAQLLEIAQRIASRVGRRVDESSPMVDARLEDGSRVNIVI
KPIAIDGTTISIRKFREHKIGLEELVTFGSLSPDMARVLMIAARCRLNIL
ISGGTGSGKTTLLNALSNFISEDERIVTIEDAAELKLQQPHVVRLETRTA
SIENTGAISQRELVINSLRMRPDRIILGECRGSEAFEMLQAMNTGHDGSM
STLHANTPRDAISRVESMVMMASLNQPLDAIRRTIVSAVHLVVQVNRQRD
GSRKITSLSEVVGLEGENVVMEELFRFQTLEGKPNDKVRGEFVTQGIMQR
SILMQRATYYGLQDELVAAFRGHQ
>PBPRA2496 RCPA, hypothetical Flp pilus assembly protein
MFNPFRSFPPFSTTVISMMMLCLSTSVFAADKFITLNDANNLEFPQEIGT
VFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLSQRYHVDI
NLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLL
GKKEIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQV
NVKISVAQVTKEFNETIGVDWSTVGRSVGEFSFLKFKANDLSTVINAIGN
DNIAEILAEPNLTVLSGESASFLVGGEVPVIVTNDNSTNISFKEFGIKLE
LSAKVLSNKSIKLQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADG
DSFMLGGLMSSDDIEEISKIPLLGDIPILGAAFRKSSTTRKKTELVIVAT
VNLVKPVSPTDVRLPHMRKTTTLRRLFNIAQNEESAEYQQTNQTHAEKLV
IQMLSEGGFIQ
>PBPRA2595 S1572, putative protease IV
MKAIFKGIGRIFRAIWKLISFTRQLILNLFFLIIVGAIFVAFNYGEDTPE
QPDKAALVLDLSGPIVEQRRYINPIDSIASNVLGHPPAQDNVLFDITETI
RKASADNKIEGLVLNLKGMSETSLTKLRYIAKAITEFKAAGKPVYAYGDN
FGQSQYYLASYADKVFMSPDGGVMLTGYGSYSLYYKSLLEKLNVNTHVFR
VGTYKSFVEPYTRDDMSAPAREANTVWLNQLWGAFTTDVANNRHIDAATL
TPNIDDFVQALKAVDGDFAKLSLKMGLVDELISRPQLRNKMIKEFGSDGE
HSFNQISYYEYQPTIINTDLPSDNQIAVVVASGAIIDGTQRQGTVGGDST
AALLRDARLDDDIKAVILRVDSPGGSAFASEVIRNEVDALKQAGKPVVVS
MSSVAASGGYWISASADRIIAQPTTITGSIGIFAILTTFEKGLEKMGVYS
DGVGTTPFSGVGVTRELPEGVGQVFQLGVEHGYKRFISLVSQYRNMSLEQ
ADKIAQGRVWTGQDAMELGLVDQLGDFDDAIAAAVELAKLESYELNWMEE
PLSTAEQFLQQFSSDVSTKVATMVLGQLPSALQPVTQQVVTDYTTLSNFN
DPKGQYAFCLNCSNIEK
>PBPRA2552 STY0792, putative tolR membrane protein
MAYQPKKRKLTAEINVVPYIDVMLVLLIIFMVTSPFVTQGVDVELPTTQT
AKTVADLYKDNSGAPIIVEVDQNGNLGLSVDNGDMLRGLVLNDLLTRVKA
ELQLNPKSLVMVGGDGRVPYSFIIETLDALSQAGVGSVGLMTEPLEQ
>PBPRA2501 TADC, hypothetical Flp pilus assembly protein TadC
MIFVLISLFVLSAVCAWKLSQWHTEQAKQAHVESYLSAKKDGRLTRLNRF
ITHLGKNHQQDLEQQFVDAGFYNTQFTKYYVPAKLTLVIFTCVVVLMSDL
SFTNQAAIGAVAMIAILLVPEMVLSMRKKALILKTSRQLPYMLDMMSVCV
QTGMTIEAALTYLSTELEAFDRDLCFHIKKTADSARVKGLEKALIELSER
IPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGKLA
AKMSVPLILLIMFPIVILILAPGMMQMTVDIGQ
>PBPRA2550 VV2275, putative TolB protein
MMKRWMMGLCIALLSFSQIAQAELELVITEGIDSARPIGIIPFTWEGEGK
LPTDISSVIASDLQRSGKFSPIATSKMPQTPDSEEQIDYRAWTAMGVDAL
VTGKVTKNAEGNYVVNYQLVDVVRGQLTSGESRGLANGELVLTKDHLLVN
NRAIVKETRLRQYAHRISDVVYEALTGEQGAFLTRIAYVVIDDKSKHPYQ
LRVADYDGFNERLVLKSRQPLMSPAWSPDGSKLAYVSFENQQAQIYIMDI
YKGTRELVTSYPRHNGSPRFSPDGKKLALVLSKTGSLQIYIKDLKTKKLT
QITSGRANNTEAFWDPDGKSLIFTSDRGGQPQIYRVNLADNSTKRLTWQG
SQNLGGQLTPDGRYLVMVNRSDTGFNIAKQDLKTGAVQILTKTFLDESPS
IAPNGGMVIYSSVNNKSNELSLVSIDGRFKARLPTTNGRVRAPSWGPFL
>PBPRA2553 Y3058, Putative TolQ protein
MSAELSILDLFLQASLLVKIVMLILLGMSVASWAMIIKRSQILSNAASKA
GRFEDRFWSGVDLSQLYKEVEARKDDLMGSEQIFYTGFKEYARLHRSNGQ
VPDAVMEGTSRAMRVSLLREVDELETSLPFLATVGSISPYIGLFGTVWGI
MHAFIALGAVKQATLAMVAPGIAEALVATAMGLFAAIPAVMFYNKLTNQV
SKLEHTYATFMEEFSSILHRQAFAANQE
>PBPRA2480 YPO2216, putative sohB protein, peptidase U7 family
MEFLFDYGLFLAKIATVVIALVGILVLAKGLNGRHGSQKGELEVTDLTEQ
YKNTVHQLEEHLFDKPLLKARDKATKKEDKEKEKARQNEIKKAAKEGDLS
HVRESRLFVIDFHGSIDAREVSSLREEVSAIIAVAIEGDEVLLRLETGGG
MVHGYGLASSQLDRLKSAGIKLTISVDKVAASGGYMMACVADKIISAPFA
IVGSIGVIAQLPNFSKVLKKHDIEFEQITAGEFKRTLTMFGENTDKARDK
FQVEIEETHGLFKDFIAIHRPELDLEKVATGEHWFGNQALNLGLVDEIGT
SDDFITHACKDREVLNVRFVQRKKLAEKLAGATGEAADNLLLKWVSRGQR
PFM