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# Pseudomonas fluorescens Pf-5, Pf-5

>PFL_5274 sigma-54 dependent DNA-binding response regulator
MPHILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIV
SDLRLPGAPGTELIKLGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPF
DHDEMLQAVARILRDRQSAENAPPDRPAAKAGATAERAGAGNNNGEIGII
GSCAPMQDLYSKIRKVAPTDSNVLIQGESGTGKELVARALHNLSKRAKAP
MISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEI
GELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLSKIG
QFREDLYYRLHVIALKLPALRERGADVNEIANAFLARQSARVGRTDLKFA
ADAEQAIRHYSWPGNVRELENAVERAVILCESPEISADLLGIDIELSDLE
DDDFVGLPPQAGNTSHEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGV
SRKCLWERRQRLGIPRRKSGVASES
>PFL_5213 methyl-accepting chemotaxis transducer/sensory box protein
MFNKRLKQELSTLREELSSLQQVKESLESEMLVINLSADGRIQSVNHNFA
QEMLYKTGDLVGRALEDIVPEHVKHDEFHLRFKATLTRGEHFAGAVRLLR
GNGQEAWLRSISQPVRDSEGRIKYFAIFSSDLTRTIEASREHENLIGALM
RSTALIEFDLNGNVLTANDRFLSSMGYSLAQIQGKHHRIFCEPEEYNSQA
YQAFWKRLNAGEFIAERFKRIDAHGRVVWLEASYNPVMDANNKLYKVVKF
ATVITDQVNQELAVAEAASIAYNTSLQTDNSAQRGTTVVTEAVNVMRDLA
KHMQEAGEGIGALNEQSLVIGSIVKTISGIAEQTNLLALNAAIEAARAGE
QGRGFAVVADEVRQLASRTSKATEEIVGVVRQNQDMAREAVELMAEGKLQ
AEQGLALAAEAGTVIVEIQDGAQKVVSAVGQFANQLSS
>PFL_2203 sensory box histidine kinase/response regulator
MACTSTRPSPGSPLPVVELRPAAELQAQLDCLQRENRKLRRINSALIERV
ESGITRGNDPYAAFQHSVVLAEQVRERTDALNQAMAELKAGNHLLSEARL
RAETAHQHLIDAIESISDAFVLFDQEQRIVLFNSRFRAFWSHSRVRIMAG
MRLSEVRRLLTSTGLFSEEPRSGGDEQLLYRLHNGRWLQVSERPTREGGR
VILFTDITEVKHSETLRREQAVAQKSHLLQRAVDNLSQGVAMVSAEGVLE
LWNRRFLELSGLAPVAAHRLFAEVIGDSELRLLSPDSRDANGRPIHECEQ
RLSDGRVLEIRTHPLPTGGFVNTFTDITERYQHAEALSESERWIRLITDH
VPALIAYLNADLVYEFTNKVYEEWYCWPRGVMLGQSLREVHSEQHYQRLE
SYVERALAGESVTFEFAETNINNQERYMLRSYVPNRLANGEVVGIFVLIR
DITERRRTAEALHQAYQNLELRVRERTAELTTLNQQLLREIEERSRVESR
LREAKAEAERANLSKTKFLAAVSHDLLQPLNAARLFTSALLERRDPQASS
ALVRNVSNSLEDVENLLGTLVDISKLDAGVIKADIAPFALSELLENLAAE
YAQVARSEGLELHFVACSALVRSDIQLLARILRNLLSNAIRYTRQGRVVL
GCRRQGRWLSIQVWDSGMGIAAERLEEIFQEFKRGEEQRPDQDRGLGLGL
AIVEKIAGILGHRIGVRSWPGRGSVFSVQVPISASAPLPAPRPELGDALL
ERLQGARIWVLDNDAAICAGMRTLLEGWGCQVITALSEEDLARQVDDYRA
EADLLIADYHLDQQQNGIDAVARINARRALAIPAMMITANYSNELKQQLR
ELGHTLMHKPVRPMKLKTAISHLLSPATPTPHH
>PFL_2863 signaling repeat/GGDEF domain/EAL domain protein
MLIGSYSSALVLISIFVAILASYTALDLTGRIATTTGRAAYLWMMGGALA
MGVGVWSMHFIGMLAFSLPIDLGYDIQLTALSLLISILSCGFALWLVSQP
RLPLWQLLFGALIMGSGISGMHYTGMAAMRMQPGIDYDPSLFGASLLIAF
GASLAALWIAFRLRQNTPYVRLARTGAAIVMGFAIVGMHYTGMAAARFAD
GSFCGALGNGLSGKGLDNLVLITTLAVLIIALLTSVLDARLEARTAVLAQ
SLTEANKELTQLALHDTLTGLPNRILLADRIDQAMHRVTAHGGCFALMFI
DLDGFKPVNDAFGHHMGDQLLREVAQRLREDLRSEDTLARIGGDEFVLLV
QLAEPDDALRLAARQVGLVSRSFRVAEHDLQISASIGIAVYPGNGLSAQE
LLMNADAAMYHAKGTGKNGYSFFDASMNSNARRQLQLLQDLRNALEHHQF
RLHYQPKFDAANGLPVGAEALLRWEHPQHGLLLPDKFIELAEKTGLIIAI
GEWVLNEACRQMREWYVQGYTDWRIAVNLSALQFCHAGLVRSVANALERY
HLPANNLTLEITETTAMSDADVSMLVLQQLADMGVDLSIDDFGTGYSSLM
YLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVE
TGVQQTFLTQLGCDSLQGYFLGHPLPPEGFMQGIHRGEEKA
>PFL_1752 sensor histidine kinase
MRGRFDTLFGRLFGVLLIAIVLAHLLAFFWFHHYGPPPPPPPPDSAQLIN
GQPPPPYPRRPPRPWFGGPLVPLTFQFISLIIAAWYGAKLLSRPIQRLSA
AAERLSENLDSPPLEEVGPREARQAASTFNQMQKRIREQVQQRGRMLGAV
SHDLRTPLSRLKLRLEQIEDSKLQGQMRQDLDDMIKMLDATLSYLHEQRT
SEAEQWMDVQALVESLCENAQDQGADAQAQGHCAPLLVQPMALQSCLNNL
LDNALRYAGQATLALEDDRGQLLIRVIDHGPGIAADKREAVFEPFFRLEG
SRNRNSGGVGLGMTIAREAAERLGGQLILEETPGGGLTAVLRLPRP
>PFL_4887 sensor histidine kinase
MLAFWLVSVIPTMIAAELAATTLSEIFDSNVRIWLQESTKIVEDEITEIL
HDNARIAQLFLRYTRPPTDRNAAKHDKLTADIADSMGIDVVALIRKNDHK
VVFTTAADDVVGQISTASNAVLQTIQVGGVATGAVVSTFQTQLDGVDYQL
LIATYLDASFLTSVADVHSLDLRLYLAKADDFSEIFATQRFEDHPPQVPH
KIEDILRATRQPTEQFTSRYSGLYRPIFNDSGDLVGVIFSGLLRHSSLVG
LVNQSNLFILIFLLSSAASLCVGWLVSQRLTRPLRGLSKGVQAVIAGDYR
QRVPVIGGDELAELSSTFNHMTERLGELQHLEAQLRRRDRLHALGEVAMG
LAHEIRNPLGIIKTATQLLHRRANLPENDKRHLEYVISEVSRINDLITEF
LDFAKPSAPIRATQLARPLVEELLGFCTPELATHNIDARIDDQAPGATLH
ADARQLKQACLNLILNAIDAMPDGGRLTLGISQRDDETIISVSDTGQGIE
PDMLERIFTPFVTTKASGTGLGLAKVFSIMESHDGHIECTSEKDAGATFS
LYIPANGEEDDEDSDDA
>PFL_4800 GGDEF domain protein
MTHKAIQSLLFKRFAIAAGTYALILLLFWLAVVTGHSRASSGSALLGTGL
VLASQGLLCWVFVSGRNLQFADPSLTEVQVVLGIAWQTWLMAHLDQARGV
FLVFYLLPLLFGLFHLSRRAYLRSAALIFFCFAAVNLWDGYRLLLGDPQL
AALQVCVLLVMLVWMCLYAAYVQASRSRMRQRRFALQAHQDTLRGMMRQL
EDLVATDELTGLFNRRHFLRIASRELQAMDQEQVHGLALIDLDHFKRIND
LHGHAAGDQVLQAFAAVATACLRDGDVLARYGGEEFVVLLPECDAERLTS
CCERLRLAFTEVQLVGLNVRDLSLSAGMTLLRAGDDLDHALQRADQALYR
AKRDGRNRCSAAWENLDA
>PFL_6030 GGDEF domain protein
MVLISAPSWESVSRLFEDDRNAVLLTLPHLQPGPGRCSLPTVLLLDQEPP
VAPVGVSDWLVSSCLSTDALRRCLRHVRERGLLENTLQRLAEQDPLTGIA
NRQGFQTLLAARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQV
VSRLKSQLEAGDQLARLGSDEFALLIDTRRAPQRAEWMAERITEAMAEPY
WVDGESLLIGCSLGIAHARANAGADPLMWHAHIAMQQAKSTQGCTFHIFN
ERINRNARSLADLESELRRALRRDELELHYQPRLNLHDGKIVGLEALVRW
RHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLPPLH
MAVNLSFRQFQDSQLLSTLSRLIAERGVEAQWLEFELTETAVMRRSDLVK
QTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDKSFVGGMEQRE
ENRKLVHAMINLAHNLNLNVVAEGVETAEQLALLRGFGCDQAQGYLISKP
LPLAELMDYLTFGSSQQALQEGTV
>PFL_3328 response regulator/sensor histidine kinase
MMDQLNNRRILLIDDTPSIHEDFRKILTPPEADDNGLDDLEAQLFGATAK
PRQQPFELDSAYGGEEGLAMVCQAQERQRPYALAFVDMRMPQGWDGAQTI
ERLWQQDPRLQVVVCTAYSDYSWEELLERLQGHHRLLILKKPFDNIEVQQ
MANTLTSKWEMTARALLQMHHLEHLVQQRTEDLRQAGAALQLEIDERKQL
ENQLVQSEKLASLGQLAAGVAHEINNPIGFVSSNLGSLAGYLQQLDQMLS
AYRQAEEAIAAPELRKHLQSLRESIDLDFLQQDIPVLIRESKEGIGRVAQ
IVKDLKNFSRVDSDQQWQLASLQQGIDSTLNIVANELKYKADLVTDYQPL
PEIECLPSQLNQVVMNLVVNAAQAIGPERGTITLRNGVDGERVWLEVSDS
GCGIDQEHLAKIFDPFFTTKPVGQGTGLGLSLSYGIVKKHGGQISVQSQP
GVGSTFRVELPIRQARQELPAQP
>PFL_4326 bolA protein
MTMQQRIEAALGALQPEHLQVLDESHMHSRGLETHFKAVLVSEQFAGLNS
VKRHQKVYATLGELMGQFHALALHTYTPEEWSKIGVAPASPTCAGGSQH
>PFL_5112 sensor histidine kinase
MRNGLSLKWVISGSFLLLIAVVLLIYSLLLPEYSVRGLLYTASAMMEEEA
QYFARHYNKDPTTPPPHNYFYTSVIGKEALPEKVRQLLDTPPSLSFGAVQ
VFGDLDSDDDDEGRAILAQPLADGKTLYMYDVDHDQEEGGEVETPLSDAY
LDRELHGVIFISLAVFIPALIIIALLVWWLVRPLGRLSQWSSTLKDPDTV
AGERPNFSFKEFNMLADALAQSMQQVQAASLREGRLLRYTSHELRTPLAV
LKANIELLTLQSGGSLPPPLQRIERSVLNMQRIAETLLWMSRELPEALPE
EPIDMSGLVNELIQEQRYLIGTRDIELTLDISTTPCRLPLTACRIVVGNF
LRNALQYADDGTIEIHFDYPRLRILNRIREAKQIEPSSDYGYGLGLELMR
QLCARLGWRIDVLVEEQRFSVTLDFDATPTEEAPPADPGEESA
>PFL_0277 osmolarity sensor protein EnvZ, putative
MKTPLWFPQSFFSRTLWLVLIVVLFSKALTLVYLLMNEDVLVDRQYSHGV
ALTLRAYWAADESNRDQIAEAAGLIKVVGSGVPAGEQHWPYSEIYQRQMQ
AELGADTEVRLRMHAPPALWVRAPSLGDGWLKVPLYPHPLRGQKIWSVLG
WFLAIGLLSTASAWIFVSQLNQPLKRLVYAARQLGQGRSVRLPISDTPSE
MTEVYRAFNQMAEDVEQAGRERELMLAGVSHDLRTPLTRLRLSLELMGDH
TDLTDDMVRDIEDMDAILDQFLAFIRDGRDESVEEVDLGDLVQEVAAPYN
QNEERVHLRLEPIQPFPLRRVSMKRLLNNLIGNALNHAGTEVEVAAYVSG
DTNAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRARGGKGTGLGLAIVK
RIAAMHGGNVELRNRPDGGLEARVRLPLGLLLPRDAD
>PFL_2164 DNA-binding response regulator, LuxR family
MTSVAQQLVYVVDDDPGMLDSTVWLLESVGLKALPFTSGREFLEHCDPSL
NACVLLDVRMPGMGGLNVQEELRQRDIRLPLIFVSGHADVPIVVRAFKAG
AVDFIEKPYNEQLLLDSVQQALSRADNHQNQSAGQARVQALLESLTPREK
DVLLPLVQGYTNREIAEQLGVSIKTIDLYRSRVMKRMQAEHLPELVGMAI
AAGLVDPLHLR
>PFL_5111 DNA-binding response regulator ColR, putative
MHIHLLLVEDNLDLANTVIEYLEIGGIVCDHASNGQTGLNLALSQHYDVI
LLDIMLPRLDGQQLCEQLRQNGSQTPILMLTSLDALSDKLASFAAGADDY
LVKPFELAELVARIRALSLRRSGQASRLQVADLVMELTTRKVSRAGQELH
LSPICWTLLECLMRASPEPVTRERLEATIWGDEPPDSNTLKVHMHRLRKT
VDKSFDQPLIHTLPGIGIQLRSHA
>PFL_4647 histidine kinase domain protein
MAFIRSAIRYTTTLSMIALLGLAAGCSKPADAPKPGTAASAQATGATAFR
LGDLAEFQAIARDVAGLVDKQDMLQVSDSGPGIAVAERERVFDPFHRGLG
SDEVGSGLGLAIVKAIADRHAGRVWLDYSDQRAKRGLCVTVAFARVQVPP
AG
>PFL_3247 response regulator
MSEDAQDVVLIVEDEPVILMLLADYLSGLGYRVLQAENGEQAFEILASKP
HLDVMITDYRLPGGITGVMIAEPAVKLRPDLKVIFISGYPNEILECGSPI
TRKAPILAKPFDLNSLQEQIQQLLA
>PFL_3853 sensor histidine kinase
MNSVRTRILLPVLVLVLLGDLLISWLVLRDSHHEIEEVYDAQLAQSARLL
QGVLRQRDPAQKPDAADWERLHQAFDQAMSRVGVAGAAHPYETRLTFQVW
RDDGQLLMRSAEAPLLEAPPTTLGAHDILENGKDWCAFLLADPQQGLLIW
VGERDDIRQDLIQRIVRHTLWPTLIGVPLLALLIWLTIGWGLAPLRAMAR
AIRGRSSDTLQPLGLKPLPQDLEPMQTALNQLLAQIDSLLERERRFIADA
AHELRTPLAILRIHAQNAQSASSPEQRREALDFLVSGVDRATRIGSQLLT
MARIEPQLNSPRLSRIDLSALVREELAELTPLALEKDVELVLEGDEGCLI
ATDPVALAIALQNLVTNALNFAPAGSEVRVGLRPQADGAMHLCVEDAGPG
IDEQQRERLLERFYSQGNANGAGLGLAIVQMIVSKIGGRLELRNRPEGGL
CALLLLRPAL
>PFL_5433 PhoH family protein
MNAPIEPHRFILEPFEARRFANLCGQFDEHLRLIEQRLTIEIRNRGNQFE
LIGEPKQTTSAENLLRRLYRETKGTELSPDLVHLFLQESAVQELDNPSVA
DAAVALRTKKGMIRPRGLNQQRYVKEILGNDINFGIGPAGTGKTYLAVAC
AVDALEREQVRRILLVRPAVEAGEKLGFLPGDLAQKIDPYLRPLYDALYE
MLGFEHVAKLIERQVIEIAPLAYMRGRTLNNSFIILDESQNTTVEQMKMF
LTRIGFGSTAVITGDITQVDLPKGTKSGLAHVINVLKDVPGISFTHFMPK
DVVRHPLVQRIVEAYERFELHAADEAAKAAADRGNRHDA
>PFL_0490 methyl-accepting chemotaxis protein
MFNAIDRYVPDPASAIKRSPEVMSMSLRSLNIAPRAFLGFALIGCLMLFL
GVFALNQMGKIRSATERMSQDTIPSIKSVDEFTQLSLRQRVQAYRLLLNR
EPQAQQQTLDAIDQRNQKIEEARAQYLKLISSPEERLAYEQYGTLLSHHR
QLESQLIELSHNNQLEAMQQLLNTDLMDSAEKINAVLNQLVEINSHYATV
ADDDAAAQYRRAFNLVVGLLVLASALTLLFAWRLIRSITQPIANALRAAE
EIAEGNLTRPITVDGSDEAGRLLQAMVTMQEKLRDTLQSISGSAHQLASA
AEELNSVTEEGARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEAS
KSATTSAGDGRDLVRETVSAIERMSSDVQGTASLIGDLANESRDIGKVLD
VIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSE
IERMIGSIQSGTEHAVDSMRNSTERAESTLSIARGAGQSLDTINSAISEI
NERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSTTGANQTQAASSELS
RLAVDLNNLVTRFKL
>PFL_3327 sensor histidine kinase, putative
MKLSRRVPIMLLSLLTLSLVLGLAFLYFKTVIGQPSNYVLARDLISHIKQ
LNAQWETEVLKARIAITHDYDPLVMPVQEINQLWNRFDQLSQQNHNDPAA
WTAGHQAFIEAFQEKAGLVERFKTHNAVLRNSLAFLPTAEDDIQRRLAGL
DDQARLSEQTIAIDTYDLLLSSLEFAQVSSDDRAADILVGLNKLAVNKER
LPEPMHEPVEILSNHVSVILREQPVVNDLLERITSIPIAQRLDDITHLLN
ADQSQADLQDQKAHQYLLLFAALLVILILYLAVRLVRSYAVIRRVNTALQ
SANEHLEHRVEERTRELKEAQSELLDSARQAGMAEIATNVLHNVGNVLNS
VNICSEMLSRTLRSSKAQGLGKAMQLINQHQDDLGRFFTEDDKGKLLPGY
LNQLVEAIATEQQGMGEELAQLARSVDHIKEIVATQQSYAGASRLIEPLR
VAELIEDALRMNSGALARHQVTVVKDYGPLPPVMGDKHRMLLILINLISN
AKYAMSNLDDHSRTLTLSARVLDGQTLSISVKDEGEGIPAENLTRIFSHG
FTTRKDGHGFGLHSCALAAMEMGGQLNVHSDGPGLGATFTLDIPLISAED
P
>PFL_0301 sensor histidine kinase
MTPPLPRRPRWRSLALLALCLAPLLWPLEHLAERYYRNELTSQNRQTLDL
YVANLLGTLHRYEVLPQILGDLPALRAVLGAPDDGVTQGNANRLLKNISA
QTGAEVMYLMDTSGKTLAASNWDKHDSFVGRNFAFRPYFSEAMAGRLGRF
FGLGTTSAKRGYFFAAAVRDGERILGVLVVKVDLDHTESLWGKTPEQLLM
TDHNGVVILTSRPEWRFRATRPLSDEERQAIVAIQPYPTRDPRPLNLNPN
AWLTQTQQIDETRWAVSILAPRTLIDRPVRTVVAVGAAALLVLMLLLGLM
MQRRRHYLERIAFEAKARRELEMRVAERTSDLESLNRRLKQEVLERETAQ
QELVRAQDNLVQAGKLSALGTMSASISHELNQPLAAIRSYAENAEVLLDH
QRTDDARGNLKLISELTGRMASIIAHLRAFARRDHHAPESVALQPALDDA
LALLAKRRRAMEVELIRDLPAATLWVEAGETRLRQVLGNLLANALDALTE
KGPPRKLWLSAESTATGVNLYIRDNGPGFCMEALGRAGEPFYTTKTRTQG
LGLGLAICDTLMRAFGGELSFANHREGGALITLRLRAGAPGVSLQPSEDR
GV
>PFL_0187 response regulator
MTAVDLPAVPRVLIAEADPWSRDLLKQVLLNVRCDARLDLCADGQEAMDL
LSAKPYDLIIADWELPGIDGLSLLRAVRQRKRNPVQPFILLSVRSDSASV
REALPLAPTAYLTKPLNMEGLTQRLQGLLLDAGQEVSCEVPALAPGMTLW
PFLERRRDVADGAPLLTDVQLAVKRSLNPEGLDLKVLEEEIRTDPQVTAV
LIAAANSAAQHHGDGVQTLSQALHRLGTGQSMNLILGLTLKRSARLSDPA
LADYAERYWELSLHTAEYGRTLARLLDLDQERCYCAGLLHRLGDLALLRC
LQEWKQAGGELDDQEEIGDALERFGAAYGSALRTRWRMPLELRELIASIY
QLGGGVYSREALVMNLAAQLARLTEHEGVEEIARCKTARLLKVGLPELTR
LRKG
>PFL_5212 methyl-accepting chemotaxis transducer/sensory box protein
MFNKRLKQQLATLSDELNALQQFKACLESQVLNLELDGEGAIRRANQNFI
QALELDGQPLAGVALESIISRHPQAVPLYREFKAALGRNESYTGQLRLQR
GGGREAWLQVCVQPIRDGAGRLDHYNLICTDQSASVESACEHENLMAALL
RSSAVIEFDLQGRVLTANSRFLACMGYRLDEVQGQNHRLFCEPQEYEGPG
YQEFWARLNAGEYIAQRFKRIDSQGRVVWLDASYNPVLDASGQLYKVVKF
AILITDQVNQEQRVAEAADIAYSISRQTDTSAQRGSAVVTETLDVMRDLA
TCMQQAGDGIEALNEQSLVIASIVKTISGIAEQTNLLALNAAIEAARAGE
QGRGFAVVADEVRQLASRTSNATDEIVGVVRQNQDMARSAVELMAEGRQQ
AEQGLTLAAEAGTVIVEIQDGAQKVVSAVGQFANQLSA
>PFL_1238 DNA-binding response regulator, LuxR family
MATYEILIADDHPLFRSALHQAVTLGLGPDVRLVEVASIAELEVRLTEKS
DWDLVLLDLNMPGAYGFSGLVLLRGQYPQIPVVMVSAQEEASVMVRSREF
GASGFIPKSSSLEVIQQAVRSVLDGDVWWPPQAFEEVSVSAEAKAASEGL
ASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTR
TQAALLLQQLESISSH
>PFL_0131 GGDEF domain protein
MSLFKQLLIAICVFLVVAFSGSFMVSLESSRTQYVNQLRSHAQDAATALA
LSLTPNIDDPAMVELMVSSIFDSGYYASIRVVDLATEKTLVERSGIPEVG
NVPQWFVSLIGLEPAGGDAIVSRGWEQAARVEVLSHPMFAVAKLWQSALG
SLGWLLICGAVSAVLGALLLRRQLKPLDYMVQQSHAIARREFLSLPQLPR
TPELRRVVQAMNQMVEKLKALFQEQAERSEKLRTESYQDSLTGLANRRYF
EMQLHARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLKAVGEQL
LRECDKYPETHNLVTRVRGGEFAVLAPGLVREEAIQLAQSLDSALGNLHA
TGATDVASVASIGLAAFAHGDSPQAVLSLGDQALAQAEAQGDTSWACLDQ
GASAQVGDDHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSR
LLDEQGQTIPAGRFLPWLERFGWTSRLDLLMLEQVLRQMASHEDCLALNL
SAATLADPHALNRVFEILRQHSDLGPRLTLEIGEEQLPEQAMLEQLTRRL
RELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFI
EAIQRAAHSIDLPLIAERVETEGELQVIREMGLYGVQGQLFGEPAPWG
>PFL_4040 sigma factor regulatory protein, FecR/PupR family
MDSRDCASAQARIRDEAAAWFTRLQEPEVSPEQQLRFQQWLAEDPQHRHE
FQLLEALWAATDLVPRARLQALCATPPAKARRRPLLRFALAAGVATLAVG
LGLFSGLNQPVSYSAQFVTALGERRHVALPDGSQIDLNSRSHLQVRYARN
QRLIELVEGEALFNVEHDTDRPFVVAAGAGKVTVTGTRFDVRRDERQTRV
AVEQGRVKVQGRDAATDDFIALTPGQGTHVDEHGKVAQAYAVNPEALTAW
RSGKLVFNNASLAEVVAEVSRYREQPLRVASAAVGELRLTSVFKSDDTQA
LLKALPSILPVEVRTLADGSQEIFSR
>PFL_3390 rtn protein
MPLTAKGPLKRSTRTFWTLLAMLLPIGLGALILYAQAERTLMHSSLETAE
EAIRQFDLMLDNTDIAARALLPQVGRDCDEVRQLALREQVTRRPFVRSTN
LVWRNNNYCSSLLGSFAVPLNPLDYVDGRLWLMSGNPVTPDTALLVYRWS
EGDRAALATIDGYHLTNALRLISRFADLQLQVGGHWLSSDGRVHEGSPPL
AAVASQQLSSSRYPYSVSSGFPEGDVWNYMKSQYPALFSLLVFFSAAAGV
LAHWLQKRSASPTHELQRALGAQEFIPYFQPVVRGDTLAWAGIEVLMRWQ
HPKEGLVRPDLFIPFAEHSGLIVPMTRSLMQQTQQALAPHAAHFTDGFHI
GINITASHCHDLQLLEDCREFLAGFPPGKVILVLELTERELIEPTATTHQ
LFAALHELGVMIAIDDFGTGHSSLGYLRQFNVDYLKIDQSFVAMIGADAL
SLHILDSIIELSAKLDLGIVAEGIETAEQRDYLAAKGVDFLQGYLFGRPM
PSAEFVAALARH
>PFL_3308 diguanylate cyclase, putative
MLYPSKPNNEALRIQTLRELNVLDTSPEERFDRLTRLAKRLFNVPIALVS
LVDADRQWFKSCVGLDVSETSRDISFCGHAILGDQILTVPDAGLDERFHD
NPLVVGAPGIRFYAGCPLTVTNGSKLGTLCLIDIKPRDLDDEDRALLRDL
ARMAEQELAAVQMASMDELTLLSNRRGFEALARHALGVCKRLEKPATLLF
FDLNDFKQINDTYGHAEGDGALKTFADVLRIAFRESDVIGRLGGDEFVAL
LTAADHVETSAIMARLREILDERNATLKRGYDIRFSVGQIEYDAERHPDI
EALLADADKAMYLHKQASKRAR
>PFL_1645 Hpt domain protein
MAEIHLDHTVLNALQEVMEDEYPVLLDTFVCDSEERVRLLHKSEDTILLV
ATAHSLKGSSSNMGATRLAELCHQLELRAGQSAADGIRQLVGEIDGEFAI
VRRLCEQELQRFHC
>PFL_1676 chemotaxis protein cheW
MNKSSSAQGSEDPILQWVTFKLDNESYGINVMRVQEVLRYTEIAPVPGAP
SYVLGIINLRGNVVTVIDTRQRFGLVPTEVNDNTRIVIIEADKQVVGIMV
DSVAEVVYLRQSEVETAPNVGNEESAKFIQGVCNKNGELLILVELDKMMS
EEEWSELESI
>PFL_1112 PspA/IM30 family protein
MNVWSKLLTALRGGANEAGEALVDSQALRILDQEIRDADQELRKSKEALA
EIMARQKLAAERANGSAAKIAEYESYALKALEAGNEALAQEVAQKIANLE
NDLAVEREQADGFAASVAQLRKAVTQAEGNIKHLKQQVDTVKATESVQKA
QQAVAQRYGGSQSKLHTAVESLERIKQKQAERAAKMDAAAELANTSSPDD
ALDAKLREAGIVAGSTSADSVLARLKDRSKS
>PFL_2212 DNA-binding response regulator, LuxR family
MNILLVDDHAVVRQGYASLLRAVLPAMQVREAASGEEALARVAEEVPQLV
IMDFGLPGISGLETTRRLRQRLPQLRVLFFSMHDELPLVRQALEAGASGY
LTKNSAPQVLIEAVHRVLAGHAYIEQPLATQLACTPAQNASDPRLQSMTQ
RELEIFVMLAKGTPARVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVH
LGIDMGVVRVAG
>PFL_1403 sensory box-containing diguanylate cyclase, putative
MATKNSAPLASFIDLLLDAVCAVDVEGRFVFVSAACERVFGYTADELIGR
PMIELVHPADRERTLQAAREIMGGVPKPNFENRYVRKDGRVAHILWSARW
SEVDQLRIAVARDITERKQAESRQAALYAISEAAHATEDLLVLFRHVHRI
IGEWLPALNCSLALYDERSASLSFPYHVDDCEGSPELPGTLIERFCVEVL
QCGQPLLLAPECPVNRVLWSEFAAIQGSRCWLGVPLNSQKGTIGVLMVKS
APGTESYSEQDQELLQYVSAQLAAAIERKQLHARLHYMAEYDQLTHLPNR
ELLRERLRSALARARRESGRMALLYVDLDKFKEVNDTCGHAVGDMLLQAV
ANRLKGCVRETDTVARIGGDEFVILLESVQHSEDAQRVAEKIRRTLGEPL
RLDGHSLNILPSIGIGLYPEHGLEEKQLFKHADEAMYAVKRAQKSRSNA
>PFL_4180 sensor histidine kinase
MRSLRLRLSMTLGAAFILIWALAAAWMLSDLRNQMMFSLDQRLVASARMV
AGLLEQMPALPSHGPSNQINSAALTIPGGMACQVSSLRGQILARSHSTPE
HPLEAEKLGFHDQMIDGAPWRTFTLVRGDMRITTADRQVEREALNMSVLL
AASVPVGVALLGCLWLLWLGIGQSLAPLNRIRDALMRRSADSLEPLQIQP
MPSELRPLLETQNQLFQRIAKTIERERRLTGDAAHELRSPLTAIKTHLQV
ARMTEGAARDQSLARAEEGADRMHRTLEQLLLLARVEGSLSFDDGVHCTA
EQVARLAIQDAAVGARARVKLHMHGKAGEAAVEMPSTLAIAALRNLLDNA
LRHTPEECPVELNLETVGARVRFQVRDHGSGIPAQDLQHLTQRFWRDSQS
SGCGLGLAIVQAIVQRCGCELNFDSRPDGLRVELTLPAHRA
>PFL_4491 response regulator/TPR domain protein
MLAYHQKSFLIVDDFSDFRSSVRSMLRELGVKDVDTADTGEQALRMCAQK
RYDFILQDYHLGDGKKNGQQVLEDLMLEKLISHESVFLMVTAESSQAMVL
SALEHEPDAYLTKPFNRSGLAQRLERLQQRKTLLKPILQALDRGKPVEVL
NACIALCKQDPRYAPLCLRYRADALRDMHQNEALERLYNSILADRPLPWA
YVGLGRLLFKRGQVGEAKAVYEKALKAFPMMPGLYDGLAEVLVAEGDTQR
AQNVLEEAVRLSPLAVRRQALLGKLAMANEDFDSASRAYRQAVSQGAQSR
FKDPESNLGLAHALISKGSERGLDTRTRLEINQTLSAVAKENPTDPGLQI
RARLMKATSLLLNDAETAEKLTEQALLRLDGMEQFMSPEAALLVAKQLQM
LGQASAGASMLKNCAEIYGDDPKVMQNIAKLTDDPTILSSSNAAADINRQ
GVRSYKGGNLVEARELFRKALAMQPKNISIALNMAQSLLHGADANPDAAL
LEECRACLKLVGMMPDTDARYPRYQKLRSKAFGQ
>PFL_5947 methyl-accepting chemotaxis protein
MNIRQNMLATGVVSLLAIALVAGLGLWGQSRLARALVDNELNASALRNHL
EADMMHDALRADVLEALSSQPGDAAAGEEVRNSLREHGDWFRKALAENAK
LPLAPEIRNAITELQPVLENYIHAAENIAGQALKDPQAARLQMPEFSQRF
SEVESRNAALSSQIEASTAQTRELSESAVRQAAWWLIGGSLLAALALALL
TRQLLTRVLKPLEKSVATARAIAQGNLTTPISVDRHDEAGQLQQALGEMQ
DNLRQMITTIRHESEELRGRSHSLSDTSLSIADGASEQADGATNMAAAME
QMISNIAQVAEHARNAQGIAAQSESLAGSGGQVILGVVDGMSHIAEAVNQ
SSRSITALGQSSEEIHSIIQVINGIAEQTNLLALNAAIEAARAGEAGRGF
AVVADEVRNLAARTAQSTREITGMIERIRETTEQAVNSMQTGVSRVNDGV
QMAQQAGTSINEIRQGAQRSAVMVEEISLTIGEQSKASSEVAQRVEMISL
VARRNSQAMRELTQTVEQMENSVATLQTSVTRFQL
>PFL_0008 DNA-binding response regulator
MRVAILDDEPAELARVEQTLREIPGPGEQPWTLHSFERGEDLLRQLRRET
FDLLILDWQVPDLSGLSLLRWTREHMDSPPAAIMLTSRDAESDIVQALNT
GADDYLSKPFRPNELKARVNAVLRRHGLQRNHSEEVQSFNDLSFDDAELT
VTRAGAPISLTEREYRLARCLFANLGRPLSREYLYERFWTHEEIVSSRPL
DTHIYRLRNKLGLTADRGWQLLTIYGYGYRLESVASPEEQGS
>PFL_4919 sensor histidine kinase/response regulator
MKVEKDSELDQATLRIIVAGCALVWFGVIGFLPGQDVDPYVPVMIYISLF
MLGSIVLRMAIARWPGHYPARRILGMVYDYTGTCYGLVVGGEGALPIYAV
MVWVNLGNGMRFGSRYLAIATVLALFALFMVYLLTPYWQAQPYMVLMLMI
TSTVIPVYAHILLKRTRLASEEAIAANLEKSRFLAQASHDLRQPIHSIGL
FTACLREASLGGDERRLVDNIDRSLLNVSQLFRSILDLYTLDNGRVQPKY
ETVHLGELLRDLVRQNSEAARWAGVELRLRPCAHWVRVDPGLLATMVQNV
LSNCFKYAAERPVLIGVRRRGQGLAIVIYDQGRGIAEEHLPKIFDEFYRV
RQVRDKDVEGVGLGLSIVKRLGQMTDLQVAIRSRVDHGTTVSLHGLSLAA
PQRLHGRDEALQSGLLTGLRVCLVEDDRNVLLATSALLERWGCVVQAESS
GENLLTDCDIIVADYDLGTRASGIECIDSIRQQRGWEVPALIITGHDIEK
IHAALHDRNIAILSKPVRPVELRSTLRALREAPLVPAHRAAAPETVTRSG
TG
>PFL_6027 methyl-accepting chemotaxis protein
MSQPRARIASQLGLALALILALVISGSTLFALRSLDSANLDTREEHLASE
ARLLADQLNTFHGSLRESTQRLSGLFENRFSSGLSLHPEQPVSVAGVQTP
GLHLGDVVLNNNFAEVDQFKQMTAGVATLFVRSGDDFVRVSTSLSKQDGS
RAIGTLLDHAHPAYQKLMAGQGYVGRALLFERFYMTQYTPVLDRSGKVIA
VLFVGFDYTDAQNAQFANLKRFRIGQSGSLALLDEQNKWLVPPAGVQAPE
QAAQVMAQAAKEPGKGRFWSDQGEDFYSLAVPFEGGPWSVVASMPKAEIR
AVTWSVGIRLVIGSLLAMLLAVGATVWLLRSKLAPLSDLVRQAQALGGGD
LSARLNVASHDEIGQLARSFNQMGEALSTMVEHIRRSAAEVNGRAQVLSG
LSSGAYEGMEQQSGEITSMAGAVEEFSATSLNIADNMGSTQRLAQENAQQ
THIGRTSMQEASSSLEQIAGALNSTATVINTLGQRSQEIGGIVGVITAIA
DQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTREATDEISQMIT
SIQQETGHAIQTMEQGNRLMQEGLSRNADVASALALIDEQSRSAGEQFAA
ITTATQEQSSTATVLSSNLQSIAQANSEQREVVSNLAVTARELETLAADL
RQEVDRFR
>PFL_3252 response regulator
MPASASTILVVEDDAIVRMLIVDVLEELEFSVLEADGSEAALSLLEDAGQ
HIDLLMTDVGLPGMNGRELAERARTLRPQLPVLFASGYAESIEVPAGMSV
IGKPFSIDQLRDKVRSILG
>PFL_5641 sensory box histidine kinase
MRFRCLLLIGCLCLPLIGRAAPAPQVPTAPLSLEQRQWLAQHPELRVGLV
LQAPFAQYDRRLQRLSGANVELMQALAKALNIELSWRNFPDQAQLERALR
DGEVDMAPGLTQTPAGLRLWLFSDPYMRVPQLVVGERKGAGAVELEKLDS
QARVAVRMPSAVADYLRLTYPNLNLQGVPLERQALQLLLSQQARYAVVDE
AQLSRLSGEAEFAGLAVVGDIGLPQLLRVATRRDWPELASIVEAALHAIP
AKELEQLHGRWLQPKYPRLGESPGVWQNLSLLLVILLLASLAIVFWQRRQ
QRSLEQRLLAAREDIALRAASEEALRLTQFSIDQSTVGILWVNWDSHVRY
ANRAAEEMLGYPAGGVIDRPLIDFEPNLHMDRWLNLWKRARASEEGVQSF
ETQCVRADGSILPADVSLSFLRFRDSEYLVVYLNDVTERRRALAALRESE
ARLQGIAANVPGLVFRLERAPVTGQIDFAYISEGSETLVGYSPAVLAHRD
KGLRSLVHPDDKASYHQTQDQALDTDSDWSWQGRILTRQGQQRWAEIKAI
TRRLDDGAFVWDGIVWDISESKRIELELASSREQLRELSAHLESVREEEK
ARIAREVHDELGQMLTVLKLETSMCELAYAQLDPGLHERLNSMKRLIAQL
FQLVRDVATALRPPILDAGIASAIEWQARRFEARTQIPCLVQVPDNLPRL
SDAKAVGLFRILQEALTNVMRHAQAHTVELTLTLEAHELCMSISDDGLGF
DTASARPTSFGLVGMRERVLIMGGSLSLHSERGEGTTLSVRVPLDQEQ
>PFL_5800 periplasmic binding protein, putative
MSVIARLLTTFLCTCLSLAAHGEKLRIVTEPWAPYVYEENGTAKGLDYET
TAIVFQRLGIEVQWQFLPWKRCLAMLETGQADGALDIFHSDQRDGTLLYP
NEPLSDVEFVMFYANQRPHPFKRLNELKGLTIGTSPGYLYSDDFSNSTLF
NREPAPTHEANFGKLLLGRIDLLITDKRVGQHLLDSLGLRDQVSQNPTVI
SRQSQYLAVRRNAGMDLLVQRFGAELKRFKREPAYAQLSAKYGAEPALPP
VRSSSTRESEKTVEQQESSAH
>PFL_1425 GAF domain/GGDEF domain/EAL domain protein
MPDKALAEEQRLAALYALELLDTARCERFDRICRLAAEYFKVPTALITLV
DRDRQWFKSRVGFAPEQTPIEQSFCAYTIKSGDVFEVENARQDVRFHANP
LVTQDPGIGFYAGAPLITSTGHAIGSLCVIDRQPQRLNAAERQQLRDLAS
LVMEQVEQRQRLTRRDPVSRLPNREQFQSDLYDLADENPGERRVLVLVDA
VDMTVAHELTLAMGLAPFETIVRFLAQQLLAYLGRHVRVYHVSVKRFGFL
LPAAPGIERFLESLVRRLRRQPPGLELPMIPGVCAGTVEFSTDRDAVPDV
LRKAMFALELATLNRSTWAPYDVVRDQAYRRAFNLASDISEALDSGQIYL
MFQPRFALPDGAQVSAEALIRWDHPWLGPISPAEFIPVMERNALIHRVTH
WVINAVLGKLQAWSDGEVQRLSINLSPQDFEDQDIADVLKAACRRHGIEP
HRLEVEITEGAWLRSNPRVLDQLSKIRALGMDVAIDDFGTGYSNFAYLHQ
IPANVVKLDKSMVTDLESSAQHQKITRSVIALARELGYRTVAEGIESFKC
LQMLRTFGCDEAQGYFLARPMVQEKFLARSAAQRFPLQQGY
>PFL_5379 sigma factor regulatory protein, FecR/PupR family
MNSQGPQERSITEAAADWAVRLYAGGLSATEQAQLAQWQAADPRHPQALV
FARQTWEALGELRLDPELAATAPPRRQAARPAATIPRPRRRRRLVRAASV
AMLVLAVALGWLQGPQALLYLQADYLTGKGEVRTVQLADGSQVELDSGSA
IRLDYSGDKRQVQLLAGSAVFDVAPMAGEEKRPFIVQSAGGQTRALGTRF
VVGRESAQQAWVGVLQHSVAVSLDAPAQRGASERVLQEGQSVRYDPQSGV
VALDGLDLQRATSWRRGVLVFDRQPLGLVVERLNRYRPGRVVLTNSALAQ
RQVSGVFRLDMLDAALVTLTQELQVQRFDLAGVSLIY
>PFL_4802 sensor histidine kinase
MAQISRPLRLTFYILVILAGTVLSAGLAMRHAERQTLVEEAARANEQLGL
YANSLHTLIERYRALPAVLALDPELRAALQGPVATETQDALNRKLEKING
AARSSTLELLNHEGLAVAASNWRLPSSYVGHNYGFRPYFKQTRSQGSGRF
YAVGVTSGIPGYFLASAVKADNQDFLGAMVVKLEFPELEHEWSQGNDTLL
VSDARGIVFIANQPGWRYRHLQPLSSNDLEEIKLTRQYDKQPLTPLQHQT
LQRFDDNSSLARVEGPEGRASYLWESLPLAAEGWTLHLLRKPPNAFEETR
NAGLAAAGAWLTLVFLLLFLNQRWRLGKVRQRNRQELEQLVEERTRDLRT
AQEGLVQSAKLAALGQMSAALAHEINQPLTTQRMQLATLRLLLDHGRVDE
AYKALRPLDDMLTRMAALTSHLKTFARKSPSGLRERLDLTAVVDQSLHLL
EARLRAEDVEVVLQLTRPAWVRGDAIRLEQVLINLLRNALDAMQDKPHKR
LEISLEAEDQLWQLRVADNGGGIAEEHLLSVFDPFFTTKPVGDGLGLGLA
VSYAIVHELGGRLSVANQEQGAVFTLSLPIDLEAHIQC
>PFL_0687 sensory box histidine kinase
MGLQLVLDQQGRILSSHGPLRHSLIQLPPSREPPHLLAYVLPGSVLALEG
GPADWSGQVLDLDLRGAGGQPLHLRGWVQRCGQEWHLQLLDIGDLVQQRQ
QALGREQCRVFAAQASEQLRLCNLTRLPDVLHDQLTDLARYWHIPCLGLA
LLDEQEQGWVIHSCYSAHDAPRLWQEGQALGAGLDSLSGNTPQHLNQIQG
LNEHPRLQGIFGHREGFLVPYRDDHGVAAWLLCGCYAVQQHAPYLLDRDW
LMLAAALAGPLLSRLREHRHHLHLERLEALQGLLGAGWWELCPDTAEILL
ASRLAASLHLPEDGARLNVQAWLELIHPADRGELSSRLQELKLGKPLLLN
VRLHEPDPSAPQRWYRLQGQALGRGESQRLVGFMLDISDIKNQQQQAAAA
HARLDNLIASSPAVIYVQRYQEGALQPSFFSASLQPLLGWSLADCTAQPL
AEWVHPDDRDLYFQRCRQLLREGSVHTRYRLRDRHGVYHWVLDEAKLLRD
DLGLPVEAVGLWLDVTEATLAAEQVRQSEERYRILVEDSPAMICRYRPDL
TLTFGNRPLAAYLECAPEELPGSNLGQWLSAEQREGFERRLKLLSPEYPV
STAEINLQLPGREHAWWVWSDRGVFDEQGQLLEIQAVGRDNTEVRRAQQQ
LTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLGNGDVQIDYLT
DKLKRIDAQVQRAARVVDHMRVFGRRSEVEQQPFNPAHAIEGTLSLLAEG
MRGKGLELRISELGFEVQVLGFVDQLEQVLINLLVNARDALLGKQEKQHD
FKPWIAVYGQRDEQWVRLWVEDNGGGIDPRLLERIFEPFFTTKPVGIGTG
LGLSVSYGIVQNMGGRLSVSNSQDGARFCIELPIAEADQITR
>PFL_3822 sensor histidine kinase
MPSPPLDPASALALRSQYRQSQSRAARLRLLVDTGQELLQLPPGQMRQRV
VQRACAFVAMDQGLLLEWSRDGVAHASAEQGHGECLQALRAVAGQAQWLE
RPLAQTGVLRVLLHRADGQPFGALLLANSVPISAPDSEDLESLQLLATLL
ATHLENQRLLQDLQARERSMSELVQRLFSAQEDERKRVAYDLHDGLAQTL
AGLHQRLQGFAGRCPPLPEPLHDELQTILQLAQGCVGEGRQLIGGLRPHV
LDDFGLLRAIDREADRLRDAGLAVHWQQRYPERLPAALEIALFRIAQEAI
NNILKHARANSVSLNLALEAGQAVLGISDDGAGFQPASGQGIEQLGQVAM
QERAHLLGGRFTCHSRPGSGTRILARVPVPSLEHAV
>PFL_2707 DNA-binding response regulator
MTPRVLIVDDDPLIRELLQAYLSQEGYDVHCAATAEQAESFLGQHTVDLL
MLDIRLPGKDGLTLTRELRVRSEVGIILITGRNDDIDRIVGLECGADDYV
IKPLNPRELVSRAKNLIRRVRQASPPQAPANSPSPVKQFADWALDTDRRR
LIDPRGAETLLTHGEYQLLSVFLRNSGHTLSRDQLMDQIRNREWVPSDRS
IDVLVGRLRRKLHDDPAEPELIITIHGAGYLFTASVAA
>PFL_4947 hypothetical protein
MTTITATIVNPYPLSAPKTASTEAEGNSASPLAPVDDSKDGQDKELRVNS
GDANIDAVKAGGDPVKALQKQIEQTQKTLTEQQAQLANVQKGQASDEQKA
QQVMEVQAQIAVTNSTLQVLQAALLQAMFSVDVHA
>PFL_3148 heavy metal sensor histidine kinase
MTARPAAAASSLSMRLGLTVALMGAALVVLLATLAYLALNHELDNLARKG
LDSKLEQIRHSLTSDLKSSDLAARPHSLLDLVMGHDNLQLSILGSDPLAE
PLLIVGGMAQESLPEPLGNIGGDGYVDWRDSRGNPLLSALRQMSLRNGEQ
VQVVLTLDRSNDQALLSAYLRSTVIALPLLLLLIGFGAWWLVQRGLLPLQ
QFSRVAARVTTQDLTHRLKLQGLPRELAELGQGINVMLQRLDGGVQRLSQ
FSDDLAHELRSPISNLMGKAQVTLSRERPPEEYKAVLEASIEELERVTRI
VADMLFLAQVSQPASQARFARVSLGEEARRVIDLFALSAEEKQLQLQPSG
DAWVLGDRLMIQRAISNLLSNAIRHSPPRGQISLRVEQTMEAVSLSVGNP
GPGIAASHLPHLFERFYRVDSSRTRAEGGTGLGLAIVRSIMNLHQGRTEV
SSIPELLTEFRLVFPRLDPAQHDL
>PFL_2957 DNA-binding response regulator, LuxR family
MSLAVNKPLRIAVLDDHALIRMAMQLQLQSVADFQLVGLYASSGELISAL
RDTELDLLVLDYQLQECDLDGLRLIRLLRNKYPHLLILVSSATETPFFVK
QIIDIGANGFLGKSQSLDDLIPAIRTVASKRLYLSPLLAFAVQHPPIGPA
AEPGSPPLTSLETLSPKENEVLRCFLDGLRISQIASKFSRSIKTISGQKQ
AAFRKLGIRTDAELFKVQRKLDLHIASREPAEDAFHDEASEPTLPPTRST
I
>PFL_3124 sigma-54 dependent transcriptional regulator
MLEAPVQRRLLVVDPCDDCHRLLPGLRTIGWDVDSCDLESARERSCDVGL
LRLQPFHLERPEAVKDLISRSGTEWIAVLSQEVLRLQKVGDFVCEWFFDF
HTLPFDVSRVQVTLGRAFGMARLRGQGSIHVDQPEHELLGNSRPIRDLRK
LLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRHDKPFVAINCGAIPE
HLIQSELFGHEKGAFTGAHQRKVGRIEAAHGGTLFLDEIGDLPLELQANL
LRFLQEKHIERVGGSQPIPVDVRVLAATHVDLEAAITSGRFREDLYYRLN
VLQVITAPLRERHGDLGMLASHFAHFYSQETGRRPRSFSEDALVAMGKHD
WPGNVRELANRVRRGLVLAEGRQIQASDLGLLSLQAQDLPMGTLEDYKHR
AERQALCDVLNRHSDNLSVAARVLGISRPTFYRLLHKHQIR
>PFL_3251 sensor histidine kinase/response regulator
MIRPSSVDEQSFRKLLTRNISLPLGVGVLSAIFFVSLITYLLSVIQWVQH
TDRVINNLNESARLTIDLETGMRGFLITGDEHFLDPYEVAKPRIVSELRS
LQELVADNPQQVDRLKRLEALQVEWNNFAQGMIDLRRQSGDYRGAVQAGR
GKRLTDEIRKEYDDAVAMEQQLRLERNENVTRTTIFSVVLYLLFVVGISA
LLAYIGRRDLLALSKSYSDNLEAQEKSARRLEQQAWLRNGQTELAEQMLG
QLSLNLLGRNILQFCAQYLGTPVAALYVREEHGGLRRVASYGFSREQEAQ
EQSLYSDEGLVGQAAQHKRLIRLDEVPADYFKVSSGLGDGSPRSVLVVPT
