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COG category: Intracellular trafficking and secretion
Gene type: CDS
Genomic element: chromosome

Number of genes found: 24

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# Tropheryma whipplei TW08/27, TW08/27

>TW105 putative integral membrane protein
MFAAQALCICPFLMLVQLALYIASFASGTIVPHDPINLSVILMFGVILPT
FIGILFVHNEDNPVQAFAGYFVVSIIAMVTYLAISVTGQIFLLILFTEAI
VAIPLTILAVQAVRKSERYA
>TW581 putative membrane protein
MIGQIALSVLFAVTLGCGIASLTFMLSPVSTFRRRLTPYLSRLSQDMCFS
FRRPLYRELFGVFRIYLNRFYRTQPSGKLAGLLEISNRDQSVVDFRITQI
AISALLTGVFWVLFCLLLFSGQVNIVFGLLAPAVFAGSFWCIENNLRRYV
KKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKV
LIGVSSGDTLERCLKRMAAKLDIVSIDRAVSQIITAIERGTPLADILIKQ
AKEARNATRVALIEQAGKKEIAMMFPLVFFILPVTILFAIFPGIQIFH
>TW184 putative peptidase
MTKPVAYSIYALIVILTGIGLGIIGLPFATLAFIAIFVSTPALFRADIRE
LRLPNAITLPLIAIGIVALLADQIVHPNLDIVFSALIAIGLSSFLFIVSI
FGGMGMGDVKLSLALLLCAANLGPAFPIIAISSAFLVAFCFCILIFVGLF
RFFKNSGRISCLPFGPFLLLGFWTTVIVWGIDRWTDVDILRIIW
>TW719 putative integral membrane protein
MHRTLENRKLPLEEIASITCTLAVLLDGGITPASAWKHASHTTDNYPKQF
TAACLAAGSGRDIAAGIRESDFSGLESPEKHAWFALAAAWWVGTRSGANM
ANSLLSLSRAFSHIASVQREAQVAMAGPSSTAKIVGFLPIFSLVLSAALG
FGALNVLLFSIPGLLCLSGGLLLMFIYKRWTGSMITKSAPQDNSPGLDYE
LCIIAVSGGGAITLAWECVRDAMRHFNLPIVNAKRIDQIISLSFSSGAPA
GKLLRAESELAQLQARTEAQKQVQRLAVKLMLPLGLCILPAFMLIGIVPL
VISMISGGIL
>TW500 putative secreted protein
MSLELLFPIALVLLLVAFFFSQMKRKREMAALQAKLLPGVCVMTSFGLFG
TLKNIDDEKALLEIAPGCVVSVHARTIARVEELQAPGEQVLDERPEDTDV
LRSPEGASVSVSKNTSRSASRRSGATKQAVKQRSAAGKTGAARSAASSSA
APKARSTRSARDK
>TW107 putative integral membrane protein
MTQAFSRRSPFRKIKLVTAILSSSFALSMITVFVSFMYLVAITDPSSGVE
QYHSLIFNTIYIRTEPSSKGVHIDISVGLLAVILPFLFFTIIISLCVFFY
KKFIKNKKTTKSKKLPLK
>TW314 putative DNA processing protein
MKPLCFSEELSEDQAVDYFARAAWSLISEPGDRIAGRLISCMTAPRALGW
LLGNISLPFTLDEFESQQLEKHRSVWKMRADYQQLLKSFQAAHHTGAKLV
VTDKYNKLQDEKPHILWVKGNSPSILLDTSQKVSIVGTRCCSYYGKSVTA
DISYSLARKNYVIVSGGALGIDGTAHMSALSAGKSTIVFFAGGVDWIYPR
GNEALFSKICESGIIVSEMPCGSRPTKWRFLRRNRLIAAIPSAVVVTEAA
ARSGSISTAYHAADVQVPVGAVPGPINSPLSEGCNRLIRDRIAESVTCAD
DVVGLFAPLVVSPIQKDSFGLQASRIRVIDALSKKYDRDISEICRLSGML
