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Gene list

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COG category: Signal transduction mechanisms
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 21

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# Photobacterium profundum, ss9

>PBPRA2197 hypothetical protein
MDFSVVRQPVFNRQQNKVAYQISFMNKTQFSDKCIPMSVFSDRSDPRKLN
DLLVHAGLNQYSDNKVLIITFEKNTFKNIIDYFFSSRGLVIELSKQEVLD
TELLDLVQKASRNNYFLMMDDRVLYNGFENYLKNISHVKISVTNKKRSLV
ESLINKAKRFNLRIILDDISSYEEFKQYSLCKVDFFKGDVFSKQNLVEVR
TNTLNEGILLNVFQHVMADNYCYKELTSIFESDIKLTHKLISFLNTSLYG
REGNIGSIKQAVCFMGENNMRKFISLLTAQELTQTRTTDIYTKAVSRARF
CELVAINTGKNKTFIDRAFLVGLFSNLPDILGLDIQEALDMLKVNDEIKK
ALLGQECELKKYLESVIAFEQADWQLLYSVTEGNDISPDLVGRLYNQMIR
EVRNNSYLH
>PBPRA2220 hypothetical protein
MVMEKKYLLIDDSSTAISIMRSMLNAAGISNNSIDSTMDSLKAIRLLAAH
TYDIVICDYNMRHHIDGGLIFDEVKQRRLLPSDGVFMCVTGDNTQQVVTH
LIELEPDDYLIKPFSAIVFVNRIEMVLTRKSALYPLLLAVDNKDYQTATD
LCKRYRADHPLYTGYIDRINGDCLLRSERHLEAKVFYENACKHTDHLWPR
IGFGQALKGLGELKRAETVFRDILAKYPKQPLARKHLAGCLIASERVPEA
LEQFHLLHKVNSANPLRELIIANLYAVLQQHKKAAIGYLHFIKKVTGTSR
YSFGVYSNISVSLMLASIYTDDNAEYTELLNEARHNIYEQNIHGDTEQER
YESEISSLVGVAILACLHGEIQDSFIIVSKINLQEKPIDDYYTVLNIARL
YGFCGIPEQYEKTMQIARGLCGKSDDDVLIQSQVKLLEACHVEINQRLKE
GGELVEKAFEKRNSNNAIGALEDAYRAFHMVPFHYHLCFLILELTALATP
SFSKAANIKGVISSCNWVCCNDTRPKKEEIERANELYKLALERVNKLL
>PBPRA2177 hypothetical protein
MIKRILPSSLIGKICIIMVLGLVFELLIALQIFSNERAQMLNLATSNSTL
ERVAALVNVIDRTPVELHDEILAASQSSGLTLSLDNTAVVTGNQRADLSA
QLTQSFSEPLPHQVKIQSVISQHHNEQQAGMSKKMRHMNMSMEHMPMMQQ
RMVEYKTQLIGSVKLSNNYWLNFSSAIDQQALRWSWSAIVGLILVALFTL
SAMYWVVKRSLLPVKKLAVAAQKLGQERDFTPLELSGPEEILPTIAAFNQ
MQTQLSQFVDDRTKMLAAISHDLRTPITSMRLRLEFIEHNEDQKQLLKTL
TNMELMIEATMNFARDDAQQEPSQTVELTSLLQTITDDYQDRGDVIHFIA
ANKIICRLSPIAFRRVIENLLNNSLCYGQQLENTSRPSPIELNCFNDEQH
TVVQVCDSGTGIDESALEDVFKPFVRLEKARDTSSSSVGLGLSISRSIIQ
AHGGSLVLRNRSEGGLCAEIRLPQYHRPQSK
>PBPRA2210 hypothetical protein
MRHMADDSYEVMSAGMSPETVDERVYTVLTKYDVNSDNLQSISVEALHDQ