RDDDRVNGVIELGFLRALSERDVELLELIAGNIGTSIEAARYRQRLQEVL
AETQQLNEELQVQQEELKTANEELEEQSRILKESQVHLETQQVELEQTNE
QLAEQAQILADQRDAMDRKNNELNEAQTQLEERAEELQRSSKYKSEFLAN
MSHELRTPLNSSLILAKLLAENPQENLSPEQVKFAESIYSAGNDLLNLIN
DILDISKVEAGKLEVRPENASVPRLVDGLRSLFQPLTQDKGLEFKVELQP
GAPQMLFTDRQRVEQILKNLLSNAVKFTEKGQVSLTVSAQPGAGIAFAVQ
DSGIGIAQDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSI
SVSSEPGRGSIFTLVLPEQYQEAAEPLVAPPAPVAPVVAPQPASLPQPVA
EAPGADIPRFADDRDKAPFSSRCILVVEDEANFAHILFDLAHELGYHCLV
AHGADEGYSLAAQFIPDAILLDMRLPDHSGLTVLQRLKENAQTRHIPVHV
ISVEDRVEAAMHMGAVGYAVKPTTREELKDVFARLEAKLTQKVKRVLLVE
DDDLQRDSIARLIGDDDIEITAVGLAQEALDLLRENVYDCMVIDLKLPDM
LGNDLLKRMSTEDICSFPPVIVYTGRNLTRDEEAELRKYSRSIIIKGARS
PERLLDEVTLFLHKVESQLSHERQKMLKTARSRDKVFEGRKILLVDDDVR
NIFALTSALEHKGAVVVIGRNGHEAIARLNEVEDIDLVLMDVMMPEMDGF
EATVQIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRL
FSLIRVWLPKMERI
>PFL_4626 sigma factor regulatory protein, FecR/PupR family
MTDFHSAEPPTPAGPHSSTLAMDQALDWLIELEHPNEEQVRQFHQWLAAS
PLNAQAFEKAQAIWNGPQVAQCALTLAAPPKVSRLARLRPHWKPLATAAV
LLLGLFSFSNLPLRLQADHLTQVGERQRLQLEDGSKVLLNTNSAFSSDIN
DHQRVARLYQGEAFFEIPGNRGLPLELDAGPVKASVRDTTFAVRYLDGVA
QVQVQRGDIDLRATHADQRLRLRAGESVRVGPQGFDQPARLDADKELAWV
QGRLVFENCPLSQVLAELRRYYPGWIVNNNEHLAKVAVTGNYRLDQPLDV
VRSLAHITSARLSEFPALVILN
>PFL_4243 sensor histidine kinase/response regulator
MDIKFTNRLSYKQARLTVLVGFILGTALSLLQIGIDYASEDASINREIQS
LLEISHNPASRIAYNIDAELAQELTLGLLRSPAIIRAQLIDNNNTLLANV
ERPPQQSRYRAISDFLFGADRQFEDRLYLSHLPEESLGTLHLDVDTYAFG
SRFLRRAEVTLINGFARSLILTGILLALFYVMLTKPLVRVIRELSSRDPR
SPKQAKLDFPHGHENDEVGVLVKVANQQFDIMATEIQQRRNAENRLTEYL
GQLENIVSARTTELKASNARLSQSNEELEIARRTALDMAQARAAFLANMS
HEIRTPLNGLLGMIALSLDSPLNPEQRQQLSIAHDSGKVLVELLNDILDM
SKFDAGQLELERIPFDLGVLVEDTANLLSQNAAASVELACLIAPDFPALV
LGDPTRVRQIVSNLLSNALKFTRFGRVDVRLSTLGDGVRIEICDTGIGIA
QEAQVRIFQPYTQAGAGITRQYGGTGLGLALTYNLCEAMDGRLSISSEVG
FGSQFCADLPLPCHTPAAPPPALAGKIIAITEAGSGLAELLASLLPSWGL
SYQRCDIEDSLAGLDPDLLITDCPECLFGLRPAIRAPILLVTAYGSFLPS
EEANALAPLQQQARPLARNALYQTLRRSLLGETITLNDAQLEMPVQRRRA
DILLVEDNPVNQLVAKGMLSKLGCAVTVAAHGAEALNQLELHRFDLVLMD
CNMPVMDGYEASRQIRRSGRWPDLPIIALTANAMPEERERCRAAGMSDYL
AKPFRREELIALLDLWVPTTTKL
>PFL_4015 DNA-binding response regulator
MRLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPYDLIIL
DLGLPGVPGLEVLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLS
KPFHPEELHLRVQALLRRSHGQANQQTLQAAGLHLDEGRQCVVRDGQDVL
LTAAEFRLLRYFMLHPQQILSKSHLAEHLYDGETERDSNVLEVHVNHLRR
KLGRSVIETRRGQGYLFGGTAS
>PFL_5653 conserved hypothetical protein
MSIFSHFQQRFESTRQEEFSLQEYLELCKKDRSAYASAAERLLLAIGEPE
LLDTSTNSRLSRIFSNKVIRRYPAFEDFHGMEECIDQIVSYFRHAAQGLE
EKKQILYLLGPVGGGKSSLAEKLKQLIEKVPFYAIKGSPVFESPLGLFNA
TEDGAILEEDFGIPRRYLNTIMSPWATKRLSEFGGDISQFRVVKLYPSIL
NQIAVAKTEPGDENNQDISALVGKVDIRKLEEFPQNDADAYSYSGALCRA
NQGLMEFVEMFKAPIKVLHPLLTATQEGNYNSTEGLGAIPFTGILLAHSN
ESEWHTFRNNKNNEAFIDRIYIVKVPYCLRVTDEVKIYDKLLFNSSLAKA
HCAPDTLKMLAQFTVLSRLKEPENSNIYSKMRVYDGENLKDTDPKAKSIQ
EYRDSAGVDEGMNGLSTRFAFKILSKVFNFDPHEVAANPVHLLYVLEQQI
EQEQFQAETRERYLRFLKEYLAPRYIEFIGKEIQTAYLESYSEYGQNIFD
RYVLYADFWIQDQEYRDPETGEILNRVALNEELEKIEKPAGISNPKDFRN
EIVNFVLRARANNNGKNPTWLSYEKLRVVIEKKMFSNTEDLLPVISFNAK
ASKEDQQKHNDFVTRMVERGYTDKQVRLLSEWYLRVRKSQ
>PFL_1671 protein-glutamate methylesterase CheB
MAVKVLVVDDSGFFRRRVSEILSADSNIQVVGTATNGKEAIDQALALKPD
VITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGA
VDFLPKNFEDISRNPEKVKQLLCEKVHSISRSNRRFSSYSAPAPQPASAP
APAPSSFASSRSPAPAPAPARAAAPAASANSPAPKRKAYKLVAIGTSTGG
PVALQRVLTQLPANFPAPIVLIQHMPAAFTKAFAERLDKLCRISVKEAED
GDILRPGLALLAPGGKQMMVDGRGAVKILPGDERLNYKPCVDITFGSAAK
SYSDKVLAVVLTGMGADGREGARLLKQGGSAVWAQDEASCVIYGMPMAIV
KANLADAVYSLDDIGRHLVEACL
>PFL_4777 sensory box histidine kinase
MPLRQRLENLPVGQKLLAALLVLLTTVLLVANLTFISAAYWISQESMAPQ
ALQTIGRLVSNPTLAIQALNSPEDAEKLLNELDSYTPLRAAALYDGKGQR
LAQLQHGERLKLPERYRHIEAWQMTEFRSNQVITLPRPGQAPGHLLLVAT
SELPMAFYTGTLTASLGILIFSVLLWLVIARQIKRLITQPIHQLEELSRQ
VTREENYALRAARGNHDEIGSLAEAFNTMLSRIEAREQQLKRARDDSQAA
YDQAQGLAEETRHTNRKLELEVQVRSKIEKKLTGFQNYLNSIIDSMPSAL
IALDEQLYVTQWNQEASALSGTRLDEALNQPIFLAFEPLKPFLPQLKETV
EQHTVTKVERVTWFKDEEPKHYALTFYPLMGGAGRGVVIRIDDITQRLSL
EEMMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLSADLPKNL
EHAQQIGVELQTVNRYLESREVPQLLDGIQQAGARAAKIVTHMLSFSRRS
NRQMAPCDLPALIDQAVEIASNDFDLAIGFDFKGQAIIRQFDPNLGPVAG
TANELEQVLLNLLKNAAQAIHQREDDSEPGRIILRTRLNPPWAEIQVEDN
GIGMSENVRKRTFEPFFTTKEIGQGTGLGLSVSYFIITNNHKGQMEVQST
RGQGTCFTLRLPLASSQPLVQEPLPLEN
>PFL_4544 methyl-accepting chemotaxis transducer
MRRPITLLRCTHSTPLECALQGCSALRMPSSGLLYPCHEISSMFLQKSLR
AQILALLSGSLLAMLLIALASFHLLSGGVQSYRELIEGPLRSSQLIDEAN
LQFKSQVQEWKNVLLRGKQPQELNKYWQQFEDRQRDVQNILGQLVQTPGL
DASLKSRVQRLADEHRQLGSAYQKGRDAYVAGGADPSAGDAAVKGVDRAT
SEQMSELVTELRQHGDRQSAEISAAADRTVWLGILVMLASGLLIGLLSLW
LVNRSLVQPIRQLIDYVAQLSRGQLAQRVASERQDELGKLAMAANTLRDF
LAQTFASLQRSASDLDSSSGELNSIATLMSQGTNEQFNRTDQVATAMNEM
SATAQEVARHAADAARAADDADQSAQQGEQVMQQTIHSITQMRGEIANTA
TVIRRLEADSGRIGKVLEVIQGIAEQTNLLALNAAIEAARAGEAGRGFAV
VADEVRSLAQRTAASITEINQIIQSVQTGAVDAAQAIESGQSRSEQSVQQ
VTEAGAMLERITEAVEAIRDMNRQIATAAEEQTSVAEDISRNLTEITSIA
STNLDNVQRTEAASRNLHGLSGQLSEVTARLSA
>PFL_0087 diguanylate cyclase, putative
MSDDANRWKEKYLKSIEQQEKLERRWAARLDLLRRGLVRSTLAAEGTDRA
VDQCMKEMREVVRTDDMDAGLAALLPRLEKAVLDSEQRRETRVEQMSSAL
TALVSQLQSLPLPREVSRPLKAFAKQLDGRVGQAREIPLLLGELSSLQGK
ALSQLETPAEPDRPSLLQRLFGSREASETPAPAEEAVATNPPLPAAAAEA
HPQAEEAPAPEDGAREHYQTPTQALPEAVSAPAAPAPAQPEVQLEPEPGA
QPVASDEPEVAAVPAPAPVVAFVPPVLVQEAPAEPVPAIEVEPQATISPV
AEPQAPVDPGVVAASDSPPAPVAEAALNPDELVPLPTVSPAVLLDSLPLP
AVMAEALAAIDPEQSEHDVLYALPDSPEPSYSSVAKHIEHTLLGLLDDLS
LPERHRPQAEAMRDRLQHGLNWYELLPILDDLAVLMLAITDSGQHEFETY
LKQLNERLEAFQSNLQAASDGHADSSSAARAMDSQIREQVDGLQSSVQEA
ADLDDLKQVLESHLEGLLGTMDHHQKQRDEREREVAARLQSLAERVSSME
QEAQGYREHLEEQRQKALIDPLTGLPNRAAWSERLEHEVGQWQQHGNSLL
LAMLDLDHFKRINDNYGHLAGDKVLKIIANVLRKRLRGSDFIARFGGEEF
VLLLPNTPWPVGVRIVEALRAAIEACPFHFKGEPVTITVSVGLSAFKAGD
RSDLVIKRADQALYRAKDAGRNRVEAG
>PFL_2597 methyl-accepting chemotaxis protein
MSRDGSLAAPVAQPLATPETAARWWAPSLQSAALMALFAGQALGGWSLYL
CLPVAVLVIWLPRLRGRGRPLVANATADDQLSALTRDLSYGTTHNALSAA
GVAYSVTQLAGKLQSQLDAAARIVGNAEVMIRTEQVTSQLSQQALGAASE
AHASSAEGRTVLGESISRMHLLSQRANGSRELIEALSQRSEEIQRVTLVI
QSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTAAATDEVG
VMVADIQQRTSDVVEQIRQLADDLNLGVEQVEHTGRHLDNIARLAAGVEG
QVSEIARGAETNREQLDSLFHAVEQMRSDLAVSDQQTRSLAQAAVQMEGQ
AETISERLAAVGLDDYHQRIYDLAREGARRIAEQFEADLEQNRISLDDLF
DRHYQLIANTDPAKYQTRFDRYTDQVLPPIQESLLPRHDGLVFAIACTQE
GYVPTHNKVFSQPLTGDPEVDNLHNRSKRKFADRTGIRCGSHQQPLLLQT
YTRDTGELMHDLSVPIMVRGRHWGGLRLGYKPEQAPGSGKG
>PFL_5640 DNA-binding response regulator, LuxR family
MIRVLVAEDHTIVREGIKQLIGLAKDLVVVGEASNGEQLLETLRQVPCEV
VLLDISMPGVNGLEAIPRIRALSNPPAILVLSMHDEAQMAARALKIGAAG
YATKDSDPSLLLTAIRKVASGGRYIDPDLADRMVFEVGLTDTRPLHSLLS
EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELV
KYAMEHKLL
>PFL_1493 cyclohexadienyl dehydratase, putative
MLPRLLLCTLLGLSAPALSFAQEPSSHLDQVIERGHLTVCTTGDYKPYSY
LRDDGHYEGIDISLAESLAESLGVRVKWVNTTWKGLMADFQSQQCDIAVG
GISVSLERQKKAFFSQPLGIDGKIPLVRCQDLKRYQTLEQINQPEVRLIE
PPGGTNEIFARAHLPKASLTLFADNVTIFDQLLTHRADVMITDASEARFQ
QRHKPGLCAVNPERYLQYSEKAFLLPRDDVAWKSYVDQWLHLSKATGAYD
RVVNQWLAAPSS
>PFL_3537 sensory box histidine kinase/response regulator
MPDLPEPYHPLTDDRFRLLVDAVVDYAIYMLDAQGRVASWNSGARRFKGY
REEEVLGRHFSCFYTPEDRQAGLPQRALDSAAQCGRFEGEGWRLRKDGTR
FWCHVVIDPIRDSAGGLIGFAKVTRDMTEQRAAEQILKQSEQQFRLLVQS
VTDYAIYMLDAQGRVSSWNLGAQRIKGYAPEEVIGQHFSLFYTAEDRASD
EPRKALEAAAREGRFEKQGWRLRKDGTRFLAHVIVDPIRADSGAIIGFAK
ITRDITEVVQAQKELEVAREALFQSQKLQAIGQLSGGIAHDFNNLLTVIR
GNLELLHKRVGDDPRLRRLLDNALQGTERGVTLTQRMLAFARRQELKSQA
LDLGQLVASLSGLLCSSVGPRIALRVEMAPDLPAVQADLNQLELALLNLV
SNARDAMPEGGSILIEAQLRGATGNLARGQYVCLAVVDDGQGMDEQTLAC
AADPFFTTKGLGKGTGLGLSMVHGLAEQLGGRLVLQSRLGQGTRAELWLP
LASAAKGSPGSEAMPAPGPDHPPLCVLLVDDDSLVLDSTTLLLEDLGHRV
IRAASGAQALQCLEQHRDIQLMISDMAMPHMDGRQLAEAVRRLHPQLPII
LASGYAQRQDGPVPELPRIFKPFSQAQLRDALAQVLAQSAAG
>PFL_5913 amino acid ABC transporter, periplasmic amino acid-binding protein, putative
MRFLPGLLLLLPLASTCAQAELMDDINDRGELRIALEADTPPFNFKDDGK
LTGFEVELGQLLASELDVRADFVVTEAAELLPGVESGKFDVAINHIAMTP
ELKDRFDFSEPYSYSSAQLIVRKEEQRPLFSLQALRGQALGVAQGSQFVD
QARTVEGINLRSYADAQQPIKDVADKQIDAAISDRLLIPYAIRDSRLPVK
EGAKVGPTLSLAIPFQKGNPAFRASLDSALQRIKADGRLMALSEKWFGMD
ASKPPKAEAGQ
>PFL_1550 conserved hypothetical protein
MKNLSILTLASSLLFALPTWACTPDEATAKREQLAQEVSKITEQNPAKAK
EINAELQKMDLSTSSKDLPDNCQLIDQRLKELATAEKKAES
>PFL_1753 DNA-binding response regulator, OmpR family
MQNTSAPLNEDAKALVSGDDKRWNTRALIVDDDVPIRELLIDYLARFNIH
ASGVTDGAAMRQALQAEHFDVVVLDLMLPGEDGLSLCRWLRTESDIPILM
LTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDDRSEQR
ANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLLWVFIERPRRVLSREQ
LLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKSPQLIKTVRGEGYLFDA
RDIG
>PFL_0744 GGDEF domain protein
MKLFKPNARPTLRSVIGRGHLIVALLAISMASLSLTFLGVLALRVYADHN
LHLIARSISYTVEAAVVFNDSVVATEALALIASTEEVADAKVYDSQGQLL
ASWQRPESGFLTNLEMHVASAFLEKPISLPILHQGREIGTINVTGHGGSL
LRFLLSGLVGIVLCIALSAWLALYLARRQLRGITGPLRSLADVAHAARRE
RAFDQRVPPAEIAELDNLGNDFNALLDELEAWQTHLQSENETLAHQASHD
SLTGLPNRAFFEGRLIRALRSANKLNERMAVLFLDSDRFKEINDNFGHAA
GDAVLVAVATRIRAQLREDDLVARLGGDEFAVLLTPLHRVEDAQRIADKI
ISSMEVPIQLPGSLSILTSLSIGIAVYPDHGATPGSLLNAADAAMYQAKR
GSRGGQHTVGAEPPIVQVQNRS
>PFL_1964 heavy metal sensor histidine kinase
MRRLSLSGRLALLFAACTAVVSLLAGVLFSRASEAHFIELDQQLLDGKLL
ALRSALQDVNEAGDFPPRQARLQDELSHQPDLQLRVGDVNGQLWFDSAPG
LPASLPGGAGLRSLEQAGTAYRLYTAALNPGQAASPQLTLILDITHHQHF
LQRMQHLIWLTVGLSALATALLGAWAARSGLRPLRRMGAVAAGVSASSLT
QRLPQEQMPAELAELASSFNAMLGRLEESFQRLSAFSADIAHELRTPLSN
LLTHTQVTLTRPRPLEDYREALHSNLEELQWMAQLVNDMLYLAKADHGLL
TPRREALELAQETDMLLEFYGPLAEDAQIELTREGQAGFAGDRSMLRRAL
SNLLDNALRFTPAGGAVKVRINESAGHLNLSIENTGEGIAQDVLPRLFDR
FYRADPARREGSSEHAGLGLAITQSIIRAHGGQIRCESAAGWTRFVIELP
RQD
>PFL_2312 methyl-accepting chemotaxis transducer
MALLPVRLSHRLTLGSVLLLLFTALAVFAVMTLRGQPKVVEASSALIEQT
GSAIVRQLALQLAGIEGVTASMAHLLEGLPKEQALVMATLPKVIDHEGDK
AIAGGGIWPEPNAFTPGVERRSFFWARSDAGPLAFSDDYNAAGSAGYHHE
AWYTGARNSAPGRCLWSEAYQDPVTQVPMTTCSVPYRQDGAFAGVATIDL
RLDDLARFLKEQGAVTGGYAFALDQAGNVLYFPDAQAGGGGQMLSFDALS
KQQPWLLPVAEALAKPAPTGQVRSLDLDEDGRLQEAARVSLFSMPGSGWT
IGLVTPEQKVTGLARAMTTEILLFLLPLLALLLFFAWLAGHKLIAQLEET
TRQIDALGSGQASDNAELHVARADEIGALRAAVNRYAGQLRQMLQKIASE
ARQLQNEAARLGQLSSTLAQRAEQQRQENTQLATAITEMSSSALEVAQNT
NNCADTARQSLVVVQEGQHKVDANSQSIQQLSAEMAEAAAVIQRLEQDSQ
QVGAVLDVIKAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGR
TQTSANEISGMINDLQQASRQAVQAIQAGETRTRQAVGEASGASDALSST
VTSFDDISQRAQQIAVAAQQQSHVTQEINELAVRIHGISEDNARDAQALD
KVSEAMQALSGRLSNLSQGHR
>PFL_4875 sensor histidine kinase
MKCDPTLYRAAPPSLAVKPRLIRHLFLPPLVILLMIGLGYVGFWISEHNG
IRTLGENGQRQLELHARAVESEISKYTYLPSLLELESSVSQLLGDPSPEH
RQTVNQYLEGLNRRSRSRAIYVMDTTGRVVATSNWRDVDSYLGEDLSFRA
YYQNAVRGQPGRFYGIGSTNGEPGYYLAHGLEEQGKIIGVAVVKVRLEAL
EERWQRARLEAFVSDENGIIILSSDPARRLKSVRPLSDDTKERLARSLQY
YWFPLNELEPLARERLAEGVEKLTFPANTELVSDEKAISYLSQTRPLSDT
PWNFTLLTPLQDLRREAINQGILVAVAFALVAFLLIAWNERRKVIATRLA
AREALQEANSQLERRITERTADLRASNERLKGQIRERRQAEETLRRAQDE
LVQAGKLAAIGQMSTSIAHELNQPLAALRTLSGNTVRFLERGALDTASAN
LKTINELIDRMGRITASLRSFARRGDDQGQASLDKAVDAALQVLNARLEP
LPLQLHRDFTEQTLQIDQTRLEQILVNLIGNALDAMQAQPAPQLWLEGEL
SEGKYRLRVRDNGHGIDLEARKHLFEPFFTTKPGEQGLGLGLTLSASLAA
ATGGSLGVEHPASGGTAFVLSLPLASPTRAEPI
>PFL_3330 sensory box-containing diguanylate cyclase, putative
MENFGLDPSQGRSTSNQALTRATLLGCSGLLLALFLFTGVLLVYIALDQN
LEAEQHNRLDIDKALQSFAGNARTTLKDYALWGDAYQHLHLKVDLDWAFN
RQNFGPTLYRDLGFDGVFVINPAGHTVYSLVAGDLSEMDARDWLGEALPP
LVSAAREAGGKVVDRYQSIAGTPALVLAAVIGPGNDPQVRPDAGPQSVLI
FVARFDPARLLALGQGLDIEHLQVARAATDQSLPTLDLPDGAGTLQWRPA
RPGHQLLVLVMPLLLLAGLLVGLMAAFLLRRADAAAQVMDRQVQALRANR
WALAASEERFRDVAEAASDWIWEVDGQLCFTYLSERFEAVTGLTRESTLG
RPMTELLSCEQGSLGQWLAAPERRSQAIQQCLYRDGQGQARVCRLSVRAM
AAGGFRGTASDITEEVAARRRVEYLSQHDALTGLANRTRMQEFLEGRLQA
PPTLQEPLLMLSVDLDRFKPVNDLLGHAAGDQVLHEVSQRLAQCLRSEDL
VARVGGDEFVLVVTGQVAGHEIEGLCRRLIERIEEPFYIAGHEVFISASI
GIARAPGDASQAEELLRFADIALYEAKAAGRSTWRFYAPYMNVRIIERRR
LERDLRHAIEQDQLLLHFQPRYRVLDGQLMGAEALVRWQHPQHGLLGPDV
FVPIAEDTGLILPLSNWVLHAACRAARAWPEGRLLAVKLSPAEFLRGQLV
ARIAAVLKQSGLEPSRLELEMTDKVLLDDSRHVLTIMQGLKALGVQLLID
DFGTGYSALQYLQTFPLDGLKIDSSFIARLNHNDAGRSIVEAIVDLGHAL
SLRVVAEGVQAAEQFGVLRDIQCDEVQGPHLSPPLDQEALLELYGEAARA
SRPIT
>PFL_1973 anti-sigma factor antagonist
MSTGRIQFAEQDGTFVLKFVGEVRLTLCSALDATIERIFTALNFSAIVID
LTETRSIDSTTLGLLAKLSILSRQKVGLLPTVVTTHEDITRLLQSMGFDQ
VFNIVDRPIPCPECLTDLPSQDQSEEVVRVKVLEAHKILMGLNDSNREAF
HDLVNALERH
>PFL_2708 periplasmic amino acid-binding protein-related protein
MLRRALVLCLSLCLIPLAGATWAEPAPQPQPVLRYCDYPVYPPISWSDGS
QVRGLAPTVVRQVLGDLGYQVQVVVLGNWKRCLLDAAAGRVDVVLAYSTG
QRQQDLLFSRVPVLREEVALFVNRRNLPSFTNLQDLTAYRGGLLFGESYG
QDFDREVVQHGNIEWVSSSQQNFGKLIRQRIDFIPHERRTGQLFIEQLPG
AQDIIALPQAVSVDYLRLAVSRHSPLAPRMAEIDTQLQRQVDSGAIQRWL
AQSQDGYRAMLKAQVEGRP
>PFL_2035 GGDEF domain protein
MPVPIYDPHHPPGGTLKRLPLLKAAVAFIATVFLCLCGLLYLQLEQSWRH
DLMQAEVNSTNLTRAIAQQAEDTFMEADLVLMSLSEWIQALGDGPEQQPR
LQGIFARRVQALTQLSGVFLYDRDGQWVVSSFGDSPHGNDVADRDYFRFH
QQNASLLAHISPAIRSRANGEWIIPISRRLNDSQGNFQGVLMAGIKLAYF
DQFFTSFNIDEQGAMFLALSDGTLIARRPFEERQIGASLARGEIFSKYLP
EATTGNAMITSIVDGVTRLYGYRQLQAYPLVVAAANSKDSVLKGWYASAY
QSTAIVALVLLGVGLFGWVFVQQVRNNERIEADLREAQEALEVIATHDSL
TGLANRRLFERALTVEFGRGARQRSPLSLVMVDIDYFKRYNDTYGHVAGD
HCLTEVAQALKGCCQRKADLAVRYGGEEFAVLLPDTDIHGALAMAEQIRR
SVMQRNIAHSGSPVGCVTVSLGCYAFVPTGRDSIEMFIERADAALYQAKA
TGRNRAMALAADHVGEPLQRSDR
>PFL_1304 signaling repeat/GGDEF domain/EAL domain protein
MDWLGVHFITELPQAGQVVLHCTHNPVLVLLAYLVACAASFATLDMAERV
SHAERPASQRLWRWVGACCLAGGIWAMHFIAMLAFEAPLQIHYDLPLTLL
SLLIALVAAWLAMNTLSHAHMPLWRYGVASIWIGLGIAAMHYVGMAAMRS
SASLYYDPLLMALSVLVAIACSLAALLLSRHLREGSGMFHQLLKYASSLV
LGAAIVLMHFTGIWAMTLVLPAGSLPAPATSDGHLQLGLTLSAIVLLIIG
SGISAALADKKLQHKERDLRRVNALLSQLDQARVSLQQVAHYDALTNLIN
RRGFNQLFAEKLIEKTTFGGMLAVMFLDIDHFKRINDSLGHDAGDELLKV
IAGHIKSSTRSHEDVVARLGGDEFCILINLYDREEARQMAQRIMQKMKEP
IELGGRRMVMTTSIGISVFPDDGKTCEELLKNADLALYQSKDCGRNSLHF
FNSHLKTRATLELQLEEELRNALRDDQGLLLYYQPIYDLKSGRVTKLEAL
IRWQHPQHGLLTPDRFISIAEANGMIAELDNWVLRKACADLAYLSRHGCG
ELKIAVNCSALNLTREELAGEIESALRQAQVAPQRLELEVTENALMGNIA
STLALLKQIRGLGVSLSIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIP
KSTQDMEIVQAIIIMAHTLHLQVVTEGVETPEQQAFLQHHGCDYLQGYLL
SHPVPLRELRGVLEELDQRHAAPINPRAPGPDKGEPGSLDLFPDSPAHHA
DASTAQLIR
>PFL_0126 sigma factor regulatory protein, FecR/PupR family
MDNFPASLPLKPNPDHLVVKQAINWLLRLRNNGANPKLQQQCDLWRAAHQ
EHELAWQRVQSLQQELTDNLRSVPGAQVALHTLEHSSQRLGRRQALKLLS
GALLLGSSAWVGKDLLGWQQWNADFATAVGEQRGFQLPDGTRLELNTDSA
ADLNFNAEQRLIKLRRGEIMVSCGADHGPARPLLVESRHALLEGFDARFV
VRVEDRCTRLSVTHGSVAIHAPHTADGRSARVEAGQSYQISHGLAEPAAP
LAMDVGAWADGLIVTRNMRLDDFLQEVGRYRHGYLGCSAAVGNLRLSGVF
RLEDTDKLLAILPQTLPVQLRYRTRWWVTLGPVA
>PFL_1133 sensor histidine kinase/response regulator
MTPDQMRDASLLELFSLEAEAQTQVLSTGLLALERNPTQADQLEACMRAA
HSLKGAARIVGVDAGVSVAHVMEDCLVSAQEGRLYLQPEHIDALLQGTDL
LMRIATPGGAELVAADIPLYVALMERLLTPGAAMPAAQMPEPPVPELPIA
QPQAPVQAHGAFLGEPEAEAEPVLLAASEPAHEPARPGKRMTEGGERVLR
VTAERLNSLLDLSSKSLVETQRLKPYLATLQRLRRIQSNSLTALENLNLH
LKEHALSLEAQEALADARRLLAESQQLLAEKTAELDEFGWQASQRAQVLY
DTALACRMRPFADVLTGQVRMVRDLGRSLGKQVRLEIEGEKTQVDRDVLE
KLEAPLTHLLRNAVDHGIELPEQRLLAGKPAEGVIRLRASHQAGLLVLEL
SDDGNGVDLERLRQSIVERQLSPAQTAAQLSEEELLTFLFLPGFSLRDKV
TEVSGRGVGLDAVQHMVRQLRGAVVLEQDTGQGSRFHLEVPLTLSVVRSL
VVEVGDEAYAFPLAHIERMCDLEPEAIVQVEGRQHFWHEGRHVGLVAASQ
LLQRPATQESAPTLKVVVIRERDAVYGIAVERFIGERTLVVLPLDDRLGK
IQDISAGALLDDGRVALIVDVEDMLRSVDKLLNTGRLERIARNHQQHAQA
ARKRILVVDDSLTVRELQRKLLINRGYDVAVAVDGMDGWNALRSESFDLL
ITDIDMPRMDGIELVTLLRRDNRLQSLPVMVVSYKDREEDRRRGLDAGAD
YYLAKASFHDDALLDAVVELIGGARA
>PFL_1432 GGDEF domain protein
MPRRSPLYSQRSLVLVLIALLGSGFLATSLLSYYASRDSIRDSIVNTELP
LTSDTVYSEIQKDLVRPVLISSMMARDTFMRDWVVAGERDPSQMTRYLNE
VMTHYDAYTAFFVSNTSLTYYQAKGVLKKVKADEPRDAWYFRVRDMSTPY
EINVDPDLANQDKLTFFINYKVYDYQDRFIGAAGVGLTVDAVIKLIDKYQ
QRYQRSVYFVDAFGRIVLTGADGGPQGARSGQSLHELGSLKELLSQLPKP
HSGSYEYNSQGQGHFLNVRFIPELNWYLFVDKREDGALNSIRQSLYLNLL
ICLVITAIVLVLLSAVVRRYQRKIEAQATLDSLTRLPNRRGFDLLAAQAL
QEAWRDLTPLCAVLLDLDHFKRLNDTYGHLAGDQVLSGFARDLQGCLRQS
DIVCRWGGEEFIVLLKDTDSSVALGIAEKIRLLTEQQRYHYEGQPLQLTV
SIGLTSLQAQDTLHSLLSRADHAMYRAKHTGRNRTCVEMPHSSHE
>PFL_4876 sigma-54 dependent DNA-binding response regulator
MNNELTVLIVEDDPHVLLGCQQALALEDIPCIGVGSAEEALAQVGENFPG
IVVSDIRLPGIDGLELLNRLKARDRSLPVVLITGHGDISMAVGAMQKGAY
DFMEKPFSPERLVDVARRALEQRGLAREVTSLRRQLAERSSLEGRIIGRS
PAMQNLRELIANVADTSANVLIEGETGTGKELVARCLHDFSRRHQQQFVA
LNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHAHQGTLFLDEVESM
PINLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDEMSRAKEFR
SDLYYRLNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRAVPELDNQT
LSTLMSHDWPGNVRELRNVAERFALGLPAFKKPGSSVAQGLGFAEAVEAF
ERNLLNDALQRSGGNLTQASQELGMAKTTLFDKVKKYGLSH
>PFL_3693 sensory box sensor histidine kinase/response regulator
MAERIRAFDWSATSLGALQHWSHSLCSTVQLMLGSPLPMVMLWGPLGYMI
YNDAYAEFAGGRHPYLLGCAVEMGWPEVAEFNRGVMNTCLSGGTLSYHNK
ELVLLRNGVPEDVWMDLYYSPVAGDDQAPAGVIAIVVETTAHVISERRRQ
AAEAAYRAENERVQLALNAGALLGSFVWDVQADVLSCDERFARTFSYPAD
QPLDNLPIDITESRIHPDDLPRIKELAHYSVTQGGPYNAEYRVRREDGSY
TWVLACGRCEFDESGQALRFPGVLIDIQERKIAEEALRQLTRNLEQRVLE
EVNARLSAEEQLRQVQKLEAIGGLTGGVAHDFNNLLQVIAGNLHLLSRHE
AGNANVQRRTAAALTAVERGAKLSNQLLAFARRQPLSPASYNPRHLYEGL
GELLQRALGETICIDVQLPAEPWCIHVDRNQLENAVLNLAINARDALGGE
GRILISAENQVLDSRFCAGKGIAAGEYLCLSVADDGPGMPAEVLKQAFEP
FFTTKADGHGTGLGLSMVFGFVKQSGGHIEIFSSPGQGTRVQMYFARSAE
PSLQQAPRPGQRAGGGEESILVVEDNAEVRSAAVEMLEHEGYRVRTASNG
DAAMQLLLDGLKVDLIFTDVVMPGLIKSTDLATWAKTQAPPIAVLFTSGH
TRDMISRNHQLSPDTHLLSKPYGPADLSAMVRSVLEA
>PFL_3764 hypothetical phage protein YPO2108 , putative
MAANQAILDATIRHAVFLEQLKSGEVEKFGPFLKEIDRSIRDRLARADLT
EYTARRLEVLLQEVDSLLLGIFDRYSEKLNLDLVDIANYEAQFEATSLTR
AAPVGVSFEAAVPGAAAIRAAILSNPLSVRGVDGGKLLKSFIDGFTTTER
QRLTGAIRQGFFEGQTNFQIIKNIRGTKALNYNDGILATTNRNAGAVVRT
AVQHVATQARMETLKENSDVVQAVEWVSTLDSKTTPQCRTLDKHRFKLTE
GPRPPIHINCRSTVVAVTRFSKLFAEGATRASIGDDGPQQVRADLSYYEW
LMQQPSAFQDKAIGPSRAKLLRDGGLSVVRFNELQLDRNFSPLTLEQMKA
LEPLAFEKAGLI
>PFL_4715 GGDEF domain protein
MPDPTSDVSFSEGDISTVDSLTAQQIVAEHKVKTAVRFLLTVCLILILVD
LWQGWASRQYRLQDKEVAMANLAQTLSSQAHDSIKQADTVLFSLVDRIET
EGMDADQLHLLKRLLSAQRNELSQLHGLFIYDQDGAWIVASNGILPPNAN
NSDSEYFIYHRDRPDRGPHVGPSIKSRSTGEWVLPVSRRINNPDGSFAGV
ALATIYLDHFLKLYNSIDIGNNGVINLISSEAKIVLRRPFNEAVIGTNVA
EGPLFTQLLPKGPFGTATVTSYLDGVERVVGYRRVNDYPLIVFSAVNKEE
VLASWRQETVMSTAIVFLLMTVLGGIGYRFIRLMKKQGRIQNELLGAQDK
LMEVNRTLELLALEDALTGLANRRQFDLFTQTEMGRAKRGQRTLALLMID
VDHFKRFNDRYGHLVGDECLRRISAIIRENIRRPGDLAARFGGEEFAVVL
PATDYVGAFIVAEKIRKAVLRAEIEHKDSGIELVTVSIGVGACSPSVEDT
LDGLIGAADEALYVAKTSGRNMSVIAN
>PFL_0526 O-antigen polymerase family protein/toluene tolerance protein
MQPNALHNTANRVFDFICLWILPIGYLLLLCAMFFLPGRSGLHKLYYGLF
SIPTLIALCTRPSELKSLLREPVFIAMLLFCTWAIVSLAWSPPVDSVLGE
IKTPLHTLMLFAGCMLLVRYRGEVLQPLVFCAAIVALIASIFNLYVFVRY
HTPELRMIGAGAFDNPLLSSHVFGFFCVYWLCLSMNCRRYQILWLSVPAL
VIMVAALIATGSRTPLVALTLAALWLSFISWNRRSLMLLGGMLAGGIAVV
ALFSQMLLERGSSSRFDLWRLALEQIANHPWIGHGYNASLSLDPGIGFLL
QEPHNFALGVLYYVGIIGLLPWLFMQAWALFKSWQLRAEPLLILASTWLM
FGIGAGLTEGGGILSRPKEHWFLLWIPLALIAALCISQRARRSPSHTVES
LTQADADKLMANARVIEADGLGPKVLRLDDGSFLKLFRPRRWYTSGGFNP
YSERFVTNSEQLRELGITTPKILGLYRLADGSNAVRYQPLPGQTLRQSLQ
LASSGDERSKLIKRFGAFMANLHEQGVYFRSLHLANVLVLENGEFGLIDL
ADLRVYPSSLRKSLRQRNVRHMQRYAEDCGWLFLEHLDALQAGYAQGTSM
PLATGLLKQLPANDLHQVAR
>PFL_2458 GGDEF domain protein
MPKRMDFSELHWLLAVVQSIDVGIVVLDLECRVQVWNSFMENRSGVPSKQ
AIDQSFFELFPEVERPWFTRKVGRVVALGTPAFTIWKQRPYLVHFNNYQP
ITGQGEFMYQNTTLLPLRSSNSEIHHVCLVIYDLTDVAINSLALQKANQQ
LQHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIALLMLDIDHFKSINDR
HGHQAGDAVIKRVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAGARTL
AERLRQSVEEQEVIHNGQAIAFTISLGIACLDRPARDHRCLIEWADQALY
ASKRAGRNRVSTYAP
>PFL_4067 universal stress protein family
MSQYQRLLLIADPQQHQSPAARRAVALARASGAALHALVFVEPPARTYLW
EEHLEDSEREAYLQRHERWLQVEAQWMAEEGVQVTTQVIWSTQVLKDMLA
YIDEFRPDLLIKDVTLESALKRVFVTPLDCHLLREAPVPVHLVNDAPHKL
PRRIVAAVDPAQSDTQIRGLNTQIIQTAHALALQCDAQLHLLYAYDLMPM
LDGVAPVASTAWSVNCLDELRDSLHKEFERLGDEHNVPQEFRHFIMGPPV
PGIAQFVDEYLVDVVVMGTVHRTGFGRLIGSTTERALYSMPGSILAVKAS
GAA
>PFL_1735 methyl-accepting chemotaxis protein
MSLRSLNIALRASLGFGLLALMVFALGAFALMQMGNMRQQSDEVESNWLP
SVMSVGEMNQDLLRIRALTLRLLINRDPQAITQNENKINEIKSVLGVAQS
RYESLILLPQERVLFDRFKTIEKQYLQRQERVMQLSSQNQLEEAVKVVNG
EMNQLADEMAATLHELVELNKQSATHATDLAQAVFSKSRVWVIGMIALAA
LVTIGLALLLTRSIVLPLAQSVNVAEVVAGGDLTGTITVTGRDEPARLLH
ALKAMQHSLRETIRRISDSSSQLASASEELSCVTEDATRGLHQQSLEIEQ
AATAVNQMTAAVEEVASNAVATSEASRESDRIAQHGREQVHQTVLSIESL
AQDVTANASQVEDLAQKVYGISKVLEVIRSIAEQTNLLALNAAIEAARAG
DAGRGFAVVADEVRALAHRTQQSTQEIEQMIGGIQQGTDQAVSSMQQSNN
RAHSTLEVAKAAGQALEEIASAFTQINERNIVIASASEQQAAVAREVDRN
LMNIRDLALQTSAGANQTSAASQELSRLAVDLNSMVARFSV
>PFL_5686 GGDEF domain protein
MPRSFAVRFSHFVPSLLLLLAGLAAAYVKDLNVFFTSLFNVLPTLVLLLG
GAYCAVYRRQRELFLMVTVYIAYFLLDTQTDYYRDNGRVREDAAVVFHLC
CLLLPLLFGLFAAWQERTHLFQDMVARFAVLLAFGSVALGLEQSYPQALL
NWLAEIRWPALHGSWMSLIQLSYPVFFAAFLLLAIQYWRSPRPLHAAQLV
GLLGLFWMLPKTFILPFTLNIMCSQVMLMIAAAVAHEAYQMAFRDELTGL
PGRRALNERMQRLGRNYVLAMTDVDHFKKFNDTHGHDVGDQVLRLVASKL
SKVTGGGRAYRYGGEEFAVVFAGKTMDECMPHLEMIREIIATYNIQLRNQ
DNRPQDDQQGRQRRGVAAASSVSVTISIGVAERLAEHRTPEEVLKAADQA
LYSAKGAGRNCVIAFGQNRRGAVRMDTAAG
>PFL_1506 cyclic nucleotide-binding protein
MQQTQEKDRDPMSEPTLLNNEIRDWLMDCGLFDQLLPADFNAAAGYFSIS
SIAEGEAIFHEGDAGSFMCIIHSGQVAVQKRNHDGQPLTIATLRSGRAFG
EMAVLDGERRSATCVAASHCQLLNLGKDSLEKMLNDAPKIAAKIIRALAV
SLSKRLRMADGQLLAQQI
>PFL_0052 conserved hypothetical protein
MIPRMSSIRFIPALCLSLLALLAGPQVQAAEAPSRRPDQWAQPVEKQYNL
YQMSPTLYRSALPDKGAVPLLQQLKVATVINFLPESDASWLSAPGINQVQ
LPYRTNHVDDADVLKALRAIQSAEAQGPVLMHCKHGSDRTGLMSAMYRVV
IQGWSKEEALNEMTQGGYGDSSHFKDGIRYMMQADVDKLRTALANGDCST
SVFATCSVKSWFETVSATKPLSN
>PFL_0489 methyl-accepting chemotaxis protein
MVPTMSLRNMNIAPRAFLGFAMIGGLMLILGVFALNQMSKIRGAAEDITS
SSVPSIKSLDEFTQLTLRLRVLSYRLLVNREPDVQQKTIELLEMRNQQIR
AAQVIYEKFITSPEEKSAYEQYLQLLGQYRQIEERMKSLSRNNQVDELRN
LLNTELLNNSEAMNTVLNRLLEINTQQTVDTNQQAAEQYSSAFNLVVALL
VLATGLTFLFAWLLTRSITQPIANALGAAEEIAEGNLTRPIKVDGSDEAG
RLLQAMAKMQEKLRDTLQRISGSATQLASAAEELNSVTEESARGLTQQNN
EIEQAATAVNEMTSAVEEVARNAVSTSEASKNATASAGDGRDLVQETVSA
IERMSSDVQGTASLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEA
ARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGTEHAVDSMR
NSTERAESTLNIARGAGLSLDTINSAIIEINERNLVIASAAEEQAQVARE
VDRNLVNIRDLSVQSSTGANQTSAASNELSRLAVDLNGMVARFRL
>PFL_0342 amino acid ABC transporter, periplasmic amino acid-binding protein
MQSYKKILLAAAVTLAFSASAAAETLKMGIEAAYPPFNNKDASGQVVGFD
KDIGDALCAKMKVECTVVTSDWDGIIPALNAKKFDFLISSLSITDERKQA
VDFTDPYYSNKLQFIAPKAKTDFKTDKASLKGKIIGAQRATLAGTWLEDN
LGDDITIKLYDTQENAYLDLTSGRLDAILADKYVNYEWLKSDAGKPYEFK
GEPMVESDKIGIAVRKKDPLREKLNAALKEIVADGTYKKINDKYFPFSIY
>PFL_1130 CheW domain protein
MDELAHKRNGATGARNALFLVFRIGQERYALQAVDVVEVLPRLQLKPIAQ
APSWVAGVFAYRGVVVPVIDLCELTFGRPAQLRTSTRLVLVHYRGDAGQP
ARILGLLLEQANDTLRCDPAQFQPYGLDNRQAPYLGPVREDAQGLLQWVR
VDDLLPLKVRELLFPAVPLDPASLEEPR
>PFL_4181 DNA-binding response regulator
MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVL
DLGLPDEDGLKLLKQQRQQGLEIPVLILTARDSVTDRVDGLQAGADDYLL
KPFDLRELAARLHTLLRRVAGRSVNLIEHGRLTYDPSTRETLLGGQPVDL
SRREQSLLQALLHNRGRVLSSEQLKDSVYGFNDELESNALNVHIHHLRRK
LGNGIVETVRGLGYRLGPADGEENR
>PFL_0855 methyl-accepting chemotaxis transducer
MNRLSFGMKFSLISVLFFLPMLVTNFYLVRDSYREFQGTRVELQSLDLLG
SSLALRRDLETLNNLVQINASLGQSGKAGDLEGKIVALEKSVLERLQALQ
AVTTDPQQVEVFNAKRDELIAAFKTQQVESSLLNKSGLIGKLLGSAQLFS
QIIASQSGLSRDGQGDIRQLSELITSVTPQVTQLLGEGRAMGAYSLGQGF
LNSSSSTRFDELLVQIEKLQAEYGLKLQDALGSSRAAHDALDTLATTSKG
SLKQASELFEEQVVMADTLDAPWQAFYDQVSGLMAQTYQLNEGTLKFLDV
ELQKRLEQNRRHMVLLVAALALVFLSIVYLYGGFYASTRTTLRRLGAMMD
KVAAGDMTVSFTAHSRDELGELGSVFNGTVLKIHDLIERVGHTVSEVERQ
AGQVQSVSAQSNQAVAGQRTQIEQVATAMNQMSATSQEVARSAAAAVSSA
HSVNDETISGRGLVESQQGSIARLASEIDQSVLVINQLASDSQSISRVLE
VIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTEE
IEDMIGKLHGGVSAAVKAMGSSHAMANGTVDQSEKVQQALENILGAVGMI
VDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGERTAEGAHQTEDASRQLS
AQVVQLKQLIGAFRV
>PFL_3115 methyl-accepting chemotaxis protein
MMNSLRKMSISQRLWLILIVAVLTLVTLGVMMLKQIHGDLYLAKAQKTQH
VVQTAAGVLNYYQGLEAAGSLTREQAQKQALQVIRGLRYNQNDYFWINDL
TPVMIMHPANPKLDGQNLAAVKDPDGFEVFNEMVTLAKAKGGGMVDYRWP
KPGAEQPVQKTSYIQLFQPWGWIIGSGVYIDDLQDEFYAQVLRASSIGLV
IALLMAALVVLIVRSIVSPLRETVHAMANIASGESDLTRSLDTHGQDEVT
ELARHFNGFTAKLRGVVMQLQSSAAALEQSSSELGSNANDAQERSQQQSQ
QMEQVAAAISQVTSAVQDVARNAEHAATEVREAEAQAQQGQVNIDGSLQQ
IDQLSVTIDQAVEVIRTLAAESTQIGTVLEVIRSIAEQTNLLALNAAIEA
ARAGEQGRGFAVVADEVRLLAQRTQQSTAEIQGMIERLQNHSEAAVKVIG
DSSRASQLTIEQAGLAGASLNAIGQALRNLNGLNATIASATLEQAHVVED
INHNVGQAAGLSQGTALAAQHSSAASRHLKELSEQLNGLLRQFRV
>PFL_4922 diguanylate cyclase, putative
MKWRRTFQARIVGVLALLLLVLIAAVYFAVKTATTQAVERQAQLQLKIGT
RVFERLLDLRGRNLQYGVDWLVVDSEFRRAVLSGKPVDILAALAQHSGGI
RSSEMFVLSPEGRVIASTLPVIARDQHFPYDQALRRAMRHNTHMLFVAIK
GRPYLLVQGEVLESLPIARVVMGFPMDELFAQELRSMSNLEVSFLTVDGQ
HPGELFSTQPEFFWSPIINVLADSLWQSLPQLSETHGQRFLNQALQLANT
GDAGDPRVMALLQSPLEQALQAFAPLDREFMWIAMVALVVSLVCALLMAR
RVSRPLEDLAQAARRIGAGNYQAPVTIKRSDEFGVLADAFNAMQSAIATR
ERQLAHNALHDPLTGLPNRALAIERLTKAIATRRNVVLLYLGIDNYRAIN
EGFGTEGLDQMMGELSRRLREVLSQGDTAARITASEFLLLLENTELDGAM
AMADRLHDLLSRPQLIQGDEVRRQICMGMAVYPADGKSAEELISRAAIAR
HDASLKPGYLQVYQQDRDLAHQRQISLIRDLRRAAAEGELFLLYQPKLDL
RRDYLHQAEALLRWQHPVFGVVSPAEFIPLAERTGSMHSLTAWVIEACIR
QLAEWNRRALPVRLSLNISASDLEDDGLEVRVSDYLEGYQVAAEQLVFEI
TESAIMRDPEQALAVLQRLRGCGISLSVDDFGTGYSSLAQLQRLPVQELK
IDQSFIRNLDETSGDAVIVRSTIEMSHKLGLKVVAEGVEYEHCLKLLESW
GCDTVQGYLISRPLPTEAFERWLVNSRVSS
>PFL_0354 conserved hypothetical protein
MKSFSMSVLSGVIAVLLLAAPVSVRSASTSNEPIDPAGVQLEPLQQNGIS
YVSGGIGLDESRAIQQAKGYNLHMTFSVGSGNEYTSDIDVLIQNPQGHQL
LSLSGVGPIVFVQLPAGRYQVITTRKGLEQRSMVDMGVATMRDLNVHWNN
GY
>PFL_0418 methyl-accepting chemotaxis transducer
MYRWLARNLGNVSVSLKLGIGFGLVLLLTLLITATGWTGLGRVIDRGDKL
GNISVIYALTKDLRIARLNYEMSRGEHGPAAVNDFLKQLDDGLQDARAQL
QQPESITMVDQQLDAVAEYQKAFADMTRATANREAARSQLGATADNAVAR
VAEVENSLLQGDSVAQFNSVIDLSKLIQQARFQVRGYTYSAKPEAKQPAL
DAIDNALNNLTSLPSRLPEQHVANLQQASDSLKAYRMAVSAYSDAEEASA
AALKRMAAQGDRLMDLSKQLTVAQTTKRDSDAAQAKSTLLIATLLAMLFG