FDDVSSLMRLLELSGQVIRSGSGWRLSGRLR
>TW582 putative membrane protein
MNRAPLYLRTWRLMLSVALSLLLSAGNLFLLAKSKPSRRYSRFDKFHSRL
IAVGLRNVSLGSFVSLTVLFGVVFAAIITLVTGIYIFCVFGFLIGIATPI
LIVNYQYRRLVSLDSNIWPDIVENVISAVRVGMGLPEALCSLSRFGPVRI
RQIFCNLENEYGATGNFASAVANAKCALADPKADRILETVQLARSLGGSE
LIKVLRNLSEYMREDLATRAEIVGRQSWVVNAARIAVAAPWAVLAIMSTR
AETVSAYNSQAGVVVIILGALSCAIAYKIMMVVARIPQEERYMG
>TW815 conserved integral membrane protein
MFDGLFDFLQNILLPIKWVIEQILVFFHTLLGFLGFGDKSGLSWALSIVG
LVIVIRATLIPVFLKQIRAQRKMLEIAPEVRRIQEKYKGKRDVLSRQSMN
QEMMEIYRVRGANPLSSCLPIVLQMPVFFGLYQVIESAQNAGTGVGPLNG
PLGMDFRDSRIFGVVPLHDSFSHDFYALQAGQAFNLITMIVAGVLTAIMI
AVQLFTQLKVIPKNIPENAKNTSVYKNQKVMLYLLPIMFLGMGFSFPVGI
LIYWTASNVWSGVQQAVAIYRNPSPGSLAFELRRKRLGVQNKKTKGQRQQ
PVNKRRAKRR
>TW583 TadA-like protein
MFWATVHIFIRTSHKLHNPSHPCLLKSQFPPLLKVHYMSMSDALGIITKR
VRDRLRTSDHDLSLQPELTDQYVTRELEEYVSRQPIDETEDSIKRKIVAN
LTGFGPLQDIIDDPDVEEFWINSPEEVFLAKNGKSFAVDIKLTDSQLRDI
LERMLQGTGRRIDMANPFVDASLPDGSRLHAVIPDITARHISINVRKFMR
QIRGLDQLVRTRSLTAESSRFLQYCVKSRANFLVSGATQAGKTTMLNSLL
SCCSEDERVVTVEETFELDIPLRDVVSLQCRQATIEGSGEINLRRLVKET
LRMRPDRIVVGEVREAESLDLLIALNSGIPGAATIHANSARDALRKMTIL
PLLSGKNIDSAFIVPTVANCIDIVVHCELGKDGHRRVSEILALSGRVNEG
IIEASPVFTTTNNQLQFTGIYPEQWRGFMNEQGSTVFKNLETDA
>TW720 putative TadA-like protein
MSDSSWGQLSPLISDPTVTDIFVNGDRGVWVDRGCGPVREDKFSFTSQQI
HELIIRLISLGNRHIDEATPCVDVRLHGGVRVHAVLPPVSTIGPLLSVRL
PSLKPITLEDLKNSGFFNGKSMDYSDWLTRQVLERKNILITGAAGTGKTT
LLSALLREVPENERIIVIEDVAEINIVHPHVISLEARQANSEGAGEISLI
TLLKNALRMRPDRLVLGECRGGEIRELFSALNTGHNGGSGTLHANSLLDV
PARLEAMCALADMTASSTARQAFSAIDIIVHLEQSHGARRISAIGCLAIE
DNRLKVNELSCTEL
>TW283 clpP1, ATP-dependent Clp protease proteolytic subunit 1
MSETKQTVFDRLLQERIVWLGEAIDDKLANEICAKILLLNADDPKEDIFL
YINSPGGSITAGMAIYDTMQFVSNDIVTVGIGMAASMGQVLLTSGTQNKR
YIMPNARVLLHQPLAGFGGTASDIQTQAKLILDMKYRLSQITASRTGKTV
EQIMEDGDRDHWFTAEEALEYGFVDHIRTE
>TW284 clpP2, ATP dependent Clp protease proteolytic subunit 2
MYPNSRYILPSLDERTAYGYKQVDPYTKLFEDRIVFLGVQIDDASADDVM
AQLLVLEGQDAERDIIMYINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQ
AASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREI
MRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQALEYGLIDQILVSR
KAGLGKK