HFDVVITLCDKASNECGLFPESDALIHWDFKDPKPLEGDQGFVDTYEGLK
ARIALFLMLNGEDQSDAVGPVELFKIMGDPLRLRILMLIEDEFALSVGDL
TKALSVSQPKVSRHLALLRDAGILKDQREGLWVFYRLPENLPVWIHHILT
TVRNGNPGLINNEKLKLSQIKDRKKPGFSKKK
>PBPRA2303 hypothetical hemolysin secretion protein HylB
MLANRFTLQSRLIFAVLLPCIALLFVGSSGLKSMLDIRNQAEHLYLNTSS
PMHSMGNVTSRIPRMRVGIDMMLLQETSLRDSKGIITRAREAREEDIPEM
RQSIQNAVDSQVNVKRRKEIEELQIEFEKIVENELNPMLTAFENNDIVTA
KQIYHERYTKSYGEMRKKAQSIMNSMLEQAREQNEVSQKSYSSGQLDMFV
IIGFSLIISFIFSYFIVISLKRRVSYLQTTIATAANDMALNVRIELSGKD
EITAIGNSFNLFIDKVHTSIEEVAASSRELTDTARKISDDAKITQSNCTS
QRDRTVQVATAIHELGATVHEIAGNAAKASEVAIQATHQAKVGGDNVGTA
REQIIDLTDELEQATDVVGSLANQIGDISSILETIRSISDQTNLLALNAA
IEAARAGEQGRGFAVVADEVRSLASRSAGSTDEIQNLIERLKSESSRAVD
AMSKGKEKSLLVVEQADNTNDSLLQIGNHIGLISDQNIQVATATEEQSSV
VTEINRNVEDINQLTIETADVAEQLANSSEHLHSLSNQLDKLVNSFKL
>PBPRA2209 PP1926, hypothetical phosphatase
MSKTHPFWALSLDTTLGSQGAQLLLMPCPGKKEANLHDSLVQLKEAGVTA
VLTALQESDLPDGGLELLTQECKTLGLKWFHLPIEDDCAPGEAFDANWDA
ANTAAQAMLDNGESLAIHCMGGSGRTGLIAARLMLARGFELEPTIAQIQA
LRPGAFTRQPHIDYIQQFAK
>PBPRA2185 R01478, putative amino acid ABC transporter, periplasmic amino acid-binding protein
MTKKPSVLLAAIATTSALFAVNASAANTTLEKVMKQGYVQCGVSAGLPGF
SNPNSKGEWEGLDVEFCQAIAAATVGDKTKVKYIPLTAKERFTALQSGEI
DVLSRNTTWTLHRDSALGLNFAGVSYYDGQGFMVKKELGVSSAKELDGAA
VCVQSGTTTELNLADYFRVNGMKYSPVVFDTAPQTSKGFDSGRCDVLTTD
QSGLYALRLNLADPASAVVLPEVISKEPLGPVVRQGDDQWFNIVKWTLSA
MLNAEEYGVTSANVDKMKESKDPNIRRLIGLDGPKGKGLGLNDDWGYQIV
KQVGNYGESFERTVGTGSPLKIERGLNALWKDGGIQYAAPIR
>PBPRA2325 SFPB, hypothetical protein B
MGSQTLRRPFHVLDKSEYPVTSELSGSIGLGSREQLLEDLTALDEQRSKL
ALKHGKYLLTDMMERANQQGLPNVIKQQRHGDFVESLLDIEAETRLLVIG
KSGETHQNQTTAIGSQLESVIRSIKAHTLVAIKPFNEPKSFMIAFDGSDI
SLKLIDKAIKTPLLNGLTCHLVMVKDDDDRTESFHVAAKKLRAANIDVLE
KIIEGDIHSALVHYQTHNDIGLIVMGAYGHSRVRQFFLGSNTTEMLTKSQ
VPLLLIR
>PBPRA2178 SMB20219, hypothetical DNA-binding response regulator OmpR
MWIFMDSSALPSLPHLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEME
QCLRDNSIDLIVLDLMLPGKDGLTLCRELRVHSNIPVIMLTAMGEEVDKI
IGLEMGADDYLPKPFNPRELLARVKAVIRRFNAIPEGKSVRQSKVDSVEE
AQDKESYVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKVFVEHPRK
VLSREQLLDLAKGRETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGG
GYQLVCEVTHD
>PBPRA2300 STY0674, putative sensor kinase citA
MPLYIMSHITNQNVSFRQRIWILLVSVIVLQIIMIGGVFHFSLSNTLNHQ
ISTRAVIQAREIASDPQLIKAVMGRDTKDLKKQIDRLQRLSDADFIVAGD
SNGLRLAHPNGAKVGYPMQGGDNARALKEGKHYFSTRKGSLGFAIRGKSP
IFSPSGKIIGVISVGYLLDKVGDWLLIYSYPFFFALLLMLMISSIGAWFF
TWHMKKQMYGMEPEEIALSHRVQKSVFEAVYEGIVAVDHNGQILAVNKRA
LSILGISHFPEHLDGRIINKFATPAFFFMGVDENGKSDDVERKNDLITCN
GETLIATRVRIWEGKIHAGWVISFRPRNDLNILTSQLTQIRIETDSMRVL
SHEYANKLSTISGLIQIGAHEEALQTIRSETETHQKLIDFISQTFHSKVI
AGLLLGKYSRAKELGLNLIFDPCCQLEKKPTNLSVDELAAIVGNLLDNAY
EATIKNPNSNKTILILLTDASNELVIEVADNGTGISDNIADSLFTKGVSS
KEQPGHGVGLYLVHNFVTRAGGTILVDEAEPQGTIFSLFIPNKSLADGNF
>PBPRA2301 STY0675, putative transcriptional regulator CitB
MLIVEDEPNIAEFHSYYLKQTRRFRPIGIAGNLAEARKMVQILKPKLIFI
DNYLPDGKGIDLLKEVTSSKGAADVIFITAASDMDTVREVVRCGVFDYLL
KPISYDRLKDSLDRYLKYTSSLLASDNANQRHVDELFNFQSKNKQLEQFP
KGIDELTLEKVKIAFEESDAIFTAESLGKVIGTSKTTARRYLEFSTANGF
LDAIIQHGKVGRPERVYRKK
>PBPRA2346 UHPB, putative UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific
MRNYGITSLCGWLLISCSWFCLWVLSYYFIMEPELAILLFPFALRLGTVL
HTPKRYWLAVYGAEWWLMVSLAILLDQPQWLSVIAASLISVPIIWFAQKY
YYGSQWRRLCVMGVVIFSTALLNVLVFSSQIPSLQMPSLQILSLQMQGVQ
DAALITAPLYSLWMVFLVSVTGGLMLVPSCYLIWSYLFQKSWIPLTVNLV
SKPIELRSRHVVIYVVLFALSIAAQVGLPEELRRFAPFCLAIPIILLAFR
YGWQGALLGTLLNSVALIAARSGVSNMEITDLLLSLSAQSLTGILLGMGI
QRQRELNQKLRHELNRNHNLSRQLVKAEESVRRDIARELHDEIGQNITAI
RTQASILKRVENTPMGESCASTIESLSLNIYDTTKGLLTQLRPKTLDDLG
LEEAIHQLVRELECEANGISTTIIWNEPTDVDLDLSDATSVTLYRICQEA
LNNMVKYAQATEAKITITFENDIYLTVKDNGVGFKPEEALRGFGLRGMKE
RVQALGGEFTLSSDSGTQKPGTALHVVLPKL
>PBPRA2167 VP1985, conserved hypothetical protein
MQHVLPKGLKHLHDYGLNTRINPLTAVSGHTDKSLIFIKRTISQLLPFSF
YSNFLVNYWAVLYHSHHGFIILHTLSQLKSGELAGTQRLKLSENLTSFPL