LIAAWAITRQITQPLQQTLKAAERVASGDLSQNLAVERRDELGQLQKAMQ
RMTVSLRELIGGISDGVTQIASAAEQLSAVTEQTSAGVNSQKVETDQVAT
AMNEMAATVQEVARNAEEASEAAVAADQQAREGDRVVNEAIAQIERLASE
VGHSTEAMGHLKQESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAG
RGFAVVADEVRSLAQRTQQSTEEIAELIVGLQSGTQQVASTLDTSRSLTD
SSVELTRRAGGSLENITRTVSAIQAMNQQIAAAAEQQSAVAEEINRSVLN
VRDVSEQTSSASEETAASSAELARLGIHLQSLVGRFRV
>PFL_4996 sensor histidine kinase
MKLIKPLWRYRLRDTVARWIALTIIMAMLTALAFNALFVQLAGVWAYPPL
AETGLLEKSAAIVRMVEASEPGQRSRLAASVSTDHLSIVWQATRQGLDLP
LLEDSEYRDGSEAFRALLGPPQRHIEAYQPSDWRSDQGRYALLVQLSDQS
WLMFSSASRSWGLEEGTRNLIVIALVLISTGLVALIATRRLAKPLQQFAQ
GARRFAVDFRAPPIDPVGPHEIRQAILAFNAMQAQLQHFIKDRTQMLAAI
SHDLRTPLTRMRLRGEFIEDADQQQRLFRDVDEMQAMINSALEFFRDDAR
LEQATHFDLAELLQTLVDDYRDQSMEILFTGPPRLVYCGRPLGLKRVMTN
LLDNALKYGAQPAIALEQGADQVRVRVLDRGPGIPPEALEQVFAPFFRLE
SSRNKSTGGVGLGLSAARAIVREHGGELRLFNREGGGLEARVELPL
>PFL_5871 conserved hypothetical protein
MPPQPQIMVDLQMEQYMPDPDLEVIAKLISQDPGLSGALLKIVNSPYYGL
SNKIASIQRAVNLLGSRSIINLINAQSIKGEMSDETIVTLNRFWDTAQDV
AMTCLTLAKRTGSQAVDEAYALGLFHDCGVPLMLKRFPDYMTVLEEAYGS
AGPEQRVVDTENRAFNTNHAVVGYYTAKSWRLPEHVTNAIANHHNALAIF
SDESSRNSQLKNLLAILKMAEHICASYRVLGNQVEDHEWNSIGHLILDYV
GLSDYDFENLKETVRELGAH
>PFL_5054 GGDEF domain protein
MNVSSATPRTGKIASNTERLLILSSSLIVVAILGIVTYLLIREHAAAEQA
ATRAANNIVQLIDADVLRNVELYDLSLKGLISAAQRDDLKDVSASIRHLA
LFDRATAAPYKGDILLLDRHGDVLADSASVVPRTGNYADREYFRSHIDNP
DPRMMISPPFRARTADHDWRISFSRRLSDEHGQFIGVAEAAMRLSYFNEL
FRNLDIGRNGTINLVSRDGVLLAQQPPLADDLIGKNFSSRPNFVRILREG
NGSFSSVSSVDQKQRLYTFSQVGDLPLIVIVALSIDEVFGAWQRTAVLIS
GATGALCIALFWLTWQLCRELRRRQSAEQELARLAAVDALTGLANRRTLD
QVLGNEWSRARRANLPLSLLMVDVDHFKSFNDRFGHPLGDQALRAVAQSI
GACVGRPSDLAARYGGEEFAVILPGTDSAGAAVLAEKIRTSIAALPAISE
HAAPLTVSIGINTWSGNADIGLEQWVSDADKALYQAKYSGRNRVVSNMSQ
GGSKRGA
>PFL_4784 methyl-accepting chemotaxis transducer
MNKNLRFSHKILLAASLIVIAAFALFTLYNDYLQRNAIRDDLDNYLQEMG
DVTAKNIQTWLAGRALLIENISQSVALNTDPANVSNLLEQKSVSSTFMGA
YLGNNDGTFIIRPNSKMPDGYDPRARPWYKSAENSSGSALTEPYIDLASG
QLVISIVDSVIKAGQRIGVVGGDLSLQVITDSINALDFDGMGYAFLISAD
GKILVHPDKNLVMKTLKDVYPQDTPKISSELSEITVDGKPRIVTFTQIKG
LSSVNWYIGLSVDKDKAFAMLSEFRTSAIIATLTAVALTIALLGLLIRLL
MQPLHVMTRAMQDIADGEGDLTRRLNIHNQDEFGILGTAFNRFVERIHGS
IREVSSATEHVNEVALRVVSASNSSMLNSDEQASRTNSVAAAINQLGAAA
QEIARNAAQASQQASDARNLAEDGQQVVDRSIQAMNQLSDMISASSSNIE
TLNSKTVNIGQILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADE
VRNLAHRTQESAQQVQGMIEELQVGARESVSTMSNSQRHSQDSVEIANQA
GERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLNQEGV
ENLQATLRACSDLEQQAARLKQLVGSFRI
>PFL_0010 CHASE domain/sensory box histidine kinase
MSVWRRRAEGREPTQAQRLFRGLVREWLWVSLILLPLTAVLSLSHGLALN
NLFYDNLRRFTPLPVDPRILLVTIDDYSLQQLGRWPWPRAIHGQLLDRLS
AAEAKGVLFDVILSEPGSTVENDTRLAAALCRAGNVFLPVLRQGVARYGQ
DIEEIPPVPLLRNCARGLGHINAEADADGTVRSVYLREGPMLAPRAQLTW
LLYQLTEAEPAFPHMPGPGEPRVAQGWLRSNPVRIPFISADAGFPSVPYV
SVLRGEVPPELLRDRLILVGSTAPGLGDRYVTPQSGSQGTTPGVEIQANL
LNGLLQHRSVVALGQWSGMLLSMALTAVLLGLLLWRPRHALWITLGCMGL
GLAGSVLMLRLGYWWSPVASLLGMLLAYLIWNWRRLSVILAYFGWELARL
DSEPKVLPERRRSQAPAGDVLQGQIVALEQALSRTRDTRRFIADGLEYLP
VATLISDPDGKILLANRNAREVFAHSLVGEGLIAQLAALGYPGLTEPALY
PRLEQLPAVEFRDVQQRSLRMELAPLLPVDSDTAIGWLLSLTDLSVERDA
EQQRSVLLRFLSHDLRAPHSAILALLDVQRHQPATPRQVYGQIEQQVRRA
LALTEAFVQLAKAESEAYQFEPSMFAMLVLDAFDQATTLAQLKDIHLEHD
LDDEAEGLVLADQSLLTRALFNLLENAIKYSPVESRVSVRVSCTPGWLRC
EISDEGRGIDAADLPQLFGQYQRFASAKGIDGLGLGLSMVKAVVDRHQGR
ISCQSVVGRGSCFILELPLLEE
>PFL_3635 sensor histidine kinase/response regulator
MYSLLSCILIIAGFVVHWSLNETLSNYRRQMNAAAFNAQQFFNQRESLLK
AISSSAVRTSDERLSSTARNFLASNEQLRVLPFGSTPSRRWALVLTARDL
VEVDSTHSQLLYLVPEQGLVSTLYEPAATGTGQPPSKAVDAPWLRQLDQR
AVQDLLARHPEARTLWYWAGIDGNKQVYLLRPVDEHHASEGWLGLELTEI
DLALDPLGLHQGKYLLYDADGALVLHSANWQVPGSLSRLQADEDSFGLHR
LGGLPDYIVLNKSVGNAGWRLVYYAPVSQLLRDSRGPLYTTLLVTLLLFA
VIFLGARYIRLRLVEPAVRHYSALADSVSLNRRFIEVAPVGLCLMRRDNG
RLILCNESGRRWLASVPGLRERILDEPPARVHAIEHALDDGTFIQLTCAP
TGYNGVAAVLCCISDVTDFKVAEQSLLQAKLLSDQANHEKTLFLSTLSHE
IRTPMYGILGSLEMLRTTALSAQQGDYLEATQQASSALMRTINDTLDMSL
IESGRLSLTSAPFSPVRLVEEVAFSYSARARSKGLRLYVTLDPNVAERVV
GDGERIRQILNNLVSNAIKFTESGHVVLRLHAEAGPSQAPRLRFQVVDSG
PGIAPEFQANLFEPYYRVPSWLGQKAPGTGLGLAICQRLATMMQGQLSAI
SEPGLGSSFSFSLAMEPCTAAPAPDLPRLGVTPVYVRGDIQEVNLNLCHW
LRRWGALAIPYVAERDPPTRKAVLVEAFLGPSRPVAWSGPRVLMHAPGMG
PPQRQAGDSWVARTFSLDSLRNAVAQAQSGIVAERCFASPEALAPSLDLK
LLAVDDSPLSLQVIFQQGRYLGNRMVACASAVDALKRTDLLSFDGVLTDL
QMEHMDGLSFARTLRERGYCGPIIGITGELSPALRSHCESAGIRHLLIKP
VPLDALSEVLQSIKRKVI
>PFL_2061 sensory box/GGDEF domain/EAL domain protein
MPRRSAMSIPHPTNDSAQGLTSMPKPADRIPPLPRIHAVDPRESEQSWEN
APQLLAALNGARLGAWYWDIESGQISWSRGTQALFGFDPRQPLPENLEYL
DLLPIEDRARTIRAFHSVLAGAPLEHAMHHRIRWPDGSLHWLEINGSVLP
DKHGKPRMIGVIREITHQRQREEALSSSEKRFATLFHLCPNTVLLTRLED
GLISEANQYFESQFGWPAEHVIGRTTLEIGLWVNPEQRAQLIKAVQKKGQ
AASLEVQFRASNGQIHDGILSAQKVELEGKAYLLSTFLDTSERKRSEQAL
KDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPIPFHESFD
AFFEGVPTEERNSMRDAYRSLREGPAGNYQLTYRVQLEDGSSRYLESRAR
LYRDEQGSPLRMAGTLLDITEQVEREQRLITSEEKFASLFQVSPDPICVT
LLETGQFIEINSSFTQTFGWTLDEVLNRSAEQIGLWEDAAPRLRRIEQVI
REQALNNVAVVVHHKNGQPLTCIISSRLITVDKQPCIVTNLRDITQQQRS
EAALKASEEKFAKAFHSSPDAISITERDTGRYLEVNDGFCRLTGHRNDEV
IGRTMYQIGIWAEEAQLSTLLAELQIKGRVHHLEMLGRNKRGEILTLEVS
VEPITLNETPCLLMTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDR
LSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEA
SVRMEDTVARLGGDEFVVLLSGLEGTRNEVSEQVRQLADTLRELLSEPMF
LDGQRLQVTPSIGVALIPDHGSTPTDLLKRADIALYRAKDSGRNTTQMFH
NTMQKAASERLRMETDLRLALSRGEFSVHFQPQVDARDNRIVGAEALVRW
QHPELGAQSPTEFIKVLEDSGLILEVGTWILDEACLAFSQLIDQKLVDPQ
HFSLCVNISPRQFRQTDFVERVEHSLHAYALPSSLLKLEITEGIVIQNLE
DTINKMRRLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVRDAT
HDPNDAEIIRAIVAMARSLNLKVIAEGVETPQQLEFLQGLECHLYQGFLH
SRPLPLSEFKKLLE
>PFL_2143 transcriptional regulator, LuxR family
MSLTSSIANLETPHFYFELGQLISSSGHPQFASEMLQLVDKLVPLTQLVL
SEWTLDERQASPLAITLLGRAGLHKDLPLPEPPRRHDPLLQQMLEMDDSL
LIQMNAQARSGPSRTTAHQCHLVSRKANRRCVIALYRAPDQGGFSLSELS
FLKSLSQTLLPLLERHAQLHRQQALKNLRSWSAKPADALQQTPLQREFDE
RLSLGDITLSAREKEVCLGLLTGGTVPEMAQRLSVKNSSVETYLKRAAAK
LGVSGRHGLAKWMVGA
>PFL_3194 response regulator/EAL domain protein
MKSCSILIVEDQPFQYMYLQHLFNELGPYQLEVASSGKEALERLKQRHFD
LVLTDLLMPGMDGVQFIQSLATHRVRPALAIMSASSRRMLMGASLVARNL
GLKVIGLISKPVNLAALRALTAQLPGLANDSSPPQIGVECSPETLREALR
NGQIQAWFQPKKALNNGRIVAAEALVRWIHPQHGMLLPCDFLPALTVARL
EEELLWLILEQALEAQVHWREDGYDIPVSINLPTHLLNSADLADRLYDFV
IQHNGVPARICFELMECSTPEHISNFYAGACRLRIKGFGLSQDDFGKGYS
SYMNLVSTPFTELKIDRGLVQGCHNNEEIAQALTCIIALGRQLGLTVVAE
GVESAHELALLRKIDCTQVQGFLISHAVSSQQFQQLLAQDGPATVY
>PFL_2237 YaiC/YhcK/ArdA family protein
MLPAQDTRGKGLSLARRLYRSRTLGLALGFFCVAAGMAPLQPAPWVWGFM
LFNAFAWPHLAYQWARLARVPFRAEYRNLLVDSLLGGFWVGAMHFNPLPL
ATTLGMMAMNNMALGGLRFFLAGSAAQVLGMGVALWLFGPAFVAQTTPEQ
VYACLPMLTLYPLALGYICYQQAVTLGRHKRELLALSRTDSLTGLLNHGA
WKDQLEIEFQRCKRQAHGGAIALIDIDHFKAINDTYGHVAGDVVLRQLSK
LLRQNLRVSDQAGRYGGDEFCVILPDVPLAHAAELMEALRGRFGALGYEQ
SPALQVSLSIGLAAFNPLHDDAMGWLNDADQALYAAKTCGRNNVTCHPPE
QPSRRLLNSL
>PFL_3053 CBS domain protein
MPVPPPNVGTFKGFLVIQASPSFCLSFWIGKRLPMFARWKPAAINTRPLE
WSRAAIGMALGTLFSVWLCAQVFGMPVALHLIGPLGASAVLLFAVSSGAL
AQPWSILGGYLCAAVMALAVAHVLGRTLGSACLAAGMALVLMCWLRCLHP
PAGALALTLVLADPASVALDWYELGPVMLAAASLLLSALAYNNLTRTRYP
KGPSEAPALLPATAASDSLAITAQDLKLALAEMEEFFDVTPEDLEQLIHA
SEAHARRRSIGQVLASRR
>PFL_2954 sensor histidine kinase/response regulator
MRLPPRPLFFVLILWLALPVFAQDRVKIRARQPLDFLDIRPSIDEQTWLR
NKEALLVGIVSGDLPPYREINQRHELEGIGADYLGALQRELAIPVEVRTY
PNTDAAYHALRSGEVDLVDSATQVEAEDYQVRLSPSYAVTELALYAESGD
LRDYRANISRTRIAATRGMALELYLRTGGRGLIQLYDSPRAAMGSVLDGD
ADIYLGDSLSTGYLSSQLFSDQLVISHSARLPEIQVGFAVARDNTHLQQL
LERALGGIKRCQVISALQMWGGTGNCDSNSFRERLDADQRLWLEHAPPVR
LVISDDLAPYAFFNSRGLFNGIASDLLDLIRRKSGLRFEVSRVGSLKQVD
TRLREGRGDLSILARANPRRASYLYTRPIVTTPYVIVRKTDAPPLAPLNR
DSIGSVALASGYLQSEDLRERYPRLWVQQTSTVAEALNRVRQGKADFTLA
PANLANYYLSFRLQNSLKIHGMMQGLEARIAFAAPQSQQQLIAIIDQAMA
EISPQEYLQILGRWRASGSTDDSYWKGVTAFTWKILGSLGLMLMLAAWWI
LSQRRRIIRKRLDLLQRQLILDQLRDAKEAAEHASRSKTVFLTTMSHEIR
TPLSAIVGMLELVLTRDNDRELNTRSVHIAYESAQNLLALIGHILDISRI
ESGRLTLRPEAASLKDLIESVANVFDGLARQKHLDIHLQFDAWATAQVWI
DGLKFKQIISNLLSNAIKFTEQGEIHIRCLGQVKDEHFLDFHVEVIDTGP
GIPASQIQKIFTPFFEVDSVVSNPNAGSGLGLSISHSLTQLMNGSLQVQS
ELGVGTRMTFKACFQRVADERSSTTDSAEQTVLNSTDQPLCVLIVEDHLP
SQYLLNQQINYLGHEALIAYNGLEGLAMWQEHDVDIIITDCNMPQMSGHE
MSQAIRRMEGQMGVRPCTIIGLTASAQLEELERCLASGMDSALAKPISLA
GLNRLIPKLSLTPPQAQSAVPSLNGDIHAALAEHVINSNNEELQALSKAL
ASGNRQALKAIAHKLKGTAYLLNAQGLLELCVSLEELVAEAAQEQQLSTA
VARLDQALRDLNQSLQVY
>PFL_4716 response regulator
MKLNWETLLPNTGEVIVIEDDSTLRPLLSDILQEIGAKTAAFATADDALT
YMLESSHPVPLVIVDYALPGQIQGVEFIAMVQEKWPSMGVILISGYLLEG
ATIPHGVKYLQKPWSMEELIESVAEVLQPGKPLRKL
>PFL_1105 sensory box histidine kinase/response regulator
MIRRRTYRKLPVQRWLYGPVLVCAIFAWAAPAYAAQNLSFKLVPAFVDLD
PLPLAPAEQRWLKSHRTLRVGISIDDYQPIDITRDRNRYQGISADYLSLV
GERLGTSMEVLGFSEREQAVEALRNGTIDVLTSANGYERGAPGLRFTSDY
MPDLAVVVVRRDEPQPSDDLAGKKVVLLDGYANAAQVHAAYPDSQIMLSP
NLYSGLEAVKQGDADAFIGNEVIVRAYKALRPYLGLQIHVESRLPPTGFA
FATRDSNVLLAQLLEKALQSIDESIRREIQARWTTGLGASNFAEPIELSA
QEQAWILQHQHVVVASQQYPPHVFKDKEGQWTGLNIDLLNRISRMTGLHF
VQKESQTTAQTLELLESGEAQMNTTLTASDDRRLFLNFSHAFGGAAWVFV
VRPEDRRLSSLKQMAGEVLVLPARHTLESFIRRNYPDIRLRSVASYEEAR
ALVSNGEAMATIQSEVQALGPAETGVMVGRSVEGTWSADEFSVRKDQPEL
LSILNKALEALPVAELSALRLKWLGATPVPVPAWQRVPNWVYWAIATALL
FGLISLAWNSRLKRQIQQRLLAEQRLNDQLVFKRALLDGIPNPIFVRDLQ
GRLMTCNKSYEQQLGTSLAQIQGRQLTELDILPPATAQQLHGEFMQLLAS
GESVFADRQVESRDGPIDVYQWAVPFYSAEGQLQGLLGGWIDITERKRLE
NQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLELEKEQARLRG
VPFSEALRVAYQSAQELIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFES
IRQLFEVTARNQGVQLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFT
AQGEVRMTVECQPDESGLECLRISVADTGRGISSEQQAKLFTPFVQADAM
TSSAYGGTGLGLSICRQLVELMGGRIHLLSEPGVGTVVSLELYLERVSDD
FESGPASTQERPPSRSMEVLVVDDLSANRMVLCQQLMFLGHRVVACDNAR
EALQQWRGGTFDVVMTDCNMPDMSGYALAEAIRQAEAQEGRGRCPVIGCT
ANAFEDERERCEEAGMDQLLVKPVTLDQLAQALARFLPPPSFNIQTLRSM
TQADDQVLQRMLHELLRNLAEEQQALEAAHQARDRERLGGTLHRLKGVCC
LIDALPLARACIELEGLVKGRQDEAIDRHWPLLLEVIASLRSDIQAVLDD
>PFL_2573 DNA-binding response regulator
MTRILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLIT
LDRMLPELDGLAIVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYL
TKPFASDEMAARVEVLLRRKNTVKDFDTSLRVADLELNLISREATRADQL
LSLLPTEYKLLEFLMRNTGQILSRMMIFEEVWGYHFDPGTNLIDVHIGRL
RKKIDPPGMTPLIRTVRGSGYVIAEPL
>PFL_1048 general amino acid ABC transporter, periplasmic binding protein
MKMLKSTLAAVTAATVLGMSGFAQAGATLDAVQKKGFVQCGVSDGLPGFS
VPDATGKILGIDADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEID
VLSRNTTWTSSRDAGMGLVFAGVTYYDGIGFLVNKKLGVKSAKELDGATI
CIQAGTTTELNVSDYFRGNGLKYTPITFDTSDESAKSLESGRCDVLTSDK
SQLYAQRSKLATPTDYVVLPETISKEPLGPVVRKGDEEWFSIVKWTLFAM
LNAEEAGVTSKNVEAEAKSTKNPDVARLLGADGEYGKDLKLPKDWVVQIV
KQVGNYGEVFEKNLGKSTPLAIDRGLNALWNNGGIQYAPPVR
>PFL_4011 methyl-accepting chemotaxis protein
MRLSLKAKVLSLAVLPVLLFALVISLSTVLMLRQQAQKEVEETRNRLLTE
AKATLQSYVEVALTTVKPLYDAAAQGDQAARAEVVKLLSNISYGKDGYFF
GYDSETVRLFKGNSPDGVGKSFKDNRDPNGVYVNRELVRVGKDGSHYVQY
SSTQPGSDVLVPKLGYTEYLPKWDMVLGTSVNLDGIDAQVAAVQSSVNQR
MEGMVLSILGIAAVVLVVIAALGMLVANTMLRPLNLMKANLDDIAAGEGD
LTRRLAITSQDELGQLAGSFNRFVDKIHGLVRQITEMTGQLTELVTQVSD
QAQRSEQAMERQRHETDQVATAINEMSSAAHEVARSAQGAAVAAQQTDEE
GQAAKRVVDGSIQQIHALVSDIRNSGTSLDSLQQDVTSIVSVLDVIRSIA
EQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMID
RLQQGTRVAVDAMRRSSDAGDGTSVKANEAGASLDTMAQLIGTINSMNAQ
IASAAEEQTAVAEEINRSVHQIAVAVDSVADETQRGAQTSRSLADLGQRL
GRLVGQFRI
>PFL_0395 methyl-accepting chemotaxis protein
MCICPSFSVVASRHKMQRKALHCGKLTPLVDQPLAVVHLMTRNMKFSHKI
LLAAALVVAVAFACFILFNDYRQREALRSSTEASMQELGSLTTSNIQTWL
ESRIQLLQSLAQQIAVDGSGANSLKRSVGLPAYTGNFQLSYFGGQDGVMF
SVPAGNRAADYDPRARGWYKAATGAQRTIVTEPYIAASSGKLVITVATPV
QHQNQMIGVAGADIDLSSVSAIINSLNFGGHGHAFIVSAEGKILIHPDSK
LVLKNLSEAYPNAAPNVSPGLKEVQQGGKTQFISFTHVNGVPSADWYVAL
VLDQDTAFAMLSEFRTSAIIAMAIAVVIIISLLGMLIRMLMQPLHLMGRA
MHDIAEGEGDLTKRLVIHGHDEFGTLGVSFNRFVERIHSSIREVSSATGQ
VNEVALRVVAASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIAQNAALA
SQHSSDARSLAEDGQQVVDKTIAAMHQLSAKISSSCDNIETLNSSTVNIG
QILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQD
SAQQVQKMIEELQVGAREAVGTMTESQRESENSVGIANQAGERLGSVTQR
IGEIDGMNQSVATATEEQTAVVESINVDITEINTLNQEGVENLQATLRAC
ADLEQQAKRLQHLVGSFRI
>PFL_1986 peptidase S24-like domain
MIDKESIRHMFAERLHAALDAKEIRQHGRGADIIKYLESKGISKSAQAVS
KWLNGSAIPEIDSLTALAAWLGVRREWLEHGVMPALPFEDENQTDEHKAS
TIQTTRVPVISWVEAINWSSRSLDNETLREKTTLPCPLAISKSGFVLQVA
GDSMTNYGPGKSYPHGCLIFVDPEVVAKNGECVIASLPNLHHAIFKVLVE
DAGKRFLKSVNPLYPMIEITDGARLCGKVIGTFIPET
>PFL_3061 amino acid ABC transporter, periplasmic amino acid-binding protein
MTKHWLAVPLLAIACVSMGASAKEWKELRFGVNPSYPPFESTTAGGGVQG
FGVDLGNAICAELKLKCVWVSNDFDGLIPALKAGKFDAIESSMTVTDARR
KQIDFSDRLYAGPTAIVTRKGSGLEPTGESLKGKTLGYMQGTVQETYARA
KLGPAGVKLRAYQNQDQVYADLVYGRLDASIQDKLQAQMSFLASPQGADF
ENSVGISDPLVPSEIAIGLRKDQDELKAMLNGAIQALHEKGIYAQIQRKY
FGDLDLYNN
>PFL_3940 transcriptional regulator, Cro/CI family
MCVEAGNTQRIVRPMDKWIELVKANMKGRKVTQEKLAERLGMSQGGIGHW
LSKRRQPKIEDMNRVLEEIGMGFLEVALVVREKPLLGDDGEPLADGPALL
NKYNPYFRYPVSDWRVAGEVREDGQPAYVPERYELSDYQARGAAFWLVVV
GDAMIAPSGLSISQDMLILVDPAIGAEPGKLVVVQCPGSDEAIFRKLVQE
GGLRYLVPLNPTYPKMLYSDKCRIIGVVVQATAKF
>PFL_4400 conserved hypothetical protein
MSSGIRKRNSTRKYILRLIYRVLLLIAVLIGIVLAVVLYYVANPKLPDYV
PVEQVHYLDQWDAKDRQTYYFTPQGTQVKGLRYEWFSALELPFSEQPFAA
PEYLARFGFLVEPGQKATAQNPGNLPVGFARHQNPGSAEQYLDITCAACH
TGELRFNHQALRIDGGSAQHVLPSSVPTLRGGSFGQALVASLTSTYYNPW
KFERFARKVLGADYEARHEQLRKDFKVSLDNFLRVAWNDTHRGLYPTEEG
PGRTDAFGRIANASFGDAISPENYRIANAPVDYPQLWDIWTFDWVQWNGS
AQQPMARNIGEALGVGATLNLFDANGQPLTGEARYPSSVRVRDLNLIEET
LQRLKPPAWPEALLGTIDKPLAAKGRELFASNCAGCHVPSVSDNNGRPVQ
QLKMLPVAVIGTDPNSASNIADLRYDLSSLQWDTAELARSNVELHPTPSE
PLDLRQLSAAKGLAYITAFVEERAYRDAKVTPEERPRLDGYGLPIGVREL
RAYKARPLAGVWATPPYLHNGSVPNLYQLLSPQSERSTTFSRGTFEYDPK
HLGYRPEAFKNGFEFDTRISGNHNSGHEFRAGQRGNGVIGPLLQPEERWA
LLEYLKVLGGPLESQLP
>PFL_1443 conserved hypothetical protein
MLEAIGNDDLVLPTLPEVALQIRQAAEDPEISVSTLSKVIGRDTALSARL
IKVVNSPLLRAAQEVTDLHTAITRLGVNYSSNLAIGLVMEQIFNARSEVV
EQKMRDVWRRSLEVAGVSYALCRSYSQLKPDQAALGGLVHQIGVLPILTY
AEDHYELLSDPVSLNHVIERIHPLLGDKLLRVWEFPEQLVEIPGQYLDFS
RQSSRIDYVDLVQVATLYCHKDTEHPLSRIDAFSVPAFKKLGIDPDNKAM
CLDLEESRSMLY
>PFL_0983 sigma factor regulatory protein, FecR/PupR family
MNPHLNGQPDFSNQVAEQAVHWLIEMQGGPLSPRQQQAWQQWHDAHSEHQ
RAWEHIQRVNQRLRGLSSPLAHAALNAPKSASRRQVLKLLLILGAGSAAA
WGLREHNPLPPLLADYRSPLGQRRKLQLSDGSQLQLNTSSAVDVRFDGQQ
RLIRLLEGEIMLTSAQDARPLRVQTAQGQVSPQGARLNLRQFKDYTQLAV
FSGTVGVTPLDYATTPPQVAAGQQLNFTGNSWQAPRALDAGSGAWSEGML
VAAHMRLADFLDELGRYRRGQLNCDAQVADLLISGSYPLDDSERILDLLE
ISLPVKVRRFTRYWVTVQARA
>PFL_3147 DNA-binding heavy metal response regulator
MRILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVIL
DINLPGKDGWQVLEQLQGNYPARVMMLTARGRLEDKVKGLDMGADDYLVK
PFQFPELLARVRTLMRRSEVIVQPEVLQVADLQLDPRRHRAYRGSRRIDL
TTKEFTLLHVLMRHSGEVLTRTQIISLVWDMNFDCDTNVVEVSISRLRGK
IDDASDVKLIHTLRGVGYVLEARP
>PFL_4322 sensory box/GGDEF domain/EAL domain protein
MKQKRTFATPRLLGIVWPFIAVVLFQALLGGLSLYVLSAVRGYVAGESLW
SKGQKDAIYYLNLYADSRDEGTFLKYQNAIAVPQGGHELRVALDHQPPDL
EAARLGILKGGNHPDDVSSLIWLYLNFRHFSYLEKAIDLWTVGDGYLLQL
DTVAREMHQRIGSNSASEGDVQRWKSQIFAINDGVTPAAKAFSDALGEGS
RVILRLLLVTNLATALVLIALALLRTHKLLAQRHAFADALQLEKERAQIT
LQSIGDGVITTDVEGAIAYMNPAAEDLTRWKAEQAVGLPLAALFNLLDEN
AQADGFTLIEHILSGQLSGGSEHSKLIQRLDGSTVSVTLVGAPIRNAGKV
SGTVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEFRLEQALHSLI
RQPARHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLREGDTLA
RLGGDEFGILLENCSPEAAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGL
VHIAQTPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMA
WVQRLHMALEENRFCLYSQEITALGHVERGGGHVEILLRLHDEAGRMILP
DSFIPAAERYGLMTSLDRWVVQNVFKIIAQCIAEGREGPMAMCAINLSGI
TIGDDAFLDFLREQFVVYGVPPKLICFEITETSAIANLGSAIRFINELKG
LGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEV
INHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYIIERPQLFTCDSL
QCRPVRPQPLLFKAPGTFR
>PFL_2895 methyl-accepting chemotaxis protein
MPALRTIQARYTLFLVLFIVLMLILTVVGISQLVAPKLRHTEEQVALNRI
AEVAQRIQGELNKVQAQQRSITQTIPLLDSDSIDKVLPGLVDQYGEQKVF
GGGIWPLPGQRTPGRNKHSTFWHRDASGKLVVNTFWNSDPAPNYYEQPWY
LGGMQTAPGQCAWAAAYKDDASAEPRTNCAMAIRRDGQPWGVATIDVTLG
FFNDLVARQEQALKAEMLIVEADGKIISNSSRINGPIVLKNIRDLSPGSP
FAAQVQAALQQRDQGARRVEFDNAGVPSTFFMRAIEGTPWFLASALPTQL
ITAQRDDVLSTLSLLQIPMVILLVLLQVYAIRQLVQRMKILKGNIDALAT
GDADLTRRIVIRAEDELGAIGHSVNRFIQYLQQMIGEVIQATEAMAGSLG
QLQQSSAHSQQILLRHASETDQTVTAITEMSSTADSVAANAAQTADFTRR
ANEHAERSRVVVGEASGSVIALIDEVADATHKVEAMQADAQRITEVLGVI
GAIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTSQIN
EMLARLTQGVSSSVSAMENTQASCQSAADATARVNSGLDEMADSVSQINS
LSTQIATAAEQQSAVTEEINRSMVSIRHMVEELVDSARAGESNTQSLLQA
NAQVSHLMSRFKVR
>PFL_1757 methyl-accepting chemotaxis transducer
MTSAASGRFANLGMAKKLGIGFALVLLLTALVAGIGVWSLQTISQRFDGL
KQMSQLNSGVLKVRLQEQDYALHGDSKTVDSLHESLEGLQALAQQLKVRS
AANQTAMGDVELALADYRKAFDEFVELTQAKDLALEMASWSVSSVANNLD
VLQAGLADDGAYTLKESQGKDGAEFIEQANQISQVSRLMLQAMNEARLRL
DQNRKGGDQEPAEQGKIEQADQALAQAEQLKATVKDAGYQTVLNEVSGHI
GNFSEKLNEYTGLLAQEKQVYQQLHERAAQVMARVDQAYGAQEHSMLGEL
DKNSLLIIGSSALALLVGLLAALSVTRLIVRPLRSVMHVAQQIAAGDLTA
TVEVTRRDEIGQLMQAMQQMGSGLSGIVSGLQAGIEQLASSAQSLSTVTE
QTNLEVSTQKEETEQVATAMNQMTATVHDVARNAEEAAQAAQAADDKVES
GQQVVRQSMQRIEQLADSASRASSGIESLSAEIDNIGSVLDVIKSVAEQT
NLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTQQSTEEIARLVTALH
AAADSSVQQIQSSGELVKLAVSDALQTESALGSIAAAVSLIQQMNQQIAA
AAEQQSSVAEEINRSVTSIRASADQSSLAMQGNAASSIELAQLGVELKGM
VGHFRL
>PFL_4057 sensory box histidine kinase/response regulator
MTTSPPRGAAPKTSRGGEIGAAIRRFDWSQTAVGPREGWPGLLRSTLSQM
LESPESLYLLWGPQMQFFFNDAYRPVLGPRLANALGQTIQTLWADAWPDV
QPMVEQAFLGYSCRHEDLPVNMQRYPGEELTWWSFSMSPVYDEDDEQVLG
VLCHTVETTDRVLLARHARQTEAHLRETRELNTRVLAASNDCIKVLDLDG
QLSFMSEGGLRVMEVSDFNAVRGCPWPDFWQGQGHQEARDAIAAARQGRS
ARFQGAADTLQGRTKWWDVQVTPMLDAAGQPEKILCISRDISATREAQEE
LRRLNESLEQRVQERTQERDRIWQLSTDLMLVADFNGRIVAVNPAWTQLL
GWEREELEGSSFYDFIHPQDSLAAAGAAADLSRGESFSRFENRFRHRDGS
YRWMAWSAVPDPHHIHAVGRDMQAEREAAQALRKTEDILRQAQKMEAVGQ
LTGGVAHDFNNLLTVIRSSTDLLRRNLSEERRQLYIKAISDTVDRASKLT
GQLLAYARQQNLRPETFDVGASVQLLAQMINPLIGACIELRIELPQQPCY
IHADAGQFDTALINMAVNARDAMQGEGLLVVAVERVAQIPPSASQGAQAG
DFVAVSLTDTGAGIDPQQIERIFEPFFTTKEVGKGTGLGLSQVFGFAQQS
GGGLAVHSQPGQGTCFTLYLPRAEALAGLPTPTQAVVPMIDGQGMTLLVV
EDNPEVGVLLAQSLNELGYQTEWATSAAEALRRLGEERTRFQAVFSDVVM
PGMSGIELASRIRCDYPRLPVILTSGYSPALAQGQTREFVFLQKPYSVAE
LALALSAAIGQPEVP
>PFL_2985 sensory box sensor histidine kinase/response regulator
MIAGGAAGALGNYYRVQVEDVYRASIQMQTREQAQDLEQWKSNGFAIGAL
SILGRHNPSLKRIVLEPEPSADLMERATIPLKTLSLVVEANHAFVLNREG
VVVAAHDQHGQTPLGLNVAFRPYFKVALDGGSSVYGAISATTGTRMFYMA
APIFESRTRQDKVIGVLVARFDADRLDASLSKPYSDDLKMILSPSGVVLA
ASSPAFILKSDRAWPWNRFTGEIRRQFSDYRFANGVPERLPFDAHQSVIQ
LDGRRYSLSRVDFDWNDPSGPWTLITLGDLDTLLPGEQVLLIEGLSALVF
LLLLWGGLRRLADARRHKRDVAQIEQSEQRLDMALQSGALGLWDWNLSLG
TVINNDVWLQILGYSKQQMEQAFGHGLERWTALVHPDDYEPVMARLKAHL
NDEVGEYRAEYRMRNKEGQWLWVLDIGKIMQRDASGAPARVTGVLQDISE
RKAVEAQIQQSRQDAERATQAKSEFLDCMSHEIRTPLNAIIGMAHLALDL
PLEPVQRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLREL
VDDVLLLVRQRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLVDNAI
KFTEAGHVCIGVYLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQA
DRSISRRYGGSGLGLTISKKIVQLMQGDIRVKSQPGQGATFKFSVQLSLP
PLPLEENCATPAAPATGATAGQGAINDPVRWLAGTRVLVVEDNRLNQEVL
QGLLQRVGGQVVLAANGAQALRLLLEEGRFDAVLMDCQMPVMDGFATTRK
IRGYPHLRWLPIIAVTASSQADVQGRAVAAGMSDLLSKPLEVAAFYRTLV
RWIKATDMPVAQVPAPPGTRVLNSTYAGIDTACGLAVVNQDLALHRKLLA
DFRDSQQQVIERLWQAHAAGDLATLGFLAHSLQGNAGNIGATAVKEAAGQ
LEEQAGGPAALGPLIEQLARCLEPVLAGLASLPGAADGDLAPQQLGLDPE
QVLALERLAKLLSSHNAQALALIDELYEQYPCGPLRAIQERIYRLEFQQA
HDLLVDFQG
>PFL_6114 response regulator
MSKVSVLVVDDASFIRDLVKKCLRNYFPGIKIEDAINGKKAQAMLAREAF
DLVLCDWEMPEMSGLELLTWCREQDALKAMPFIMVTSRGDKENVVQAIQA
GVSGYVSKPFTNEQLLTKVKQALNKVGKLDTLMNSAPTKMNSAFGNDSLS
ALTGGKPAVVGAASAPVNPFAKPAAAAPAPAPAAPARGLLNSPPVKAPAP
AAAAGGGRGQGQLRLSSGNQQCVIKALSIKEALLVVKRTDSLPQVLESAV
LDLEQGDNAEVARLNGYLHAVVAFEPKPDSEWLQLTFRFVDQDAQKLDYI
SRLIARGTAQKHFVPGA
>PFL_1267 amino acid ABC transporter, periplasmic amino acid-binding protein
MKKALLTLSALALCMAAGSALAKEYKELRFGVDPSYAPFESKAADGSLVG
FDIDLGNAICAELKVKCKWVESDFDGMIPGLKANKFDGVISSMTVTPARE
KVIDFSNELFSGPTAFVFKKGSGLSEDTASLKGKTVGYEQGTIQEAYAKA
VLDKAGVKTQAYQNQDQVYADLTSGRLDASIQDMLQAELGFLKSPQGADY
EISKPVDDPLLPAKTAVGISKGNKELKALLDKGIKALHDDGTYATIQKKH
FGDLNLYSGK
>PFL_4590 methyl-accepting chemotaxis transducer/sensory box protein
MFNLHHKADLLEIERFNCALSEANAKLAAISRSMAMIEFSPDGIVLDANE
NFCQVMGYSAEDIRGKHHRIFCEEEFYRSEEYSKLWRDLGRGEPVSGTFL
RLDKRGREIWLEASYMPVFDADRQVRSVIKVASDISERIHVEHENQSLLN
AIGRSMAIIEFSPDGRIITANDNFLKTMQYTLNEIVGQHHSMFCHRSEAE
SPEYRQFWASLNRGEFHSHRFERENKYGQTVFLEASYNPLFDTKGRLYKV
VKIASDITDQMTTLRSAAESAHSTSVQNDACAQKGSEVVQQTVEIIQQIS
HDLNEAAHSIDAVSKQSDIIGSIVQTIRGIADQTNLLALNAAIEAARAGE
HGRGFAVVADEVRSLAARTSQATVEIVEVVRKNHDLSTSAVTSMQSSLSR
TGLGVELANEAGEVILEIQQGSRHVVDAISQFNSTLQLQ
>PFL_0248 cystine ABC transporter, periplasmic cystine binding protein
MNFSVLRRNLLIGTLGLALGAGLMGQAVAGEQLQKIKDAGVINVGLEGTY
PPFSYVDENGKLTGFEVEFSEALANKLGVKVKLQPTKWDGILAALESKRL
DAVVNQVTISEERKKKYDFSIPYTVSGIQALTQKKDEGKFKTAADLGGHK
VGVGLGTNYEQWLKDNVPTAIIKTYDDDPTKYQDLRVGRIEAILVDRLAA
FELIKKTKDTLVVSGEPFSRQEAGVALRKGEPELLAAVNKAIEELRADGT
LKKLSEKYFNADVTQ
>PFL_0885 DNA-binding response regulator, Fis family
MSEEIQVEGEELPHLLLVDDDATFTRVMARAMSRRGFRVSTAGSAEEGLV
IAQQDLPDYAALDLKMDGDSGLVLLPKLLELDPEMRVLILTGYSSIATAV
EAIKRGACNYLCKPADADDVLAALLSEHADLDTLVPENPMSVDRLQWEHI
QRVLTEHEGNISATARALGMHRRTLQRKLQKRPVRR
>PFL_0675 response regulator/GGDEF domain protein
MTEPEDPSRERLKHHFAQRVIHQARQILEIWQRLQRSEWSTTDMSELCEA
NLRLLRFAERFEQPEHTQLARSISQSLEAVDANRGRLSSNLITDLNRLMQ
RLSRTGLRHGDQLEQTFLPPLRKPIYVMLQDHDRAERLAKQLEFFGLSAQ
SLDSIPAFRSSMVERLPAAIVIDVDFCGAGMGLTLAAEAQVGLEQKLPLL
FFSLHETDTPTRLAAVRAGGQEFLTGTLEASSLLEKIEVLTCVAQYEPYK
VLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM
YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLT
KPIKPRHLITTVRNRAARARNLKARMVRDSLTGLYNHTHILQLLEDCSFR
ARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDF
IGRYGGEEFAIVMPDTDQDAACKVLDEIRQRFAEIHYPAQPQDLWCTFSA
GVVEMQEDSDSLIMASQADEALYRAKHGGRNRVQAARSSQSAIFSSESTD
SVITL
>PFL_2955 DNA-binding response regulator, LuxR family
MSKSVLIVDDHPVVCEAIRKTLESQGYTIVGETADGISALNMILSLRPDI
VILDVSLEKMDGLTVLKRIAQANLDVRVLVFTAQSVDTYAMRCLQAGASG
FVSKNEPLTKLLKAVDTIVEGYVFFPKKSMPFSDGGRGKHSSDVLAALTN
RELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKINILSKLGVTSVVDLVN
IARQNELV
>PFL_4163 protein kinase
MIRFCPNCQTERPLAEIFCEGQVDNRACGWELSAEAIHPEGWRPQPVITL
EALEPQPPVAADSGSPLLCGNGHAMADGDLMCLVCGADPLAPEQQPPAAP
PAADSETVIEGWRLLRQISSGGVRERFIAEHRETAHQAVLTLYQAGAEPD
PSVYEALKRLPREHVPEIILTGRWDERAFEVAEELTGGTLADLGIVVSDR
AAVQHIVRELGQALHAFSEAGLRHRDLRPATLLVRSREPLDLVISGFGSA
RLSEFDLDIVSPLETSRYMAPEAIAGGVAAASDWWSLGMILLEQLTQGEC
FAGINANAYLIHILANGVLLPDDLDPRLELLLRGLLARDRHQRWQWPQVQ
AWLQGESPSVPASVASEEDAEEGASVALGSRRFRRPGPFALAAAEVEHWP
QALDHLLRGVIVTWAEQAGLPARQLAGLRQVAQHEGLDDDTRLMLALKLL
NPEMPLIQRGEIVTPGWLLEHPLDGYRLISGPAPDLLERLETEHWLSRLK
LRTEQVRQRAQHQAIELDEEQLRIYLLSSSRARLAAQWEERQRLLPDSEH
NGILSLADRRSISEEDLIVLLSAAIGQFRSVDAILEEAATLAREAVVLSF
DAASARALLGLPRPALYREVDERISGFARCGVPSVDEWAEQFRLERRMPL
ARALVLLAIGAEQWLEPQKQHYVSQILDFFEKKVASVVLRGPLVRMSIGK
TTARVDLNELHSERSPAPALLDHLVARNAQPISLDPACFAENPQLDARLN
SLYRQSSLYKRDTGIDGLYLGFPFLLTRDARGTTRTRIAPLLLWPVKLLL
EVGSRGKVALVFDSEREEVRLNPGLDTLLGIDAAKLWRKAADELLGRSAL
KAADVMDAFGMLATASSRVLGSLPPPSTEVQPYQDQLACAAVLFHVAFMG
QAIGEDLRQLKALPPGGTGLETALRLNPAEPDSGDSAATALAPELQRFFT
VASDPSQEAAVLQARQAPGLLVEGPPGTGKSQTIVNMVADAIGRQRSLLI
VCQKHAALEVVHKRLVAEGLGNRVVMLNDINRDREPVIRSVREQLEALFK
DDAVQQPWLHQRERLAARIEALEGELDRFHQSLHRIDEHCGLSYRQLIGE
LIGLEQGPAALDVPVLRQHLAALDIASLTRLEEACAPLIRLWLPARYEHS
ALAQLQPFPTDAATVQAFNQGFERLLSCEEQRLETLQAHPADFEVDDPAP
YRAWLDQHLHSLLGLDDERRQRLARWLPLFRGSNGQAAEGDGLIQALQAL
AQQLEQCDATAYQADLAPGLSALPAAQLRTLQQRARAVIQGRSWLARLNP
LRLIRQRQLLAFLAEQGAAAQPQRLPELLAAALLESQWRPLRAQLQHLHQ
QLSLAQIASDCGPGLLPQVRQDLGQLQEMRALAMTLAQAPRVEQLDAVVL
TGERRSLDSLLAGYDAAFIRHSVRQDSLNALQRLDQWLQPELLGQLRQRV
EHNQGNQSALNRLRDALPTLSAYQAFRARAGQLSPADLELLVVLRDYQDA
LDAIPAEQLEAVVRHMLNREARLGWKRQIEQRQPELMLEHSETAAKIASL
GEADTQMRNLNRQLLSEGIELSRLGTRKQWEDVTRLTGRRSRRLREFMEM
GAGLGLMSLRPVWLMNPDVASRVLPLKPGLFDTVIYDEASQMPVEFALPT
LYRGRVTVVSGDEKQMPPTAFFSSRVESDEAELFDGDQPDADADEEQREA
FEDTWNRREIKDCPDLLQLARSSLPSTTLQIHYRSAYRELIGFSNASFYG
NRLSIPVRHPQANILAIKPLELIRVDGVYQQQVNPDEAERVVDYLAELWQ
APYAERPSVGVVTFNRKQADLIEERLELRAEQDPAFRAAYSQERERSEDG
EDMSVFVKNVENVQGDERDIIVFSSTFGRNSQGSFRRNFGVLGQTGGERR
LNVAVTRARRKVVMITSMPIADISDMLTTQRPPASPRDYLQGYLEYARAL
SAGEFASGHSLLGRLVTERQDAKVQHNAHSDGFTQAVAAYIRTLGWSPVS
ANEGDAFGLDFAIEHPDTGLYALGIECDTPRHGLLARARSREIWRPSVLR
RAIPHLHRVSSQAWYHDPQSERARLQAAIEQALQPLAGADSVTQPPALAD
TEQTP
>PFL_5041 sigma-54 dependent transcriptional regulator
MTAKSLLTALLPLVTDLSRELPEGERYRRLLEALRALLPCDATALLRLDG
EWLVPLAVNGLSTDTLGRRFKVSEHPRFAALLSSPGPTRFASDSDLPDPY
DGLVEGLDDHLEVHDCMGCPLFVDERPWGLLTLDALDPQRFEPIELDALQ
AFASLAAATVSAAQRIERLAQRAENEHQRAEVYRQASGQNREMIGQSKAH
KRLLEEIKLVGGSDLTVLITGETGVGKELVAQAIHAASPRAEQPIISLNC
AALPDTLVESELFGHVRGAFTGATQDRRGKFELANGGTLFLDEVGELSLT
VQAKLLRVLQSGQLQRLGSDQEHRVDVRLIAATNRDLAEEVRNGRYRADF
YHRLSVYPLRVPALRERGRDVLLLSGYFLEQNRSRMGLGSLRLSVEAQQA
LLAYHWPGNVRELEHLIGRSALKALGNHPERPKILSLDAGDLDLPRASER
TSAPVEPASATQAMPAVAGDLRQATDHYQRQLISSCLERHQHNWASAARE
LGLDRANLSRLAKRLGLR
>PFL_2572 sensor histidine kinase
MSLLNPSKGWRSSSSRLLALYSTLFVAWSCILMGVLYYEVSTYLDSLAKH
SLMQRQHLFARFEGDQLVEALTTSMTFDMRAIDAYGLFDEQRRPLSGPIR
QIPDDLPLDGKIHELKNCIDSDDPSLPRDSCDAVATHTRDGRWLVLVRDN
GSLFAVTRIILHALLWGISLTIIPGAAGWHLLRRRPLRRIRQIQASAEAI
VAGDLTRRLPLSDRRDELDMLAAIVNAMLERIERLMHEVKGVCDNIAHDL
RTPLTRLRAQLYRLQQQAEEGSPQALQMDQLLAEADTLMARFRGLLRISE
LEDQQRRSGFLVLDPLPLLHELYDFYLPLAEEGQLTLVLDVPASLPSLTG
DRALLFEALANLLSNSIKFTPPGGEVILRGIDDDGSPRLEVLDSGPGIPA
AERAAVFRRFYRVDENNAQGGFGLGLSIVAAIVSLHGFKLEVGSSERGGA
RLSLDCRPSLIADN
>PFL_3716 GGDEF domain protein
MVHPPPRRSGLARESHPPPGAGLAGLFAGKPAPAGRKKRVRRELIRPHAG
FPRRHPPVTNICCAGALSLLAKRIAAMFSVLKPHRWKLAALLLAANAGLL
LHLACGSLKSVSEWQWLDIIGEGGSALLALVWLGLVLKSRPAGRVTNYLA