>TW303 ffh, signal recognition particle protein
MFETVSGRFLNALSTLRGRGSLVKRDIDVVLSEVYKTLLDSDVSFEIAQA
FVHRVRGRSMSQESLRAINPHKRVTQIVWEELVDLLGHQKTALKFSRTFP
TIIMLVGLQGSGKTSFAGKLAKWLMERGHTAALGACDLQRPAAASQLQAV
AEQAGASVLIPKSGNVLDAVKTVVKTAREKQFSVLIIDTAGRMNADSDMM
DQLSEIDRLAKPHQTLLVVDSATGQEALNITRVFCQHLSVTGVVMSKLDS
DVKAGAALSVSSLRPIIFSCIGEGVDDLEQFNPDSVARRMLGMQGPLEEL
DDVLRLSDKTPDSHSPITLEDFLDSIQKIKNMRHKLLAFFPNSGDLESML
DSSETIRMQAIVRSMTPQERAQPRMLNASRRLRIATGSGTTVNDINRLIQ
KFEHVLKVLSSGNSMKHMTFMNGRFPSFGMRRNNSKTAKSKRRKHR
>TW205 ftsY, putative SRP54-type protein
MREYLECRLSSFDPTLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRG
KKVLLAAADTFRAAAVEQLSIWAQRAGVEIITPPKPRIDPASVAYSSVKK
AIDDNYDVVVIDTAGRLHNKANLMAELERIARVTEKLVSIDEVLLVLDAT
TGQNGLTQARSFLEAVSVTGIVLSKTDSSAKAGFIFQVQESTGVPVKLIG
TGEAIDDIAGFAPYAFVAQIFG
>TW250 lspA, lipoprotein signal peptidase
MTTRTLRFYALVGFLVFLDQVTKYLAHAYLARDFIVIPNLFRLTLAKNSG
AAFSFGTGFSWLFFLLGIIALIFIGWFLPRTTGSIVFLALLQGGIAGNVF
DRLFKPPYFGNGEVVDFLNTPLFSGVVFNIADLFILAGVFGTFLFLKGSK
>TW139 secA, preprotein translocase SecA subunit
MSVKLLERILRAGEGRTLKRLRNIAHTVNAIEDEYKGCTDGELRTFAFDL
KVRHQNGESLDSILPEAFAMVREASSRTLGLRHFDVQIMGGAALHMGYIA
EMFTGEGKTLVATLPAFLNSLSGNGVHIVTVNDYLAGYHSQQMGRVYKVL
GLETGVILADQDPSTRAQQYRADITYGTNNEFGFDYLRDNMAWSCAERVQ
RGHNFVILDEVDSILIDEARTPLIISGSSSGEVSRWFVEFAGIARALTAG
EDYDVDERKHTVGVLEPGIAKVEDLLGISNLYESVNTPLISFLNNSIKAK
ELFKRDRDYVVLDGEVMIVDEHTGRILSGRRYNEGLHQAIEAKEGVEIKA
ENQTLATVTLQNYFRLYKKISGMTGTAVTEASEFMSTYKLPVVSIPTNKP
NIRKDHPDVVYKNEQIKFENLADHVRECYTRGQPVLIGTTSVEKSEYVSK
LLSKRGVRHEVLNAKNHAKEARIVAEAGRLRAVTVATNMAGRGTDIILGG
NPEVLTAVELRRKGLDPSKDPERYEQAWSSAFPKLHRRTREEAEKVIEAG
GLMVIGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLTDDLMRKFNPGA
ASALAARVPDDTAIESKLVSRAIRSAQAQVESLNAETRKNVLKYDDVLNR
QRAAIYTDRSRILEGGDIADRVQAFLSDAIEEIINSHAVTAWDFDALWAD
LKTIYPVGISIEELTDEAGGMGRITPDFVMREILSDAKFAYEKRESEIGP
ESMRDLERKVVLSVIDRCWRDHLYEMEYLKEGIGLRAMAQRDPLVEYQKE
GFDMFEAMMGRIREESIGYLFNIDAQVSSNSPSDARNRPIEHDDNAV
>TW499 secD, protein-export membrane protein SecD
MVVLLLLSLDIWQVFFSGSTFLPKLALDLEGGTQIVLRAKAAEKEITSEQ
LQQAVAIIRNRVDSSGISEAEISVQGSTNISVSIPGTPSQEVYDRIRSSS
KMDMRAVLLTKPIQHAAMNEGSTHAGSTASAAIGDKNATRGSPKSSEHRK