EILSLADSLEILDLSNNQLTSLPQELVQLKKLKIIFASNNQFEVLPEVLG
QLPHLEMVGFKANKIHSVPEHSLPAQLRWLILTDNQIKTLPNSLGERPRL
QKLALAGNGLTHLPQSMSQLDNLELVRISANQLTECPEQLLSLPKLAWFA
FAGNPFSQTKSAIQSVPVLPSSSFSLQDVLGQGASGVISKATWNNKYQTD
FPEDIAVKVFKGEVTSDGYPDDELQACLKVGNHPNVVQSLAQVNEDGYLA
LIMNLIPSHFRNLGLPPCFNSCTRDTFSPDFTLSVEHIDKIVKQMEEVFV
HLHSNQVCHGDLYAHNTLYDEEANIIFGDFGAASMYHMLTEAQQACIKQI
EHRALCHFIDDLLSVCAEGNRDEKTFDLLKQKLSH
>PBPRA2131 VV11743, hypothetical transcription regulator
MIWVSCNHHNKHIEAKENLKHFHNVVDVSPFELLSTMTGHELIFLEVKNS
SSEGFELLRAVKQRHAATKVVIVYHELDADLALNVLRAGGDDVISVNSNR
QQLDECFTRLHTHTVNVESGAYEQRELSIKPALIIIDQNISAPLREEDLA
NACQYSPTYFSRLFHNVMGVTLKQYIIKKRLDLACGLLISDREKISSVAT
SAGFKDVSYFSRVFKKHIGCSPGEFRLKKHDVN
>PBPRA2404 VV12066, hypothetical methyl-accepting chemotaxis protein
MKSKKQTSVIQRIYAGFALMVALLIATIVLMLDGTSRIHQQLESVTTNAL
PLVSTTNQTSVSLLAADKIFKDYLTTQDPTRMQTYETNFTQAQDAFVQAR
EQLAKVAKGNPTLNAYLGDLSALEDRYFNEAHSAMNNYRVQLLAQEERQQ
STRRFQQLHTELNVRMKEYIADQDNLSVKMIAMSYFNQLAKTETITSDAL
ATEDIAKIEKALKNNRKFVNHLGQSYRALTSQLPEVKRIFDKTVAQYKLD
IGQKGGVLDQHYEYIEARNRLYDNIAVLAAEIDQAMVLLDNFRTLANSQM
DSAIESANNTYSQGYTNSILIGICVSLLAIFIGWYLAGCVRKPLVSTLKT
LEALTNGDMTQRISGNTFIEFDKLSHHINTLADNLQEILRKLSQASEGLT
KVAAENQTTTTKAKHRLNEQRQQTASVATAMTEMEQSVADVSLSAQQSME
RVHAVEKASEVGRDVMSKNIHTAHQLSDRLDESVLAVSKLQEMSSNIGSI
LDVIRNIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRVLAKRTTDST
SEIEKMIQSLQSSSGQAVSVMQTCVTEMTSSITQASDANGAMEEIQSLIM
EISQMSAQIAQASEEQQCTTGSIARSLEDISHIADANFSSMEEVAEASSK
LDELANQQNTLVHRFKL
>PBPRA2343 VV2111, conserved hypothetical protein
MRISHKRKVQLKLQKRIKATVAVAKPTAEKVVVKKAPTAETVKAAAPAPK
VVEEQKPVEATAPAAAQVSLTPKQQQVLDIVVSNPEGLNPKGIGLQAGQE
DAKAASWATGALKKLAEEGLVERIQLAGNKVLYKAA
>PBPRA2145 VV21195, hypothetical methyl-accepting chemotaxis protein
MNKLNLKSKLLLLSLLPVFIIMSVAIGIVLNLESKALDEQVEHFNNKLIS
ERKSQLKDAVNINKHAVENILAANSDKKLAIQQIRKLLLPLRFAINNTGY
IFIYDKNGNNIVHAASPEKQDKNHRGMTDPNGVKILEKLYQAAQQGGGFV
DYVHPKDGNPTPQPKLSYAASIKNTDWFIGTGVYIDDINNEVSEYQLAAQ