LGLSCIFFSWWIDSLDEFIRLPDSITWDHWLESGPMPIGMILLTIGIYHW
HREQLAISAQMEKKERLFREHRQFDKLTPLAGADYLKRELASSLQDSRRQ
QQPLSLLALDLDHFAAINQDYGHAEGDAVLQALSHVLLLNLRRQDLLCRL
AGDRFVVLLPNTGESQARLLALELQQAVQGLAHKTRQHGERLHLAASTAV
VMALEETPEGLLKRLNLALARAKQPLAKTA
>PFL_0197 cyclic nucleotide-binding protein
MDLHQWRECLMTGQWFSHLPASLQNSLLDSARLRRLTAGQCLFRRGDPPC
GLYAVLEGTVRVGAVSEQGKEALLSLMEAPHWFGEICLFDGQPRTHDAYA
EGACTLLQVPQANLLQLLEQQPQYWRQFALLMSHKLRLAFINLEQLSLMP
APARVASRLLAMAAGYGEVAQARRVLQLPQEQLALMLSLSRQTTNQILKE
LQHQGILRLSYGEIEILDTERLRALTSP
>PFL_0700 response regulator
MTSPSSRQQLLLVDDEEDALLELAELLEGEGFCCFTATSVKLALDHLTRH
PDIALVITDLRMPEESGLSLIKRLREHTARQHLPVIVMSGHADMDDVSDL
LRLQVLDLFRKPIYHVRLLETLNNLFPEPRLHIVGP
>PFL_3548 amino acid ABC transporter, periplasmic amino acid-binding protein
MIRSFKRIVRWAFLCSSLAGGSVLLGAPQALADCKPAHSFETLTPGVLSV
AAWVFPPYSIPGPGNQLSGVDGEIIKRIAARECLDIKLTVVDPAAVVQSV
IARRADVGIGDWYRTAERSKVLGLTAPLYLDVMGIISSEGYSKISELKGQ
RIGTVQGYLWVDDLKKAFGDNLVLYPNPVAMAQDLAAKRIALGIDSFAVG
VASQQKGAYRGMSIKVSEPDPRVKATLEPGQTSFPHTKANTALSVALNEN
IQALHASGEIAEILGSFGLDKQAANVGAPRLVE
>PFL_1903 conserved hypothetical protein
MRLTWCALFLFSASLEAAEPPLRFAIADSWTMPAIEVEGDQPTDGILFDT
MNSLARHLGTPAQFHVLARARVQNAMAQGEVDVRCYAAQAWLPNLSGDYL
WSVPLFIQRNLLVSTHPEPSAVNLQQLSRQHIGTVLSYTYTPLQPLFDTN
QLIRDDARNEEQVLQKLVVGRYRYAIASQWTLDWFNKTQATGNPLYSVAV
LQEQAVGCYVRNDPRVPAQRILRTLLRMKMSGEIDAIIQRYVGPQDDAQP
PDIASP
>PFL_2454 response regulator
MFLPWVKERGARFRVRIGPVLKTRRPCSVNEFIVKAPLITLVSGPVCSRL
NPSGSVTLMNPATPVNPGAQSRLILVVEDEPTVLEFLCEILQDEGFATQA
MDSADRAWEFLQEQAADVALLLTDITMPGTLNGASLSNLCGERWPQLPIV
VMSGFETPESSGVRYPVSFIRKPWTIGQILDCVEGALKSAQG
>PFL_4871 amino acid ABC transporter, periplasmic amino acid-binding protein
MRIVPHLLGAAIAAALISTPVFAAELTGTLKKIKESGTITLGHRDASIPF
SYIADASGVPVGYSHDIQLKIVEAIKKDLDMPDLKVKYNLVTSQTRIPLV
QNGTVDVECGSTTNNVERQQQVDFSVGIFEIGTRLLSKKDSSYKDFADLK
GKNVVTTAGTTSERILKAMNADKQMGMNVISAKDHGESFQMLESGRAVAF
MMDDALLAGEMAKAKKPTDWAVTGTPQSYEIYGCMVRKGDAPFKKAVDDA
IVATYKSGEINKIYDKWFQSPIPPKGLNLMFPMSDELKALIANPTDKAAD
DKKS
>PFL_4827 GGDEF domain protein
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVASDAQR
ILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETMLAEK
SRDLQKSSSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYG
QGFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTTINPD
RPSEHQLPLLKGHEKNELGIWINTANQLLASIERNTHLRHEAENSLLRMA
QYDFLTGLPNRQQLQQQLDKILVDAGRLQRRVAVLCVGLDDFKGINEQFS
YQTGDQLLLALADRLRGHSGRLGALARLGGDQFALVQADIEQPYEAAELA
QSILDDLEATFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA
KTRSRNRYQFYIASVDSEMRRRRELEKDLREALARDQFFLVYQPQISYRD
HRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACRQL
REWHDMGFSDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVT
ETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI
DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEG
CHEGQGYHYSKPLPARELGAYLKQAQRSNAAIL
>PFL_2926 sigma-54 dependent transcriptional regulator
MSLITHPNARELTKSVRATVLVFKDPRSQELLSRIERLAPSEANTLIIGE
TGTGKELVARHIHHLSRRGREPFVAVNCGAFAETLVESELFGHEKGAFTG
ATTHKAGWFEAANGGTLFLDEIGDLPLNMQVKLLRVLQEREVVRLGSRTP
IPINVRLVAATNVNLADAVVAGHFREDLFYRLHVATIRLPPLRERPGDIL
PLAEFFLEEHCQRLGYNRASLTEEAERKLLEHSWPGNIRELENAIHHALL
VCRQQRVAPGDLHLVDMRSSGIRQEQAPLAVPGPQAPADLGRALQALFEQ
NIPDLYEHIEETIFREAYRYCHGNQLQTGRLLNISRNIVRARLEKIGELN
KPLATSAS
>PFL_0089 EAL domain protein
MPAAREPLRTWFHRPWTLAMLAAVLSAVILLLGSAGLAMHQVQQRESEQM
NAQGQRFLERLEQLFGQLREGLDVLEAQPLRECNADLIAALQQVSYSYRF
IYEAAYRDATHTCSNWPRQNLLPAARPPDIRGPTYSYWLNTSTQPNENLA
ALMLGRGNFRVATSRGHLTDVVDLPPGGSLMVVVDHGARAIPVLGPARAW
PPAQPWRGGRDGPLQVTPDLLIYRMPTRNPEYQLVLITPRASLQGEVLDG
WWWLLPSSLVLALFIGGLVYQLVRQRQSLGAELQGALRRGELQVLYQPIF
DLSSRLCVGAEALLRWRRPDGTLTSPDLFIPLAENTGQIRQITDFVLQRL
LEQLGHVLRANPQLYISVNLAACDVMVPRIGMVMARLLATHRVAARQIAF
EVTERGLIDVVVARNNLQALRDVGHQVLIDDFGTGYCSLAYLQSLPVDCL
KIDKAFIDALGHDAASSGVAPHIIRMAHALKLKVIAEGIEFEDQALLLSS
EGVSFGQGWLFAHALSALQFTELITRGRRLVARRVDDEA
>PFL_5050 DNA-binding heavy metal response regulator
MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVL
DVMLPGLDGFGVLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGK
PFSFLELVARLQALTRRSGGHEPVQISIADLWIDLISRKASRAGSRLDLT
AKEFSLLSVLARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKL
DGPFEQKLLHTIRGMGYVLESRGAE
>PFL_2537 methyl-accepting chemotaxis protein
MVTRNMKLTSRALLSFGAICVLLIGLGGLALWKMGQIHDAALDLQTNWLP
SVRQATKIESGTLRVRLEALHYATENDAQKAASLDKLGTLKASLAQAIKD
YEPLVSSAEEKTTFDQVKRGAQDYLDKLAVLIENSKTNTAQQTSDYINQV
TVPLANTLQSAIEALIAINENGAEHSANQAGQQFDTGLTLTSVIIVLAIV
LTILIATLFTRSIIRPVLSLLATTQKIAEGDLRAQVDVSGQDELTDLQKS
TQAMLDSLKSTIRHIADSSTQLASAAEEMSAITRESNAGIQQQSMETDQA
ATAVNEMTAAVEEVARNAVSASQSTQASERSAGLGKERVEQTIHSIEKLT
GTVEHTRLEMAGLAQQAQDITKVLDVIRAIAEQTNLLALNAAIEAARAGE
QGRGFAVVADEVRALAHRTQLSTQEIEQMIQGIQSGSSKAMLSMQQSSED
ASQTLAIAHEAGAAIGHITQAISEINERNLMIATASEEQAQVARSVDQNL
MSIRDLSLQSSSAASQTSIASSELSSLAVSLNKLVARFSL
>PFL_1902 sensory box-containing diguanylate cyclase, putative
MDEKYRRAVDAAAIFSETDLGGSITYVNDLFCQVSGYSREELIGANHRML
SSGLHPPEFFAELWQTITQGRVWKGEICNRAKDGSLYWVDSTMVPLVDQR
SGQVVRYVSIRFDVSEKRQLLHSLQWRVGHDVLTGLPNRAFLSDLLHQAL
DFSRAQDIPLAVCMLDLDGFKAVNDGYGHACGDLLLVEVAARLRSIIRGE
DVVARLAGDEFVLILRYVRDMLELRAALQRVLATISQPYSIQGKDINVFA
SIGVTLYPTDNHDADTLLRHADQAMYVAKQSGRNRFHLFDVLRDREVMVT
YQTVEQVRQALLAGELRLYFQPKVNMRTGEVVGFEAMLRWQHPQRGMLGA
QEFLQQVEETDLIVEIGEWVMDQVMTRLQGWQQAGLGWPVSLNVAARHFQ
RPDFVERLKDMLDRYPDVLPALLDLEIVESVAIDNIQRVSDCLDACQGFG
VQFSLGDFGTGHSSLSYLKRLRTQTIKIDRLFVRDMLHDADDQALIQALV
GLAQAFGRRVVAEGLESLAHGERLMALGCDVAQGDFIAPPMPAEAVLDWV
RSFEPPRAWRSDELQGEAMSGG
>PFL_0515 lipopolysaccharide core biosynthesis protein, putative
MASWNLDPAYQALAEDFGSLEAVFALQGEHLTRDPLSEVIRVERGGVNYY
VKRYTGAGKNLRRYLGKPRVKFEWQNLKRFAKWGIPTADVVAWGLERRCL
AYSRGAMITRELPRTEDLSVLAERNDPRLQDRRWVDGVSRQLAAYTRVMH
DHRFTHNDLKWRNLLVDDQDRLYLIDCPNGDFWRGFWLKYRITKDLACLD
KVAKYHLSATQRLRFYLQYRQRDHLSAADKERIRHVVRFFEGRE
>PFL_2328 methyl-accepting chemotaxis transducer
MFSNLSISQKLYAGFGVVLLILLLLVLAALRGFDQVSSSVKSTIHSHEVL
NQSDALLRSLINIETGMRGYALTGRDSFLEPLEQGEKAFTDYYARIKSST
ADNPEQQARLERLKALHDQWLREDIQGNLALRRAINAGTQPATAMAEQIS
AGRDKAKMDAMRQLTNELREAEKSLQDARSQAMDNAKASALAILLGGGML
AALLAMLVAWSLSSNLVGRIRQSVEVAEAIAAGHLDNRISTQGRDEVSEL
QQAFAAMQERLRSMISQIKLGAEQLVSASQSISSASLQLSASAQEQSHSA
SSMAATVEELTVSINHVADNAGDAHALSSESGRQSEEGGSVIQDTLGSMR
LIAETVQASATQIGELGQHAEQISSIVSVIKGIAEQTNLLALNAAIEAAR
AGEQGRGFAVVADEVRLLAQRTANSTQEITEMVDKIQLGTREAVSSMDVG
VNQVKSGVEQAQQAGEAIVNIRTSSGNVVRVVDQISLALREQTAASQDVA
RNVERIAQMSQQNSQAVEETTETARSLQQLAQNLEQQVNVFRL
>PFL_0778 methyl-accepting chemotaxis transducer
MSSWFANISVNLKLGLGFGLVLALTTVLALTGWTSLGSLIDRSNWMSDIT
QLNSGLTKLRVTRLQYMLANGDETAAQGVQNTLDDFSAQQKKLLASFQSP
ENIKLLQGLGATISAYQDSLNKMRNAYRSGDAARLAMNQNAERANDLING
INSWVKQLPLSDERFTQFQAITQAKEAFQLARYEVRGYVTTNNPDTEQKA
VTQLNAAIAEMDQLKSHFSSTQRDALQQLETALSGYRSSLQAFKVAFTNA
VEARKEMTDQGADIVSRSDALYQIQLDRRDIESAQARSLQLISTLLALLV
GVLAAVIITRQITRPLQETLAVVERIASGDLTENLRVTRRDELGVLQQGI
VRMGVTLRELISGIRDGVTQIASAAEELSAVTEETSAGVNSQKVETDQVA
TAMHEMTATVQEVARNAEEASQAAAAADGEARQGDKVVAQAIEQIERLAS
EVVRSTDAMTVLQQESDKIGSVMDVIKAVAEQTNLLALNAAIEAARAGEA
GRGFAVVADEVRALAQRTQKSTEEIEELVAGLQNGTQQVATVMNNSRSLT
DSSVELTRKAGASLESITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSII
NVRDVSEQTAAASDETAAASVELARLGGQLQMMVSHFRV
>PFL_4449 sensor histidine kinase
MNWSDLPGRHSLFWKLACLLVAFCLLMIWLSWSWGRYVEQKNLYLSDEAR
ATLGSYAREAEQAWKGGQSAGVDAWIQQIASREKTWIGVIGSDLQSLSSY
PLTPAEAQRLTFLRGADWPVSRHARGLPWLKVPFPEDPSLGSLVIELPQR
FMPGRYRVFWQVITNGVIPGLFTLLLCVGLYRLLVVPLNQLREQANAWRA
EQLNVRLSSETTQRRDELGELGRAFDQMSERLQSTVAVQQQLLRDLSHEL
RTPLSRLRVACDGERDLAALRERLAREVDGMQRLVEDSLQLAWLDTERAP
LPQEQIQVQALWEMLSENACFESGWSAQQLRCELEADCWVRGHLNTLAQA
LENILRNAIRHSPAGARVSLGGQRDGKYWHLWLDDEGPGVAEEDLERIFA
PFTRLDGSRPGDGGFGLGLSIARNAVGRQGGQLWAQNLAQGLRIHVRLLA
A
>PFL_2903 sigma factor regulatory protein, FecR/PupR family
MSEQILSEAEYDAITQAAAQWCMRLHEPDCSDAERLAFQQWHDADPLHAF
EYEAMREIWEVADQLPPSTLTAAPAPAPVKLVPRRTWQQYGVAAAIALCA
LPLAAYSGWELGWVPSSYQRFEAGDSLRSVTLADGSQVQLNLGSTLTYSN
YKDQRRVTLKKGEAFFKVSHDASHPFVVKAANGQVKVTGTQFNVWMYEDQ
VRVTLLQGSVLVSSNTALPGEGFRLEPGMQASYKAGDYQPQISQTYSNDS
SLAWREGKLVLDNLALTDALPLINRYLDTPVQVADANTGKIRVGGIYNTR
EIKSLLTSLPKVLPVYLTRNRDGNPVINSLPQSPPKS
>PFL_1821 conserved hypothetical protein
MDLRRMSGWPVLLGLTLLPSLSMAAGKCERLVVTGSPDAPPYLWRDPQDP
KHLMGASADLLQQVAGELGLKVEVLYAGKRSEALDEVRTGRMDLLADAPL
TLNELESLDYIHPALVQNDYLVWTRKDSTLSYTQPGDLAGHPGAVSEKAR
LTQPFVAMAKEHLQLKRLPNLTQVFQTLLLGEVDYVLAPRYAGMAMAQTL
GMTADLAAFPQPIDKPGLFLALSHNSACNDPWLRGQLAKKMTELPASGLT
ETLLQRNLERWKAQLQQPVSSPKQ
>PFL_2987 response regulator
MPAEHVPKPYTLLAIDDDPQSLIVLSKTLTAEYEVLLAKNSERGLALARS
ASPDLIILDILMPEMDGFQVLSELKSHPATAAIPVIFLTSRSSVEDERLG
LLLGAADYIAKPISPPVVLARVATQLGYRNKPLHDLQAVAGPCAGSDMRD
GFVSALTLQLAGNPQIRLQALLDTLSILLRSSPSRRDPAALRSAACLALM
GLNQPGSRIDQALGHSRLLIEEILAHAEPEDPILNLAWKITHADALLKGP
GELDTCERLSLSARLFALALNYHLSLLQASTEDLHSRHAQAMGQMYRQPG
FEQCIAGDPEPLSAALLSSSQSFFGR
>PFL_1132 CheW domain protein
MSHPYSLDVTREDAQAIDDCWNRIGIHGDKSCPLLVEHIHCRNCSVYSAA
ATRLLDRYSLRQEDREHSVVLEADSDVVTRSLLMFRLGEEWLGLPTRCLL
EVAPQQAIHSLPHQRSRALLGVANVRGALVACLSLTELLGLDPSPAAPAG
GRVMPRMLIIGAAGGPVVVPVDEVHGIHAIDERILNGASASGEQANAKYT
RGVLQWQGRSLRLLDEEQLLAAVTRSLT
>PFL_1041 basic amino acid ABC transporter, periplasmic basic amino acid-binding protein
MKKLPLISGLALSLLACSSLFAAEKTLRLGIEAAYPPFAFKTAEGKIGGF
DYDIGNALCAQMQVKCEWIEGEFDGLIPSLKVKKIDAALSSMTITAERRK
SVDFTHKYYFTSSRLVMKKGAEVDDQYASLKGKTVGVQRSTTTDRYATEV
FEPKGIKVVRYSNNEEIYMDLAAGRLDAIFADSIPLADFLSMPRGAAYAF
VGPELKDPKYVGEGAGIAVRKGNSELVGELNKAIEDIRANGEYQKIQAKY
FKSDIYGD
>PFL_3246 sensor histidine kinase/response regulator
MSPDLDFSERALVLTPHGRDSQLAQMMLKEAGFNSLITPHLPALCEQLEH
GAGLVIIAAEALRGVDLEPLLRHLEQQPAWSDLPIVLLTQHGGPEQNPAS
RFSEPLGNVSFLERPFHPATLISLVSAALRGRRRQYDARDRLIDLSQSEL
RLQRTLETLEQQVEERTAQLRHNEEALRQSQKMEAVGQLTGGIAHDFNNM
LTGIIGSLELLRRRLARGRTEDLDSLIDLGVTSANRAAGLTHRLLAFSRR
QSLDSKPVEMNALVTSMDELLQRSLSESIELDMRLDPQLWVAEADPNQLE
SALLNLVLNARDAMPNGGRLLVETLNQRLAPDFAQAHDNLKPGDYVLLRV
SDNGCGMPEAIINRVFDPFFTTKPIGQGTGLGLSMIYGFSKQSRGHVTLN
STLGRGTEVSLYLPRFVGDLEQAEHPLVQQPPHAQNGETVLIVEDDPAVR
VLVCAVLSELGYAFVEAGDARSAMPILDSAQRIDLLISDVGLPGMNGRQL
AEIGRQIRPELKVLFITGYAEHAAARGGFLEPGMQLITKPFTFDLLTAKV
REMIRD
>PFL_4013 methyl-accepting chemotaxis transducer
MARELARTGLHSSPSASRFISNKRLKNAIGRPLQCKVSDIYRIKDVSMSL
RQLSIQWKITLLAGLCLLGIVSLLVGLSLYRMEHSSELVKASSMEMLNEA
AQARIEAQGEVQALGIRQQFMDAYQYGHGFSRQVLFLREQAEKRFLDAFD
LREDLTRQVKSALQANPDLLGLSLVFEANALDGKDELFGGQSELGSNEKG
RFALYWSQPTPGKLTSMSLPESDMSDTRTGPSGQPANAWFTCPRSTLKPC
VIEPYFYDIDGQKVLMTSIVFPLMVDGKVIASLSVDINLNSLQAISQSAS
KRLYAGQTNVSILSPVGLLAGYSPDASKLSQRLDSVDTTNGAELIRLLAN
STQTQSLHSNRELKVLAPFTPIPGGKAWGVLLDVPEKVLVGPAEALKSEL
DARNNSGTLIELGLGLLAAVVGLLLVWLMARSVTRPILGVAHMLEDIASG
EGDLTRRLAYDKPDELGQLAGWFNRFLDKLQPIIAEVKRSVQDARGTADQ
SSAIATQTSAGMEQQYRQVDQVATASHEMSATAQDVARSAAQAAQAARDA
DQATRQGLNVIDHTTRSIDLLAADMSAAMTQVEGLAANSEQIGSVLEVIR
SIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETRQ
VIEQLQNGTREVVGSMNNSHRQAQGSVEQVGQAVTALRQIGDAVTVISDM
NLQIASAAEQQSAVAEEINSNVATIRDVTESLSEQANESARVSQSLNSLA
NQQQSLMDQFRV
>PFL_4532 YaiC/YhcK/ArdA family protein
MENQRGKGLSFARRIYRPRIIGLGIGGISVFATLYPLALPGWIWALLLFH
GLLWPHLAYQLSTRSAFPYQAERRNLLYDSMLGGFWAATMQFNPLPAVTI
LSMMAMNNVAAGGVRLFIRGALAQGIGVLLSWSLFGASFNTRISPLQIYA
CLPMLTLYPLAVGMVCYRLAIKLSEHKRALSALSRTDSLTGLLNHGSWKD
LLHIKFHKCQQQQIDASIALIDIDHFKAINDTYGHIIGDTVLRHLSNELR
RNLRHDDLAGRYGGDEFCVILPRMDRQQALEVMERLRQVFSQYRHPQVAE
LKVSLSIGLAAFDREFQDPSSWLNAADKALYLAKNSGRNRIASNDDEAHS
RQTQMA
>PFL_0234 glutamine/glutamate ABC transporter, periplasmic glutamine/glutamate-binding protein
MKTAKSSLLLLPLFGLALLAGCDKSNDAPKPAATAASAAPAAGYLDKIKA
RDKLIVGVFTDKPPFGFVDETGRYVGFDTDIGRQFAKDLLGDENKVEFVA
VEPASRIPFLQSDKVDLILANMTVTPERKEAVEFTNPNLKVAVQALVPEG
SAVKSLDDLASRTTIVTTGTTADIWLTQNHPDWKLLKFEKNTESLQALAN
GRGDAYAQDNLILFSWSKQNPGYRVLPQTLGEQAPIAPAVKKGNIELRDW
VNAELAKLGEEKYLLKLYDQYVRKELSDDTKPESVIVEGGKWQG
>PFL_4619 sensor histidine kinase
MPRSLLGRMLLLTLLAVLFAQALSSVIWVSQLRATQLEGLVTSARSLAHS
MTASVSYLRSLPVAYRPLVLDQLRSMGGTRFVVTLNDKPLGMQVLPATPR
KEAVLQAVEQVLRQSLGNDADISVTFVSPDDLRIFNGGLKLDELPRSWAH
YALTLEPVNPPVLVTQIQMAPGEWLYIASLLPEPYTSLEEQGLPAQQVWF
ILLTSGFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVAEGGGSEV
VEVGRAFNSMRERISRYLTERSQLFSAISHDLRTPITRLRLRVELLEDEQ
LQAKFGRDLDELELLVKGALQCVKDTDIHENIEPVDLNQVLDCLVEPYLA
PNGNGRVTQQGRALASYPGKPLALKRCMGNLIDNALKYGQNAHLHIEDDD
SGFVLHVDDEGPGVPEQRLEQVFEPHFRLAGQQQGYGLGLGIARNIAHSH
GGEVSLQNLREGGLRVTLYLPRTFD
>PFL_5125 methyl-accepting chemotaxis transducer
MKFKSIQFSVAALAGAIVLSVVAALVLYALFSGARTQQMVQDRTQAQFEQ
VIEQRLSGLAQTQVSQIQRELEAPLLIAGGLVRVNALMGTQDSQGHAGLS
LSREQLIALIKENVTQNPKILGAYIGWEPGAIDHDDAAYVGTSVVGIDAA
NGRFLPWWFRNEDGSLGLDKLADVNDRTLLSTGVRTSEYYLCSQDSLKPC
AIDPAPYKVGDKVVMLASFIQPILLNGKFQGIVGADLSVNFIQDMLVGAN
QKLYGGAGHMALIGGNGRLVAYTKDSSKFGEKVSDVLSSDALTKLSSLKR
GEVTYDVDQANGTISLYLPFGIGQTDAHWTLMLQLPLSAVMADLDKLQGD
LAEQRKADTFGMAMVGLVIAGLGLLVIWLVGHGIARPLRQMVAMLDDIAQ
GEGDLTRRLTSDRADELGSIAKGFNTFLAKLQAMISQVVTSVQSVSDSSE
HTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQAAQAASH
ADQAASQGMQIVRDTSSAIGALAEEIGRAVGVVQTLAKDSENINAILIAI
RGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATEEIQ
SMIQQLQQGTREVVRVMEDSQHKTDQSVEHAAKAAQALETITQAVSVIND
MNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASAGLTKL
AEQQRRLINQFKV
>PFL_5042 chemotaxis protein CheV
MSVARATSQFSPEKVFMSSNKARADSLSLLLFTLRSGKLMAINLLKVSEI
IPCPPLTKLPESHPHVKGIATLRGNSLSVIDLSRAIGERPLADPDSGCLI
VTDVSRSKQGLHVQAVSKIVHCLTTDIRPPPFGSGGLRSYITGVTQVDGT
LVQVLDIEKVIHGIAPAQIEMAPTELSMEDAEALGNARILVVDDSQVALQ
QSVHTLRNLGLQCHTARSAKEAIDCLLELQGTANEINLIVSDIEMSEMDG
YALTRTLRETPDFAHLYVLLHTSLDSAMNSEKARVAGANAVLTKFSSPEL
TRCLIDAAKTIATQGA
>PFL_3824 sensory box histidine kinase/response regulator
MNLLSARRWADLPLRGKALVVISLPLVILLLSLVLIYSTERQTARAEEDV
RRVLLVQGDIQAVHTLLAEAAASVRGYLLTRREDFLPAYLQARPQIEAAL
QRLDQNVQDPRMRDYLQTITPLIRTKLDGLVALRNGSRDDAATVTAILID
NKQVLDVLREQISAMRVREDALLAERSAAAAATRMRLLFATLLAAGCGLF
GAIVAVLLLSRGIVTRVQQVQGNAQRLALGQPLRPQAPEQDEIGQLGTRL
VEAGQLLAERERALRDNEERLRLIIDGVKDYGIFALDTAGRVTTWNVGAE
RIKGYSEQEIIGRHFSLFYLPEECPQHPDMALREATAHGHYMEEAWRCRK
DGSRFWASVVITAQYDASGALRGFSKITRDITDRRAAEIALGTAREEAES
ASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDSNAGQRPQVGHILRAGQ
HLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGIT
LAPLPELAADSGVIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEAS
RLRLSVLDTGAGITAERLERLFKPFERLDADPRVEGTGLGLALSRSLLEM
MDGSLGVQSTPGSGSCFTLELPFVRLAAAAAVAPCNAPALNVPAPQPASR
YQGKVLCIEDNLQSLALIETLLQRRPGIRLLSSMQGQMGLDLARQHAPQM
ILLDVSLPDLPGLEVLQRLRASSATADTPILMITADASEPTRRALLDAGA
TAILTKPIHIPVFFAHLDACLPELP
>PFL_3638 DNA-binding response regulator, LuxR family
MKKIRVALADDHPLVLAAVSDLLKKTRQYEVVAAVTTPSALVQQLSDDPR
IDVVITDYFMEGDPTFGDGIRLVTYLIRHFPRVQVLVLTMMSNPMIVAAL
YDIGVRSVLPKRHDMSELLSALENVRQGRIHHPPSLVQNELNSSPLRSMA
DGLSSLTPKEYEVLRHFVRGESMMQIAANLKRSVKTVSAQKISAIRKLNL
DSDQALVAFCLESGEFQ
>PFL_3611 sigma factor regulatory protein, FecR/PupR family
MWQAAMDWLLQCHSAPDDALLQQAHARWLAADERHAVAWRKAEKVWLLSG
GLAPLEPPVPQPLPTPLRARRNRPRRALKALALAACLLLLAGPTPPTAHT
SPAGEHRQVLLSDGSRIELGSDSAIRVDFEPGTRAVTLLRGQAFFEVSHD
ASRPFTVQAADVKVRVIGTAFDVDLSRTAVVVAVQSGAVQVRDGRGELAV
PALGPGDSLRLGLDQGPPQRGRLLPGQVAPWRQWQLLVNDRPLSEVVEAL
QDYYPGVLLLTDPALGERRITASLNLRSPVSALQLAIAPLGGHLRQWGPY
LTLIRKEPQVPAKQ
>PFL_3193 sensor histidine kinase/response regulator
MRLKSYLHQINPLFSSPEAARRLLRVVALIFLVGLFGAVYNFLRSSLHNE
LSQRQSYMSSAIAEAQAFFTSRSALLESLSLAAVYDPGEHISPPGASGAS
QEETYLQLGGPQGNQWGIWLTLRMRNYLQNKQLNLLYIPGTRDLQVQRLF
STRPQTSDLPGGLLDKLIALKPEQIPVGEELWLMDNSAAGAHLYIFTRLD
ERFAHSGWLGLEMDGKSVSAALSDQSAGDFMMFNSQGGLIFSSAPSARLS
ADVRHVQGGSFFGFLGGRWWPDHLVIRKQLGATDWQLVYSFDLQNLLKSL
WPQLLAALLISLTGMALIGLLTHWVEVRLIAPALHRIQALVESEAFSRDV
IQIAPVALCVLRRSDGRVVLENTLSQQWLGNGSERDQLCSGWIEQAFDPA
RPNSSDYFETADGRHLYLSSAPTRYNGEDVLFCAFSDISARKQIEAALEE
AKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQLDNQQKDYL
QAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAA
AAQAKGLQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDTGRIVL
RVRTESRDGERSNILWQVSDTGRGIAQDDQTLIFEPFYQTEGNTNVIAGT
GLGLPICQRLTQLMNGNIRMVSELGLGSSFTLTLPLEASAVQGDTPLISP
LLPEMVYVVSPVRELAESVAGWLRRWGARAQFSLPSPSDRARGNVLIELH
PGSVEQRLEPDWQGPLVLASGDGHNEPRIDGGSWQINTNNLRAIHQAVSQ
AQGVWVAQSEDHSDHRELKKLSLHVLVAEDNVINQLILKDQLEELGCSVE
LASNGEEALCIWKAGRFNVVLTDVNMPKLNGYELAQELRRQGCSIPIIGA
TANAMRGEEELCLAAGMNHCLVKPFALRALFNYLAPYERAPHEVL
>PFL_4066 transcriptional regulator-related protein
MFDNLGHGPNHLLNALPAAVQERLLPHLKPVALSLGQVLYESGDIPRHVY
FPTDAVVSLLYLMENGASAEIAVVGNEGLVGVALVMGGESTTSRAIVQSA
GHALRLPGQRLKDEFNRHGEMLLLMLRYTQSLITQMAQTAVCNRHHSIDQ
QLCRWLLLSLDRLPGNQLVMTQELIANMLGVRREGVTEAAGKLQRQGIIE
YSRGRINVLDRPRLEQHSCECYGVVRKETERLLPYLPGSKRADPD
>PFL_5426 sensor histidine kinase/response regulator
MHYLLMLLLSLPMLAGAAEFDEFTQRLPLGRVMQVLEDAGGEATIADVSS
GPLAEQFRPHDKDTLNAGYSRSAFWLKIDLDYRPANPSAQRSWLLELAYP
PLDHLELYVPDESGGYRLAGRTGDALPFDSREIRQNNYLFNLNFSPHEHK
TVYLRLASEGSIQAPVSLWSSSAYLEAQPVRLYVLGLIYGVLLGMLVYNL
FIYLSVRDTSYLYYIVYIASFGLYQLSVNGAAVEYFWPDSPWWANAATPF
FIGSAGLFGSQFARSFLQTSRHSPWVDRVLLALMAFGALVMALSLMTSYA
LALRLATTLALVFTVVIYVAGIVAWCRGLRVARYFIIAWSAFLFGGVINT
LMVLGYLPNVFLTMYASQIGSAIEVALLSLALADRINAMREQQAQTLLEA
GQKLEVLNQQLAHSNRLKDEFLATLTHELRTPMNGVIGSLELMQTLELDP
ELEQYQQTAAGSARDMMRMVNGILTLTELQAGKLSAQRQPFSLRSLLTTL
QTQYGASAAAKSLAFQIDLSAGLPDRLQGDRCKLSHCLECLLDNAIKFTP
SGSVVLRVLTRSVSAQRVSLSFEVIDSGIGFVNLDEATLYQRFFQLDGSM
TREYGGLGIGLAICRQLVELLGGQLTHESTPGRGSCFRLLVEFDAQEPAP
RSPVAVARRLPRDCTVLLVDDNDVNQLVVRGMLLKLGYQVRTAGSPTDAL
QLLGRELVSAVLIDGEMSTAQLGAFRLQAQALPGYSQLPILLACVPGKEG
CPAGAGSDYLAKPVKFEALQTALSRYVLSVEQGESADI
>PFL_2566 sigma-54 dependent transcriptional regulator
MSLIATDLVPPPMSALVSYLEHDQQPTIVLDTDYNIIAANTAYQRQFGVA
GKPHVGAKCYRVSHQFAVPCDQAGEHCPMRKAHDSRVPERMLHIHHTPRG
PEHVDVELRPIIGQDGTVVAYVERLSSVAVASVQPQQKGLVGRSPAFNEA
LGALQRAAPAPIPVLLQGESGTGKELFARALHDGSPRASGPLVVVDCTGL
TESLLESELFGYEKGAFTGALQRKIGLAEAAHGGTLFLDEIGEVPLAMQV
KLLRLIESGSFRPVGSLRTVHSDFRLVAATHKPLKEMVAAGTFRQDLYYR
ISAFPIRLPALRERSDDLPLLIDSLLRRLDPGVVPRVDPQALAQLSLYTY
PGNIRELRNILERARLFSDDGVIRLADLPPELRSTPAPAPPGRRRGNKDL
EQLAHALEVFEGSRSELARALGLSERTLYRRLKALGL
>PFL_4076 conserved hypothetical protein
MSNRALRILIADDQHFRRMQIERALNQLNYYRVAPVHRLEELLTLVEYSC
ESFDLLIINANLAVRSDFDLLAFCLDHPHIEQALIYGSQHLAATSGSRRC
KVHVSPAEWPDSAAIKRLMLWVDPPLPDAAGLSRQRLAQLHGHWGSPN
>PFL_6078 ppkA-related protein
MASVYLATQRSLERKVALKVMAAALAADPSFCERFLREGKTLARLSHPHT
VTIHDIGNVGELYYMAMEYLPNGTLKERIAAGLTPEQGLTYIRQIASALG
YAHAQGLVHRDVKPANILFRADGTAVLSDFGIAKSLDDRTQFTQAGFAVG
TPSYMSPEQARGQDIDGRADLYALGVVLYEILVGELPYNGTDALSTALAH
LTEPLPELPLHHGRYQHILRKLLAKDPAERYPDAAALLAALDNLPAATAE
VEATLIQPLPLPPQAASQPVPQGNDLAGLTPVSIEIPQQAPRPAPRREPP
EEPPAPPRTANLPPAGSGPSEQRRGPVLALAGVAVAVALAVAGAGYWWLS
GDSPAPEPKTASTAGTTPAVVAPPASQPVAADVDGGQRPLLMPGKKTLFQ
RVLSKPGASFSSEPGAAPGQAVPAFSVLYVYQRKNLDGRSWLRLGAASDG
RSAGWLPAEQVSDWKQSLVLKFTERSGRAPVMFVRQASELERLLADPAAA
KNLLLKAQKNPQDEQQVLALEPNASAVPQDQFYLLPIFDSKESFDDNGQP
VQLLNVASIDPGNSPQSISDSSGKRLPANAPPAAGDAFRTAVVLVVDTSV
SMQPYIDQVRDVVHELQSKIAQRGELDSVSFGLVGFRNNTSKTPGLEYVT
KTLVTLDQGRDPQRFQELVSQVKATSVSSHSFNEDAFAGVMQAVEGMDWK
GYGGRLILLVSDAGALRKNDPYSRTQMNEAEVRQAALGKQIKIYALHLRT
DAGKKNHAQAETQYRVLTADANPKIGDLYIPVPGGDVGKFGERVDEIGTV
FADLVHQVRSNQSQEVPVLAAAPSIAQKSAAIGYAMHMDFLGRKSASQAP
QLVSAWTADRDLTNPALPAFQVCVMLTKLQLNDLQQSLKLIVDAARKTQT
SPKDFFQEIASASAYMSRDPSALRKGGNLADGGVLGEYLEGLPYRSKSLS
MTQDLWLSLSVAEQEDFIDELDSKIRLYETFHNDLANWVRFGDAEPGDAL
YRVPLSTLP
>PFL_0280 EAL domain protein
MTDFPTSLTSPGNRCEGCQQSQPLGFDFSFAYQPIVDLRDHSVFAHEALV
RGVNGEGAGTVLGQVNDSNRYRFDQRCRTQAITLAAQLGMQSHLSINFMP
NAVYRPELCIRSTLEAARAQRFPLDRLIFETLESQHVDNYRHLTNILREY
REFGFKTAIDDFGSGYSGLNLLADFQPDLIKLDMALVRDVDQDRVRQAII
RAIVTMCAELGVTVIAEGIESAGERDFLSDCGIYLMQGYWFAKPAFKALA
EVPAAAWNS
>PFL_1372 sigma factor regulatory protein, FecR/PupR family
MTRFSGTHNDLDSEQIDAEAASWFARNRNDPDRATRKAFDAWVSEPAHAR
AYAEFEELWVDLAQLQQLSRPIPLPRRKPAPWRPALAAAAAVLCAVLAVN
LGTPQGPYIQQVAAQEKGARAFKLPDGSTLYVNANTQVKVDFSAQQRDIY
LQQGQLYLEVAADKERPLWVHSGAAKVRVVGTAFDVRRGQRQLVVSVAHG
QVAFSPDGKPGELTLLGARQQATYDLHKGTLRQQTLDSDEVADWRSGHLA
FRNRDLASLVDELNLYRRQPVQLAEGSLGAYKVSGNLDVNDPDALIKALP
VLIPVKAVPLADGQLRLEAR
>PFL_0229 sigma-54-binding protein
MSAHTPFGQPLLTFPDAEKSPLSIRAKALVFVDPRSRQLREELEQLAPRS
VSVLIRGETGTGKELLARHIHRASDRSGLFVSVNCGAISPTYADAELFGY
AAGSFSGSASSRAGWFGSANGGTLYLDEIGDLPLPIQTKLLAALENHEVT
RVGAQQPSPVDVRLVAATSIDLAQAVAAGKFHERLYRYLSEGQLELPALR
ERVGDIESLAEYFLGIYSQRLDLPVPLISEAAQQALNRHSWPGNTRELEN
VIHFALLVSSGEEILPEHLNLPPTPSPLEQIQQLLQQIAEIGSAVERQAL
HQLLQRTALT
>PFL_1781 protein-tyrosine-phosphatase
MRVLFVCLGNICRSPTAEGVLRRKLHEAGLGDQVQVASAGTSDWHVGKAP
DKRSQQAALRRGYDLSAQRAQQVGSADVAAYDLIFAMDQSNLRNLKALQP
ARGKAELDLFLRRYEAALDEVPDPYYDGEQGFEQVLDLIEDACDRLVVEL
KGRL
>PFL_1669 chemotaxis protein CheZ
MEHNESSLGDFESTLKKHALELVESLEKGRFGEAVQLIHELNQTRDRGLY
QEVGKLTRELHSAIVNFQIDPHMPQAEEVSQITDATERLSYVVRLTEAAA
NRTMDLVESSTPLVNGLSTEAQALSADWGRFMRREVGAEEFRELARRVDS
FLTRSEQETRTVSGHLNDILLAQDYQDLTGQVIKRVTQLVTEVESNLLKL
VLMASQVDRFAGIEHDRESILAEKDPQKHLAKGEGPQIHADKREDVMSGQ
DDVDDLLSSLGF
>PFL_4475 DNA-binding response regulator
MEQEAWQVLIVEDDQRLAELTREYLESNGLQVAIEGNGARAAARIIAEQP
DLVILDLMLPGEDGLSICRKVRDRYDGVILMLTARTDDMDQIMGLDLGAD
DYVCKPVRPRLLLARIQALLRRSEAPEPAVEKTRRLQFGPLVVDNALREA
WLSDAGIELTSAEFDLLWLLVANAGRILSREEIFTALRGIGYDGQDRSID
VRISRIRPKIGDDPEHPRLIKTIRSKGYLFVPEAAADMRS
>PFL_0630 sensor histidine kinase
MRLSDFIVQHVDRIVDEWEQFARSLAQDSLTRTDLRDHARSILLAAARDM
CTAQSPGEQRAKAKGEGPEKTPSLDAAAASHGELRHHVGFDLVQMTSEFR
HLRACVIRLWVASLQTPDLAYLQDMIRFNEAIDEALAESTAAYAEQVSRS
RDIFLAILGHDLRAPLQAVSMSTEMLARKVALDGDAQAFVSRIKSGTRHM
GAMVSDLLEFVRSRLGSSLPIEPAPMDLASAAKAAMDEACAGQPDCTPLM
SFEGDSHGIWDRGRIEQMLQNLIGNALQHGNNRRTVTVTITGGAEQVLLT
VHNYGTPIPPEALGTLFDPLVRSVDEELGNPSTSLGLGLFIVKEVVVAHQ
GSIEVSSNASDGTTFTVVLPRVSRASA
>PFL_4287 methyl-accepting chemotaxis transducer
MGAWLSNISLKYKFWAVNAVAFVTTLLLVLYAVQLEQQARSQTAQAAAQA
EAKLLGAWPEGQALPSAEHLLYFSRGQTPSLNEQTLSELNGANGWVELNP
MPLFGENPLLGADVIQRADGQQVAVLAYAPSLAQVFSDRFTNYAVAVFIL
MFAMLCASQLLIRFLLSQLNTLKDVMLHVEKTGDLSARVPLSCKDEVGQM
ASAFNAMQAGYQRVVNTVANTARQLDQGAARLASSMNDVRHGMLGQQSET
DQAATAINEMSATVYHIAQHAGATRDLSQTADTLAGTGHEVVGRVQKSIA
GLSNGVQQTAEMIQKLAEDSQKINGVVNVIHSIAEQTNLLALNAAIEAAR
AGEMGRGFAVVADEVRNLAKRVQTSTDEITSMVSALQAGTRDAVDFMQES
SFKADDCVQQAQEAGAALAEITGAVAQMRESNTQIAVAAEQQSQVAEEMN
RAVVSIRDVTENTVQQTVASATTSSELATLAGELSKAIGQLKL
>PFL_2226 sensory box histidine kinase/response regulator
MARPSDEQQRALAGLLGLGNHSARKSHYPELAARLEDLETERNRYKWLFE
NAVHGIFQASLQAGMRAANPALARMLGYQDPQEVLFSLADLAGNLFVGGA
GELAAIGEQLQNQRSLLGYETQLRRKDGSSIDVLMNLLLKPDQDGLVEGF
VADITERKLAQQHLEQLNDQLEQRVAARTDELLDANRNLQQQIARRERIE
RDLREARDAAEAANRSKDKYLAAASHDLLQPLNAARLLISTLRERSLPAP
EQLLVERTHQALEGAEDLLTDLLDISRLDQAAVKPDLATYRLDEMLAPLV
SEFQSVAEAAGLGLRVRFGDFALFTDLRLMTRILRNFLSNACRYTERGSI
LLAARRRGDQLRLEVWDTGRGIAADRLESIFLEFNQLDVGRAADRKGVGL
GLAIVERIAKILGYRVQVASRPGHGSRFSIEVPLAAQVPLPLSQQAPQPG
TGNPLPGRRLLVLDNELSILESMAALLGQWGCEVLTATDQAAALEVLQGR
APELILADFHLDHGVTGCQVVRRLREHFQQPLPAVIITADRSDQCRRALQ
QLGAPLLNKPVKPGKLRAVLSQLLG
>PFL_3825 response regulator
MTADLRILIIDDQRPNLDLMEQLLAREGLHNVLSSTQPLRSLELFNSFEP
DLVILDLHMPEFDGFAVLEQLNRRIPANDYLPILVLTADATRDTRLRALA
LGARDFISKPLDALETLLRIWNLLETRALYKTLRTLVPPERIELLRPPRT
>PFL_0190 sensory box-containing diguanylate cyclase, putative
MSVSYRNGLRAALLYLLLSLVWLQFSGYLLSSFFDEFSDRAHWQLVGGYA
WAVVSAVLIFFARARLLRVLGADRWLRHQQKDRERLRQAAAVFDCTREGV
LVSDTQGQIVHVNRAFIEITGYQREEVLGRQPSLFKSGHHSAQFYQSMFD
SLQKTDEWSGEIWNRRKSGEIYPQWQTIRAIRDEQGELTHYVAVFSDISA
IKDSEHELAHLAHHDPLTDLPNRLLFTDRAEQALASAQIHKRGCAMLMID
LDHFKMINDSLGHNVGDQLLKAVAERLGGMFGPGITLARLGGDEFAVLAE
SCPQLVQAAALAQRIIDGLKEPFQLGEQQVVINASIGISLFPSDALSASQ
LLRNADAALFKAKSAGRNGYALYTEELTAHAQQRVEIAFELRRALDQQEL
RVYYQPVHDLKTSRLVGVEALVRWEHPERGLVSPAEFIPIAERTGMIAEI
DAWVMQQACRQMCQWQADGVVLSFIAVNVSTRLFARSELYQQVAQVLHET
GLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGYSSLL
RLKRLPVQKLKIDQGFVAGLPFDEDDAAISRVIIALAQSMGMQVHAEGIE
QVEQARFLLEHACDLGQGYWFGRPMPAAQLVWSNAPQIR
>PFL_3636 response regulator/EAL domain protein
MLKPLRVLVLDDHPIHCLQARHLLQAAGFGRVDSALDARQALAMLHRQVY
DLVLVDLHMPEMDGVQFIHALTGVDQVPILAIVSSCSRRLMNSVSLMAKE
KGLAVLGTFPKPLEAIHVEQISAIIGNSQDPVLAARPEHEAVFDRQVLER
AIERRELKARFQPRRSLSTGRIVGAEALVRWNSPSFGLLMPDSFLASISR
CQLDHALLLLMLDDALQAQQHWQRLGHRLSVSVNLPTGLLDDPGLPDQLQ
QITLASGLATSDICFELLETERPLSPGQYHMGASRLRLKGFGLAQDDFGM
GYSSMYSLISTPFTEMKIDRHFVHGAAADDARAAALVAAVQLGRQLGLEV
VAEGVESARDLEFLRQIGCDSAQGYLISAALELDAFTQLLGCTVTPPFSS
PTRPASSLPCQTSRYAASRKTSDD
>PFL_4450 DNA-binding response regulator
MTPVSVEPPRILTIEDDPVLGAYVREQLEHCGFAVTWCQNGPEGLGIARR
RPFDVVLLDILLPGMDGLEVLTHFRQSHSTPVLLMSALGAEADRISGFRL
GADDYLPKPFSMAELRVRIEAILRRVALDRRPMPPVPVSLAQSLRFDDER
SDVFFAEQWAGLTRSEYRLLDTLHRNGDEVLSKAFLYQHVLQRGYAAHDR
SLDMHVSQIRRKLKALGYSERELRTVWGKGYVLSALDELV
>PFL_0188 sensory box-containing diguanylate cyclase, putative
MVNKNPHTPSALPQWPEAAQTLMALMHAQGEVARLTEREQLFSSLLVSVN
AVLWAFDWDSRQVLYVSPAYERIFGRPAGLLLADCNQWRDSIYPDDLEYA
ERSLAQVLEKGAVEDREYRIIDAQGQVRWLSDKCFINRNAEPGQRLIVVG
IAEDITEKKQLETELQRLATTDVLTQSSNRRHFFECANREFEQARLQGSS
LAFLLLDIDDFKVINDTYGHPEGDIVLQRIAESGRAALRRGDLFGRIGGE
EFAAVFPGCTADMARQVAERLQREIQRQNFSHQGQTFTITVSQGLTGLLA
EDESLDNLFARADSAMYEAKRQGKNRIITG
>PFL_5262 cyclic nucleotide-binding domain protein
MYLMGEQPAYADALINRLQSIPPQLLDGLAPSGPTLELGPIAELSSVLPG
DQLFLLASGVIQASVEERPLFYLHEGDLVGLRRGIELPQWQLHCDTPLQL
IPYLRTEVFRHIQADVQRSELLVQYLIGQTALLSDAIARLKPPELRSSNG
FKRVEAGERLITQGDEADHVFVILEGHAQAFVDGHKVGDVPKDEIFGAMA
VFTGEKRSASVIASEPSTIMLIPKDQFLSLTQSNPRIAHSLIESMARRID
LLNKEVTRLMTLNNPN
>PFL_2637 transcriptional regulatory protein RstA, putative
MENLGLGKVLLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTALAAFLEFK
PKLVVLDLMLPGQSGLHVCREIRAVADTPIVILTAKEDDLDHILGLESGA
DDYVIKPIKPAVLLARLRALQRRQVPETTTLRGALAFGVLSIDRNSREVR
LAGEPVELTTMEFELLWLLASAPGKTLSRDDILNRMRGIEFDGLNRSVDV
YISKLRGKLKDNPREPVCIKTVWGKGYLFNPFAWEV
>PFL_4630 methyl-accepting chemotaxis transducer
MLSIRPFARSPPMFDSLSIRLKIVLLSGLCLLGVVALIVGMNLYQSQQNN
QLVNTSSTRMLTAGVEELLQAKAADQAVRVQKTFGESNLVITALADQVRD
LRDMASKRGLEAAALREELNHSLKTAFERNPKVLGIWLAYEPNALDGKDS
EFLNDAARASNERGRFATYWSRSGGQQLNTVMVEDDLTKTTLNLSGTPYN