NIPKTPHDTSGMIPSPRPKNGSDMAWITKYWRDRFDSHNCKDNAGDSTPD
NLPLVVCDQYGTTKYLLGPVEVSGTDISRAVADPVSSHFAGASIGWGVTI
TFNAHGGEKFKDVSNRLISLAAPRNQFAAVLDGVVITAPEVRGVTSNPQI
TGNFNQTTATALASQLSFGSLPVSFEVQSSENISATLGSSQLQSGILAGI
LGMILVVVYSLFQYRLLGLLTVSSLICSAIVTYLVITFLSWQNGYRLSLA
GVAGLIVAIGITADSFIVYFERVKDELREGRDIVRAVDRGWSRALRTICA
SDAVNFLAAIVLFLVAVGSVKGFAFTLGLTTLVDLLVVVFFTHPVLQYLS
HSSFFTRKYSGLNVKSAVYRGRLMTRDKSQKTIAERKAGH
>TW498 secF, protein-export membrane protein SecF
MAWFARFSDDLYSGRRSIDFVGRYKIWYSASFVILLVAILGPFFHGGYKF
GIEFTGGSQFVISDVKQKSIELAREVVKKTVDKPSVVTTFGKGLVVRTDQ
LSDTQSNSVRDALADTYGVSHDAVAASYIGPSWGQDVTRQGIQGLVIFLL
LVFVVMALYFRTWRMSLSAIIALFHDLIITAGIYGLLGLEITPAAVIGLL
TILGYSLYDTVVVFDRVRENRALDPTCSDYKGIVNRAVNQTFVRSINTSL
IAVLPVASILFIGSLILGASTLSDISVALFIGMLAGAYSTIVIASPTYAL
LCKKLPSGKEKRLRKAPVKAPG
>TW469 secG, protein-export membrane protein SecG
MCLCFLGFVPVFLTEDVLIVLKLVLLGIVVLTSFALVLLILLHKGRGGGL
SDMFGGGITVSFASSGVAERNLNRLTVMLALLWGVTIITLSVLARFRL
>TW225 secY, preprotein translocase SecY subunit
MFGVVRRMFSTTDLRRKLLFSVFIIVIFRLGSFIPSPYVNFTNVQVCLAA
NSGATGIYELINLFSGGALLQLSVFALGVMPYITSSIIIQLLRVVVPRFE
QLYKQGQEGQAKLIQYTRYLTIGLAVLQSTTLITVARSGALFAASNSPAC
SSLLTDDSWYSTIIIVIVMTAGTGLIMWLGELITERGIGNGMSILIFTSI
AAGFPGVLVGVYQTRGFGMFSTVVITSLVVMVGVVFVEQSQRRVPVQYAK
RVVGRRILGGGSTYLPIKLNMAGVVPVIFASAILRVPSIIAQFSQPAPGQ
PPAAWVVWINENFTTGNSPFYIALYFFMIVGFTYFYVAVTFNPTEIADNM
KNYGGFISGIRPGVPTANYLSYIIKRITLPGSLYLGIVSLIPLIAFALFG
LSADIPLGGTSVLIMVGVGLDTVKQIDAQMQQRHYRGLLTA
>TW309 sipS, signal peptidase I
MNVVLHSSLRSLWEKFRGTLFTLLVVVTIVVIVRTFLFGVYYIPSGSMLN
TLQLGDRIFVSRLHPTLFPLKRGDVVVFRDKNHWIPDDDTSSRSGLLDLI
LGFIEGREPHKLLIKRVIGLPGDRVTCCSEAGRIVVNGRELDETPYLYDA
TPPASSIVFDVVIPEGRLWVMGDNRNNSADSRLHIGLPGGGFVPIADVVG
RALLVFWPFGHWKILHNYHDSTFKGVSRVS
>TW452 tatA, sec-independent protein translocase protein TatA
MGNVFSGWHLLVILLVIVLLFGTSRLPKLSKSVVEALKIFRRSFNEASDI
TRSQDGHPDSQGNFAESASSVPFVKSEKQSEKRASVTEAKKSK
>TW451 tatC, sec-independent protein translocase protein TatC
MTLLGHIAEFRSVLLISGLAILLCSVIGWIFFDQIFAALREPIRTLLSRK
RIATLNFPVLSAAFELRIQVAFTIGVILASPVWLHQLFYFFLPALKRTER
IIAILFVAVNVPLFLFGAFLAWRLFPNIVQIATEFASPEDTLIMDARLYY
AFALKLLLVIGAAFVIPSFLVFLNILRVVSAKAIVKMWRVIILVVIVFSA
AVTPASDVVSMFLLAAPVIFLYGFACLICFGYEKIRDSLS