NEMNERFNIVLLTSGILSLLTIFTIIFTANRIIRPVQNMVETLNDIADGE
GDLTRRLDINGHDEIAQLGNAFNRFATKLQNIIRQVSTVTDQVSGAASNI
HNQTASLTRQLQEHNNETEQVVTAVTEMSSAASEVAMNANEVSSATSDAS
QDSIVAQQRVDTSVISISALVEEVDQAAQHIHSLNQQSQKIDNVLKVIGE
IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRGLASRTQSSTKEIKEM
LDELHRLVSQAVTSMDHSQSTCTEAVDAANLITDSLSSVTGAVESINDMT
SQIATAATEQSSVTDEINRNMVSIQDIVTDLIHSSSDSEKIVNELNQAGS
ELKSLVGQFKV
>PBPRA2122 VV3248, putative cyclohexadienyl dehydratase precursor signal peptide protein
MLVAIPALMLSQQVDAASSRLQQIIDRGVLKVGTTGDWNPMTIRDPATNF
YKGYDIDITTELAKDLGVTVEYVAAEWKNLVNGVVTDKYDMTGSASLNMH
RARVAGYSQPYFYLAFVPVIQKKNMTRFNKWNDFNNVSVTVASSLGTVQE
SMVKEFFPKAKHNMIDSEVRDYQELLANRATVIVTSNVEAATITRKFSQL
KIADVKGMRRPTPIAMLLPRDDQVWINYINHWVELKKTQGFFERIAKKWG
LVHLER
>PBPRA2193 VVA0728, hypothetical methyl-accepting chemotaxis protein
MKEVAFRWIDKYLIHLKIQEKFYLLFLLPLIAIISVSAILVDAANEQRIE
ITTNQLNTATALLSKYNVNQSDAVSLLANSGLKLGNGEISSTVSNMNYVI
SAIDPSSIYSYLSTTQISFTILLLVVVLACVYFIMTFIGGAMFTMNRALA
NLADGDLTQRMNFFQVRDEFSTIAITIDRVADREQKLVQATQEATAMMQQ
ISSDLRQRSHQSENLSASQQQHLDSLASATEEMATSIREVATHAHQTSDQ
TREAQEMSELGRTQVGETKSAISTLSSEINLAASAVSELDNNATKINDVV
TTINGISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQSATV
EIQQMIESLQQNSQQLMSVMNNTVKNAQQSEQLMDSVDNEISQITERNQQ
ISDRSTEIAAAAEQQGAVADNIASSVEQVREQSRQVCDVISQSSTEIDRL
NQQAEVLESLMRGLKA
>PBPRA2238 Y2443, putative transcriptional regulator, LuxR family
MINVFLVDDHELVRTGIRRLLEDVRGIKVLGEADSGEEAVKWCRAQHADI
VLMDMNMPGIGGLEATRKILRFNPDIKIIVLTIHTENPFPTKVMQAGAAG
YLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMALSQFAPDSENPFKDLS
ERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDIGGDVELT
HLAIRHGMLDTETL
>PBPRA2347 YPO1576, putative response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family)
MFCCIFSTLLAMKDGCSLASFLHFLGYLQMIKVALVDDHIIVRSGFAQLL
SLESDINVVGEFGSALEARKGLPGSDADVCILDISMPDESGLSLLADLPS
GISCIMLSVHDSAAIVEKALESGARGYLTKRCSPDELVQAVRTVASGGCY
LTPDLTMKLVTPNRSRQPIEQLTKRERQIGEMLALGLDVKAVAVRLGLSH
KTVHVHRANAMDKLNVKNNVELAKCFESETV