VWYTCPRDSRRTCLLDPYADTIGEDKKQVLMTTISQPLLVDGKVIGVIGV
DIALDSLQAAAGESQRFLFNGAGHMMIVAGSGLLAAVGADASQVGKNINE
TLGAQGKDILALLAGNQNKVLQQGELIRAVYPFSPIADAKPWGVTIDLPQ
QVLLADSVKLQGLLDEAQTSGTVKTVLVAVGAGLLGLLLIWLSASGVTRP
INSVAQMLKAIASGDGDLTQRLDYSKKDELGELVGWFNRFLDKLQPTIAQ
IKQSITEARGTADQSSEIARQTSEGMQVQFREIDQVATASNEMSATAHDV
ANSASNAAQAARGADQSAKEGMTIIERSTRDISLLADEVSKAVGEVEALA
VSSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRN
LAKRTQDSVEEIRVVIERIQSGTRDVVTTMHASQSQAQNNAGQIQQAVQA
LGKISDAVTVISDMNLQIASAAEQQSAVAEEVNRNVSAIRTVTETLTEQA
SESAQVSSQLNALATQQMKLMDQFRV
>PFL_0201 heavy metal sensor histidine kinase
MKRSSSIAWRLALAFAAVCALVLSVIGVFLYRSLAGEIAYRDDLALLGRL
EQVRALLQDSDSLDALQARPRLYQNMLGNQESLLLVLRADGSTVIDINPR
RQPLPALDPIALQQAPQRTDVRLWPGPDDVPVALLAGQARGPKGEALTVV
AGKVLSEREQMLASYRLRLYLAVGLGALLAFALGLLLLRRGLQPLRQLSE
AARQIDLRSLDRRLHTNGIPAEFHEPVQALNAMLARLEESFERLSQFSAD
LAHEIRTPLHNLLGSNGLALNQPRSAAEYQEVLASNMEEFERLGRMAENL
LFLARAEQADAVLDLQVLSLGGVGAQLCDYFEALADDRQLRLENGFSGEL
RADQQLLQRALGNLLANAVRHADAGSLIRLRRHDEAGWCWLQVHNQGPAI
APEHLPRLFDRFYRVDPSRAEPGDSGGLGLAIVHSIMLLHGGQVRVTSDE
QATVFELGFPLL
>PFL_1106 response regulator/EAL domain protein
MHSLKVLILEDNSFQLMALHQMLNANGVFNVLTAESVEAARRSLDSKGPV
DIAICDLYLEQADGLELIRDLARQERARALIILSDAEEDVLEGAAGMARE
LGLKVLGCLPKPASVTVIGDLLTAYQQHSRQGAPAPDQALLRDLLGLEPF
SLDSVTQEEGLAAILGHGVAHFQPVIQPHGELQGVEALARWQHPERGLLM
PGEFLPLIEFAGLQEIFTWHMLEQALELAAGVKLVMGHSLPVAVNIPIGI
LERPLFPRQLEALLRRFEVPARLLTLEIIDTTRLQTDTAHVEALLRLRMI
GCKLSIGDFGIGGTSLQRLLELPFTELKIPPVFVAGMAADERKVALVGGA
MNMARRMSLGVVVAGIESEADYKAAKALGAAHLQGCFLAGPMSAAQMRQW
LAQALDRGAEGAGAEGLCA
>PFL_3823 DNA-binding response regulator, LuxR family
MTAVIRLVLADDHEVTRTGFIALLAGNPEFEVVGQARDGEQALALCEQLR
PDLAILDIRMPLLNGLGAARLLQQRQPEVKVVIFTMDDSPDHLEAAMAAG
AVGYLLKDASREEVLDALQRVARGEEALNSAVSARLLRRMSERGNGQAPQ
AQALTARERQVLGLVAGGFSNREIGEKLGITTGTAKAHVERVIGKLGAAD
RTQAAVRGMALGLVAQPAGQWP
>PFL_2979 conserved hypothetical protein
MVWGPSVSGAESRSFDLYIAEAPPLSMLEQTGLHGIVGDATLEAATRAGY
TLHFIEVPWARAQQSVRKGVDKLIIPLSRTPEREADYTWIAPIMTMDRAF
FSLHTRVETLQQARETFARIAVGRGSAQEQKLRAEGFGDNQIYPFEIGEN
PAQLLLMGRVDAWFNGIPETQSIWRKVSTQPLQVSPVFMSTDLYLACSRN
CNATLVRKLRAAVEGLRKDGTLERMRKSYLDAP
>PFL_4192 periplasmic binding protein
MSLPLRSALRMLLLALATLWVCPASSAQLVRVAAAHFPPYTVRPETGADT
GLLPQLVEALNQSQSDYQFVLVPTSIPRRFRDFEQGRVDLAIFENPAWGW
QNITHTSVDMGLEDAEIFVAQRQGGRQQDYFANLKGKRLALFSGYHYAFA
QFNADPKFLADTYNATLTYSHDSNLLMVLRGRADIALVTRSYLSDFLARN
AESTEQLLVSERIDQVYHHYALIRPKAPITAEDFSGLLQKLRDNGQMHKI
FDPYRIVVMSVPHA
>PFL_2459 response regulator
MIPLLICDDSSMARKQVLRTLPSEWRVSVTQACNGREGLEALRRGLGKVA
LLDLTMPVMDGYQVLSAVQEEGIEAQIIVISGDIQEEAVRRTRELGARAF
LKKPFDPQQLRALLNELQLLDSTDAKPLAAPSPAPVVTFRDAFRETVNVS
MGYAAALIAKVLDVFVHLPIPHVNVLEAGELQMLLADANRARQLTAICQS
YIGSGIAGEALLMFYDSEVADIAQLIEQGTDPYQEMEVLIDLSSVLIGAC
LSSIADQLDVFFSVGHPQVLGEHTTIDELIVLNQQRWKKTQAVEISYSLE
EQNIHFDLLLLFTEGSMALLEQKLAYLMS
>PFL_2635 universal stress protein family
MQSIRSILVVIDPTPGESLALKRAKLIAGVTQAHLHLLVCDRKHEHSALL
SVLKSSLTGEGYSVTTEQAWNESLHETIIDVQQAEGCGLVIKQHLPDAPL
KKALLTPADWKLLRYCPTPVLLVKTATPWVGGVVMAAIDVGNMDGEHRAL
HASIVDHGFDIASLAKAQLHVISAHPSPMLSAADPVFQLKETIEARYREQ
CKAFQAEFDIDDAHLHIEEGPADVLIPHLAHKLGAVLTIIGTVARTGISG
ALIGNTAEVVLDSLDSDVLVLKPADIMDHLEELAAKA
>PFL_3355 methyl-accepting chemotaxis protein
MRRRLNGMDACRPFSLESRPMSLRNLNIAPRAFLGFAFIALLVVVLGVFA
VNRMAVIREASMDMESNQLPSVGFLGNLTENVLRLRILSFRVLVNREPAG
LAEAQTRIGVLVDNARKAQASYAALPAGPQEAALYKTFATTLDNYLQAQN
EMLELSRQNKLDEMRSLINSRIKEGTDQMGEQLNQLIAINAADARSASKA
AGEHYSSAIAGIVAVAVLAALLTIVLALLLTRSIVTPLNKALNAAQVIAG
GNLRQAIEVDGKDEPARLLQALAEMQASLRRTIEQIAGSATQLASASEEL
SAVTEEASRGLQQQNNEIEQAATAVNEMTAAVEEVARNAVSTSEASRQST
QAAREGRDRVVETVDAIQTMTHDVQSTSVMIEGLATQGRDIGKVLDVIRA
IAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKM
VAGIQNGTGDAVESMQQSNQRTQSTLELARAAGVALEQIAESINQINERN
LVIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLAV
DLNALVARFVI
>PFL_2218 periplasmic binding protein, putative
MGRFALFLAGLLLCCATAQAEVRNYDTMIASGELKVAVYQDFAPYSFEDQ
GQPRGVDVELAQALAEALGVRLQLIWAPPGEKLDDDLRDYIWRGSPLRHQ
QLADLMMRVPYDHDYAQKRNELGELANDHVVMFGPYQEERWQVAFDRRRL
DSVASVAVFQEHPIGVEVDSVPSFYLTSVFNGMLSAKTHHYPSVQQAFGA
LRAGQVDAVMAMRGEIDWQLHQAADPQLALAENAYPNMGKQVWEIGMAVH
ESNRQLAYAVEEALEGLIRDGRLQALYARYGLRYEVPQMYQ
>PFL_1643 anti-sigma factor antagonist, putative
MSVVTEISPDGQKLTISIRGRFDFGRHQEFRESYERLNRTPESIVVDLKE
ATYLDSSALGMLLLLRDHAGGDNADVRVINSNSDVRKILAISNFDKLFDI
S
>PFL_4238 DNA-binding response regulator, LuxR family
MGSVLIIDDHPVVRMAIRILLEHEGYSIVGETDNGVDALQMVRDCEPDLV
ILDICIPKLDGLELLERLGNMPRRSRILVLTAQSAALFANRCMRAGACGY
VCKQEDMSELLSAIKAICSGYNYFPSLALQVNRNTLGSPLELAQFNSLND
RELMVLQLFAMGQTNKEIAAGMFLSNKTVSTYKKRIMQKLATTSMSELVD
MAKRNALI
>PFL_0339 conserved hypothetical protein
MPAILQGPALLSRFQALDRFLLEHQALWRPRPFNHLQLPWETAHPELAQW
LRQRSLEDAEAAHNHPEQLQAPAPFTPLAEQARALGAVGELPIKALPAPH
PRLNVDVPGRKWQQIEAFAACLQFDRTPTHWLDWCSGKGHLGRRLLQPEQ
QLTCLEYDPALIESGEQLSRHHGLPARHLQQDVLADDTALRLHAEHSPVA
LHACGDLHVRLIQLASQQGCPQLAIAPCCYNRTRASHYQGLSTAAQASPL
DLSLEDLALPMSETVTAGARVRRQRDTSMARRLAFDLLQRQVRGLDEYLP
TPSLPSHWLDKPFADYCRDLAALKDLSTVDCQDWAALEAAGWQRLAQVRN
LELLRGLFRRPLELWLVLDRGLFLQEQGYAVRLGTFCEAPLTPRNLLLLA
ERP
>PFL_4533 methyl-accepting chemotaxis transducer/sensory box protein
MLFNRHNKTTDSLQQTIAEQSRLLEAIDRSMAVIEFDLQGNVLRANANFL
QTLGYREDQVTGQPHRLFCTPEYVRSSDYQQLWNRLRSGQFESGTFERVA
SNGQSLWLEASYNPIRDASGAVYKVVKYALDVTARVQEEVEARNKLDAID
RAMAVIEFNLDGSIIGANSNFLSRMGYSLAEIKGKHHRMFCKPELINSSA
YQDFWNRLNRGEFFNGQFERIDRHGRTLWLEANYNPVYDASGRLCKVVKY
AADVTQQVEKHEQDAQSASQAYHISVQTRKVAEQGTGVIQQAASEMRQIA
ENIEGSSSLIARLGERSEQITAIVNTIRAIADQTNLLALNAAIEAARAGD
QGRGFAVVADEVRQLAARTSGSTAEISSMIDMIQNETQQAIKSMDGTRER
AAKGVQLADQAGTVILQIRDGASEAVEAVSMFANERGAP
>PFL_1442 sensor histidine kinase
MHKPSSLRWRLLWNLALLLVVLMLASGLSAYWNGREAADTAYDRTLLASA
RTIAAGLSQRDGSLSANVPYVALDTFAYDSAGRIYYQVNDIHQTLISGYE
NLPGPPPGTPRTDDYPALARFYDARYQGQNVRVVSLLKAVSEPNMNGMAE
IRVAETDEARVAMARSLMADTLLRLGMLAIGALVLVWFAVSAALRPLERL
RGAVEERQPDDLRPLPLVSVQRELWPLVRALNHFTERLRGQFERQAQFIA
EAAHELRTPLAALKARLELGLRASEPDTWRATLESAAQGTDRLTHLANQL
LSLARVENGARAIAEGGAQLLDLSQLARELGMAMAPLAHARGVALALEAD
EPVWLRGEPTLLNELLSNLVDNALAHTPPGGNVVLRVSPPGVLEVEDDGP
GIPLEDRDRVFERFYRRNQQGAGSGLGLAIVGEICRAHLAQISLHDGEPS
GLKVRVSFTAG
>PFL_3921 sensor histidine kinase/response regulator
MLIPVTCHRGHCVQRLSHHCCPGPLMPHPNAFLEKLASSSSRLNKSLLVL
GALVLLLLGISYVGVTRMIEERRETLQFHFARLMENVHEQEVFLQDIARE
SAKGERLPNAMLPPYSQKPLPDEGPNIYEGRGLPFSLPYSLKINTDRIAP
SQYPKIFALGTHLAAYYSAFWSASHYQSPQVVLINGPDNFDLAVPSVGRL
RGTGQLPMQTGHLVDVMTQVNKRLRGHNSPLPDLQVRWEPYVSSEDDKSA
PTLLAYVSINLAKTALTVEGADTWVVLGSLMNLSQVNNIERLMQWSIYDD
FTLITPRGVVLTGALKPGQVLDEGVNFNRDGLVFKLSSPGEQHWTAIYVI
SLRSFLDYALWPLLCLVALALALLGCSRAVNRWYQARVILPAQRAHASIA
ESEAFSRTVIDTAPTGLCVIRRSDHHVLLENQRAQQWHDNGQLMSLLTPL
TGPGHADLEINGRHLHVAFVPTRYQGQDAWLCALHDVTRHVEDAAALEEA
RQAADSANQAKSRFLATMSHEIRTPLYGVLGTLELLGLTSLAPRQQDYLH
TIQRSSATLFQLISDVLDVSKIEAGQMTLELQDFCPLQLTEDTVRTYSAF
ARSKGLLLYACIDPALPDRLRGDPIRIRQILNNLLSNAIKFTDNGRVVLR
VQLLESDDGRAHVQWQVSDSGGGISLAQQQQLFDPFYQVNDATEQAGAGL
GLAICKWLCELMAGQLNLVSEPGLGSSFTLQLALEHAPGELADCPVFSPG
SSTVYVRAQVTEQAQHLIAWLNRFGLDCRPLRPDTPVSSALLVELSPLAD
TAAWPGPKVVARADGPNPAQLRGTDREVDAHDVRAIAWAIYQAQHGVSAD
SQPSSPEKPRQLNLQVLVAEDNVINSAIIKEQLEVLGCSVVVAANGELAL
AQWSPGRFDLLLTDVNMPVMNGYQLATALRLQDQTLPIIGVTANALREEG
ERCADVGMNAWMVKPLNLATLRAHLERHCKIALPATSVAPLKLSPKMREL
FVTTLRQDMQTTLTALDNADAHRVAQQLHSMAGALGAVQLEELATTFVEL
ECRLNGLSLTHALDLEVRQNLARLKDLLGTLE
>PFL_0507 sensory box-containing diguanylate cyclase, putative
MKSQPDAASRMAAEVVTQLPVPSRLGMLRFERLNEASWALLFLDPNCERQ
FGLPAVELCALVGSPYASLMEPEARYQLHDTIQQQLSNSSHYLIRYTLHT
AQGPLSILELGEAYKQHNRHLLRGYLLVVEGLFSDASALPALDLETQNTR
LQIALELNQRAQQEQLQHLERVRAQQDLILLLTRQRYSTGNSLKEAAELI
TRSACDIYQIDCASIWNLEDQQLVPIAAYHRGPQEYRMPESIDASSFPDY
LEALHSCRAIDAQNAMRDPRTREMAESLRPRDVNAMLDASIRIDGQVVGV
LCLEQTGMTRAWQSDEIAFAGELADQFAQVINNHNRRAATSALHLFQRAV
EQSANAFLLVNCDGVVEYVNPSFTAITQYSTEEVHGHRLSELPALENLSE
LLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG
IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDERFARDSDTPIS
LLLVDIDNFKRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEF
AVLLDNTDLETGQQIASQLLMTLDKPMFVDNQLISVTGSVGLASAPLHGR
DPQTLMRNAGLALHKAKANGKHQVQVFTEALNAEASYKLFVENNLRRALT
QNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMIRPDQFISVAEETGL
IIPIGKWIARQACRMSKQLTAAGMGNLHVAINLSPKQFSDPDLVASIASI
LKEEQLPSSLLELELTEGLLLEATDDTHQQLEQLKKLGLTLAMDDFGTGY
SSLSYLKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKIKVVA
EGIETAEQLAFLRRHRCDVGQGYLFDRPIPGSELIAKLKRYPRGPIA
>PFL_3337 conserved hypothetical protein
MSLAAHAGELRMLTDNHPPLHFQQGERMVGFGVDVVQALAQRSGDTVNVQ
LRPMLRALRDAGSDDDTAVFTILRTAERESRYQWVGPLMRTETALYTRNG
DSTPVTDLHQTRGQIAVPRKWLVYSYLKQQGLDNLWGVDSPEIMMRLLQV
GRVQYVVADTMSVGTFAAEEGLALDQLRYQMPLMHQDAYIAFSPKVDAAQ
VARWQQALDGMKRDGSLQQLKRRWHIDQATPQVD
>PFL_4158 sigma-54 dependent transcriptional regulator
MQLLTLPPSPALATSIRATAQVFEDPKSQALLAHLQQVAPSEASVLIIGE
TGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTG
ALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKS
IPIDVRVLAATNVQLEKAINAGHFREDLYYRLDVVSLELSPLRERPGDIL
PLTRHFIEAYSQRLGYGSISISPEAEHKLKSYSWPGNIRELENVIHHTLL
ICRNGVIQRDDLRLSNMRIERADDSHPSHDDSAEALLERAFEKLFAEQAG
ALHEKVEDALLRAAYRFSHYNQVHTANLLGLSRNVTRTRLIKIGELAVNK
RRPIDAPNERTLQLSI
>PFL_2709 sensor histidine kinase/response regulator
MIALRPSGLLRRLLLFILLFSLCFTVLASSVQLYFEYRREMRDIDSRMEL
IRAGYLGSLERNLWDLNQEQLTVQLQGLVDFSDVARVHLISNDFDLQQGS
AELIGPLRVERFPLSYQPPSGPLRQLGELQVSTDLGAVYRRLYATGLASL
LWMSVFLCGLAVALSGLFYRLVTRHLQVMADFARRVAAGELHEPLHLDKR
QRPDGDEIDTVARALDDMRRAVLDDVQRREADRLALQDKRDELQKMVQRR
TASLMHAKDEAEAANLAKSRFLATMSHELRTPLNGILGMAELLRSAPLGS
QDRQRLQALHQAGEGLLSILNEVLSFARLEEGESRPEVRDFSLRQLLEEV
TTLLQPRAEANRTRLELHIDEQLAPRQQGAEQYLRQVLSNLLANAIRFTE
DGWVRVEVQVLHSAAEGQRLRCCVRDNGIGIAASMREKIFERFVQASDEV
SRRYGGTGLGLAICKHLLQQLDGRIGVDSELGQGSSFWFELVLGVGQEPL
PSPQLQVPAQGLKILVVEDVALNREVASGLLQRDGHQVWLAQDGEAALAL
CRQQAFDLLLLDVHLPGISGVELCRDIRRRPGPNRQVRIFALTASVQPSV
VRSYLQAGMQGILGKPLQLASLRQVLAGQVQVPQADTEEGLLDQSVLDTH
RSLLGEQKLQGLLQVLADALDQQQPLLSDALAAEDCTEVLHLAHRLAGSA
DSLGFCALARVLRELEGAAEQADRPALAALGVSLQTSWQQSRALLQQLLA
A
>PFL_1972 response regulator
MQKTSATLLIIDDDEVVRASLAAYLEDSGFSVLQAANGQQGLQVFERDNP
DLVICDLRMPQMGGLELIRQVTELSPQTPVIVVSGAGVMNDAVEALRLGA
ADYLIKPLEDLAVLEHSVRRALDRARLLLENQRYREKLEAANRELEASLN
LLQEDQNAGRQVQMNMLPTSPWSIDEFNFAHQIIPSLYLSGDFVDYFRVD
ERRVAFYLADVSGHGASSAFVTVLLKFMTTRLLFESKRNGTLPEFKPSEV
LGHINRGLISCKLGKHVTMVGGVIDEETGLLTYSIGGHLPLPVLYTPDSV
RYLEGRGLPVGLFNEATYEDHILELPPVFSLTLMSDGILDLLPEPTLKEK
EAALPERVRAAGGGLDGLRQVFGLATLGEMPDDIALLVLSRNLQ
>PFL_3686 EAL domain protein
MSTLSVLLLCSNAFRVRHFSRILASCGFARVQVISDDCDGAQFPPALDEL
DLVICDSLHSLNAIPYLRRLCEHHGFFSMMECEALQAPIRWGLANFRVRS
GKYCVGSYNELDTLQISALLLKALAIKRTVKGHARDDAPGAAGAGCANND
WVAELDVSQALEQRQIVPFFQPQVCMKTRRITGAEVLARWQHPHKGVLGP
QFFLDLFDSPQGHRQLFDCLLQQGLALQRQLQGHVSGDALMFSYNIEASQ
LSDPQFALRVLQQIDEAQVPTRQVTLEITERQALVLSMQCIENISVLVHS
GVRLSLDDFGTGHSSIMRLADIPFGQLKLDSGFVANATGAKETRIIEAIV
GMAGALNLELVAEGIETEKQRAHLQRLGVDAAQGFLFYKPMNAAALIRVL
TLSRPPQRQIIQS
>PFL_0664 sensor histidine kinase/response regulator
MRWLRIALGFTVTLLTLLCLNPALAAQGSGWAVLLDEQADLQLSDIRSPR
YTNQFSPIELDKLTAAEPDGALWLRFKLQPGTHEQILRIFAPDLSHLNLY
VLEGDKLIEQVNTGSGPSQAQKPLPSSDFMLPLPQSAKPLDVYVRLVSEH
ELRPFITLQSAVMGAADQSQTLIYGLLFGCLAMLILHNLTRFAYTRSRSS
LWLAACEGLLTLSLLMLLNLFGPWLPAWEALQTPGAYIALLLTAPCGMMF
AYRFFAPLGAHPLNRLLLGNILLISLFGLLLLFVDTLPLNIITYGLVALA
GLSMLFVGGYHWHKGYRPARLFVAAMVIFNLGTLVILPALLGLTLVAPQG
LIVTLLSVVCIAGLLMSIALGERQRNITENRFSVSRDLAASTAEVNAKAE
FLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLI
NEILDISKLESGQIELDDVQFDLNALIEDCLSIFRAKAEQQNVELISFIQ
PQVPRVISGDPTRLRQALLSLLENALKKTDEGEVLIVVALDERSSKPRLR
IAVQDSGQPMEAEEREALLHTELHSKNFLATTRLGGNLGLVIARQLILLM
HGEFGIKSGTNQGSTLWLTLPLDAERLEHPTADLDGPLQGARVLVVDDND
TCRKVLVQQCSAWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLLDQNMP
GMTGMQLAAKIKEDPSLNHDILLIMLTGISNAPSKVIARNAGIKRILAKP
VAGYTLKTTLADELNQRDKAPAAPYNQPAHAAQTPAPVTVPSDFRILVAE
DNSISTKVIRGMLGKLNLQPDTASNGEEALQAMKANRYDLVLMDCEMPVL
DGFSATQQLRAWEVGNQRVRTPVVALTAHILAEHKERARQAGMDGHMAKP
VELSQLRELVEHWVTQRDLRERSTAHTS
>PFL_4490 sensor histidine kinase
MIEKQQALDFSTVIASTVHDMKNSLAMLMQAHAQWLARLPEQQNAPEQGV
IDYQFAHLNGMLVQLLGLYKLGINQLPLQPAYHELDDFIEAQLVSHQDVF
KSRGISAAYEVDPLSPLGFFDRELIASVLANCINNSIRHARHALLISVSD
EEGQVVLSINDDGEGYPQGMIERQADYVQGINQSSGSTGLGLYFAGRIAE
LHQRNGVCGHTRISNGGPLGGGLFKLYLP
>PFL_2747 sigma factor regulatory protein, FecR/PupR family
MNIFSISTPQASADQQLLNEARDWLVLLTSGQATAADARALRQWCGQSPQ
HAAAFEQTKALWHCLQPAAALLEQQARPRHFGRRAFLGGALAASAALFMV
RLTVPGGFAGLTADFATEVGEQRRVDLAEGVSLELNTQTRISRRDLGAGE
QGIELLEGEVEVFSQRLQPLKVQAGEGWLSARQARFNLRNTDHQVCVTCI
EGSLQVDVAGRSIGLDSGRQLTYDPRSIGEPQVVDIHSVIAWREQVLVFD
NASLNTVISEINRYRPGMLVLLNAELGKRKVQARFNLNQLAGVALLIRDA
YGAKCTELPGGVVLLS
>PFL_2407 methyl-accepting chemotaxis transducer
MRLPPALCAKSRRCRGAWPHRAPHRCKPRLASPVVLFAATRNTVMLLRTM
NISRRAGFSFALIALLALALGGFSLLEMQRMNQQSLEVDQNWQPSIVAAN
ALALTSTQIRTLTLRMLVVRDSGDVQALLSRLNELEQQQDRQQQAYEKLI
NVDDERAAYERFVEAEALYLKDQHRITDLMRQGHKEAAIDIVDGGPFLAN
ADAMLKELLTIIDVNTRGGIAAAAQSNQVFKGAVGMVLLIMLVVVALTVV
LALFLTRSIVRPLGQAVEVAETIARGDLGQSIAVSGKDEPARLLHALQTM
QASLRGTLQRIADSSNQLASAAEELHAVTEHSSQTLHQQSNEVEQAATAV
NEMTVAVEEVARNAVSTSEASQETDRTAHHGREQVQHTVDSIGQLAEDVT
QTCQRVENLAVDVRNIGQVLEVIRSIAEQTNLLALNAAIEAARAGDAGRG
FAVVADEVRALAHRTQQSTQEIESMINTIEEGTEGAVSAMRNSNERAHLT
LEAARASGLALDQITQAITTINERNLVIASASEEQAQVAREVDRNLINIR
DLSTQTSAGANQSNAASQELSRLAVDLNALVTQFKL
>PFL_0146 sigma factor regulatory protein, FecR/PupR family
MKPHQAPIAPSVVEQASEWLMLHWGGELSAQQRSAFDAWQQADPEHQRAW
QRLQQLQQTLQGVPEHSTHVLLAKAPDQQRRAALKLLGLLLVAGGSGYLV
QDSQPWRAAFAGQRSATGEIRHLTLSDGSRLDLNSASAVDLLFSASERRI
RLIQGEILLTSGHDPSRPLIVETPAGDIQALGTRFAVRELDGGTRVDLYE
GALRISPRHAQALQLNAGERLWFDAGRVSARQVAQVNASSWSEGRLIAER
QPLGQFVAELSRYRPGVLRCDEQVAGLLLTGVFPLADSDAVLAALERSLP
VRAHAVTRYWVTLKPRG
>PFL_3325 response regulator/GGDEF domain/EAL domain protein
MDAGSDAQTKAQEASDQPPGRANRRILIVDDSPAIHEDFRKILAPRQAPD
LSLAEQQLFGHATMPAQQAPFCLDSAFQGQEALARVEASLALGLPYAMAF
IDMRMPPGWDGLETIERLWNADPDLQIALCTAYSDYSWEAMAQRLAFGDQ
LLILKKPFDSLEIRQMASALTWKWQMAQDARQKLDDLQQTIERRVAELLK
VSHLLHYDVLTGLPSSTLLGDRLGQAMARARRYEQRLAVMFLGLDRFKRI
NHALGYPAGDELLKRIARRLEQGMRESDSLFRYGSDEFVVVLHDQQHPAQ
IRALAQKLLATVSQFDDIAGHDLQVTASLGISLYPEDGQDALALIKKAEM
AMRTSKEQAPGSYCFFTDDMTHRAREQQYLESGILQALERREFHLHYQPK
IHLASGNVVGAEALIRWQRPQQGWISPELFIPVAEDSGLITRISQWVLGE
ATRQCRAWQNAGLPPVPLSINLSAADFRQPQLLQQLRDALSDNALDPAWL
ELEITEGVLLQNVEVTLATLLAIKALGVRLAVDDFGTGYSSLSYLRKFPV
DVLKIDQSFIHGLSHEHKDAVLVSAIINLGRSLNLKVIAEGVETHQQLTF
LQQQGCEEAQGYYFSKALPAEDFARLLGKHRPQFQVTDHDH
>PFL_2536 HDIG domain protein
MGMYIHQFCGSWLDHSFWKAGFVLNSHADLQRLRQSNVSSLWIDSDKGLD
LPANPQPSAPAALPPLKSEAPLRVERAEEIQRALKICAHSKKAVMQMFQE
VRMGQAIELVQVDELVHNISSSLLRHPDVLISLARLKTADDYTYMHSVAV
CALMVAVARQLELPVEQVHQAGVAGLLHDIGKLTIPDSILNKPEKLSADE
FERIKLHPAAGGAILRQNPQLDALVLDVCLHHHEKIDGSGYPHHLAGEQI
SLFAQMGAVCDVYDAVTSTRPYNRGWDPAEALQRMSGWTGHFGPRVLQAL
VKCVGIYPVGSLVRLNSGKLAVVLEQNNESLLLPKVKVFFSTRSKMPLPQ
RVLDLSRLQGEEHIVAREAQEAWDFKQLQQLWSEVPA
>PFL_6174 RNA polymerase-binding protein DksA, putative
MTEQDLLAQPETHYMNEAQQGFFRQLLLAQRSDLQERIAGEFDQLREQEP
HSDPADIGSAEEQRQWQLRLLEREKKLLDKIDEALERLARGEYGWCRDTG
EPIGLKRLLLRPTATLCIEAKERQELRERHQRAL
>PFL_2013 tail tape meausure protein
MASKLALGLVIGGAVSSTVGAAFKTVEGRIKKLEEQGNKAKVLKNTIGET
MRLRDEWRRAHETGAASAAGLLRKLEGNLTSLQKQGIQVNKLRQEYQALG
RVARGADLQLKGHQQIQQGKEGLKSSIGQAVAGVGAVAIPTKISADYQAI
IRDIAIKADVANKPQEAQLTRTIIQTSQDTGMGRNDVAELVNQLVGAGME
LDKALSYAPVAAKFAVGQGSGGEDTAKMIQALEQNAKISDPKVMEKALEA
IAMQGQAGSFEASDMARWFPQLLAGMGKMEITGMDAVSQLGSMLQVQMKT
AGGSDEAANNLKNWMEKIGSGEVVKAYKDAGIDYQASLSTGVQKGMSTLE
SSFELAMRYIKATDPAKAAKMAEAQAKISKEADPAKAKAMLNALEQSLRT
GNLFSDMQVKAALTAYSQNRELYEQLKKDSLSAKGILDKNLAERRETSSQ
LWAETAHAMNDGMRAVGDALRPATDAVAKHITTVARSLTGLAEKAPPLVM
GITALGAGLVALKSVVSAFKIGKGLLNVARGSLMGNPNVIQRVFVTNAGG
LGGGDYDVDGGKDKKGGKGGRGSRAGRAGRGRLGSVGRALRNVFSRGGVG
TVAKGAVGLGSAALKGTGSLLKGLAPVVKGGAFLSVLGAGLKAADIYQNA
KTKDEKAEGYGGAAGGLAGALVGTKMGLAAGAAIGSVVPGLGTAIGGAIG
AAIGGTVGYLGGDALGSFAGKSMFGSDESLKRMPAAGPLMLANAGKDIPP
VLGDIAKSFKTGQTPPVMGQVVRSMGAATPASVVPSMLKAPDPAKSVAPK
VDQQFTFAPTVPITVQGDVKDPAQVAREVEPHLRRMFDEFSRQAAARQLS
DEPHV
>PFL_0708 RIO1/ZK632.3/MJ0444 family protein
MKTPKRIEPLIEDGLVDEVLRPLMSGKEAAVYVVRCGNELRCAKVYKEAN
KRSFRQAAEYQEGRKVRNSRQARAMAKGSKFGRKETEDAWQNAEVAALFR
LANAGVRVPKPFDFLEGVLLMELVADEYGDAAPRLNDVVLEPDQAREYHA
FLISQIVLMLCTGLVHGDLSEFNVLLTPDGPVIIDLPQAVDAAGNNHAFS
MLERDVGNMASYFGRFAPELKGTRYAKEMWALYEAGTLHPGSVLTGEFDD
PEELADVGSVIREIEAARLDEERRQAVRAADDAPPGKSEEPPPPPWMQ
>PFL_4269 universal stress protein family protein
MIRSMLYATDLGLYAPFVMQHALELARTFNADLHVVHAVEPMGLFAESVL
QSYLDEQSLNEFHRQGLNTVMANIEQRVLDSFREELGEGMQDLTLIQSVR
VLQGDPSQVILEQAGKLSVDLLIVGSHSHGVGAQTPLGRTATRVLQLAKV
PVYLVPLVQRRRQGDT
>PFL_1644 response regulator
MLIAEDGAADRMLLSSIIRRQGHQVLAASNGAEAVQLFQQQRPHIVLMDA
LMPVMDGFEAARQIKALAGETLVPIIFLTSLSGGEALARCLEAGGDDFLA
KPYNPVVLGAKINAMDRLRRLQETVLHQRDQITRHHDYLLNEQRVAKAVF
DKVAHAGCLDAPNIRYLQSPYALFNGDLLLAAYTPAGDMHVLLGDFTGHG
LPAAVGAMPLAEVFYGMTAKGYGLPETLREMNAKLKRILPVDMFCCATLL
CLSSQRRAVEVWNGGMPEGYLYRHASGARTPLVARHLPLGVLSAESFEDS
TEVFSMAPGDRVFLLSDGVIDTCNTEEQLFGVERLHQVFAANRQEDQLFE
EIRQALERFGGSARDDVSMVEVGLPEFPRLAPPALVYSDSGQSCPLDWSV
SFEFRAATLKRFNPLPYLLQLLLEVHGLRSQSGALYSVLAELYSNALEHG
VLKLDSRLKRDAEGFTRYYRERSTRLAQLQEGFVRVHLQVQPLEAGGRLV
VRVEDSGEGFDVAAVLARPNDMERLSGRGVSLIRQMSQQAVWADDGRSVC
VEFSWEALA
>PFL_6161 sensory box-containing diguanylate cyclase, putative
MTLNPDLSGPFVEPRVIRQHYAVEMAVERTRLLYQGSLLPTLFMLLNGLV
CTWLLWSPARYLLLSVWMVWLLALVALRVIQVAAFDSAIPSRQAQPVWQR
MFLLGSAVSGLTLACAGIALVPTDNFLQQAWVFGLIGAAILSASVAYAVS
LQAFLSFTLPCLLPAIAYLFWGGDDQQRGWGWLGLILLVSLSVVAWQVNR
LMQRGLLRRFQNQALIEHLQNAQGRSDQLNRELAREVEQRRRAEEQLREA
QTGLEQRVAQRSLELDAANQALSKSEARLALALNASELGLWDWNLQTDEV
HHTQIKELFGLEPEDVTAMLSHLKPRLHPEDLPLLKRALVEHLKGRSDDY
QVEYRVRHGAGHWVWIEDRGRAVERSPSGRVLRMAGTRRDISADKELEVQ
RNLAATVFEAASEGIVILDPDYALIAANQAFSQVTGYQIEDMLGRNVVEL
SCSRDARRHYPLIHQALEQYGSWQGELVETRKNGELYPQWLQLNVVRDKR
GKVRHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREAHQ
RVRQGGRSLALLHINLDRFKLLNDSLGHEVADQLLQKMARRLVNALPEAD
TIARLSGDEFAVLFDAYGSLSSLTRVATRLLSKLRLPITVEGHELVVSAS
MGISMLPDSAREIAALISQANMAMAHAKHLGGNNFQFYTESLQASTLERL
QLENQLRKAIEEGQLTVFYQPKLCLASGRLNAAEALVRWDHPVMGRVPPG
DFIGLAEETGLIGPIGEFVLRQACRQACEWQRQGLEPIRVSVNLSVYQLR
QGKLVSLVRQVLEETGLEPHFLELELTESQLLDSVEHIIATFQQLRGLGV
KLAIDDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLAEGGEDAAITRAIIA
MAHGLSLKVVAEGVEDPAQLAFLKAEHCDEVQGYLISRPVAAEGLALLLQ
AQSR
>PFL_3249 methylesterase, CheB-like
MSQEIVSQGFWPQIEAIVVGASAGGVEALLKLFSGFAQGFRLPVIVVLHL
PDERRSQLAEVFDRRLALAVKEADDKEQIVPGTLYFAAPGYHLSVEQDRS
LSLSQEERLHHSRPAIDYLFESAADAYGRNLAAVLLTGANQDGARGLAEV
KRQGGLTIVQDPNEAHVSTMPDAALALHQPDYILPLRGISRLLAELEGTH
VK
>PFL_3637 sensor histidine kinase/response regulator
MGGALFWGGQRIIRQEQERIAVDFQLLTRYMSEQQALLQRLAGEKRLQYK
DADQDPAQLFHLMEQQEAVGATLFQGNPSSVETPFTLVCQDLAQCPHQSA
AAAGLGRYLADLYSSFWVRSSFPASALLVVDAGAGSSFTVPTIGSRWPRL
TTPLVLAGLHAVRASATSSDSDAIRWIRLKDFPQHMIAFTALHNLAPGSG
LQSSGTYAACLTYRDRINVFTTPQRRHFYDKFWLQGRLDGLLLGDEPAPL
ALHEGANVRSDGLLFRINDASGHWSGYYLLSYRALFLGHSWSLAAIFLLL
LLSPLAARVYARWYQRRVIAPAQQAHAELVENHQFSRTLLETTPVALCVL
SREDRRIVFANNLALKWFTTQVGQSLDASGLDPALLERIARAREPGEIEN
FQSFDGRSFYIAFAPTRYRNQDVLICAFADLSARAQMEQQLTQAKQAADK
ANGAKSVFLATMSHEIRTPLYGVLGSLELMGLTDLDREQRQLLERIQVSS
GLLLQIISDILDITRIESGQLSLGDQLFDPRALVQRCTASFVDSARNKGL
LLFSWVDPELPPALLGDPGRISQILTNLISNAVKFTHSGQVIVRARAEPG
SQGRVLLSLQVADTGIGIGKEEQQQLFIPFYQIDAHSHTVHGAGLGLSIC
AKLAALMGSQIHLTSELGLGSSFSMQLELPVASDPNAERQPDLGGARIYV
QSPHHELTDNLCQWLQKWHAQATPVDATAPPPQGQGVLLRLFDDRPEASE
ALPPGLLRIDLGGQQRTPGAGLAEAGDYYAIGRLLERTLGGAPDAPAEPE
LPARDIATLAPLGLNVLVAEDNPINQATLSHQLQQLGCRNTLAADGAEAL
DLWRIGDYDLLLTDVNMPRMNGYELTCILRAAGDDRPIIGITANAMCDEE
ARCQACGMDAWLVKPVPLQTLRASLARLTSLAPEPPAEPAAAPGNAPVDG
LPPNLRELFARTMGQDVEHLRQALDEEDYERIFQLLHRVRGSLAVAGQEA
LILQVHDLGQSLRQSGLTATTRTHSLMLLHALQDISQLE
>PFL_5806 amino acid ABC transporter, periplasmic amino acid-binding protein
MHKITLLGCTLGLLFSAMSQANEAPLQGTLAKIANSASITLGYRDASVPF
SYVGDNSGKPMGYSVELASKVVERIQQQLHLPNLKVKYNLVTSQTRIPLV
QNGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTAKDSGIKSFADLR
GKNVVTTAGTTNERFLKSYNVEHKIDMFVISAKDHGEAFQMLQSGRAAAF
YMDDALLYGERAKARDPHNWVVVGEEQSREIYSCMVRKDDPQFLALVNGA
LADLYRSGEINGIYQRWFQQPIPPKGLNLEFPMTSELKAIIAQPTSDPVQ
>PFL_1593 DNA-binding response regulator
MSDLLLIDDDQELCELLSSWLSQEGFLVRACHDGLSARRALAETAPSAVV
LDVMLPDGSGLELLKQLRNEHPDLPVLMLSARGEPLDRILGLELGADDYL
AKPCDPRELTARLRAVLRRSHPVAASSQMELGDLCFSPLRGVVNIDEQDI
TLTVSESRLLEALLKQPGEPLDKQELAQIALGRKLTLYDRSLDMHVSNLR
KKIGPHPDGRPRIVALRSRGYYYSL
>PFL_4920 DNA-binding response regulator, LuxR family
MTCRIIVADDHPLFREGMLRTIQRLLPDAVLEEAGDLAAVMALAESGEEP
DSLILDLRFPGLTSVSMIAGLRQQLPRTSIIVVSMVDNQDLIAEVMAAGA
DGFIGKSISPDEIGQAIQAIREGDVVVKYAPSGLLLPLDACAEVSQLTTR
QQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLHTLKVPSRAAAAVK
FTGTW
>PFL_5051 heavy metal sensor histidine kinase
MPSNSIALRLSGLFTLVALLIFLLIGGALYQQVDKGLGLLPEAELDARYS
VLESALTRYGNPEHWAKINAKLKLLSEEDKRIRFWAISGDPGYEYGSPDA
QIREFAQGPLGMRDLNLSDHPYPLKVLVSQLPAKEQRPTLRFLIAIDTDT
FHQTQHQLLMALIGLAIVGVLLASALGYWVARIGLKPLIKLSQEAQRLAP
PRLSGRLQLSPLPPELKQFVNSFNSTLERVEHAYSRLESFNADVAHELRS
PLTNLIGQTQVALTRGRSAEHYFEVLQSNLEELERLRSIINDMLFLASAD
QGSKATKLTTSSLAAEVATTLDYLDFILEDAQVRVEVQGDAQVRIEVAHL
RRALINLLSNAVQHTAAGEVIQVRIEVQEHQVAIAVSNPGQDIASEHLPR
LFERFYRVDASRSNSGANHGLGLAIVKAIALMHGGDVFVRSDRGINTFGL
YLPL
>PFL_4803 sigma-54 dependent DNA-binding response regulator
MLNSVIVVDDEASIRTAVEQWLSLSGFEVQLFSRAEDCLAQLPKNFPGVI
LSDVRMPGISGLELLAQVQRLDPDLPIILLTGHGDVPMAVEAMRDGAYDF
LEKPFSPDTLLSSLRRALDKRRLVLENRRLHQQADSRAKLDATLLGVSRA
LQTLRRQVLELAALPVNVLIRGETGSGKELIARCLHDFGPRAGKPFVALN
CAAIPEQLFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFLDEIESMPL
AQQVKLLRVLQEQKLERLGSNQSIKVDLRIIAATKPDLLDEARAGRFRED
LAYRLTVAELRLPPLRERREDIPLLYEHFAQNAGERLGRSVAPLSGAQLS
RLLSHDWPGNVRELANAAERQVLGLGEPEPDAIEPGQSLAAQQEAFEAQC
LRAALSRHKGDIKAVLNELQLPRRTLNEKMQRHGLTREQFLKEE
>PFL_0366 conserved hypothetical protein
MFKRLLVVVASASLVLCGLARADEPADTSLVLLTENFPPYNMAKNGKNFA
QGENIDGIAVDIVREMFKRAGINYSLTLRFPWERIYKMALEQPGYGVFVM
ARLPDREPLFKWVGPIGPDDWIMLAKAGSKITLESLEQARKYKIGAYKGD
AIAETLTKQGLAPQVVLRDQDNARKLVAGQIDLWATGDPAGRYLAKQEGI
SGLKTVLRFNSAELYLALNKDVSDEVVAKLQAALDQMRQEGLVEEIMGRY
L
>PFL_5775 amino acid ABC transporter, periplasmic amino acid-binding protein, putative
MLRLHRALALIGLLLLGQSAFAERLRLVADAWPPFTDATLVNGGVATDIV
STALSRAGYSSEFEQVPWARALLGIGEGRYDVLVNAWYNEERTQLGQFSA
EYMVNRVRFIKRKDAPLEYSNLKQLHEYPVAVVRGYAYSPEFDNDPDLQK
VPVHNFAMAVRMLAADRVKLTLEDEYVARYYLARESPRVRNAVEFLPKPL
SENSLHILVSLKNPEHAQIVARFDKEIAAMKADGSYDRLLRQHGM
>PFL_5702 CBS domain protein
MQFLQRFPPFNQMEQLHLAYLVEQCQLRFYGPGDSIIKPADGPVEHFYIV
KQGRVVGERTHAAKGSTETTFEITSGECFPLAALLGERATRTEHRAAEDT
FCLQLNKGAFIKLFALSAEFRDFALRGVSSLLDQVNQQVKQKAVETLGTQ
YSLNTRLGELAMRHPVACSPQTPLREAVALMHEQQVGSIVVVDERKAPLG
IFTLRDLRQVVADGTQDLNQPIEQHMTQAPFFLSPDHSAFDAAIAMTERH
IAHVCLVKEQRLCGVVSERDLFSLQRVDLVHLARTIRNAPRVEHLVALRG
EIGQLVERMLAHGASSTQITHIITLLNDHTVCRVIELTLADKGDPGVPFS
WLCFGSEGRREQTLHTDQDNGILFEARDTAHAAEIRGKLLPIAQQINQSL
AMCGFTLCKGNIMAGNPELCLSRAEWARRFAAFIREATPENLLGSSIYFD
LRVVWGDEQSAEQLRRGILDQVADNRLFQRMMAENALRQRPPVGRFREFV
LARKNGEKATLDLKVQGLTPFVDGARLLALANGIGAINTLERLRQLVSKQ
VIEPLDGAAYEEAYHFIQQTRMQQHQRQTRENQPYSNRVDPDSLNHLDRR
ILRESLRQAQRLQSSLALRYQL
>PFL_0674 methyl-accepting chemotaxis transducer for inorganic phosphate CtpL
MRLKLLTNLNTLLLVAVCLALGATLWWSQRALERPYLLMERYLGLSQQFQ
NQVARNIEDYLASGDALRLSSAAQALETLQGELGELPPPLAQSLRPSLAS
LDDFSKTDLLAAGKLAGDPQALLLQAERELGANLEQLSQYASGARSAEAA
NYLPLLLTASQHLGKLSLARDKLVSSGRSELAADVEREVNSIRAQADQLE
ALPLLGVAASSESGTDDFAAMMGLENTEKAAAEDAGIGFKRELNSLLSRY
PAELQRTREQIQKRADLSAATLLKINAVRQAIAELEPAVRAQHGQIQGEV
RLMQGLMIGLILLIALVIDTLQRKLARVLTNLAPALSTWAEGDFSRPIQL
GKTNRELHDIEESLNRLRAYLVDLVGTIRQNAEQVAGSSRALADLSSGLH
SGAERQAGDTAQIRDALGELEATIQQVAGDASQAADASRSAGLAVQQGQK
VIGLSLTGLHALVGEVQGNAQMIEHLAQESATIGGVLTVIRSIADQTNLL
ALNAAIEAARAGEMGRGFAVVAEEVRSLAQRTAGATAEIQTLIAGLQAAA
QQSVQGMRAQVEHAEATAGQAQAADGALDEIVGAIQTIADTAVRIADVTA
QQSGAVSEIRDHSERIHQLGGDNLLRIGEGRAQGENLLDLGGQLHTAVQA
FRV
>PFL_0690 DNA-binding response regulator, LuxR family
MKVLVVDDQPLIVEELCEFLESSGYRCVPCQSSRQALECFNRDPEISLVL
CDLHMPDMDGIQLVQELQRMAGKQRVFEAIMLTGQSDKQDVIKALRAGIA
DYYQKPIDLDELLEGLQRQEVALQERQKNLHLGHLNQKLQFLSESIDDLY
QDLDKVRRSPATSRSEEPRGEGAGEGDAIEIPAIFNQLSPRQLDVARLVG
KGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALALSPSNSGLR
QRVTAH
>PFL_3596 GGDEF domain protein
MFRTLEEQVFKQAAPAALKLEFAQHDFERLRSFCVLIYTASILIWLIFDL
IVSFPGQQGFTAYSMVFLSILSFTTIILGFTRQGRHFQWVNLLFVLTITI
GVRLVIEGLPIDQRPVWLILGASSMLYGASVMPLRRWSFVSAIFITWLVL
NPFWRTSTTLQELKGLLVLVYALFLSALTLYSFITLRRARLHNYIMSKLL
LDQAYLDTLTEIPNRRSFMARAGQRLQALPREHDHYLAMVDIDNFKKVND
VYGHDIGDEVLKRIAADIKGVMRDFDYARLGGEEFAIYLADVPRADVEAL
ATRLCQVVRDQPTRHPVTISMGLARVEPGETLNQALIKADQALYESKHGG
KDRYTFHPAARPAPPT
>PFL_4820 conserved hypothetical protein
MRLWLGNTWVGWLLLLCLGPLQAAPSVDDGAAARALLEKALGYYHDQGDM
AFAAFSRQGEFVDHDRYVFVVDTQGVMLASGGPSSALIGRDVSQVLGPDL
RKAFKQALKTPEGNGIQQAEYRWQNWADGKIERKHVYFQRVGERILAVGY
YQPRASAEQARALLERAATALSTDRNGTLKAINQLQGGFLEDDLYVFVVD
MDSRRYLAHGTNLRLLNTDFAKIRDPEGKPVGEPMLALMAREDQGEYQYR
WKNPVTGKVEDKHAYLRKVGNLLVAVGYYSP
>PFL_4750 sensor histidine kinase
MRLANFILIHMESILLEWERFARSIETPYPTQDVHGLRNQASRILNCIAH
DMLTPQSDAQQFEKSQGRGPVADADKVAQNHAQARWSAGFTLNQMVAEYR
ALRASVLRLWLSSEPEIKATHTDDMLRFNEAIDQALTGSIVSFEVVLEQT
RKLFLGILGHDLRSPLGAALMGSDLLARSVTDRRQKNLAQQVGTSVRRAN
RIVDDLLQLARSNLGEGIQIRKEPVELNTLCSQIVEEVRAYYPGVRVLFE
EGEVLNGLFDPERMGQVLANLLGNAVQHGDVRKPIEVRLTRNPSETCFEV
HNYGKPIATEAMPLLFSAGGSGYERGASSGLGLGLFIAAQIVAGHGGEIQ
VQSTKEAGTTFRVRIPATSE
>PFL_4241 GAF domain protein
MIDLQSAGQGLDGYGLLCAQLESLLADERDFIANAAQFSAFLYSQLEDLN
WAGFYLNRNQELVLGPFQGQIACVRIPFGRGVCGTAAATLQTQRVEDVHA
FAGHIACDSASNSELVVPLVKDGRLIGVLDLDSPKLARFGVADQAGIEQL
AAIFLRLSDC
>PFL_5664 sensory box-containing diguanylate cyclase, putative
MLLLALLTWTATAGALTLTDEERSWLKTHPELRLGVDASWPPFEYRDEEG
RYQGLAADYIHLIQERLSVNLKPVEPASWTAVLEDAKQGKLDLLPGIMST
PERQSYMAFTRPYLDFPIVILAHEGGAQPHNLKELYGLKIAVVENYAPHE
LLRTHHPDLNLVAMPNVSSALQALATDEVDAVVGDLASSVWSLRQLKLDG
LYVSGETPYRYQLAMGVPRENKVLVSILDKVLADLSPEEISTIQQHWVGS
VLDHRTFWSDVLMYGLPGLLLLVTVLAVVIRINRRLSSEISRRVALEQEL
RSSEYHYRSLVESLSAIAWEARISDFTYSYVSPHAEALLGYPLAHWLIPG
FWRNIIHPADLTRAQAFCDHEVQAGRDHSLDYRVIAADGRCLWVRDIVSL
IEHGHEPVMRGLMIDISETKHTEEALRLSEQKFASVFQQCPDILVIARLS
DGCLLEVNKAFEEQIGLSAQSVVGQTATELNIWGIPGVGPGLLQRLQAGS
IRNLEMPFRRHNGQLFTGLISAEPFDLDTTPALVVVVRDISQLKETQQQL
QTSEEKFAKAFHASPDGLLLTRQRDGLLIEVNEGFSRITGFNSAMSLDRS
TLDLGIWVNLNERKQMLDLLQRDGFVRDFNCHIRRNDGQIRLCELSSRPL
PIGGDDCMLTIARDITDRRLMQEKLQQAATVFESTAEGVMITDTQQRISA
VNRAFSEITGYSEREALGHTPRLLASGLHDSAFYAAMWHQLTLEGHWQGE
ISNRRKNGELYPNWLTINAVRNRENQITHFVAVFADISSLKHAQARLDYQ
AHHDPLTGLPNRTLFESRLLSALNSQQDNGSQGAVLFLDLDRFKHINDSL
GHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLHQASDADHI
ATKLLNCFTAPFQAGEHEFFISASIGTSLYPKDGCDVATLIKNADAAMYR
SKAKGRNRVERYTRDLTAQASERVALEHELRRAIERNELSLYFQPKISLS
NHELVGAEALIRWHHPTFGDVPPEHFIPLAEENGMILLIGDWVLEQACLQ
LNNWNRRFEDFGPLSVNLAGAQLRQPNLLGRIEQLLRDYDLQPGMLQLEI
TENFIMSQAEEALEVLHQLKRLGVQLAIDDFGTGYSSLSYLKRLPLDFLK
IDQSFVRGLPDDPHDVAIVRAIIALGRSMQFTVIAEGVENQEQQTFLTLE
GCEQIQGYIVSLPLEAEEFCTTFLRIRVSDFSDSTAEKPSL
>PFL_3379 Putative sugar diacid recognition family
MFELDHDLAQDIVDRTMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQ
LVLANGRVVEIDEPTARQLKGVQPGINLPLLHDQRLIGVLGITGDPAQLR
TYAELVRMTAEMLVGQRHQQAEQQWRRQRCDDLLALLLSDGGDSPRLVDE
AQQMGLKPQLARTPYLFELAQEPASGQGVDSLSSWLLSRYPDSWCVSSSK
SSLLWCRPASLSLDNPRLLEKLDGQGWNILRVAVGGQAEGLAGLRRCYRR
VGDLLAYGRDILPDARLLTLNRYRLPVMLWRHRNDDALDELLTPLRKVLA
KDSNGQLLATLRSWCDHDGQSQACADALGIHRNSLRYRMERIAELSGVDP
LRLDGMLALYLGVQLLPHRSEPA
>PFL_1591 sensor histidine kinase
MRSLFWRILASFWLAITLVAGLSILLGHMLNQDAWILSRHPGLNSLTEEW
TQTYENQGEDAAQDILQQRKRQYHIDVQVLNESGDPVVRGTFPRRAAAFE
ARQNNDDRHLPWRRLTAEYTSPKTGDTYLFIYRIPHPELDAWHRDSLTWP
LSALAIALVVLTLFSLLVTLSITRPLSRLRGAVHDLGQATYQQNSLARLS
NRRDEFGVLARDFNRMGSRLQSLIGSQRQLLRDVSHELRSPLARLRIALA
LAERAAPEEREKLWPRLTRECDRLEALISEILVLARVDADNASAEEVDLN
ALLVAVQKDAQLACPEQPVLITAPPQLHLRGWPTMLERAVDNLLRNAQRF
NPAGQAIEVTAQRQGEKIQISVRDHGPGVEAEHLSQLGEPFFRAPGQSAP
GHGLGLAIARRAAERHGGSLLLANHPQGGFIATLELPLVPGAVVQA
>PFL_3578 sensory box sensor histidine kinase/response regulator
MNGPHSGSEAANLIARLDWSATPLGESGHWPQSLRTAVDIVIHSPMPMLL
LWGAELTQIYNDGFALLAGNKHPSAFGHPAHLTWPELMDFTDPIYRAVLN
GQVRTFSEQRFSLQRTNGSEYDLWLDLTYSPIRNERGDVAGILVTAIETN
ERRRIALELQQRSDDSLRAQHETEERLQLALAATDAVGTWDWDIGEDRFI
ADAHFAQLHSVDPQQSRQLPISEYLKGVHPEDRGMVARGIKHCITHGTEY
AEEYRLQLADGQLRWVFARGRCYKDHHGRPTRFLGAALDLTERKQMEQAL
RQSQTELQLIINAMPVLIGYVDHEERFRLNNSAYLDWYGLTPQELYGKSI
REVVGDEIYATRAENIKAALAGKPCSFEANSPHRDGRPRHALMKYLPRYG
ADGAINGFYIFVIDETERRQTEEALRNLNETLEERVNQRTEALATANQRL
QNEMFERERAEDALRHAQKMEAVGQLTGGIAHDFNNMLTGIIGSLDLMQR
YIDNGRGAEIGRFTEAAMSSAKRAASLTHRLLAFSRRQSLDRQPLDPNQL
VRSLQELFNHTKGEHIELQMQLADGVWPVNTDASQLENALLNLVINARDA
MPDGGRLLIETANSYLDGSDISTLEPVKAGDYVMLGVSDNGAGMSPRILA
KAFDPFFTTKPIGQGTGLGLSMIYGFAQQSGGHVTISSEPDQGTCVRLYL
PRLFAAPLDSAEPATLNQAPQAIAGETVVVVEDDPAVRMLVLNVLAELGY
RAFEAEDARSALPLLESPMRVDLLVTDVGLPGMNGRQLAEIARQQRPGLK
VLFMTGYAEKAAERQGFLEPGMDLMAKPFSIEEMAQKIRQMIGRAS
>PFL_2568 sensory box transcriptional regulator, LuxR family
MSQAVLATETNRRQLQQIISGLSDGVILIETDKARTLLWANEAALAMHGV
STVEQLGGNLREYARRYALRYRNNHPLGLDSYPINRVAAGETFSDVVVEV
QAEIDGEPRHWVHRVRSMILEDRNGAPESLVLILSDATDWASAEQRFEKT
FNANPAPAVICRLGDLRYIKVNQGFLEMTGYARDQVIGRSVYELDVLEDA
EHKELAVERLGQGATIPQMQAELRLPEGGSKLVIVAGQPLDINDEDCMLF
SFMDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCSAEQQIVDVNEAFL
DTCGYSSEELLGKTVQDIGFIAEPQAAEQLFGRLEKSGNVMGLDLKVRKK
GAEQVDCVAYADTVLIQDSPCYLLVLMDISERKRSELELVGAIEEVMRDA
SWFSQTLIEKLANVRNTRSAQAPAVTSAELTTREREVLGLIYQGLADKEI
AAQLQLAPNTVRNHVATLYSKLDVHSRGEAIVWARERGLFAGSAG
>PFL_0707 methyl-accepting chemotaxis protein
MNIKQKLTWAFAVIASLPVVLVATLVVINLRSEAENTFVDGSGREIRQVA
NAMQLFFEGISQNIDYLAAQPLITQAGDNLKTWMSADAAKAPEGEQDKRI
FELFAAMAASHPAYSYVSYGVSNGGYVSWPADLKLANYDPRVRPWYKTAQ
ANPGKTLRTEAYYWASDDAVLVSTVRSLANQLGPQGGVVAVDVSLKQLTE
IVKQIKLGESGYLMLMENNGTVLVDPKQPEHNFKALGSLGEGYAQLAKAG
KGLVQVELGGEHYMANVWPSEQLGWTFIGLIKQNEVMGAATQLTWIIAGI
AAILAVLFAVLGASFASLIVRPIRGVASGLEGIAQGEGDLTRSLNIRGSD
ETAQLANWFNQFLAAIRNLIQSIGQAAQKILATSHSSTQVSSDMAEAAGR
QREAVDMVSTAFHEMVATANEVARSCSQAAESADSGQRQAREGQQQIDDA
VHSVDRLSQEIEQSAQSMQQLERDSTDIQSILGTIRSIAEQTNLLALNAA
IEAARAGEQGRGFAVVADEVRALAKRTADSTAEIDGLLGNLAKRTSAVTQ
QMHASLEVSQQSVNRIGLARNSFGQIRESVDVIRDMNTQIATAAEEQHQV
AEDINRHISQIHGDAQLVAELANSARLDSQSLAGLSNELDALVRRFKT
>PFL_4240 chemotaxis sensory transducer family protein
MLSTPALAQRRFPLHIHISAMFTLLLLLTGVVLGLYNYQQTTRLILDSSE
KLFQRIELDVRSDVKATYDPMRHLLSLLAGSPAAQAANLEDRLTLLRPFS
QALLDNPDLASLYLGYANGDFFMVRPLRNPQIRERRQAPQNSAYEVWSIE
RDSRTGQVHSQSLFYDPALVLIDRLEHPDERYDPRNRDWFSSARGDADQI
TTRPYVFFSTQNVGTTLARHSGKMAVIAADLTLEQLSSTLAKHRVTPSTE
VALLDDQGNVVAYPDSQKLLPEQRSARLVKANDLSPALAALMRGQTEGGH
LQAQGRSWIVASGHIAEGGPGGLQLALLVPEDELLADAYRLRWQGALITL
TTLLLCLPLGWLISRVLVRPLHALVQEADAIRSFDFDYPVSRRSPVLEVD
QLSISMARMKDTLASFFEINASLSAETRFDPLLQRVLFETVKIAQAQAGL
IYLCESKGTRLEPHGLIIDGQPQDMTQFPIGSRELADSRTPEWLSQLTHN
DSVVTTLGFDQAADLQSVLLVLDSPSAHLVGIRLRNRHNETIGMLLLFLV
DSGAEADLDKLSPDRIAFIQAVSATAALCIESQRLQNKQKQLLDAFIQLL
AGAIDAKSPYTGGHCQRVPALTLMLAEAAAASQDPRFAAYQPGEDEWEAL
HIAAWLHDCGKVTTPEYVVDKATKLETLNNRIHEIRTRFEVLKRDAWIDY
WRALALGGDEQPLAAEREAQLLALDDDFAFVARCNMGTEFMAEADQQRLQ
RIAQRTWSRTLDDRLGVSWEENQRQERTPAPSLPVLEPLLADKPEHLLER
SATEVMAADNPWGFKLQVPSHKYNRGELYNLSIARGTLTAEERYVINHHI
VQTIIMLEHLPFPSHLQNVAEIAGGHHEKMDGTGYPKQLKREQMSLPARM
MAIADIFEALTAADRPYKRGKTLSEALNIMAMMCRDAHIDPELFELFIQQ
RIYQRYAERFLTPQQVDPVDQDSLLKKAGLST
>PFL_4234 EAL domain protein
MIDGQPLACFQPFIDTATGRIAGVEALGRLRQDNGQLASVGPLFADPRTP
SSALRRLDRLIRDDALRRLHEAPADWFLSLNISPRWISRLRPGQPLPSLK
QLQQNRVDPRRIVFEITELGGNSQRLSEVVERYRQAGARIAIDDFGAGYS
QLDRVLALQPDILKLDMRLFQAAARGGPSSDVVKALAQMAEKTGCWIIAE
GVETEAELDFALECGSRYVQGFLFAQAEQQFYPSDAFVQPFARLRERYVR
HKLAERNRLMRMRLQLAELMNLLQAWAQAQAPISQLPRVEAFPWLLRFYQ
CDRHGTQLTPNLEWRHNSWQADSSYVGHNWSWRPYFYHLLAEGWEERRLT
LSNTYRDATSNQYCLTAGQFFDNGQRLLLIDIDAAGL
>PFL_0954 sensory box protein
MINAHLLQRMINASNDGIVVAEQEGEDNIVIYVNPAFERLTGYSADEVLY
QDCRFLQSGDRDQPGLEVIRQALRQGRPCREVLRNYRKDGSHFWNELSIT
PVFNDSDQLTYFIGVQKDVSVQVKAQQRLLQLEQQLAEVQAELAALKATS
GH
>PFL_4521 arginine/ornithine ABC transporter, periplasmic arginine/ornithine-binding protein
MKKLVLLGALALSVLSLPTFADEKPLKIGIEAAYPPFASKAPDGSIVGFD
YDIGNALCEEMKVKCVWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKS
VDFTNKYYNTPARLVMKAGTQISDGLAELKGKNIGVQRGSIHERFAREVL
APLGAQIKPYGSQNEIYLDVAAGRLDGTVADATLLNDGFLKTDAGKGFAF
VGPAFTDVKYFGDGVGIAVRKGDKADLDKINAAIAAIRENGKYKQIQDKY
FDFDIYGK
>PFL_5651 bis(5'-nucleosyl)-tetraphosphatase, symmetrical
MATYAVGDLQGCLEPLQCLLEQVAFDPARDRLWLVGDLVNRGPQSLETLR
YLYSIRDSLVCVLGNHDLHLLAVWRNVERLKKSDTLREILEAPDCEELLQ
WLRQQKLMHYDEARNIAMVHAGIAPQWSLKKAQKCAAEVEEALRDDNLFD
PFLDGMYGNDPAKWDSDLKGVTRLRVITNYFTRMRFCTSDGKLDLKSKEG
LDTAPPGYAPWFSHKERKTRDLKIIFGHWAALEGHCNEPGIFALDSGCVW
GGAMTLLNVDSGVRLTCDCDAQGRTAALSPDPLPAPAKR
>PFL_1879 CHASE domain/sensory box-containing nucleotide cyclase, putative
MPLHVVRPKILGFISEEVSAWLVAVLVLVAGGILTGLLAWSTYSLNKQQV
RQRFQLLAGERYSRIEERFQDQEQRLDGLRRFFVNSDLVTRQDFDGYAKP
LLRRTQAYAWAPLVSRAQRPGFEQSIRDQGLPGFSILQLNATGQMEPAGE
HDDYAPVLYSQTQSPLGSPLGYDLLAQPLRRATLERARELNGLAVSPPLQ
LVAVDQAYARGVLLAAPVRRAQDASGPQDRPYGYVLAIISLRQLVADGLP
VPASDNLSVRILDLSTEGQHEVLYESNNPPISSSLTASRLLRLADRDYQV
DIRPSAAFLHANHSALGSLVILGGMLSLLLSALLYVLVSQRQRALALVEQ
RTEELRSSEQALRGTHSQLRCVLNAATQVAIIATDLRGVISTFNAGAEQM
LGYSSSEAVGHLTLESLHLPEELESWAQSLTQRYGKAIPVSQAMLVEEGM
AGGHEAREWTLVRRDGSHLQVNMLATPVLDDQGLWIGHLAICIDITERKR
VHEALAARDRLLQRLSAHVPGGIYQFKLDADGHTSFPYASDGLREIYEIE
PQLLQQDAEAAFERIHPEDVERVRESIRVSAQQLSPWREEYRVCLPQRGG
RWMRGAASPESLRGGGVLWHGYISDISDLKRVEEELRALSVTDSLTGIHN
RRYFQERLQAEMHRLERGGGVMAVIMLDIDHFKRINDQYGHGVGDQVLRG
LCERIGRRLRRIDVFCRLGGEEFMVLCPDTSGQQALILAQELWHGVRSSP
IGPVESVTASFGIASWRAGEGADELLLRADSAVYAAKQAGRDRVLMEQP
>PFL_3324 response regulator
MEDPQPVEPGRRPRVLLVDDEESILNSLKRLLRPEPYDVLLANSGARALE
ILAEGPVDLVMSDARMPGMDGAALLARVREKYPAVRRILLTGYADLNTII
KAVNDGQIHQYLSKPWNDEELLLILRQTLEHQLAERELKRLQQLVLEQNQ
QLKASNASLERHVASRTAELQQTADMLDLAYEELKHSYVTATEVFSLLAN
LRLPADKQTNRKIIELVRACCKRYGLDEASSRDLTMAAALYNIGKLSWSD
AMLLAPADLLRHTDQARYRAYPEQSESVLMALEPMQDAARLILHHQERWD
GSGFPQRLKGEAIPWGSRLLKLAVDFIELQCGLILERHMNSDEALLFIRK
YAGRLYDPNLVEDFVQVCAAYQSDVTVDDPTVRVLGTRELQAGMVLRRNL
NADNGMLLLNAGKVLSEPLVQKLIAFEAMEGARYSIFVSVPDA
>PFL_5497 GGDEF domain protein
MDFVPKILGNVVLLLSAGLNWTAMRVFAGRRPHVPGLLAGAGIWLILCVV
PAFYQSMPVRVSVYSLLAAAYGVLTLLEFWRSRQQLEVAYMPAVVLTLLH
TMYYIVRAVVDQGVAMDQALKGYGAGVPLFSFMLFESMLYVIGIAYVTLC
MVKERVELRFKAAAFCDALTGIGNRRAFMVNGERMLIECQRRCSPMALLL
CDLDHFKRLDDAYGHQTGDQVLVAFSQVLAETLGTKDVYARIGGEEFACL
LAATDEQAAVTVAERVRQAFARLPLLEPGLLSVSIGVVSSETRGYDLPRL
LSLADEALYDAKHQGRNRVHTVSRSALELQPD
>PFL_0300 sigma-54 dependent DNA-binding response regulator
MSHPESLDPQLQVVLIDDDPHLRQALSQTLDLAGLKVLSLAEAQGLAPRL
ERDWPGVVVSDIRMPGMDGLELLNQLHAQDPELPVLLITGHGDVPLAVQA
MRAGAYDFLEKPFASDALLDSVRRALDWRRLVLDNRSLRLALSDRQELSA
RLVGQSAPMLRLRQQIGALAATRADVLILGETGAGKEVVARALHDLSGRR
NGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFL
DEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQAA
DQGRFRADLYYRLNVAPLRIPPLRERGEDVLMLFQHFADEASTRHGLPPQ
ELQPGHRALLLRHSWPGNVRELQNAAERFALGLELALDNSEPGTLAAAAP
SLIEGGLSEQVEHFEKTLIAAEMAQPHSSMRSLAEALGIPRKTLHDKLRK
HGLNFADGGANQPGDESE
>PFL_2364 sigma factor regulatory protein, FecR/PupR family
MSGAAVDPRVRDSAIDWLVRMQSGLMSAADHQALQQWRQASVEHEYAWQR
VSSLPLMLQPGANLLADATARRALQAAGADPQRRRQVLKCLLALGLLGGI
SWQGADSTLVRSALASYRTGVGERRHWALADGASLWLNTASAVNLDLSAR
QRSLQLIEGELALDTPAGSASLQLSTPDAVLYSRGANLLVRHDRLGTQVT
VLRGLVQVSARQHPAPLALQAGWQTRVDGRGAGRPSPIDTFLAQAWMRGI
LPAERMRLDQLLAELSRYRPGFLRCSEAVAGLRVTGSFQLDDTDAALALV
ANTLPVRIERRTRYWVTVVPA
>PFL_2252 arginine/ornithine ABC transporter, periplasmic arginine/ornithine-binding protein
MNKFALFGALALSLFSFTASADEAKPIRIGIEAGYPPFSMKTPDGKLTGF
DVDLGNALCEQMQAKCTWVEQEFDGLIPALKVKKIDAILSSMTITDDRKK
NVDFTIKYYHTPARFVMKAGTSIKDPLTELKGKKVGVLRASTHDRFATEV
LVPAGIDLVRYGSQQEANLDMVSGRVDALLADSVNLDDGFLKTDAGKGFA
FVGPEYNDPKYFGGGAGIAVRKGDQELAGKFNKAITEIRANGKYKQVQDK
YFDFDVYGE
>PFL_0493 methyl-accepting chemotaxis transducer
MPRPFNRTDGTAHSRRVIGWTNITNVCIQPSAAGATFQPLIPIRKRCSMQ
FWRRSIQWQLVLSMGSALLVSLLVVVAVYTVVINHLTQNYLVDKALPSSI
EAMRNDIERILAQPLTVARDIASNGMLRDWLAGGEDPAQAQVFVDYLEGI
RAENQAFTTLMVGTATNHYYNEKGLDRTLSRSNPKDAWFYSFIDSDKPRL
LNIDTDVATGELAMFIDMRVKKDGKLVGVAGLGLKMQALSQLIHDFSFGE
HGKVYLVRADGLIQVHPEAQFSGKRHLSEQIGESAAQAVMGHEGLASSRF
VRDGEDFVALSLPLRGMGWSLVAEVPEAQIYADARQTLWLTTGIGLAIAL
VCLLLVIWLARGLVRPVRQVTAGLVAIGSGGGDLTLRLDASRADELGDLA
RGFNRFLDSQHGMIGEVLATTERLRSSVGQVAAVVENTAERSGRQQEMTD
MVATAVHQMGLTVQDIARNAGQAADASQAARDEAQLAQGVVDGSIRHIES
MSGEIALAASAVSELAHQVASIDQVLAVIRGVSEQTNLLALNAAIEAARA
GEMGRGFAVVADEVRTLAQRTQASTDEIQQMIQSLKQGAENAVASMHAGQ
SATGTGVQSSQQTGASLTAITGQVEHISDMNQQVATATEEQSAVTEEINR
NVQGISDLARATAAEVQACREDCRTLQRLSEDLARQVGGFKLH
>PFL_1129 methyl-accepting chemotaxis protein
MKNWTLRQRILASFAVIIAIMLLMVVVSYSRLLKIESGEERMRNDAVPGV
YFSSMIRSAWVDTYLQTQEIIGLKQNQDISAEDKADFKAFEERLQTQMTN
YKQTINSREDQSEFDAFEKDLQEFNRIQAAVLDLHQRRQEAEAIRLFNEQ
LTPAWTAGRMKLNDIISENKAVADSATAAIDDAVAAAKVSMGVSLLLAVL
AAGLCGLLLMRAIMAPMNRIVSILEIMRTGDLSGRLNLDRKDEFGAVETG
FNDMMTELTALVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEI
GATSREIAATSRDLVRTMTEVSSAADQASVLAGSGQQGLARMEDTMHSVM
GAADLVNAKLAILNEKAGNINQVVVTIVKVADQTNLLSLNAAIEAEKAGE
YGRGFAVVATEVRRLADQTAVATYDIEQMVREIQSAVSAGVMGMDKFSEE
VRRGMAEVQQVGEQLSQIIHQVQALAPRVLMVNEGMQAQATGAEQINHAL
VQLGDASSQTVESLRQASFAIDELSQVAVGLRSGVSRFKV
>PFL_2198 amino acid ABC transporter, periplasmic amino acid-binding protein
MNNVLRFAGACALVIAASTAQAETLKIATEGAYPPFNYVDSNNQLHGFDV
DIANALCKQMKVECQIVAQDWEGIIPALLAKKYDAVVASMIATDERKKKI
AFSNHYYRTPLSVAVAKDSDITDAQTNFKGRTVGAQASSTQAIYAEDHYG
PAGADVKFYPTLDEANSDLAAGRVDGVIADKFPLLAWAESTGKDCCKIIG
DVNGTTADASIAVRKEDNALRERLNKALDEIVADGTYKQISSRYFAFDIY
>PFL_5515 conserved hypothetical protein
MLVALSCCSVRAAEPQAQPRHIRIASEVWSDYTEANGEGLGWDILREVFE
PLGVTIERCSVPYTRSVGLVQRGEVDAHMGAYRDESPGVLYPHWNYDTDH
IYALGLASNPELSLATIASYRLVWVRGYKYQDYLPNIRRYNEIRRRIGIL
PMLLYSRADYYIDAQTEIDYVLGQASDPSQFKRTHLTELPLYLGFASNPR
GREMRELYDQRMAQLVSTGRLRPIFERWKQPYPFDGSP
>PFL_0989 sigma factor regulatory protein, FecR/PupR family
MNHRTSICPTPAQEQAALAWLSLLHDQPSSGDQATFSQWLQADPAHIEAY
AQAQVVWELSEQPARTLADEDAFALHGLLRSMDAARGRARRRWSAGLALA
ASVLLAVALGAGWQPGRWVDDLGADYVSAPGQVRTLTLADQSQVTLDADS
AIAVDFSRGERHVQLRRGAGFFSVSHTGEPFVVDAQEGEARVLGTQFEVR
LQPGGAQVTVLSGRVGVTPAKGAAQQVLGAGQQVAYGHGVAAPLHAVDSE
AQLAWRQGWLNYYHAPLAEVVDDLRRYFPGRILLLNDELAARRISGSFSS
KDPQAVLDSLQAVLGFQQHRVLGRFIVLR
>PFL_0128 methyl-accepting chemotaxis transducer
MNLKFSHKILLAASGVVVLAFALFTLYNDYLQRNTIRQNLESSIQQAGEL
TSSSVQNWMSGRILVLENLAQNVAHQGQNADFPGLVDQPAFTSNFQFTYV
GQANGTFTQRPDAKMPDGYDPRQRPWYKQAVAADKTMLTPPYMAAVGGLV
VTIAMPVKKQGELLGVVGGDLSLETLVKIINSVDFGGLGHAFLVSADGQV
IVSPDKDQVMKNLKDIYPGANVRIENGNQEVVLNKQERILSFTPVTGLPN
AEWYIGLSIDKDKAYAPLSQFRTSALIAMFIAVAVIAVLLTLLIQVLMRP
LITMGRAMQDIAQGEGDLTRRLVVESKDEFGELGSSFNQFVERIHASISE
VSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEI
ARNAADASQHASGASEQADDGRQVVEQTIQAMTELSQKISLSCTQIETLN
ASTDNIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRN
LAHRTQESAEEIHKMITSLQVGSREAVSTMNASQASSEESVEVANQAGAR
LVSVTQRIGEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGVANL
NETLKDCDALSQQASRLKQLVDSFKI
>PFL_4014 sensor histidine kinase
MRSIQRRLSLGLITVMVVVGLVLAQTSLWLFEVGLQRYLEAGLRNDSESL
LLALVRGPQGLQLDERRLSPAYQRPFSGHYFRIDFADVHWRSRSLWDQEL
PQLERAGLQGNLQLGPEGQQLLVLRSDYKRLGQSISISVAQDYTPVRESF
QRMRQIGLGLGLAGLLLILLLQRLTVRRALRPLETAREQIAQLQQGQRSQ
LDAQVPVELEPLVAQINHLLAHTEDSLNRSRNALGNLGHALKTPLAVLLS
LASSPRLDGHPEVRRMLQEQLEQVQQRLNRELNRARLAGDALPGVLFECD
AELPGLLATLNMIHGQHLELSYQAPPGLRLPWDREDLLELLGNLLDNACK
WADAQVRLSVEERPQGFCLAVDDDGPGIPEARRDEVFGRGTRLDEQTHGH
GLGLGIVRDIVDACGGTLNLGESEWGGLRVEIELPRR
>PFL_1107 DNA-binding response regulator, LuxR family
MKATTNNKLRIILADDHPIFLIGLRAVLEQDDSLAIVGEASSPSALAQLM
QEIECDVLVTDFMMPAEQQNDGLRLIEQLRRRHPDLPIVVVTMLNHPGLF
RSILDLGVTGLLSKASLADELPTAIARARQHKPYIAQAIKQALSLAGEVG
PDRLVSSDQLSPRELEVIRLLAAGHAVGEIAAQLNRSKQTVSAQKVSAMR
KLGLSSEAALYIYVQEHGLS
>PFL_3920 conserved domain protein
MPPVSPSFSELKMERIQVHDCNANEELAQAPTCIARLGHPSGLPVMAGSL
ETAQELDLLHKIDCTQIQDFLIFHAMSSDQFRQLLSHDGPANAYGLASGC
>PFL_5701 response regulator
MLEPDLPPQRVLIADDDKDARELLAEILGLDGIRCITAASGKAALELLES
NKSIGLLITDLRMAPCNGLDLIRQVRESERAALPIIIISGDADVRDAIAA
MHLSVVDFLLKPIDTTKLLALVKHELGMVL
>PFL_4203 chemotaxis protein CheV
MAGILDTVDQRTQLVGENRLEILMFRLAGRQLFAINVFKVQEVLQLPKLT
LMPQRHPFVCGVVNLRGQTLPVIDLSQAIGMRPLVPGPNSTIIVTEYNRS
VQAFLVGGVDRIVNMNWEAIMPPPTSAGRQHYLTAISKVDDQLVEIIDVE
KVLAEIVPYNAKVSRDKLEDPVLERARGREVLLVDDSNVALSQLRDTLGQ
LGVKMHIASDGLKALNMLKAWADTDVVMTDKLLMVFTDAEMPEMDGYRLT
TEIRNDPRLRGLYVVLHTSLSGSFNESMVKKVGCDNFLSKFQPDKLVDVV
RQRLMLDEADA
>PFL_6175 conserved hypothetical protein
MRPVLPTLLSGLLLLAGHASAAVPSTLATCTRSATLLACVDPQGNAYSVA
TAGSTTYLRGFEVIGKRYWAQTNSRYGQLTFFTGLASDGEAWVGYSQRVG
WTTRNRFSSSGGSRGQFTCSRISGC
>PFL_3269 DNA-binding response regulator
MPNILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVI
LDLMLPGLDGLQVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYV
TKPCEPRVLLARVRTLLRRSSLSEPQSASDQILMGNLCIDLSERTVTWRE
QLVELSSGEYNLLVVLARHAGEVLSRDQILQRLRGIEFNGTDRSVDVAIS
KLRRKFDDHAGEARKIKTVWGKGYLFSRSEWEC
>PFL_2638 sensor protein RstB, putative
MLRLFLGLYLFLALGFAGAMTAVQHIFINYLAADLIESYNRDAVRGPAYS
LSEQLRPFDEAGRQQQLEQLKPHYGLLLKLVQADDLDLSVREQALLDSNQ
LVVREEFTEFIGSIDGGKQLLSIKLPEDPPLTLLYNIAAYALLGALLAIV
LYFWVRPHWRDLERLRLAAERFGDNDLGTRLHLSRRSNIRDLAQHFNRMA
ARIEGLIANQRELTNAVSHELRTPIARLSFELDQLQQQPDPDENRELIAD
MYADLGELEEMVSELLSYASLEHGAATINRENIQAQSWLDSVVGSVALEA
EAAGVQLLIRSCQVEYVRIEPRFMARAVINLLRNAIRYADRRVEVSLVRL
EHGYEVRVNDDGPGVPVDGREKIFEPFSRLDASRDRRTGGFGLGLALVRR
VSQWHGGKVEVADSEWGGASFRMTWAHLD
>PFL_2182 methyl-accepting chemotaxis protein
MNVRTMNLAPRSAAFFSLIVLVVFALGIVAVLQMGKLRDAEQDVETNWMT
SIREIGKMKTSVLRLRLESIRITVTTDEQQRQTRIASLSGYRSNLQNTIN
QYEPLITGPAERELYQAVATDVQAYFKLVDELEPLLRSGDNAAAITLINT
RISPMTNAMQEKMDKLSDFNDEGARQAGITAESVYSSGLTLVLVLMGVTV
VLTVVLAAVLTRSITAPISDALAVAERIAGSDLSREIGVSGRDEAGRLLA
ALAQMQTNLRETIAHIADSSTQLASASEEMTAVTEDASRGLVRQNDEVSQ
AATAVTEMSAAVDEVARNAEAAAQSSRESMEFTRSGIENVAQTLKAIEGL
AGNVASTGEQVKALSSRAQDISKVVEVIRAIAEQTNLLALNAAIEAARAG
EQGRGFAVVADEVRALAHRTQQSTQEIEQMISAIQADSTHAVSAMNVSAE
MASSSISVAQNADLSLKQIAQAITQINERNLLIATASEEQAQVAREADQN
LTSIRELSIQSSAGASQTASACGEMANLAIELNRLVARFKV
>PFL_2392 sigma factor regulatory protein, FecR/PupR family
MTEHLSALPGDAIREQASYWFTQREAMTHNLPLRQRFEQWRNSHAQHAEA
YRALEDLWQASAFEQALEQLALGLDLPAAPAPATPRRKRHRTRWLAAAAT
VLVMLGAGWFGDLPLRLQADHLSAVGELQRFDLADGSHIVLGSDSAISSD
FSNARRRIQLLRGELYVEAFHDPSRPLTIEAGSATVTVVGTRFSVSRQAD
GVTVAVREGRVRLADENGQQSLLQAGNWQQLQGHRLLPLNPEGSERQLSW
INGRLSFQDAPLAQVLQELGRYHRAPILLFNADAAQQKVSGNYQLDDPQA
IVRALSKVTATELTRLPGGILVLR
>PFL_2163 sensory box histidine kinase
MPDSTHLRHWLRLQREGQLPDSPWLGHDPQPSLLLDAQAQPLDLNPALRQ
WLDDAATGDLAALLPVNHPALVRACLEQQRAIEQVEAQWGERILLWSFIP
DPHRQRVLARCQEATDQVRAERESAKARRLYRLITENTTDLISRHTPDGS
FLDASPASWTLLGYWPEQLRGRLARSLFHSQDLAGLMQRTRDALEQDGYH
TMTYRIRHRDGHYLWFETACRGIRDTYTGTVVEVVAVSRDITARVQAEEN
KRRLAEVVEANPDPVLFIQPGGAVTYLNPAARRTLGLGDGQAMPPLAAIL
SAAVLDSLQREGWDRAEHSGRWNIEARLQPPAGGASVPVSLMLLAHRAAS
GERFYSLVAHDQSERELREAQQRHHQDELAHTARLVTLGELASGIAHEIN
QPLAAVVNYANASQRYLQALGTQPEAARKVAQGLERIAEQATHAAEVIKR
LRAFLRKGGRRVQALDIAEVARETVRLCAWEAQASQVTIDLQLADNLPPV
YADRVLLEQVLLNLLRNAIEANREVHGQQGSHIVLAAEATAEGGVQISVS
DQGPGVCAEQLPQLFTPFYTSKANGLGLGLSMSRSIVEGFGGDLQAQPQA
VGLRMCCRLPASAPADPSATSQATSPATTGARQ
>PFL_1134 methylesterase, CheB-like
MKIAIVNDMPMAVEALRRALAFDPSHEVVWVATNGAEAVKYCAELTPDLI
LMDLIMPVMDGVEATRRIMAESPCAIVIVTVDRQQNVHRVFEAMGHGALD
VVDTPALGAGNAQEAAAPLLRKILNIGWLIGQRGSRVRSAPQPLRSGAPR
QSLVAIGSSAGGPAALEVLLKGLPKDFAAAIVLVQHVDQVFAAGMAEWLS
SASGLEVRLAREGEPPQSGKVLLAGTNHHIRLLKNGTLAYTAEPVNEIYR
PSIDVFFESVASFWNGDAVGVLLTGMGRDGAQGLKLMRDQGYLTIAQDQN
SSAVYGMPKAAAAIGAASEIRPLDKIAPRLLEIFAK
>PFL_3959 protein kinase domain protein
MLTLFMDTLAQLRAGQLAGIKRLDLSCGLTEFPREIFDLADSLEILNLSG
NALSSLPEDLHRLTRLRILFCSDNRFSEVPACLGQCLQLSMIGFKANRIE
RVPAAALPPQLRWLILTDNRIAELPEELGQRPLLQKLMLAGNRLTRLPES
LGQCHRLELLRIAANRLTELPPFLLALPRLTWLAYAGNPLESEADATALA
STPSIPWSELTLEQRLGEGASGVIHQAQWQPAGQPPRAVAVKLYKGEMTS
DGSPLHEMNACISAGLHPNLIRVEGRILDHPQGQNGLVMQLIDKSFANLA
ALPSLDSCSRDIYPDDARFNADVTLGIARGIASVGAHLHAQGITHGDLYG
HNTLWNAQGDCLLGDFGAASFHAQDDTVQSRALQRLEVRAFGILLEELLE
RGDGSLSLEQRQKLAALVQRCCQPEVLARPGFTQVCEELAGL
>PFL_6079 Ser/Thr protein phosphatase, putative
MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGD
YVSSLIVDSLRAVPAADSLDDYVAALRNGLAAVNAAVREETANRGVTMMG
STVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLL
SEAEARVHPRANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTA
EDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIKAAGH
>PFL_2211 sensor histidine kinase
MSALWRINLWVTAFFAVVTLACAALLLHQAVADVERELQSAEAVVEYLSD
SAERNPAGLQPHLTQSLRHVRVHWLAPDEAVRMPEQAGLDAWLGRQLFSE
RRHNARELDLGDGRRVLIAVDARDEIDEVWDSLQQLLSLCGLALLLSLLT
IRWAVRRGMGLLDDLLRALQQVSGGQLAVRLREAGLPEARQLAGHFNRMT
ATLEQTRADNAQLTQALLAVQERERTYLAQTLHDDLGQYLAGIRAQACLL
RMVSNQPTVVEQTAQALELNCERLQQGFRALVQDLYPVVLQHLPLAEAFG
LLVSQWQDSQGIDCQLRVGADLPALPGASKTHLYRLLQEALTNVARHADA
SQVRVRLQRSARGLRLLVRDNGCGARQPQRPGVGLHSMAERARSLGGELH
ILSRPGAGWALALNMPLNMPMEA
>PFL_4888 sigma-54 dependent DNA-binding response regulator
MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLV
ISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDY
IAKPFDIDELDITVSKALQFRDILKDNQRMRAELAEHQQIDSLVGDSPAF
RRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNC
AAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLA
LQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDL
YYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQA
MASYAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSA
AISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFW
YRLKKLGIQVDKIVR
>PFL_3196 DNA-binding response regulator, LuxR family
MEKLKVVIADDHPIVLLGVRELMERDERFEIVGETLSSQGLIQKLESCQV
DVVITDYNMPGDSPYGDGLKLVEYLKRNFPHVQILILTMISNQLILTRLR
ELGVVGVIQKSQLHEEIQIALKAIAQKAVYRSLEPAPNSVLESNVAIDER
ISTLSPKEFEILRLFVSGKSVSEIARSQNRSAKTISAQKISAMRKLEVQS
DQDLLTYCIGRNIFN
>PFL_4895 response regulator/HD domain protein
MGELNVATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQ
LLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIA
KAINEGEIYRYLSKPWDDQELLLALRQALEHQHSERERLRLQDLAQQQNA
ELKALNTLLEKRVAARTSELQQTADMLDLAYEELKPSYATGAELFSLLVN
QRLPADKQTNRRIIELVRAYCKVQGIDPGAQRDLAMAAALHNIGKLSWSD
SMMTSPADLLHHHQRERYRAYPAQSESLLMTLEPVQDAARLIRHHQEHWD
GSGFPDHLKGDAIPLGSRLLKLAVDFIELQCGLILERHMNSDEALVFIRK
YAGRLYDPDLVEGFIQVCAVYLSDVTLGDPSVKVLSTRELAAGMILARNL
NADNGMLLLNAGKVLNLPLVDKLIAFETMEGARYSVFVKLPQEQQARA
>PFL_1965 DNA-binding heavy metal response regulator
MKLLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHQALTGDYALLIL
DVMLPGRNGWQILQAVRSAGLEMPVLFLTARDAVQDRVHGLELGADDYLV
KPFAFSELLARVRSLLRRGSAVAQETSLQLADLRLDLIRRRVERGSQRID
LTAKEFALLEMLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRL
KIDDDFPNKLIHTVRGMGYVLEERQA
>PFL_5115 conserved hypothetical protein
MHVGVLGLSLLATGVMAAVSADEAAKLGTSLTPMGAEMAGNAAGTIPAWK
PLATNAGTVDSKGFLSNPYGSEQPLFTITAQNVEQYKDKLAPGQYAMFKR
YPETFKMPVYPSHRGATVPADVFAAIKRNATSTNLVSGGNGLENFETAIP
FPIPKSGVEVIWNHITRYRGGSVTRLVTQATPQANGSYSLVYFQDQFVFR
DKMKDYDPKNPGNILFYFKQKVTAPARLAGGVLLVHETLDQVKEPRSAWV
YNAGQRRVRRAPQVSYDGPGTAADGLRTSDNLDMYNGAPDRYDWKLEGKK
EMYIASDSYKLDSPTLKYADIIKAGHINQDLARYELRRVWHVVATLKEGQ
RHIYAKRDFYIDEDTWQAAVIDHYDGRGQLWRVAEAHAENYYDKQVPWYA
LETLYDLQSGRYLALGMKNEEKQAYDFGFTATTSDFTPAALRQDGVR
>PFL_3245 conserved hypothetical protein
MPGNPQPNLWHPCPPCACCAQQRLHGDKRLNRASGRRSSDLSAISRCSTP
SPITWTYLRGHCLSTSSALLSEKAATGIEGLDDILSGGLSRSHVFLLEGE
PGTGKTTVALHFLRAGAAAGERCLYITLSETERELRQGAQSHGWQLDENI
HIFELIPPESLLNAEHQQSLLYSSDLELGEATRQIFEVVERVKPTRVVLD
SLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLDDLTTESLDKTVHS
VAHGVIRLEELTPSYGAERRRIRVVKYRGQKYRGGFHDFTIMGDGVQVFP
RLVAAEHRGQYQRLTLTSGITEMDALLGGGIETGSSTLILGPAGTGKSLI
SMIFAAAAVARGEKAALFIFDEELGLLFERMRNMGIDLKALQASGNLIIE
QVDAAELSPGELSHRVRRCVDQERIKTVVIDSINGYQAAMPEENALVLHM
HELLLYLNRQGAATFMTVAQHGLVGDMQAPVDITYLADTVVLLRYFEALG
KVRRAISIIKKRTGSHESTIREYRISARGLTIGEPLEAFQGVLRGVPTYL
GESKPLLRDEGQ
>PFL_4474 sensor histidine kinase
MNSIFLRIYGGMCAALILVALLGVLALHLLNQVRSEQYRERLAHGTFSLM
ADNLQPMSEIERRRALAVWERLLGIPLSLKTFSQTDLDSSQRGRVLRGQA
LVEQTGPFAARVYRLVSEKEQLLLSAEVQQISEQLARATIYLLADELVRY
PVAEQPQRLAALKEAKGFGFDMQLSTLDAADMDEDQRRRVAEGDTVMALG
KGGDSIRVFAGLVGTPWVLEIGPLYQMNPYPPQWLVLIAVLGLSLIGLIV
YLLVRQLERRLSGLESAATRIAKGSLETRVPARGADSVGRLAAAFNGMAE
HLQRLLAIQRELVRAVSHELRTPVARLRFGLEMIASASTDQARQKYLDGM
DNDIQDLDRLVDEMLTYARLEQGSPALNFQRIDLDALINQVISELAPLRA
NLKVRRGLCLSAAECDGAWVEAEPRYLHRALQNLVGNAMRHAESQVTVSY
QVGQLRCRVDVEDDGPGVPEHAWEKIFTPFLRLDDSRTRASGGHGLGLSI
VRRIIHWHEGRALISKSKNLGGACFSLSWPRHQEPR
>PFL_3285 Ser/Thr protein phosphatase family protein
MLDPARSYDLIGDVHGCALTLEHLLDRLGYHKQAGVWRHPSRMAVFLGDI
IDRGPRIRESLHIVHDMVEAGQALCIMGNHEFNALGWSTPAAEGSGKQFV
REHTPRHARLIHETLTQFEQHPGDWHDFLQWFYELPLFVDAGRFRVVHAC
WDAGLIAPLRQQYPNGCIDREFLQSAAVPDSFACTAFDRLLRGTDMRLPH
GLTMTSGDGLTRAFFRTKFWEDDPQTYGDIVFQPDALPEPVARTPLSPAE
KNSLLRYGAEEPMLFVGHYWRSGKPAPIRPNLACLDYSAVLYGKLAAYRL
DQETRLDPNKFVWVDVERPEVVR
>PFL_3314 sigma factor regulatory protein, FecR/PupR family
MDPRPGGRLSHACLQQAAHWYVQLQDQGSSDEQRRQWQDWFEQSAEHRQA
WSYVERVSQRLLPLQEANTRPSASRALSAARHPVLARRQVLGALLLAGLG
WGTWRNSPLPQALSRWRADYATGTGEVRDTLLSDGTRLWLNALSAVDVRY
STEQRLLALHLGEILIDTAKDPRRPFLVQTEHGRLRALGTRFSVRCGASD
SLLNVYAGAVEVRSASGLQVQVVNAGQQLRFDGRTLGPLQAASAAREAWS
HGLLLADNLPLEQLLEELGRYRNGHLGCDPAIAQLPVMGSFPLHDSDQAL
ALLEAALPVRVKRLASWWVTLEPRT
>PFL_4492 hypothetical protein
MAHNSSAITGIELEQFMDRLEAQQQEQETDALLAQLQAQPLQADSLASID
RLHTLWMQAGDSAAARAVIDQDGDALVQAAPEPARAELMMNLAILRLRVA
NYLDDEPTLIEVLGQLEQMATQTLDFNVEHYRRYRIFDDLERASCEIALK
TIEVRYALTLGNPARAALRAWDAADQYQRRARVLAHHDRNEEARSAALEA
VNAVRTAGPDQDIDEGDWLWLGNSLIEIIPLRLALFEQPIAQLTAGRSLP
QRREWEVRTARLAARALHAQGDLAGALNICNAAALSLDSDGGNNFIEYEL
PWLMEAGRIDEAGFRAFIDVYDRQTELWPATARLVLDRLQDPDERSAWWP
ICVMRACITEEVLQSFLQALPSIETSESATTPLLAALSLAMEDLQAGDAL
YTEARAEAVRRAPDHPWITRLAAVHDAEHGLIDAATEASLLQNAIQAGRM
QDNRSAFSLFAARINSQGIIEALKAPKPVLSCGKHAYNYALGIEDLAEAE
ADKLPPDARDQAYSLLREAQRDAYEQGQAHMERYFASGSGHPYDACAHLY
SMLCNNLAINYRYYNPIRYEDAIELHTRGIAASPFAEHYNGLLSARISLE
DLPGIIDAAEQLWHYSAEFGYSRHNPDEYVASVAYALYKLDRDNEILIWL
ERLLKWQEEQGVSDQQLDSSALFARIQVARYLAHAHPDNADSLWQRYQPA
VLSLNEVSVMSASVDFLKARGRAAEAIDYCARTLALCAPDDDYDIRCRAR
IEQILSELQAPAQPAGKKNWWQIWK
>PFL_5389 methyl-accepting chemotaxis transducer
MTLGNLSIAQRAVISFGVIALLVLLQGLFALKQVAEVRATGQHTENISLP
STRYLGEVRDYVLSIRVLSLRMALNREPQVLESTIARLHQVQAWLDQALA
RFAPLVGDHNRVPYEAFLATVKSYQQALAQYEALSRDNRSSEMTALLNGK
IQDYSTQTGDQFAELMNLTAEEVSQSAQHADALYTQVKITVIGALIAVAL
LTLCLAWLLIRSIVVPIRQAVSVAEQVAAGDLGRPIHSEGSDETARLLKA
LARMQASLRETLQLISSTSTQLAAAAQQMSQSTYQDSSRLQQQHNEIEQA
ATAVNEMTAAVEEVARNAVSTSDTTRQSTAQATQGQTRVTQTLDAIQAMS
SDVGIALQQVQTLAEQSREIGKVLDVIRAIAEQTNLLALNAAIEAARAGE
AGRGFAVVADEVRALAHRTQQSTQEIEQMIGRVQGDTDSVVQSMHGNSQR
VAQTLSIAEQAGLALGEITRAMEQIHERNLVIASASEEQAQVAREVDRNL
LNIRDLSLESADAATRTNATSQELSHLAAGLQNLVVRFRF
>PFL_3852 DNA-binding response regulator QseB, putative
MRLLLVEDDRALGQGIRVALSAEGYTLDWLQDGASALHALRTESFDLLLL
DLGLPRLDGLELLQQLRAAQQDLPVLILTARDGTAERIAGLDAGADDYLV
KPFDVEEFKARVRALLRRSQGRAQPLLEHAGIRLDPANQQVQYQDNEVVL
TPMEYQLLHQLMVRPGKVVTRERLSRALYGWQDRVESNTLEVLIHNLRKK
LCSELIRTVRGVGYVLALKP
>PFL_6130 conserved hypothetical protein
MDNRFSQTSAIPEAPQSMDPTHTQALQQLRKLIPIGLRHAQALLARCANN
PQQAAELYKAELLQVLVDKSGLPAEHAREQLHAAGYDLNRALHAIEEARF
TLTQRILRKHHRDKGQALDLIAQAIETAEQVPRQYWLDFQRLEALAPALR
CFMVLHEWLAYEGWEGFDSALHFHLSQAIAQFRLLHLDALADTLEQADQR
QQQLRDALAESENSIDLAMRINQDPFFNRCQDHFNQQRPQLDERLYQWVE
QHLEQFPA
>PFL_2150 transcriptional regulator, LuxR family
MNSQILFPHIGKVIASTGSRNFPRMLHDLILTQLAVDATHITQLRADPEQ
AIGRTGNTLMQTRHPLYSDAHASNDPLLLTGFPEQPGEPAPGPSLQRQRG
HADPAQLHLTGRKDSYHYVLSVYRSSQDQSFSPQERLLLEDISPLLLPMV
EKHISALQPRGDAAEQDSAAIEGLANLRLRFAARLEQSGLRLSNRELEVC
VGLLAGRTAPQLAEQLKLKVNTVESYLKRAAIKLGISGRHSLLRWMYSPE
EQAPHSSETPTA
>PFL_2652 conserved hypothetical protein
MSSLERAIALAAQAHAGQVDKGGAPYILHPLRVMLRLTHPEARIVAVLHD
VLEDCPITPEQLRGEGFSEEVLAALLALTKVAGEDYPAFIRRAGANPLAR
QVKLADLAENSDLSRIPEPGAEDLRRLEKYRQATDYLNSLACD
>PFL_4206 DNA-binding response regulator, LuxR family
MTCNLLLVDDHSLIRAGVRALVMDIPGYAVIGEADDGSFLLEMVERLHPD
IILLDLSMKHTGGLDALRRLKALHPQSKVLILSMHTDPALIMQALECGAH
GYLLKDTTATELEHALQALRNNERYLSPAIAHTVINQALTRAQKQPPPPE
QNHNLTARQLEILRLIVRGKSTREIALGLGLSIKTVETHRSQIMKRLQIF
DVAGLVLFAVRERIISLDD
>PFL_3195 sensor histidine kinase/response regulator
MKESSTLLQNLARSLPRLNMGILLGLALLLFATLYWTLERLFDEQNSNVR
LHFAQLMENIQEQELFLKRLAARHSIDALSLDAPHHLNLQAFPPTAGQQS
PFATPFSLSLSPQQPAAGELPRVFALGLQLSSFYSAFWSGSQHVAPRTFV
FKTFGHFDISHPEGNTAPDIGVADQVLHQQLVKSDGFADHQIHWQQYRPP
ASEALPTRFLAYINLHEPAPPLDVQGGNDWSVVASLLSLDDLNHLEHTRH
WSIYDDFTLIEPSGTALTGDPAPADVLGEGLNFGLQGMIVKVTSQTPQLW
TGLYAISYRNYLDYALWAMLSLLALGVGSIACGWAASRWYRNKVVVPAQR
AQQCLNESEDFNRVVIDTVPSGLCVVSRDNLQVILQNRQAEQWQGTAQLL
SRLAQDRSLIDGGETSLDIDGRYLQVEFVSTRYQRQDVLVCTFNDVTRHV
EDARALDRARRSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLGLTRL
DSRQSDYLQTIQRSSSTLFQLISDVLDVSRIEAGQMSIDPLEFCPLDMLE
DVLHAHAASAQRRGLLFYACIDPNLPDLLLGDAARISQILNNLLSNAIKF
TESGRVVLRVRLLELRDQQARIEWQVTDTGIGISAQQQPQLFVPFFQVRD
ASNEAGAGLGLAICERLCQMMGGQMQVTSEPGLGSSFSLRLTLRCLPGGL
PPLLPWPEGSPVYVRAPVPELLKNTCDWLGRLGVPAHPPPPGWSDEPQTG
VLIDMLPRDGLASWPGPCVSAVSGGGSGRLPQATSWQVDAHDIRAIAQAA
VLAHQGLPLYQAQHRAGRMGQLNLRILVAKHSPINQAIIKEQLQALGCQV
TLSANGKQALEHWQPQRFDIVITDVNMPLMNGYELARELRRRDPQLPIIG
VTANALREEGIRCLAAGMNTWIVKPMNLQTLRGHLSKLCPTSTATAAPSI
PPAAPSRPPPDTAQGDRIQVTEKMRPLFLSTMHEDLRRLAEALDSGAGKI
AAARLHSIAGAMGAVQAAPLAKACAELECRLLEGALTADLQAQARQLMQR
LSRLLLPLE
>PFL_4205 sensor histidine kinase, putative
MKPGIQRAPFPKQASSSILDRALRSEHPLAPSAMYASLKSFFSWPPSRDH
LRWLSLLLCSCSTLASVLVYWLGRPLPLGLLVINVAALACIWMQYGYSRK
SIRFQPQELAERLLEVKENERHRLSRELHDDIGQLLTAAKLQTDWLKRRL
PDELQEHCAVLGTTLEETLAKVRDVSAILNPRQLASLGLEASLRAHLLKT
LENTSVHWSLECHQRLAGIPEEMAVAAFRITQEAVTNILRHAQAKNLLVR
LQRLPEGLSLFISDDGQGFAPASDPGAQGQRGMAGMQERISQLGGLLKVT
SEADQGTQIEALFPWAPRTLERASTNKVLH
>PFL_4482 chemotaxis protein CheV
MAGVMDSVNQRTQLVGQNRLELLLFRLDGGQLYGINVFKVREVLQCPKLT
LMPKSSPVVCGVANIRGATIPILDLAMATGSGGLQDQSNPFVIITEYNTK
TQGFLVRSVERIVNMNWEEIHPPPKGTGRDHYLTAVTRVDNQLVEIIDVE
KILAEVAPTSEAISAGVVDVETQHKAVSLRVLTVDDSSVARKQVTRCLQT
VGVEVVALNDGRQALDYLRKLVDEGKKPEEEFLMMISDIEMPEMDGYTLT
AEIRNDPRMQKLHIILHTSLSGVFNQAMVKKVGADDFLAKFRPDDLASRV
VDRIKAADHS
>PFL_4691 ultraviolet light resistance protein A
MYSIWKSCVMSFSILGPIAEGGRKLPLCLFRVPAGFPSPAADHIEQQISL
DQVLNIRAPHVYLVSISGESMQGAGIFDGDLAIVDRSIEAMHGHIVIALL
NNDPVCKRVCLRGKDIVLLSENPKYPPRYVLEGDELTIWGVVTSSVRSHV
>PFL_5779 response regulator/sensory box/GGDEF domain/EAL domain protein
MECVQPEPAEGHSTLLIVDDYPENLLSMRALLQRQDWQVMTAASGVEALG
LLLEHEVDLVLLDVQMPGMDGFEVARLMRGSQRTRLTPIIFLTANEQSQD
AVIKGYASGAVDYLFKPFDPQILKPKVQALLEHQRNRRALQHLSHDLEVA
RAFNASVLDNAAEGILVVDEGGCVRFANPAVSRLLNAQVKELEGSPFLDY
LQKPHVPDWSGSELYACYRRGETYRLHDAQMRTVPGQLISVALSCAPLPS
DQKAMVVTLLDMSEVRHLHQQLEYQAVTDPLTGLLNRRGFYQTVENILLR
SDRSGKSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLKDCLHSFDI
LGRMGGDEFTALLELSFPEQAAKIAEKLIERLSINQQIDGLEVVLGASIG
IAIYPDCGSNLDGLLRAADIAMYEAKRAGRQQYRYYDHEMNGRARSRLML
EESVRSAVERKEFTLVYQPQVAIADGRLRGFEALLRWRHPSVGDVPPGLF
LPLLEEARLISRLGSWIYQQGAAQRKDWEQVFSPDLVLGVSLSATQFNMP
NLVAELRQVLSRHGLQPRQLEVEVTEAALTQNLDDTRKQLQLLRQLGVRV
ALDDFGSGSCCLAYLRDLQLDTLKLDRHLIARLLTSPRDAAIARCVIDLC
KQFDLLVIAEGVETLEQYQWLKANGCEYVQGFLVARPLTASIASQFAQPF
DWSALQA
>PFL_5705 sigma factor regulatory protein, FecR/PupR family
MTPMSSKPVSAQVLDAAIAWQLSLDGGASAVEREEFAKWHAAHEEHARAW
RQLGMLDQRFGVATGPARNALLQSREGLRRRVRKLGRGVASVVLFGGLAL
FAGERYLPMDYWLADQRTATGEQRTLRLADGTVINLNTHSALDVRFDEKQ
RRIVLQEGEILIETGHNDSRPFIVETRDGRMRALGTRFLVKREDQGTRLG
VLQSAVAARPQAGQDEHVFKEGQQVLMRRDGLGPLQALNLEADAWTRGML
VVDNARLGDLIDELGRYRRGHLGVAPELADLRITGSFPLQDTDLALNALL
PTLPVKIERHTPWWVTVVAKADAKH
>PFL_5046 aerotaxis receptor Aer-2
MPSAAFAHMWRTLKRGRSWMGMVKNRCKNGDHYWVSAYVTPVTRDGQAVE
YQSVRTKPSVRQIEAAERAYAQLNGAGPSWWSLLPVISLRLRLWASISAG
FIGSYGVSVWLLPESWMVQGAVMAMGWCLSLTAVGVQARPLDRLAERARQ
IGDNPLSQGIYTGRTDEFGRIEFALQMLEAQVGAVVGRIGDASQRLEGHA
AELVEHLHSSHNSTLEQQAETDQVAAAIHQMAASVAEVATHAQQASVAAD
QAESETREGHLLVGESRSAVLRLASELERATEVIHQLESHSTDISGVLEV
IRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRGLAQRTQDSTNEI
QRMISTLQMGARNAVEAMQHSSQHLESSVDQAKRAAVALDGISQRVNQIT
EMSLQIAAAVEEQSAVSEDINRNIIGIRNACEATVSAGQLSHVNSGDVAG
LAGDLRQLALEFWHKRG
>PFL_5309 sigma-54 dependent DNA-binding response regulator PilR, putative
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFD
LCLTDLQLPDGSGLELLRHIRQSHPNLPVALLSNGACAQASAGALQAGAC
QLLHKPLDLKQLRAWVGASLKLATDCATDDPARQLLGDSAPMNALRRHID
KLAHSLAAVYISGESGSGKERVARLLHQLGPRARYPFVPINCGAIPSELM
ESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLPLAMQVKLLRA
LQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIE
LRVPALRERRGDIPALAGHVLQRLARDSGQPAVQLRPEALQALERYDFPG
NVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD
>PFL_3484 sigma factor regulatory protein, putative
MEQQVLDQALEWLVLLQSGISPPEQQAACLAWRRADPQHELAWQRLAGIG
QDLRDSTRSLPAPHARQLLQARSHPGRRTLLKGIVGLGVVAASSWSVRER
LLLPQLFSDYHTATGERRQLQLAAGASLQLDTRTSLDQKASPQGLQLRLN
SGRLLLTLGNAAPVQVTTTDGHIQLAPRSQLILSVGLPGINGTRVQLLAG
SGSVSTAHAPALSLDPGQQVDIAQQRISALAAVPTTANAWTQGLLIAERR
PLGEVIAELDRYRPGLLRCSAEIAGLRVSGSFSLDQPDASLELLARTLPI
RIRRVMGYWASVDAA
>PFL_0572 methyl-accepting chemotaxis protein
MSAVLSLLQSRLLRPVFVTLGIALLVQVLVAVALTRSTVTALEADLASRL
GGDSQKLAGELEQAGKEVTSSLESLSSSTRQRLTAGLSSRLKEEQVQLRA
ALEKDLKDSANDMAQLLASVAPRAMWDSDVPTLSEFARRAQRNPNVLFVV
YDDAAGEHLTRYLNRENPINKALLEKGKGDRALDKVLDAAKNDPSVYYLE
ASINPNGVEIGKVLMGVSTASVEADIAALDQRFSALIASSDQLVGDSLKG
ASADSSAAMRSRLQSAQGTAAQMQANTASTVQEAAATLRWQIGVGLALVG
LALLLLLAVVLGRRVVSKLHLLIAALNDLAAGEGDLTKRVPLNSNDEIGD
MASAVNRFVDKLQPIVREAGDVAQRTGVEIGAMSQRNAGADAAAEAQRDE
VAESLRALSQMADEAQAESQAMQAALQQVVEIRQATDETTRTSEQVGSLI
EALAGQVDTGAKVIERLAQQSEQIEVVLTVIHGIAEQTNLLALNAAIEAA
RAGETGRGFAVVADEVRALASKTQSSTGDIQAHIGALQQGAREAVAAIGQ
AGRQASEGLLVLRDSARLQQSVQSSVEQVHAAIGLATQAAAHQAQGAQAV
RGRVETIHAQAERAAQAVVETTASGKVLDSLAAQLKASLGQFRA
>PFL_3155 sigma factor regulatory protein, FecR/PupR family
MTDHPESLEDAAIDWLVLLHSGNATPAQRMAFQQWRQRSPAHAAAAAEAQ
QLWGDLGQTETARQHQAPPVMVRQPRRLWPALAASLLLALGAGLGWQQWP
ASTSDYHTGVGQQQSITLADGSRVTLNSASALSVAYSADERRVILRSGEA
LFEPLADPQRPFVVQAQAQQLQSAASAFSVRRDGHQLTVVVREGQVQFSG
DHAPVLLQADQRLQYQPGQPLLAQQTVDAASLTAWQRGKLIFNGRPLGEV
IGELERYQHGRILISDGQLAALAISGVFDLHDPQGSLKALQQRYPLHVTY
LPWLAVLH
>PFL_5823 sensor histidine kinase/response regulator ChpA, putative
MVDRHDYVALEWVKGEIAETLKQAHQALEHLADDPQALEAIDQCLEGIHL
VHGSLQMVEFYGAALLAEEMEKLALALQQGRVAQRDEALRLLRQAIGQLP
QYLDRVQSARRDLPLVVLPLLNDLRSARGESLLSETSLFSPQLPSLPPLS
DKALAALEPLELPNQLRKLRHMLQTALVDLLREQDDEQSLGYMAKVFERL
EALCQDAPLAPLWHIASALVEGMRHDEIANSPAVRSLLKDADKELKRLLE
QGMAGINRPAPDELLKSLLFYIAKARHPTPLMLTMKERYGLDDALPDSAV
VDEERARLAGPDRDAMRSVLTAVCDGLVRVKERLDLFVRSDRQHTDDLEG
LLSPLRQIADTLAVLGFGQPRKVIIDQLAVVQSLAQGQRAPDDAVLMDVA
GALLYVEATLAGMAGTVEPESREESRLPTTDLTQIHQLVIQEARVCLHQA
KDLIAECIEADWDAEHLQALPELLTQVRGALAMIPLPRAAGLMQACQQFV
VEHLLAARSRPDWQQLDHLADVLTSLEYYLERLSEDHEAPGEKILDVAQQ
GLLALGYVPVEQVPLLDQPLSPSEALVMQDLQELDDPRVAQSLADVLAVP
VSALNPPALITPGSLLPPPGDEEPVDDELREVFLEETEEVLEMLREYLPR
WAADPHGTSALSELRRAFHTLKGSGRMVRALVLGELAWAVENLLNRVLEH
SVEPGVEARQLVADTLQLLPELIAEFAQQAQRQRDDVDRLAARAHALANG
AQGSAPVPAEALDPQLLEIFRTEAQTHLDSINRFLEQAAEHVPLQASDEL
QRALHTLKGSASMAGVLPIAELAGPLDQLAREYRAHLIPLDLDEVELLLE
AEGLLRRGLRQLDSDPLAPIDGARSLVGRALALLGERLETLLSAPDSAPR
AKRDPQLINNFLAQGMDILLDAESLLRRWQQHPGERQELSALLDELTTLG
EGAHLADLHPVDELCEALLDLYGAVEESSLAVSERFFHEAESAHDALINM
LDELAAGQEVSPRPERVQALRELLDEGLDPSATGLIKSDGSRALSISELG
AATARLEQAEAPLQADDEIVEIFLEEAVDILESADQALQRWLADPDNGAP
LSSLQRDLHTLKGGARMAEVAPVAELAQELESLYEGLVDRRYSHSQHLGL
LLRSSHEQLALLLEQLQGQHPLDESRAQIEAVRSYRQQAASTGEVAQGTV
EADRAAQDPELLEIFLEEGFDIIDSSAAALARWQAEPQGRQEVETLLRDL
HTLKGGARMVEIAPIGDLAHELEFLFEGLSAGLLQPSPVLFTLLQKSHDR
LAQMLDAARAGQPIEPAQKLIDAIHDLSHPRVATGVAAEAALPSTKPEPA
APAAEAAVAGDMVKVSAELLDDLVNLAGETSIFRGRIEQQVNDARTALGE
METTIERMRDQLRRLDTETQGRILSRQQVEAERLGYEEFDPLEMDRHSQL
QQLSRALFESASDLLDLKETLDRRNHDAENLLQQQGRINTELQEGLMRTR
MVPFERMVPRLKRIVRQVAEELGKDVEFVVGNAEGEMDRNVLERMVAPLE
HMLRNAVDHGLESAEARLAAGKPAQGRISLDLSREGGDMIFDMRDDGAGV
PLEAVRKKAIKRGLLDPEAQLSDREVLQFIMQPGFSTAEKITQISGRGVG
MDVVHEEVRQLGGSMSIDSVAGQGVHFRIRLPFTVSVNRALMVQCADEQY
AIPLNTVEGIVRVLPAELDGYYQLDPPRYEYAGQSYQLCYLGELLHTVPR
PKLLGQVQPLPVLLVHCNEQRIAVQVDTTAGTREIVVKSLGPQFAAVQGL
SGATILGDGRVVLILDLLAHIRALQAQAPLPRLAGDEPASEVQPPRPMLV
LVVDDSVTVRKVTSRLLERHGMNVLTAKDGVDAMALLAEHTPDLMLLDIE
MPRMDGFEVAIQVRNDPRLQHLPIIMITSRTGQKHRDRAMAIGVNDYLGK
PYQESVLLESIALWSKTHA
>PFL_5021 basic amino acid ABC transporter, periplasmic basic amino acid-binding protein
MKNLLKVLATGCLFSALASHAVAADKIVFGIALEPYPPFSMKSGNGDWSG
FEPELIKALCDRMQAQCPLKEVAWDGLIPALQSSQIDAILNSLSITDERE
KVIDFSAPYYQTPAMWVADQSLELVTTPEGLKGKLIGVQGSTSNATFAKT
YYGKTSTLRYYTTQDDMIADLQSGRIDVMLADALTIEPILKTAAGAGLAD
KGLAPKDPLFGSGIGVGLRKGDSALQQRINTALASLKADGTYDKIRSRYF
SVDISAN
>PFL_4320 GGDEF domain protein
MKTPTQTNAIDFDSAKLQRLGFGQQSPLIKQPISLAQLRQQLGLQLQTSL
EPQRILGLFFREVQRLVPLDALQYQHTPSDLRLEFGQRGHHSISYSLSHE
GEPMGELVFRRNQRFSESEQGSLESLLSTLLYPMRNALLYRAATRSALRD
PLTDTGNRIAMDQTLQREIEMARRHLLPLSLLMLDIDHFKRINDNHGHSA
GDQVLKAVAAAIKGQLRNVDMVFRFGGEEFLILLSNTGREAAAMVGERLR
HAAQAQDYRADGQPIELTVSLGCSTLLPGESAESLLRRADSALYVAKREG
RNRLAMAG
>PFL_0200 DNA-binding heavy metal response regulator
MRLLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIIL
DVMLPGLNGWQLLQLVRQRGATPVLFLTARDAIEDRVRGLELGADDYLLK
PFAFAELLARVRTLLRRGPLREAESFSIADLEIDVLRRRVSRGGQRIALT
NKEFALLHLLASRQGEVLSRTLIASQVWNLNFDSDTNMVEVAVRRLRAKV
DDPYMPKLIHTVRGVGYQLEAPDEAL
>PFL_1938 universal stress protein family protein
MPYHHILVAVDLTEECDPVIHRARELSVSNGAKLSLVHIVEPMAMAFGGD
VPMDLSQLQQQQFDQARERLDRLINKYPELTKEYSHLTYGQPRQEIHHLA
KEQECDLIVVGSHGRHGLALLLGSTANDVLHGAPCDVLAVHLVKR
>PFL_5221 DNA-binding heavy metal response regulator, putative
MRILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVIL
DINLPHIDGWGVLGQIRQDSSTRVMMLTAQGRLADKIRGLDLGADDYLVK
PFQFPELLARVRTLMRRSEQAPVPDVLRVADLELDQGRHRAFRGKQRIDL
TTKEFALLHLLMRQSGVVLSRTQIISFVWDMNFDCDTNVVEVSIRRLRAK
IDDPFERKLIHTLRGVGYVLEERD
>PFL_4062 conserved hypothetical protein
MLYVGYPKLTPAEHLAHLPVLQLEPAPADLGQVLHAADPHQPPTRIRLTT
VAGQPRYILEYPGPRKVAVDSQSGLPAAPPDRVEALAAARQFAPEAVARD
RGVVQEDMWSLSRALDADRPLHRVAIADAERRLLYISGTTGEVVRDATAS
ERGWNWIGAWLHWLYPLRGIGIDGAWGPIVTYLSLAATLMAVLGLAVGVL
RWRFKRTYRNGSHSPYQGFARWHHLGGMLFGVLLITWIFSGLMSMNPWKL
FSSAQPLSVAAYQGGPLGALAFPLNAGQVLQRFADDGLQARELEWRMIAG
KGYVIGYDGAGRTRIFDMAGDRVQRRFHPGTLQQAAWAIRPGQPMLVEQL
AAYDFYYYAREPQSMMGHLQQRLPVLRVRFDDPAHTWLHLDLHTGAIVGQ
LDQPRRASRWLFALLHSWDWLPLLANRPLWDLWMIAFSAGGLLVSASGVV
LGWRRLGRSLQRR
>PFL_0517 conserved hypothetical protein
MRLSELKNSGRSPTLPLSLELADAAGPAQLQLLSLLRVLPGQRYVGAGVW
RGRPVLAKLLVGSKAARHFQRELQGVRLLAEQGLTTPLLLADGLQEGEGG
WLLFELLQGAQSLGDAWKQVEALPVLADEQAEVLAEALGAIGQLHAKGLW
QSDLHLDNLLRHDNRLYLIDGAGICVEEAGKPLSRQKVLENLGVFFAQLP
KSLEPFTEELLVHYLLSNAEHALPLEALQKQVNKVRGWRLRDFLNKVGRE
CTLFSVQRGPFALRAIRREEEAAMLPVLEQADALLDQGHLYKTGGAASVG
RVEVAGRPLVIKRYNIKGFAHWLKRFWRPSRAWHSWREGNRLAFLGIATP
KPLALLERRFLWLRRSAYLVTEHLPGPDIIERFAPFVDSGQAPEPELLAL
DQLFAELIKERISHGDFKGHNLFWQEGRWALIDLDSMCQHSSLSSFALAY
ARDRARFMRNWPQDSNLYQVIDQRLPKTAQGTEA
>PFL_4852 DNA-binding response regulator, LuxR family
MKRVLIVDDHPVVRLAVRMLMERHGLEVVAEADNGTDALKLALEYVPDIL
ILDIGIPQLDGLEVINRLMSRGMSIKILVLTLQVPGPFSMRCMQAGAAGY
VCKQQDITELLSAVRAVLAGYSYFPNEALHTFRSSQGISSEQQMIELLSG
RELIVLKQLTNGMSNKEIAEGLCLSNKTISTYKRRLLAKLNARSLVDLIE
FAQRHRLI
>PFL_3574 sigma-54 dependent transcriptional regulator
MNDSESLKDYQRVRQLAIRSLFEIIEQSSEGTVIVDRDANIVWMNERYAR
RFGLESAAFAIGKPCESVIPGSLLREVVRTGRPILLDMQDTPKEPLVVMR
LPIHDDAGTVIGAIGFALFDELRSLSPMLKRYLSMQEELASTRSLLRARQ
TKYNFAHFIGTSAASLEVKRRARRGASAESPILLQGETGTGKELLAQAIH
AASPRAHKPFVSINSAAIPEALLEAEFFGTAPGAFTGADRKGRPGKLQIA
QGGSLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNEVIHSDVRIIAATS
TDLEAAIKRGEFRADLYYRLNVLPIQVPALRERLDDLPALSEGILEELRS
QHELDRDALALLAQHAWPGNIRELRNVLERAALLSDDLILNASDIRAAIG
SFSPVQRNEALVPGDSPNQETFAAARERFDRQLIGATLAQCAGKVDEAAR
RLGLGRSTLYKKMAALGIVESQ
>PFL_1408 transcriptional regulator, AraC family
MIDGAQLHHLPRAIAAHAPRDLNGLLANMAPITPLLDCIPSAVFFIKDLQ
ARYRVANLTLAQRCGFKNVRPLLGKTSAEVFPAVLGPVYTEQDQRVLRQG
ITIKGQLELHLYGSREPGWCLTHKLPLYGRDGQIIGMAGISLDLQAAHDT
HPAYERLAAVDRHIREHYSEAIRLDDLTRIASLSTAQLERYCKRIFHLTP
RQMIHKVRLEHASQLLLTEEPITEVALQCGYTDHSAFSRQFKALTGLSPR
QFRQNAAR
>PFL_6085 FHA domain protein, putative
MSLCLTITSYHKITPGQCPEKLMDQGMMAIGRSSDNDWVLPDPERLVSAR
HCVIQYKDGRYYLTDNSTNGVELVRAGIRMRRGSSEPLEDGEVIRIGDYE
ISARIDFSLNRPGAEPFSGDSSNSFEALMGRQAASPTPIEPISMAPVAHF
QGASAQDTFPDLFDFLAPSATPPATQPDHVPAEQHDFRPPTPTAVPQPVA
PPEPSAPQGGAVIPEDWDLFGSTPASPAPVPSAPPVVAPPVVAAAPIAHQ
ASFAAEPAQPQPQPQPQPQPIAQAPVAPVVSEVELAPVVTPAPAPVAPQG
DLLQAFLRGAGLDQLRIEPQQAQAQMESLGRSYRLMVEGLIDVLRARSSL
KGEFRMQQTMIRPVENNPLKFAPNVDEAMLLLLRHSNQAFMAPDQAVQDS
FDDLRAHQLAVMAGVEAAIKHLLGRFEPTELEARMARPGGLGNLFSGSRQ
AQNWQQFTALYKQISQEAQDDFQDLFGREFSRAYEEHTHRLRRS
>PFL_3819 EAL domain protein
MVGQGPLGECGGGLVVPRSRVRRWLAYGSVMQSIKDFYRELAEGHLMLAF
QPVVWLPDSSRVLYHEGLLRHVDAQGGDVYPLALLEKHQVMRELDRSVVL
CVIDSLQRDERLRLGCNISAQSAIIDSFWYPIVQQLRDFPGVAARLVIEI
TESATPPSIEAASEFVLCLRELGCRVAIDDFGAGLGTLEFIRQTRPDIVK
IDKGYIQRARSELNSAQTLSHLVQLCKTLAPCVIIEGVETATDQGLATAC
GGEWGQGYLFGRPQVDRLGRRCRLAQRVPQLCTPDQA
>PFL_3248 response regulator/sensor histidine kinase
MLSNIQAKLLIVDDLPENLLALEALIKREDRTVYKALSADEALSLLLQHE
FAMAILDVQMPGMNGFELAELMRGTEKTKNIPIVFVSAAGRELNYAFKGY
ESGAVDFLHKPLDIHAVKSKVNVFVDLYRQSKAMKQQVEALEQSRREQEA
LLQKLQATQNELEQAVRMRDDFMSIVAHEVRTPLNGLILETQLRKMHLAR
ENAAAFSLDKMHAMVDRDERQIKSLIRLIEDMLDISRIRTGKLSIRPSRF
DLAQLVRGLVENFAPQVEAAQSSLSLQAEQPLEGNWDEFRIEQVVSNLLT
NALRYGAKSPIEVRVYAQDGEARVEVRDHGIGISEDNQKRIFQQFERVSA
NHVAAGLGLGLFISEQIVTAHGGAISVESRIGEGALFRVSLPL
>PFL_4997 DNA-binding response regulator
MSRLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALEREVPDLII
LDLMLPGDNGLTLCQRLRQQHATPVIMLTAMGELSDRVVGLEMGADDYLS
KPFDARELLARVRAVLRRAGENRPVSADVPRPLIKFADWQLDLTRRELRS
PDQVMIPLSAGEFDLLLVFVEHPQRILTREQLLDLARGQAHDAFDRSIDV
QVSRLRRKLEFDTKRPAMIRTVRNGGYLFTPSVTRQ
>PFL_1668 chemotaxis protein chey
MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLNSGSIDFLV
TDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNG
YVVKPFTAQALKEKIEKIFERIG
>PFL_1592 conserved hypothetical protein
MRKTLIALMFAAALPTVAMAMPEGHGPMGPMDGPRHSEHMRGKGPFSQLD
LSREQRQQIGKLMGEQMHDRKAVVEKYLEKLSPADQKAMKDELTAKHQKT
QADIRALLKPEQQKEFDTIVKKQEERRAEWAEFKAWKAQQPQKAQ
>PFL_1738 sensor histidine kinase/response regulator
MTLRRRWDIQTRTQLISLGPALLLTLLLISFFTFVRIQDLRQELNHTGQL
IANQLAPATEYGVISGNNEGLESLLQATLATPHVHFLEVQDSANNILVYV
EQPSASHNHAQQIKVFQAPVRLQRIQVHNDFLQNDPASMAAQGDGYLGRV
IVGMSNDAFSQRQQEILLKAAILALFALLFTFLLARRLAAGLAQPIRAMG
DAVKAIQEGDFKTPLPIVDDGELGNLARHINNLAAGLELASREQHQAMSQ
LIQTREEAERANKAKSDFLAMMSHELRTPMNGVLGMLQLLETTQMTQEQS
EYAALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELITSSAQA
FQHSALQRGLDLQLRLPPGMESLQVKGDPTRIRQILVNLIGNALKFTEQG
SITIEPQWQALDHELLWFTCAVRDSGIGISPASLELMFDAFQQADSSISR
RYGGTGLGLPIARTLAERMGGTLRAQSEEGRGSVFTLEIPLALFQQSLPV
LAPRVSSNQHSGEGRNVLLVEDNPVNQTVIQAMLRSLGFTVSIVTDGAQA
VRSAESLIFEAILMDCRLPLVDGYEATRQIRQLPGCADLPIIALTANALQ
GDREACLAAGMNDYLAKPFKRADLQQILQRWVQ
>PFL_0884 sensor histidine kinase
MLAPVKLLSATRQNLWRLTFIRTLVLAAQAGSVGLAYWLDLLPLPWLQLG
VTLMFSMVLCAFTAIRLRTSWPVTELEYALQLACDLFIHSVLLYFSGGST
NPFVSYYLVPLTIAAVTLPWRYSVVLSGIALTLYTLLLARFYPLQTFPIA
RENLQVYGMWLSFALAAAVITFFAARMAEELRRQEELRAIRREEGLRDQQ
LLAVATQAAGAAHELGTPLATMSVLLKEMRQDHPDPLLQDDLGVLQDQVK
LCKETLQQLVRAAEANRRLAVDMQEVTQWLDEALNRWHLMRPEASYRFHL
LGEGPVPRLAPPPDLTQALLNLLNNAADACPEGLEVRLDWDAENLTISIR
DHGAGVPLAIAEQIGKPFFTTKGKGFGLGLFLSKASVTRAGGSVKLYSHE
EGGTLTELRLPRAARGDDHE
>PFL_0182 hypothetical protein
MANEEQTPMATIFGFAEKYLKRPLTQVERQVLEAFAQDKPLDMSRAAQQS
VDQARQRATELMQSDGLRTRQIIDQLAGSAAAGKADPQARELVLRQLLAA
AESEEPLSVSPPRAGLVTTAAAAAAAAALAPALSPASFPVDDPQLKAMIN
ALVQQEVKAAVEARMAGLSQKVEDTLKQLTAGSGQ
>PFL_5635 sensory box-containing sigma-54 dependent transcriptional regulator
MLTVESRVNFNDASFEELLNALHDGVYITDGQGQTLKVNQAYERLTGLNG
AELLGRPMQELVKSGVISQSASLRVLQDGRPVSVMQSLSHGKKLLVSATP
ILAADQSIRYVVSTVRDMTELLRIKRERDELQQLKQLRTSTARLHAGQRD
DLLQSPLMADQEVSGRVFAQARQVADCDVKVLLQGETGVGKTLVAQFIHN
ASARAREPFLALNCGALPENLIEAELFGYAPGAFTGAGSKGKRGLLELAH
NGTLFLDEIGDLPLAVQVKLLKVIEENRFIPVGGLELKEVDVRIISATHH
DLKQRVAEGKFRADLYYRLNVVPIAIPALRERSEEIGPLLEYYLEHFNQR
YQRQVQWSLEALELLGEYAWPGNIRELINVVERLVVTCSGQVIEALDLPE
DLIEQQARNTDDSRLPLRKVLENAERQAIRAALQLHKTTRLAAKALGVSQ
ATVVQKMKRWEHSD
>PFL_2956 response regulator
MLKLRVGVLEQHNIVRHGLYKHLSRQSVLCLSEFFNFADMLEALEQEQLD
VLMIGHLMDSDPVHLVRNLSTRYPDLKILVLLNRPDPVIASQLQAVGAHG
VMSKTQSLPDYADALRSLARGERYAMLSDGRASMEKPLYDA
>PFL_3041 conserved hypothetical protein
MTDSASQAEEYLMMQAAHWCMRLREADCSLAERRAFEDWLQSDPSHAFEY
AKMLEAWDLTGQLSPTLPSL
>PFL_4282 DNA-binding response regulator, LuxR family
MGNIIIVDDHPLIRLAIRSVLDPHHHNIVAEADNGADAVQLVRKHLPDLL
ILDLGIPNLDGFSVIAHIKSAGLHVKTLVLTSSDSKNFALRCLQAGAAGF
LCKTENLHELANAVKAILSGYSYFPEDTINILQQNTNAANQESVLISRLT
DREITVLKLLATGLNNQQIADALLISHKTVSTYKVRLLKRFNVSNLVALA
ELAKRNAVV
>PFL_4239 sensor histidine kinase/response regulator
MPGTLAMTPALLPMGVAALLLLSMAAGLGLACLYRQLRQHRQQVQALQQT
VATLGTSLQQAERANRLKGQFLGHLGHEIRTPLNAFIGLLELVLQRTEDG
SANRGSLELALGAASDLRELLGDLLDISRIESGQLQLNPAWTCLSHSAEA
VLGVFQALARQKNLDLSLEFQAPSPEPQVLVDGLRFKQILTNLLSNALKF
TRQGKVQVKLQLLPAARAGHFDLLLRVLDTGIGIPPQERQRLLQPFAQVE
PTSQSPRDSSGLGLPISHQLCLQMGGSLSLHGRTGPGCEVQVRLTLPGRT
AVAPRPVAATPAAAQLPLDVLLADDHPASLTLLQGQLEHLGHRVTCAGNG
LQAYQLWREGDFDLLIVDCNMPLMNGYQLAEAIRRSEGSGPAVNLIGCSA
SNDPQTHQRGLDAGMHDCLCKPLGLELLGSRLATLHPRPRPDSFSIEALF
TLTHGKPQLVRSMLEKLSQCCREDRHLLGRIPPDDFTALLELAHKIRGSA
LMVRATPLQNCCEDLERACLERAGATVISTAVRALDLALIRLAQSLHRHL
EGQAQSQPALPREATRPASCQENSKRPVLPRRQPHP
>PFL_2516 sensory box histidine kinase/response regulator
MPRFILPMLMWLTCLPAMADPARALQLLNYESPHHQPLPLSGDDWQWLRN
KRELVLGTSQQNLPPLEMVNEAKEYEGITADYAGLLGDALGVKISVRAYD
TREQVFSALAKGEIDFMGSVTQGEAERRQLLRSQIYLANRPTLVARLGDS
PSLKNGLQGYRLAISLDSISLPVAQAMYPTARIESYASADAAMAAVAFGD
ADMLLGDAVLAQFLISRNYSDYLRIIYSGPASTSGFSFAVAPDNQRLQHL
LDNALQAVHKEQGTSIRNRWGDRLLLSMEKTSLTVEEQRWIENNPVVRIG
IHRYLPPMSYFDANGNYLGITADLLTMLEAKTGLSFDITALPSFKDLNEA
VRNGQVQMVADRARTPERETYLQFTRPYLVGPYMLVTSDAANAPKSLEDM
AGKTLLIGSGHALVSQLHQRYPQIRIKEVQTNFEALSLLRDHKADGTVQA
EIAVSFNLPRIKEDQLKVRPALDLPLLNESFAVRRDQLELFSIIDKSLRS
ISPDAITELNNRWRSKAAVAPPSWRDYRTTLYLAGAGSILLLLISLAWGY
AMRRQVRQREKAEHALNDQLRFMDALINGTPNPIYVRDLKRRLVICNDSY
LKSMGTDRQSMLGTDLEQLAVPEAEQFSKDFQSIFDGGPPLLIDRTVHIR
GQEMRIYHWMLPYRNAEGEIQGIIGGWLDISERQQLLQELTQAKDEADKA
NRAKTTFLATMSHEIRTPMSAVLGMLELALKRADQGQFDRPSIEVAYSSA
QTLLELIGDILDIARIESGHLSLSPERANLRGLVEPVFRVFDGLARQKGL
RLELELDSHAGDDVLVDPLRFKQILSNLISNAIKFTQQGGVQVRLATGPS
EPEYLALLLTVKDSGIAADDLQQLFKPFSQVLGQHQDARSGTGLGLVICR
TLCEMMGGTLTLHSQPGLGTEVRVQLRLSRLPALPQAPTVLPPAAPAVAA
RQALHILVVDDSQANRQSLCEQLKYLGYSLSQGSNGAEAFKIWREEPFDL
VITDCNMPVMSGYQLARHIRASEREQQSAPVHILGFTANVQPEEEQRCRD
AGMNGCLFKPIALPDLDLRLRSLAALPRVQSQAPRERYDIQQLDYLTNGN
PKVIQRVLRGLHQSNQKDLMDIREQLASETHQGVADLAHRIRGAAQIIKA
QVLIQECEYLERACLQGAASTEIKAALARLEQAMLELDRDLLDALQPE
>PFL_1530 aceK, isocitrate dehydrogenase kinase/phosphatase
MSQSWPAADIARMILDGFDDYREHFRQITDGARQRFEQAQWQQAQKASAA
RINLYEEKVGETVARLHQAFSTESLMDVSQWPLVKSAYISLIDLRFDDEL
SETWYNSIFCGLFSHDLISDGCMFIHTTRPSLRRARAAQTRSYKPQGELA
TMLEQVFADYRFSEDYADLPGDLRRLEAQLRENLPDWVCKDPELTLELFS
SVLYRNKGAYLVGRIFTHEEQWPLVIPLLHREGRGIQIDALITDEADVSI
IFSFTRSYFMVDVPVPAEFIGFLKRILPGKHIAELYTSIGFYKHGKSEFY
RALINHLASTDDRFIMAPGVRGMVMSVFTLPGFNTVFKIIKDRFSPSKNV
DRATVIEKYRLVKSVDRVGRMADTQEFADFRFPLSKFDPACLEELLEVAP
STVAVEGQTVLIRHCWTERRMTPLNLYLEHANEAQVREALEDYGLAIKQL
AAANIFPGDMLLKNFGVTRHGRVVFYDYDEICFLTEANFRHIPAPRTPED
EMASEPWYSIGPHDVFPEEFPPFLFADAGQRKLFDQLHGELYNADYWKGL
QEAIRAGKVIDVFPYRRQGLEDE
>PFL_3319 aer, aerotaxis receptor Aer
MKNNLPVTQRERVFPAEQRLISATDTHGKITYCNDEFVAVSGFSREQLIG
SPHNIVRHPDMPEAVFGHMWSYLKDGKSWMGIVKNRCQNGDHYWVNAYVT
PIFSQGVIAGYESVRVKPERQQVERAAALYSHLRSTRLATPWRHRLLGAG
VFVLPPLLAVLASAMAGWLAGLWAGLGVALLGLFAVQAHGAYRTGQLLGR
ISAVSLGSFDSELIARTYTDERGPVARLQMILISEAAKIRTALSRLGDYA
NQAASLASTSQNLSRQAESALGKQRDEADMAATAMNQMASSIAEVSVHIH
DTAAAADQVNELTQVGSQEARRSRVVIEKLADTVDAVSQSVEGLAQETQS
IQVAANMIHSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKT
RESTQSIQRIIQSLQQVAGQAVEVARQGSVEARSGVAQVVSTQQALDGIN
SAVERIHQMSQQMAAASEQQAHVAEEISEQISNIARVSDQNADIAVHSCS
IGGDLESTAHELNALVTRFNS
>PFL_1927 aer, aerotaxis receptor Aer
MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSREELVR
APHNLVRHPDVPAAVFAHMWGTLKQGLPWMGIVKNRCKTGDHYWVNAYVT
PVFEGSQVVGYESVRVKPTAEQVRRAEALYQRINSGKSAIPKRDKWLPVL
QDWLPFILVSQLSFMIGAWLNSHWGFALAAALSVPLGLLGLSWQQRGLKR
LLRLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQEARLKTCLTRLQDTA
EHLNEQARQSDTLAHNSSSGLERQRVETEQVATAVNQMAATTQEVASHVQ
RTADATQEANRLTGRGRDIAGETREAIQRLSVVVGETGLTVTQLAKDSDE
IGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRT
SESTGQIHTLIAKLQQTAATAVQTMDAGHRQAEEGVARVLEADQALVGIS
EAVANITDMTTQIAAATEEQSSVAEEISRNISTIAQLADQTSEQAQHSAE
LSEALTRTAHTQYSLVERFNR
>PFL_1901 aer, aerotaxis receptor Aer
MRLNLPVTSVEQTFPDQQRLISATDINSHITYCNAEFAAMSGFSQAELIG
STHNLVRHPDMPAAVFESMWGYLKAGQSWMGVVKNRCKNGNFYWVSAYVT
PILEDGKLVGYESVRVKPSREQVSRAETLYARLRADKAPVCAWRRIEAAA
RPLLLPVAVAVGCLAAFHWLPTLAAQGLTVAGFVAVGLLAQRRLGQQLKQ
IVSSTPNTFADPICALAYSEALGPAAQLQMILISEEARLKTALTRLSDLA
RQMATAAADSSQLSSRTESALLEQRAETDMTAAAMTQMAASITEVAEHVQ
HTASEAHTANLLARQGSEVAGTSRDAIQLLARTVTQINQAVGDLAGQTQE
IMVAASMIQAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAGKT
RESTQQIQGIIQSLRAGADEAVQIASLGIEEAEQGVQQVVQAQQALQGIG
AAVERITDMSQQMAAASQEQSHVAESVSEQINSVAVTVQRTAENASAGVV
RGAELENISSGLRALVERFNR
>PFL_2204 agmR, DNA-binding response regulator AgmR
MYKILIADDHPLFREAIHNVISDGFPGSEVMETADLDSALALTQEHDDLD
LILLDLNMPGMHGLNGLITLRNEAPTIPVVIVSAEQDKQIVLQAITYGAV
GFITKSSARSQMTEAIEQILNGNVYLPPDIIRTQKSQPGRRSSETPSFPP
ELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNV
HNRVQAILSAGDIDFGAYLRR
>PFL_0091 algB, alginate biosynthesis transcriptional regulatory protein AlgB
MESAPENQGRILLVDDESAILRTFRYCLEDEGYTVATANSAAQADALLQR
QVFDLCFLDLRLGEDNGLDVLAQMRTQAPWMRVVIVTAHSAVDTAVDAIQ
AGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSH
SPAMKVVLETARQVASTDANILILGESGTGKGELARAIHGWSKRAKKSCV
TINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGD
FPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRF
REDLLYRLNVITLHLPPLRERSEDILTLADRFLARFVKEYSRPARVFSDE
AREALLNYRWPGNIRELRNVVERASIICPQERVEISHLGMAEQPTNNAPR
IGAALSLDELEKAHIGAVLATSDTLDQAAKTLGIDASTLYRKRKQYNL
>PFL_6003 algR, DNA-binding response regulator AlgR
MNVLIVDDEPLARERLSRMVSELEGYSVLEPSATNGEEALSLIDSLKPDI
VLLDVRMPGLDGLQVAGKLCERETPPALVFCAAPDEFALEAFDASGVVHL
VKPVRSELLLEALKKAEKPNRVQLAALTRPAAESGNGPRSHISARTRKGI
ELIPLAQVVYFIADHKYVTLRHEGGEVLLDEPLKALEDEFGDRFVRIHRN
ALVARERIERLQRTPLGHFQLYLKGLNGDALIVSRRHVAGVRKMMQQL
>PFL_1910 anr, transcriptional regulator Anr
MSEPVKLRAHNQAHCKDCSLAPLCLPLSLNLEDMDALDEIVKRGRPLKKG
EFLFRQGDGFDSVYAVRSGALKTFSLSDSGEEQITGFHLPSELVGLSGMD
TESHPVSAQALETTSVCEIPFERLDELALQLPQLRRQLMRVMSREIRDDQ
QMMLLLSKKTADERIATFLVNLSARFRARGFSANQFRLSMSRNEIGNYLG
LAVETVSRVFTRFQQNELIAAEGKEVHILDPIQLCALAGGSVEG
>PFL_2184 arsC, arsenate reductase
MRVLFMCTANSCRSILSEALFNHLAPEGFAAVSAGSFPKGQVLPRSLSTL
QQAGIATDGLYSKGNDAFADNPPDIVITVCDKAAGESCPVYFGPALKAHW
GLADPSDVRGEEAAIDAAFRATLAQIEQRCAAFFALPFNHLSRDQLKTEL
DRIGTL
>PFL_5200 bphP, bacteriophytochrome histidine kinase
MTPQDAQAFEQLLANCADEPIRSPGAIQPHGVLLTLSEPELRIQQISANV
EALLGQPAAQVLGQPLEQLLGDTDGQRIREVLQLPRLSDAPPLHLAVNGA
RFEGLLHRHQGVLMLELEIQLEHLQPQHLKEQTENLGRLLRRLQTAKTLN
ELYAISVSEIQAMTGYDRVLIYRFEEEGHGQVIAEATRPTMEVFNGLFFP
ASDIPQQARELYRSNWLRIIPNADYQPVPLLPALRPDTQQALDLSFATLR
SVSPIHCQYMKNMGVLSSMSISLLKGDQLWGLISCGNRQPLLVPHELRIA
CQTIGQVLSLQISAMEALDISRQREEKVTALASLDQAMRDTPDSVFDGLA
QVPQLLLDLTQAGGVAIIEDKQLHCFGNCPPQDEIRALHRWLQGTGQAVF
ASHHLANVYPPAASYQQVASGVLAMTLPKPVDNGVLWFRPEVKENINWSG
NPQKPLDLENSDAGLRLRPRTSFEIWKVEMAGISTKWSHGDRFAANDLRR
SALEHDLARQVLREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKAF
SSDGPHTSRRISSAIDTMQQAASRMNNLLEDLLDTSKIEAGRYSIAPQPL
DVSQMFEEAYSLLAPLALDKAIDISFHAEPDLRINADPERLFQVLSNLVG
NAIKFTPKQGKVGVVAMSDGEQIVFSVRDSGEGIPTDQLPFIFDRYWTMK
EGNPNGTGLGLYITQGIIHAHGGKIEAHSEVGKGSEFRFSVPRASL
>PFL_1670 cheA, chemotaxis sensor histidine kinase CheA
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHT
VKGGAGFLQLNELVECCHIAENVFDILRKGERRVDSELMDVVLEALDAVN
GMFSQVRERTEITAATPELLAALARLAEPAGAEPAAPAVEEVVEPVAEPV
AEESPAGDITDNEFELLLDSLNAAKAEAEAAPAAAPAAQGEPASDEITDA
EFESLLDQLHGKGQFAPDAVAPAAASATSGAAGAGDEITDDEFEALLDQL
HGKGNFAVEALDSAVAAAPAAPAAAAPSAAAAGSDLITDHEFESLLDELH
GKGKFSETPGAAKPAAASAAPAAAATAAVAKPAAKKPEPKAEAPKAAAAP
AAAPARAAAAAPPAEKPASEAETTVRVDTARLDEIMNMVGELVLVRNRLV
RLGLNSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRD
LARQLKKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGIESPEER
EASGKSRGGKVVLAAEQEGDHILLSISDDGKGMDPNVLRAIAVKRGVMDK
DAADRLSDTECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSI
NIYSTKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDL
SRTNVVDGQEVVIVRDKALPLFYLKRWLVSSAAHEEQREGHVVILSVGTQ
RIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSM
LKRYAARRI
>PFL_4481 cheR, chemotaxis protein methyltransferase CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGIKTLGEL
VQRIQTQPRSGLREMVVDAMTTNETLWFRDTYPFEVLKNKVLPEAIKASP
NQRLRIWSAACSSGQEPYSLSMSIDEFERSNMGQLKMGVQIVATDLSGTM
LNNCKTGEYDSLAIGRGLSAERLQRYFDPKGPGRWVVKAPIKSRVEFRSF
NLLDSYASLGKFDIVFCRNVLIYFSAEVKKDILMRIHSTLKPGGYLFLGA
SEALNGLPDHYQMVQCSPGIIYQAK
>PFL_1131 cheR, methyltransferase, CheR-like
MSEEQRFFDFLKERIGLDVASVGPAIIERAVRQRCNALYARSSDEYWQKL
QGSRDEQQALIEAVIVPETWFFRYPESFATLVKLAKARLAQIKGMRALRL
LSLPCSTGEEPYSIAMALLDGGLAPHQFKVDGLDVSPLSVERAKAALYGK
NSFRGQPIEFRERHFNPEEGERYRLSERVREQVRLQVGNVLDPGLLASEP
AFDFVFCRNLLIYFDQPTQRQVFEVLKRLTHEEGVLFIGPAEGSLLGRLG
MRSIGIPQSFAFSRHHEPEPAPVVLPQPLPLPVPVRSVVPPTPRPRPFAR
RPVAAPLSDGALMESDAASLLATIAALANEGKSAEARAACERYLQQHEPV
AQVFYWLGLLSDVAGNAMEAQGYYRKALYLAPQHPEALAHLGALLASQGD
VAGAQRLQERAARSVRSADSELKR
>PFL_3250 cheR-2, chemotaxis protein methyltransferase, CheR-like
MATQDGKNLVERNTEIELRLLIEAIYLKYSYDFRDYSGASIKRRVNHALR
QFECKTISALQERVLHDPTAFMQLLQFLTIPVSEMFRDPSHFLAIRQEVV
PLLKTYPSIKIWIAGCSTGEEVYSMAILLREEGLLERTIIYATDINPSSL
EKAKQGIFSLENVRAYTHNYQQAGGQRSFADYYTAAYDYAIFDKSLRENV
TFADHSLATDSVFSETQLISCRNVLIYFNKKLQDRAFGLFHESLCHRGFL
VLGSKETLDFSAYGKHFEPLVKQERIYRKT
>PFL_5822 chpC, chemosensory protein ChpC
MLDHRASTLTGLLLPLADRTLILPNVAVAELIDYQQGTFDLDSPPWYLGR
VLWRERRIPLISFESACGGRTVIGERARIVVLNALGGRPELKFMALLVQG
IPRSCKLDSQLSYVDVPLAALEKAAVQVVEQVAKVPDLLALEELLVTGL
>PFL_4836 colR, DNA-binding response regulator ColR
MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVL
DIMLPGIDGYTLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYL
LKPFALSELAARIEAVMRRSQGGGRRSLQVGDLSYDLDTLEVTREGRLLK
LNPVGLKLLAVLMQKSPHVLRREILEEALWGDDCPDSDSLRSHVHQLRQV
IDKPFAKPLLHTVHGVGYRLAEGRDGV
>PFL_4835 colS, sensor histidine kinase ColS
MEFKQSLAQRIIIAFALMSALVAGAFAMGIVATVHLVEEKLISAGLGGDL
QRLLLMDNVGDWSHRPEPDQLFYYSGGRGDFELPKDLRHLDPGFHEVFRE
ELSYHAMVEVVDGRRYVLLQDQSDFEERERVLFAVVLVGFVLSLALAVFL
GWILARRVMAPVVRLARQVRHRDQLLGLAPPLAPDYAADEVGELAIAFDA
TLGRLRQALSRERLFTSDVSHELRTPLMVLATSCELLLENPRLDPRGRAQ
VERIARACDEMRELVQTFLMLARAQREDASMSPQLSLSQAASDLTGIWRE
AIEAKGLELIFEPGTPGDNRYNATFLHAVMGNLLRNALHYTEQGFIRLSL
VPDGFVVEDSGVGIPEEKREAMFQPFVRGDEKRGEGLGLGLSLVQRICEN
QGWTVSLTTMTPNGCRFFVQLNSAKA
>PFL_5713 creB, DNA-binding response regulator CreB
MDAMPHILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPAD
LIILDIGLPDISGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADD
YVVKPFSPREVAARVKAILKRMVPRVAPEAVAALFVIDPERVQISYRGQP
LSLTRHEFRLLQCLLEQPERVFSREQLLDALGVMADVGYERNIDSHIKSL
RAKLRLVAAQAEPIQTHRGLGYSYSPSHA
>PFL_5712 creE, sensor histidine kinase CreE
MTLGLRIFLVYLLFISLTGYFVLSTVMKEIRPGVRQSTEETLVDTANLLA
EILRDDFKAGTLSENRWPQLLRAYGERQPAATIWGLPKNQVNHRIYVTDA
KGIVVLDSSGLAVGQDYSRWNDVYLTLRGQYGARSSRSLADDPSSSVMHV
GAPIRDNGQIIGVVTVAKPNSSLQPYVDRTERRLLWYGAGLIAMGLLFGA
LLSWWLSAALRRMTAYALAVSEGRRAELPHYRGGEMEQLATAVEHMRTQL
EGKAYVERYVHTLTHELKSPLAAIRGAAELLQGEMPLEQRQRFVGNIDSE
SARMQQLIERLLNLAQVEQRQGLEERVNVPLAPLCKELLNSQHGRIEGKQ
LQVELRVPADLAWSGEPFLLRQALGNLLTNALDFSPVGGLLRCSAQPVEE
GVELVLFNQGEPIPDYALPRLCERFYSLPRPDSGRKSTGLGLNFVEEVVQ
LHGGQMRIDNVPGGVQVTLRLP
>PFL_2095 csrA, carbon storage regulator
MLILTRKVGESINIGDDITITILGVSGQQVRIGINAPKDVAVHREEIYQR
IQAGLTAPDKRETP
>PFL_4504 csrA, carbon storage regulator
MLILTRRCAESLIIGDGEITVTVLGVKGNQVRIGVNAPKEVAVHREEIYL
RIKKEKDEEPSH
>PFL_5352 cstA, carbon starvation protein CstA
MKNNNSLLRHVPWLLLAIVGACALGVVALRRGEAINALWIVVAAVAIYLV
AYRYYSLFIANNVMQLDPGRATPAVVNNDGLDYVPTNKHILFGHHFAAIA
GAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFLSTRRNGRSL
GDMVREEMGRIPGTIALFGCFLIMIIILAVLALIVVKALAESPWGIFTVM
ATIPIAVFMGVYMRYIRPGRIGEISLIGVLLLLGSIWLGGQVAADPVWGK
MFTFTGVQITWMLIGYGFVAAVLPVWLILAPRDYLSTFLKIGTIIALAIG
ILITMPELKMPALTQFTDGTGPVWKGGLFPFLFITIACGAVSGFHALISS
GTTPKLLDNEANARYIGYGGMLMESFVAIMAMVAASVIEPGVYFAMNSPA
AIVGGDVVAVAQTVSSWGFAISPDQLQAVAKDIGENTILARAGGAPTLAV
GIAQILHHVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLL
GSFVPALKRTESWTANLIATAGCVALWGYLLYQGVIDPLGGINTLWPLFG
ISNQMLAGIALMLGTVVLIKMKRQRYIWVTLLPAVWLLICTTTAGFIKLF
DANPAIGFLSLAKKYSDAMANGQIIAPAKDITQMQHVIFNAYTNATLTAL
FLLVVFSILFYALKVGIAAWGSKERTDKESPYQAVPDA
>PFL_5270 dksA, RNA polymerase-binding protein DksA
MPTQAKQQIQSISGFEPYVETAGEEYMGKPMREHFTKILNKWKQDLMQEV
DRTVDHMKDEAANFPDPADRASQEEEFSLELRARDRERKLIKKIDKTLQL
IEDEEYGWCESCGVEIGIRRLEARPTADMCVDCKTLAEIKEKQVGK
>PFL_2596 dksA, RNA polymerase-binding protein DksA, putative
MTKEKLLAMPADDYMNAEQHAFFSDLLQAMKVETHERIEQNRIAIESLDT
PADPADAASVEEERTWLVNAIDRDQRMLPQLEQALGRISDDSFGWCDDSG
EPIGLKRLLISPTTKYCIEAQERHEQIDKHQRQA
>PFL_2292 fecR, sigma factor regulatory protein FecR
MSFAGLQLSVGERQAISGAARWYAQLRSGSASEQEQAAWREWLAADPLHR
QAWERMQQLGEQMSALPGGLAGSTLRGAGRSRRELMRNLVVLASAGSLGW
LGWRSDSAQQLLADYRTQIGERRQVRLADGTSLLLNTNTSINVQFDSQQR
KVQLLWGEMLVSTAADPLQRPFRVFTRDAEVLALGTRFVLRSDEREEQVA
VLEHAVQVSLGAGLAPRRVEAGQQLAFSAGGFAALRPNDAAVGAWRQGSI
IAIDRPLGELLADLSRYRRGVVQCDPQIAGLKISGAFPIDDTDRALAALE
SGFSLQIKRYTRYWVRVCDSRVG
>PFL_1634 fleQ, sigma 54 dependent transcriptional regulator FleQ
MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSR
EVICVLIGTVNAPGALLGLLKTLSTWDEFLPVLLMGENSSIDLPEDQRRR
VLSTLEMPPSYSKLLDSLHRAQVYREMYDQARERGRHREPNLFRSLVGTS
RAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRRDAPFVP
VNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDM
PLPMQVKLLRVLQERTFERVGSNKTQGVDVRIIAATHKNLESMIEVGSFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAI
MSLCRHGWPGNVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQL
VDSLRSDLEERVAINGHAPDFAATAMLPPEGLDLKDYLGSLEQGLIQQAL
DDANGIVARAAERLRIRRTTLVEKMRKYGMSRREGDEQADD
>PFL_1636 fleR, sigma-54 dependent DNA-binding response regulator FleR
MAIKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEPFSLV
VSDVNMPGMDGHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADY
LVKPFEPRALLDLVARHALGGLGVGEDEGPVAFEPASAQLLELAARVARS
DSTVLISGESGTGKEVLARYIHQHSHRVNQPFIAINCAAIPDNMLEATLF
GHEKGSFTGAIAAQPGKFEQADGGTILLDEISEMPLGLQAKLLRVLQERE
VERVGARKPITLDIRVVATTNRDLAGEVAAGRFREDLYYRLSVFPLAWKP
LRERTADILPLAERLLAKHVNKMKHAAARLSAKAQECLLAYPWPGNVREL
DNALQRALILQQGGLIQPEDFCLAGPVACAPLPALAPVVQMAARGTAAEV
EVPAQESGGLGDDLRRREFQMIIDTLRSERGRRKEAAERLGISPRTLRYK
LAQMRDAGMDVEAYLFAT
>PFL_1635 fleS, sensory box histidine kinase FleS
MPQAAQMSPAPDTQGQSSSVEQASRLGLEQAFALFNQMSSQLTDSYSMLE
ARVTELKGELAVVSAQRMQELAEKERLANRLQNLLDLLPGGVIVIDGHGI
VTEANPAACELLGLPLEGQLWRNIIARSFAPREDDGHEISLRDGRRLSIA
TRSLDAEPGQLVLLNDLTETRHLQDQLARHERLSSLGKMVASLAHQIRTP
LSAALLYASHLTEQELPVATHQRFAGRLKERLHELEHQVRDMLVFARGEL
PLTDRLTPKSLLQSLQAAALTHVQDVAVRWQCDSHHGELLCNRDTLVGAL
LNLIENAVQASAGAARLKVHLYSRGDTLRLCISDSGSGIDAAVLERLGEP
FFTTKANGTGLGLTVVKAVARAHQGELSLRSRPGRGTCALVTLPLFSSVH
GVE
>PFL_3563 gacA, response regulator GacA
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLLKARELKPDV
VLMDVKMPGIGGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAG
YLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQPSSDSPFDALS
EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELT
LLAVRHGMVDASL
>PFL_4451 gacS, sensor protein GacS
MLKKLGIKGRVLLLTLLPTSLMALVLGGYFTWMQLSDLQTQLLQRGEMIA
EQLASLVAPAMGNHNTQMLERIATQALEQQDVRAVSLLAPDRSLLAHAGP
SMLNPPPAGNSSHMMQRSGSDATRYQLPVFGRHRNLAGDLIPDESDRLLG
WVELELSHSGMLLRGYRSLFASLLLIAAGLAGTALLAVRMGRTINNPLTQ
IKQAVAQLKDGNLETRLPPLGSQELDELASGINRMASTLQNAQEELQHSI
DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPL
NGILGFTHLLQKSELTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGK
LVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR
LKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGIGLSN
QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGE
GSEFWISLNLPKTRDDAEDLPGPPLLGRRVAVLENHELARQALQHQLEDC
GLEVTPFNTLEALTNGITGVHQSEQAIDLAVLGITTNDMSPERLSQHIWD
LEHLGCKVLVLCPTTEQTLFHLSVPNPHSQLQAKPACTRKLRRALSDLVT
PRRARSEPEETLSSRAPRVLCVDDNPANLLLIQTLLEDMGAKVLAVDNGY
AALNAIQTEPFDLVMMDVQMPGMDGRQSTEAIRQWESERHGTPLPIVALT
AHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKWTGLALRNQGPERAS
ERPELGLELQVLDQDEGLRLAAGKADLAADMLAMLLASLDADREAIKAAR
AANDQNALIERVHRLHGATRYCGVPQLRAACQRSETLLKQEDAKAFAALD
ELDHAIGRLAAEARTNA
>PFL_0510 glnE, glutamate-ammonia-ligase adenylyltransferase
MSLPALAPVPAILLPLVSRAEQSLRGAVAALEGDPGLADWSTERWAEFAR
VGAASDFVIEQSLRDPLMLLELVRSGELDRPFAPGELCAQIAAAVQAAES
EDQLGRVLRRQRTRQQVRIIWRDLTRQADLVQTCRDLSDLADACIDQAYQ
WLYLRHTQQFGVPTGGRSGEPQQMVILGMGKLGAVELNLSSDIDLIFAYP
EGGETVGVKRPLDNQEFFIRLGQRLIKALDPMTVDGFVFRVDMRLRPYGS
AGALVLSFNALEQYYQDQGRDWERYAMIKARVVAGDQAAGAQLLDMLRPF
VYRRYLDFSAIEALRTMKQLIQQEVRRKGMADNIKLGSGGIREVEFIAQA
FQLIHGGRDLSLQQRPLLKVLGTLEGQGYLPPAVISELREGYEFLRYTEH
AIQAIADRQTQMLPDNPQDQARIAFMLGFADWNAFHEQLMHWRGRVDWHF
RQVIADPDEDEGAESEVVVGGEWLPLWEEAQDEEAACRQLQEGGFVDAPK
ALRALAGLRGSPQLRAMQRLGRERLDAFIPRLLAQAVEHANPDLVLERVL
PLVEAVARRSAYLVLLTENPGALRRLLTLCAASPWIAEQITRFPLLLDEL
LNEGRLFKPPLAPELAAELRERLTRIPEDDLEQQMEALRHFKLAHRLRVA
ASEIAGSLPLMKVSDYLTWLAEAILEQVLALAWRQTVSKHGAPLRTDGTL
CDPGFIIVGYGKVGGIELGHGSDLDLVFIHDGDPQAETDGPKPIDGAQFF
TRLGQRIIHLLTTQTNSGQLYEVDMRLRPSGASGLLVSSLGAFARYQENE
AWTWEHQALVRARVLVGSQDVGQAFEKVRAAVLGKKRDLPKLRQEVSEMR
AKMRDNLGSRLTAAGTAANAFEATAPFDLKQDAGGIVDIEFMVQYAALAW
SEEHPSLLRYTDNIRILEGLEQVGLMPASDASLLREVYKAYRSAAHRQAL
QNEAGIITGDQFVTERREVLRIWRELGLS
>PFL_0377 glnG, nitrogen regulation protein NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQAPD
VIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAF
EYLPKPFDVDEAVSLVKRANQHAQEQQGLEVAPTLARTPEIIGEAPAMQE
VFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAA
IPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQ
TRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFH
RLNVIRIHIPRLSDRREDIPTLARHFLSRAAQELAVEPKLLKNETEEYLK
NLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWE
QALRQWADQALARGQSNLLDSAVPSFERIMIETALKHTAGRRRDAAVLLG
WGRNTLTRKIKELGMKVDGGDEDEGEEG
>PFL_2360 glnH, amino acid ABC transporter, periplasmic amino acid-binding protein
MLTRTLKGLLAASTVAAAALLCPAAAQADDLQSIRESREIRIAMSGQYSP
FSFANEQNQIVGFDASISEALAQRLGVKVSIVTTPFDGIIAGLLAKKYDA
IIASMTITPERLRAVDFVGPYYHAGRTIVVKEDSPINSLADLKDVTVGVT
LGDAHDKWARARGNLKVKTYKGLPEMLVDLEAGRLDALVMDSVPVLVAVK
ETGQKVRIITPPDSDGGVEGMGIALRKNNPELKAAMQQALNDMLADGSYE
KISMKWIGKDIR
>PFL_6153 glnH, amino acid ABC transporter, periplasmic amino acid-binding protein
MNFKPLLALGLTVLAASSQAFAGATLERIEQKKELVGVLMESYPPFSFLN
EQNQLDGFDVDVAKAVADKLGVRLRLETPSWDVIAAGRWSGRYDICICSM
TPSKARAEVFDFPVQYYASPAVIVVNAKDERIHGAQDLSDKKVGLTAASS
YEGYLNKNLVIEGAEDTHLQYPFENVQIAPYDTDNVAFQDLGLGPGVRLD
AILTNLVTAQPRLTQDSRFKLAGEPLYAEPNSVAIEKGDAQWNAKVREVF
AQLKQDGTLSKLSQKWIGADISQ
>PFL_2282 glnH, amino acid ABC transporter, periplasmic amino acid-binding protein
MHTRTRVLAPAVFAFCCALGLGLSASAQAEPLYKVGATATGIPFTFLDVK
SQSIEGMMIDAARAVGKAGGFAVDIQQTTFAALIPSLTSNKIDIISAAML
RTPVREKVVQYSDPVFSYGEGLIVKADDASDYRRMEDLAGETVGAQVGTV
FIDELNKRGIFKEVRGYDSIPDLMRDLALGRIKAGFADRPILAYQLAQGT
QNKVRLVKGYQPVVMGDVCLIVRKGDAQTLAEVNRGIAVIKADGTLDRII
EHWKLN
>PFL_0415 glnH, amino acid ABC transporter, periplasmic amino acid-binding protein
MKKYLSLLLAGATALLAVNTAQAGAIDDAVKRGTLKVGMDPTYMPFEMTN
KRGEIIGFEVDLLKAMAKSMGVKLEMVSTGYDGIIPALLTDKFDMIGSGM
TLTQERNLRLNFSEPFIVVGQTLLIRKDLEGTIKSYKDLNSADYRITSKL
GTTGEMVAKKLIAKAKYHGYDNEQEAVLDVVNGKADAFIYDAPYNVVAVN
KVGNGKLVFLDKPFTYEPLAFGLKKGDYDSINFINNFLHQIHEDGTYDRI
HDKWFKSTEWLKDME
>PFL_0378 glnL, nitrogen regulation protein NR(II)
MTISDPLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQF
ISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPIL
SNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGG
IRGAAQLLARELPEESLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLALT
NIHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVR
NAMQAISSQNEMRLGRITLRSRTMRQFTIGHVRHRLVSKIEIIDNGPGIP
AELQDTLFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSI
FLPLEQGAPST
>PFL_4620 gltR, DNA-binding response regulator GltR
MSSVSKSILLVDDDQEIRELLETYLSRCGFQVRSTADGAGFRLALNEAPS
DLVILDVMLPDEDGFSLCRWIRQHPKRSQVPIIMLTASSDEADRVIGLEL
GADDYLGKPFSPRELQARIKALLRRVQFTQERVVGEVLCFDEWRLDVISH
RLFHNDGEEVILSGADFALLKLFLDHPQEILDRDTIGNATRGRDLMPLDR
IVDMAVSRLRQRLRDTEKPPRLIRTVRGSGYQLAANVVAGSGH
>PFL_4294 kdpD, sensor histidine kinase KdpD
MSDSGRADALLAELPRDGRGRLKVFLGAAPGVGKTYAMLQAAHSQLRQGV
KVLAGVVETHGRAETEALLSGLPQQPLVRSEYRGVLLEEMDLDGLLKAKP
KLVLVDELAHSNAPGSRHAKRWQDIQELLAAGIDVFTTVNVQHLESLNDQ
VRGITGVQVRETLPDWVLQEAYELLLVDLPPRELLERLRDGKVYVPEQAR
AAIDAFFTQTNLTALRELAMQTAAAQVDNDLAQGYRQLGQAAPAVRGRLL
VGIDGDAQAERLVRHASRVAQRRHLPWSLVHVDNGRLRDEQARLRLQAAQ
QLAERLGGEVVLLRAGEVAKTLIQHAAERRASLLLVGQSRRRWRRRWFGG
GLAARLLRNADGLEINVLDSEPQPHQPGLRVKHSLIWFDYVLAVLATLLA
SALAWGVASVLPLPNISLVFLAAVLLVAVRSSLGPALACAALSFLSYDFL
FIPPNFSLAIQREEDVLTLLFFLLMAALTGNLAARQRRQLQALRDTQEET
GELLDLSRKLTAATDRQAVISAAAQHLNGRDELRVCLINRDGQGGWKVET
GGSPQFSEAERAAADWAWQHDQPAGLGTGTLPFGRWWWWPLSVDDGPLGL
LGVCPREGEEFSGQRRRLLTALSQPLAQALARARLAEDLEAARLHGETEQ
LRSALLASVSHDLRTPLTSMRGSIDSLLALGEAIPLEDRRELLEGTRDEA
ERLDRYIQNLLDMTRLGHGALKLARDWVAPGDIVGSALNRLRAVLAPLQV
ATELPADLPLLYVHAALIEQALVNVLENAARFSPLQGHLQLKVSASEQEL
SFAVSDEGPGIPEDERAKIFDMFYTAARGDRGGQGTGLGLAICQGMVGAH
GGHISVAEGIGGKGTCITLHLPLQTQPELESDL
>PFL_4570 kdpD, sensor histidine kinase KdpD
MPPRDGRPDPDALLEKLQQEEQAAQRGKLRIYFGSNAGVGKTCAMLTAAR
NEVAQGRDVVAGVVETHGRRETAELLQGLQVLERHRLMHRDYALPEFDLD
AALARHPAVLLVDELAHSNVPGSRHPKRWQDVEELLRAGIDVWTTLNVQH
LESLNDIVSGIIGIRVRETVPDHLFDEAHEVLVIDLPPDDLLRRLKDGKV
YLGPQAERASRHFFRKGNLLALRELTLRRTADRVDAQMRDYRRERSINAL
WPARERLLVGIAGDPADERLVREAARLAQKLEADWMVVHVASAQRRGAGA
ARYAAAMKTLALAAEFGAETATLPGMDVAEALVACAREHNANRLVLGHYP
RKVWQFWHQSVSDRISRQHPEIDQIVIANGPLSRRPAPVDKPEAGLPPSR
APAYLWASLACFAATAVAALLLKVFDPANVVMLFLLTVVLVALRYGRGPG
VWAAMLAVLCFDFFFVQPVWSFTVNDTQYFFTFALMLGIALITGQLTARL
RHEARTAAAGERRATSLAGLARELSAALTEEQICAVALRTFSGVFEARVG
LALPDAENRVRALSANTLAIDESIAQWAYDHDQPAGRGTDTLAAAKGCYL
PLKAPMRVRGVLVLEAEDAERLKEPEEQRLLEACMSQLAIALERVHYVEV
AQSTVLQMEGERMRNTLLAAISHDLRTPLTTIIGAADAALPHAAQGPLKH
LLAGIHDQASSMQRLIENLLDMARMQERGVRLNRQWNSLEEIVGSALRQL
REPLAGHQLRVAMAPQLPLVEVDALLLERVLVNLLDNAAKYTPAGTLVQI
SARQVDQQIILQVSDSGPGCPKGSSPASLFEAFSRGQQESAVAGIGLGLA
LAKRIVEAHGGRIEAQPHADAGLSFVITLPAGQPPSMETL
>PFL_4569 kdpE, KDP operon transcriptional regulatory protein KdpE
MSSARILIVEDEANIRRFVGIALEDEGFQVFEADSVKRALIHAASRQPDL
VIVDLGLPDGDGKQLISELRGWLAVPILVLSARDREDEKVAALDAGADDY
LVKPFGVPELLARIRAQLRRHGQSGTAAATSKVAFGAIEVDLATHEVRRE
GLPVHLTPIEYRLLCALIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHM
AHLRQKLEADPAQPQHLITELQVGYRLVGL
>PFL_4293 kdpE, KDP operon transcriptional regulatory protein KdpE
MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALNKPD
LLVLDLGLPDMDGQQVLREFREWSAVPVLVLSVRASELQKVEALDGGAND
YVTKPFGIQEFLARIRALLRQAPSGEVQEAALQVGPLTVDLAYRRVLLDG
VEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWGPTHTEDSHYLRIVVG
HLRQKLADDPTRPRFIVTEAGVGYRLLGADS
>PFL_0090 kinB, alginate biosynthesis sensor protein KinB
MKLAMKLRTRLFLSISALITVALLGLVLGLVSVMQMASTQESLIRNNFIT
LDLGLKLRQTLGDQLIIMLGKQPDRAALETSRQHYLELLDEGIAHDRQTQ
VQSGFQQARSDYLSFYQAFERNSTASGLHDNNELTERFNALRGGLINEHK
RALDNISQVEQQARNRAWLVAGLLGLVALAVLIIGFVTAHAIARRFGGPI
EALAKAADKIGEGNFDVTLPISAAAEMNLLTRRFGIMAEALRQHQATNVD
ELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDQERLGQG
LGSALQRPELDEQLQLVLRGGNLERAPDDLDIEVDGESRLLTYSLTPVSH
TQGHILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGMHMAFGLL
QERLHFPEESRETDLLNTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLAP
CPLEELLVQAQGRFSEQAQQQGIDLLLEIQAPLPRLHADRAQLERVLDNL
IDNALRHTASEGQIRLQARRHGERVIVSVEDNGEGIAYGQQGRIFEPFVQ
VGRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYLALPL
>PFL_1949 lexA, LexA repressor
MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAEEHLKAL
ARKGAIEMTPGASRGIRIPGFEAKADDTLPIIGRVAAGAPILAQQHIEES
CNINPTFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVA
RIGDEVTVKRFKREGSKVWLIAENPEFAPIEVNLKDQDLVIEGLSVGVIR
R
>PFL_3700 lexA, LexA repressor
MTTLSPRRSAILTFIRERIADHGQPPSLAEISQAFGFASRSVARKHVLAL
TEAGFIEVNPHQARGIRLLNQPRRPELLEIPVLGRVAAGAPIGVDADIHG
QLLLDPGMFSRTPDYLLRVQGDSMIDDGIFDGDLVAVRRSSEVRNGQTVI
ARLDGEVTIKRFERKGQGIRLLPRNPAYQPIEVTADHELFIEGVFCGLVR
QG
>PFL_5345 morA, developmental regulator MorA
MFNVTSPKPARAAAPGPAYPMRGTLKGALATLVLLLLALLFWQLLDQLQQ
TRQDQRQHAIDYSADLADHLSLNLALNAQIALNLLPIIEAPQDSQQQQQL
LQKLQRSLPDVRSFALLDSKGQILSDSATDSQDALWLAELVQRSRAQRYY
YSNPADGSVVHVLLHQSSGGSRGYWVLRLAPSFLQTLVRQSEEGFKPTWV
IENRLSHQVIKRDERSTSTPGMLDPDEMASSVLLVPLSNSDWQLRGLFDQ
RAVLEALLPAFIGKCLLGLAFSLLPVIALLNMRRRQRQLHEGRRRYQDIF
EGTGVALCVMDISGLPGLLDKHNLHNSDQLKRWQASDPGHRLQLLSELRI
TEVNQVALRLLNVESSEQAWQLLIEGSPKNGNAIGSQLLEAVINQQKQLE
LEIKLSDAQGNDQHLWLVLRLPEAIADYSAVILSISDITSRKLIELSLLE
REGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNKTELHQMGEY
FWEILLHPEDADLYHRLRQEQRHSAYAQLLQCQLRFRHRSGQWRRFEIRE
QALARDRYDQVTRIIGVAKDITDQIEASESLRDSEQRYRMLAESISDVIF
STDSKLSLNYVSPSVHAVLGYDVEWIFQNGWQSTIANPQQLSGIYTLMDR
VSKALDKPEQLAQLRSQVQTQLFLFDCLRADGRKIPIELRLVLVWDEHGA
FEGVLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEA
FSRVSGYAVSQVLDQLPNMLTVDDQQEAHLRYVLKQLNQHSTWEGEVWLK
RRNGEHYPAWVGITAVLDDEGDLASYVCFFSDISERKASEQRIHRLAYYD
ALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFKPINDSLGHAA
GDRMLKEMATRLLGCVDDDDTVARMGGDEFTLLLQPRSSREMALNRAIHV
AEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYH
AKERGKNNFQFYQADMNASALERLELESDLRHALEQEEFVLYYQPQFSGD
GKRLTGAEALLRWRHPRRGLVPPGDFIPVLEELGLVVDVGDWVISEACRQ
LKSWHQAKVRVPKVSVNISARQFSDGQLGMRIATILKDTGLPPACLELEL
TESILMREVSEAMQILDGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLK
IDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREH
GCDEVQGYLFGRPMPANRFEAQFSNDALFMFD
>PFL_1449 mucA, sigma factor algU negative regulatory protein MucA
MSREALQESLSAVMDNEADELELRRVLNAVDEVETRETWARYQIARAAMH
KELLLPRLDIAAAVSAALADEAVPAKASRGPWRSLGRLAVAASVTVAVLA
GVRLYNQDEIAGVELAQQTGQPTLATPQVKGPAVLAGYNESSEATGPMAN
GVLQGQPGWHDQRLPSYLRQHAQQAALKGTESALPYARAASLENR
>PFL_1450 mucB, sigma factor algU regulatory protein MucB
MRAIPLLTLLLSGWFVVPAHADEAQDWLQRLGQAEQQQSFQGTFVYERNG
SFSTHNIWHRVQDGKVRERLIQLDGSAQEVVRVDGRTQCVSGELVAGLGD
SPDGAARALDPQKLKNWYNLAVIGKSRVAGRQAVIVSVTPKDQHRYGFEL
HLDRETGLPLKSLLLNDKGQLLERFQFTRLDTADVPDDVELRPSAGCKPV
SLDSDKASAVKTVQTWHSDWLPPGFELTSSSARKDPETKSMVNSLLYDDG
LARFSVFLEPLNGATVTDTRTQLGPTVAVSRRLTTPDGEMMVTVVGEIPI
GTAERIALSMRSDTTAKQ
>PFL_0276 ompR, DNA-binding response regulator OmpR
MSSTVQTAEGEKILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLL
GREVFNLVVLDLMLPGEDGLTACRRLRSANNQIPIIMLTAKGDELSRIKG
LELGADDYLAKPFNPDELMARVKAVLRRQSAPVPGAPGSEDESVTFGDYE
LSLATRELKRGNEVHMLTTGEFAVLKALVMNARQPLTRDKLMNLARGREW
DALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDGTATK
>PFL_2665 pfeR, transcriptional activator PfeR
MTPNLLLVEDDARLRDDLDLHFRQRGFTVTTCTDGRQGLAAVRAGHFDLV
LLDIMLPGMDGLALLETLRQEQGTPVMLMSALGAEQDRITGFTRGADDYL
PKPFSLAELDARADALLRRMARVQQLQATRQDPHLSFDDQAQDVLHQGRA
AGLTGSEYRLLATLREHPGETLSKPFLYQHVLHRIYTRLDRGLDVHVCNL
RRKLADLGVQHLQIQAVRGAGYILVEAERH
>PFL_2664 pfeS, sensor protein PfeS
MRRHPLLWKLALLQIGFCLLLTWIIWTWGLSAERSTYFLDPADRQYLASY
AQQAEHAWRQGGVAAVDEFQRQLATREDTWVAVIGDRLQSLGSTPLTAEE
ASHLTFMRKLDWPMSRRLQDELPYVSIEFPEHPEQGRLVLQLPERLLPSG
LTPWTHVLSHGVVPTLLAALLGLLLYRHLVLPLNRLRDRADALRADDLES
QGLGTPLVNRHDELGELALAFEHMAERLRQSLAQQRLLLRTLSHELRTPL
ARLRIAHDSRLPPEQLRQRLDREIADMQRLLEDTLDLAWLDTERPQLPTE
AVQVLSIWEALRQDACFESAWDAERLPCLLDAECRVQVHLDSIAQALENL
LRNAIRYSPAGGRVSLRGWREGGYWHLCLEDQGPGVAEQDLQRIFQPYQR
LDSAQGDGFGLGLAIARRAVELHQGRIWASNGHPGLCMHLLLPAA
>PFL_6108 phoB, phosphate regulon transcriptional regulatory protein PhoB
MVGRSILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDL
ILLDWMLPGTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGA
DDYITKPFSPRELVARLKAVLRRAGPTDGEAPIEVGGLLLDPISHRVTID
GKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVWGGNVYVEERTVDVHI
RRLRKALGDAYENLVQTVRGTGYRFSTKA
>PFL_1027 phoH2, PhoH-like protein
MDDHGRSSSSNQPILYVLDTNVLIHDPNALLNFEEHHVAIPMTVLEELDK
LKSGHHSVAAECRQAIRLIDKTLGEASPEDVELGVPIQRGKSGPKGLLSI
LMSKRNEPTSLLPDNLNDNIIINQLIDLHARNKDLPVVLVTKDINMRLKA
RACGIAAEDYSTDQLVDDVSLLPNGFHNMSGSFWDRVSKVETRQDHGRTW
HQVQLIDNLPAVHINEFIIDEQGFVGWIKEIRADVLLILDLHQEPLLHQE
AWGLKPRDIYQGLALYALLDPDIHLVNLSGAAGSGKTILALAAAIEQTMV
SKRYRRIIATRSVQGLDQEIGFLPGTEAEKMEPWLGAITDNLEALHMDDE
NTHGSVDYILSKVPLQFKSLNYIRGRSFQQSLILIDECQNLTPHQMKTII
TRAGAGSKVVCLGNLAQIDTPYLSATSSGLTYLTERFKDFPNGVHITLQG
VPRSILAEYAESHL
>PFL_4470 phoP, DNA-binding response regulator PhoP
MKLLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVI
DLGLPGMGGLDLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVV
KPFQFEELDARLNALLRRSSGFTQSTIIAGPLLLDLNRKQASLDEQPLAL
TAYEYRILEYLMRHHQQVVAKDRLMEQLYPDDDERDPNVIEVLVGRLRRK
LEGPSGFKPIDTVRGLGYLFNERCR
>PFL_4469 phoQ, sensor protein PhoQ
MIRSLRLRLMLAATTLAVLFMLALLPAMQGAFSLALQDSIEQRLASDVTT
LISAARIENNRLQMPAQLPDERFNLADSRLLGYIYDREGHLVWRSRATQE
ENINYRPRYDGRGNEFARIREANGQEFFVYDVEIKLLGGKSAAFSIVALQ
PVREYQQTLEGVRENLYLGFGAALLVLLALLWLGLTWGLQALRRLSQELD
QIESGTRQSLSEEHPRELLRLTGSLNRLLQSEREQRSRYRDSLDDLAHSL
KTPLTVLQGVSEDMAQRPQDREQAWVLQAQIERMSQQISYQLQRASLRKS
GLVRHQVRLRPVLQSLCDTLDKVYRDKQVRVSFDLPERCYLPIEHGALLE
LLGNLLENAYRLCLSSVRISVRETLEGSELCVEDDGPGVPPDQRARILQR
GERLDRQHPGQGIGLAVVKDIIESYGAQLTLGDSALGGAAFRIHFPAL
>PFL_6109 phoR, sensor histidine kinase PhoR
MNQNWHGTLIRHMLLLITGCLLVGLISGYYGWSLAAGLGIYLAWTLKQLL
RLHEWLRLHQPDEAPPDGYGLWGEVFDSIYHLQRRDQRVRGRLQAVIDRV
QESTAALKDAVIMLDSDGNLEWWNRAAETLLGLKTPQDSGQPVTNLVRHP
RFKEYFEQDSYAEPLEIPSPANDRVRIQLYITRYGNNEHLMLVRDVTRIH
QLEQMRKDFIANVSHELRTPLTVICGYLETLLDNVEEVNPRWSRALQQMQ
QQGGRMQTLLNDLLLLAKLEATDYPSDNQPVPIDVLLQSIKSDAQALSGE
RNQRITLEADASVQLKGSEAELRSAFSNLVFNAVKYTPAEGNIRIRWWGD
EQGAHLSVQDSGIGIDNKHLPRLTERFYRVDSSRNSNTGGTGLGLAIVKH
VLLRHRARLEISSVLGHGSTFTCHFVPAQVKKNRTQSLTDQR
>PFL_5827 pilG, type IV pilus response regulator PilG
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDH
HPGIIFVDIMMPRLDGYQTCALVKNNSAFKSIPVIMLSSKDGLFDKAKGR
IVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ
>PFL_5826 pilH, type IV pilus response regulator Pilh
MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALAREEKPDAVL
MDIVMPGLNGFQATRQLTKDAETSHIPVIIITTKDQETDKVWGTRQGAKD
YLTKPVDEETLIKTLNNVLAG
>PFL_5825 pilI, type IV pilus biogenesis protein PilI
MSQSQTAFELLLEIDQRCRLLAADLPSQETRQHSWSGIGFRLGEHWYVAA
MGEISEVLHEPRYTLLPGVKPWVKGVANLRGRLLPIMDLCGFFGHELSPL
RKQRRVLVVEYKELFAGLLVDEVAGLQHFAQDSLEPGITDFADAAVNPYL
QGQFRRDQVWQVFSPFALARSPGFLEVAA
>PFL_5824 pilJ, type IV pilus biogenesis protein PilJ
MTKAKTGKPLEGSRSRSQIIVLFIALIVFIMLLFANFAYLNTQATYDKQY
IGHAGELRVLSQRIAKNATEAAAGKAAAFKLLGDARNDFARRWGYLKKGD
PDTGLPGAPVALRQEMRAVQLDWEKLLKNTDAILASEQTVLSLHQVAATL
AETVPQLQVEYEKVVEILLQRGAPAAQVAMAQRQSLLAERILGAVNTVLA
GDENAVQAADAFGRDAARFGQVLNGMLQGNPGLKISQVEDPDARGRLAEI
SELFEFVSGSVDEILETSPELFQVRESASNIFSLSQTLLDEASLLASGFE
NLAGSRKLDTIGGYVLGLLALASIILIGLVMVRETNRQLRETAEKNERNQ
NAIMRLLDEIEDLADGDLTVTASVTEDFTGTIADSINYSVDQLRDLVATI
NLTAGQVAGAVQETQATAMQLAEASEHQAQQISEASTAINEMAQSIDQVS
ANAAESSAVAERSVEIANKGNEVVHNTIHGMDNIREQIQDTAKRIKRLGE
SSQEIGDIVSLIDDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRL
AERSSAATRQIETLVRAIQTDTNEAVISMEQTTTEVVRGARLAQDAGVAL
EEIEGVSKTLAALIQSISNAAQQQTSSAGQISLTMNVIQQITSQTSSGST
ATAESIGNLAKMASQLRRSVSGFTLPATRGPAPNDNR
>PFL_0913 ptsN, PTS IIA-like nitrogen-regulatory protein PtsN
MIRLESILTPGRSLVNVPGGSKKRALEQIANLISREVPDLEMQDVFESLI
AREKLGSTGFGNGIAIPHCRLKGCESPISALMHLDAPIDFDAIDGAPVDL
LFVLLVPEAATDAHLELLRQIASMLDRKEVRDRLRSATSNEALYQVVLDE
QNGQ
>PFL_3614 ptsN, PTS system, nitrogen regulatory IIA component
MCPHRASARDLITSCPLRIPLSSQTSRRWATGAWRQRAGGWRSKEFVKSA
RPPLPAPGKCASIACKPSLKLPEKPMSKVARYLQVEDILLAVNVTNKQRL
FEQVGQHLQETRQLPADWVAASLWRRELAASTAIGEGVAVPHARLAELDR
IHALYLRPQTAMAFAAPDQQPVSDILVLLVPAPADQQHLDLLADTARLFT
NPRFRQALLRCTAPMQVKQLFDHW
>PFL_5899 ptsP, phosphoenolpyruvate-protein phosphotransferase PtsP
MLNTLRKIVQEVNSAKDLKAALGIIVLRVKEAMGSQVCSVYLLDPETNRF
VLMATEGLNKRSIGKVSMAPNEGLVGLVGTREEPLNLENAADHPRYRYFA
ETGEERYASFLGAPIIHHRRVVGVLVIQQKERRQFDEGEEAFLVTMSAQL
AGVIAHAEATGSIRGLGRQGKGIQEAKFVGVPGSPGAAVGSAVVMLPPAD
LDVVPDKHVTDIDAELALFKSALEGVRADMRALSEKLATQLRPEERALFD
VYLMMLDDASLGSEVKAVIKTGQWAQGALRQVVTDHVNRFELMDDAYLRE
RASDVKDLGRRLLAYLQEERQQTLVYPDNTILVSEELTPAMLGEVPEGKL
VGLVSVLGSGNSHVAILARAMGIPTVMGLVDLPYSKVDGIQMIVDGYHGE
VYTNPSDVLRKQFADVVEEERQLAQGLDALRDLPCITPDGHRMPLWVNTG
LLADVARAQKRGAEGVGLYRTEVPFMINQRFPSEKEQLAIYREQLAAFHP
QPVTMRSLDIGGDKSLSYFPIKEDNPFLGWRGIRVTLDHPEIFLVQARAM
LKASEGLNNLRILLPMISGIHELEEALHLIHRAWGEVRDEGTDVPMPPVG
VMIEIPAAVYQTKELARQVDFLSVGSNDLTQYLLAVDRNNPRVADLYDYL
HPAVLQALQNVVRDAHAEGKPVSICGEMAGDPAAAVLLMAMGFDSLSMNA
TNLPKVKWMLRQVSMTKAKELLAEMMTIDNPQVIHSSLQLALKKLGLARM
INPASSKTL
>PFL_2528 pupR, sigma factor regulatory protein PupR
MHPSRRQPGLAVNHPLSSNANAEPQSIDIAMAEQAMQWQLDLQEPQVSAA
TLAAWHRWRQAHPLHEKAWQRAETLAQRLQQVRSQGHSELARATLVPNLG
RRRALKQLGLLLVTGAGAWAARDTALVQDWSADYSTRVGQQRRITLADQT
RVQLNTDTAIALRFDREQRRIKLLRGELLLTLARQDSLPALHVETAEGWI
ETSTARFSVRQLAGRTELSVYQGNLTLRPRDGGQPALSLGAGEQARFNRQ
GLLLRQAQNATQPAWSQGMLVAQGQALAQFLEELGRYRHGHLGCDPSLAQ
LKVSGTFPLADTDRVLFAVARTLQLEVRQFTRYWVTLKPRTALS
>PFL_4446 relA, GTP pyrophosphokinase
MVQVRAHQPINTDGSINLEAWLDHTVSVDMALDREALKEACEFAREAELQ
HIATKNLSPEDVSSFSTGLEIAEILADLKLDQDSLVAAVLYRGVREGQIQ
LPAVSQRFGPVVTKLIDGVLRMAAITASLSPRQSLVLGTQAQVENLRKML
VAMVDDVRVALIKLAERTCAIRAVKSADEEKRNRVAREVFDIYAPLAHRL
GIGHIKWELEDLSFRYLEPEQYKQIAKLLHERRLDRERFISDVMNQLQNE
LKATGVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEMRDC
YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIR
THAMHEEAELGVCAHWKYKGTDVKSGSNHYEEKISWLRQVLEWHEELGDI
GGLAEQLRVDIEPDRVYIFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCR
GAKINGRIVPLNYSLQTGEQVEIITSKHGTPSRDWLNPNLGYVTTSRARA
KIVHWFKLQARDQNVAAGKTLLERELSRLGLPQVDFDKLAEKANMKIAED
MFAALGAGDLRLAQLVNLAQQLVEPERGNEQLELIPRKAAGYKPGKRGDI
QIQGVGNLMTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLAGR
EPERIIQVSWGPVPVLTYPVDIIIRAYDRSGLLRDVSQVLLNERINVLAV
NTRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
>PFL_3268 rpeA, sensor histidine kinase RpeA
MLRILVRLYLITIIAFSAAIYLIPDLVIKVFHERFLDYNLDQSRGLQSLI
VKQFRALPAQQWPTLVKEMDEEFHPLQVALVRIDDPDFSDYERERLQRGE
KVVRLGDWGWRTLAVSPLDEQLAVKLVVPPDPLDVNLLYWSINVLIVAVL
LACLLLWVRPHWRDLERLKRTAERFGKGHLGERTQLPASSNIGSLANVFD
TMAGDIEKLLNQQRDLLNAVSHELRTPLTRLDFGLALALSDDLPAASRER
LQGLVAHIRELDELVLELLSYSRLQNPACLPEQIEVSLDEFIDSILGSVD
DELESDIVIDVLLHGALERFTLDPRLTARALQNLLRNATRYCEKRIQVGV
LVSDDGCEIWVDDDGIGIPDDERERVFEPFYRLDRSRDRATGGFGLGLAI
SRRALEAQDGTLTVEASPLGGARFRLSLPPPPRA
>PFL_0925 rsbV-2, STAS domain protein
MSESAVRLGDAGELLISGVLDYRSGPGLRKQGQALIKSSQAPALVLDCSA
VEKSSSVGLALLLAFMRDGQALGKAVSVRALPEDMREIAEVSGVTEIFAH
PQ
>PFL_2302 rtcR, sigma-54 dependent transcriptional regulator RtcR
MLINRLELIHGLDARDVSLAERVANDVRQVSPETEVRLHPMGLNNPWDFE
EVYGALHDFTSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARL
IQTSPARRRDPDQHATGTHALIDLDLSRYDRIASRFAHKRLEGLAFLKSG
IATRNPAFNRSIEQIERVAVRSRAPMLLIGPTGAGKSFLARRIYELKRGR
HQVQGRFVEVNCATLRGDGAMSALFGHIKGAFTGAQNAREGLLRAADGGM
LFLDEIGELGLDEQAMLLKAIEEKRFFPMGSDQEVQSDFLIIAGTHRDLR
GRVAQGLFREDLYARINLWTFNLPGLAGRREDIEPNIDFELERHAREQGQ
LVRFNLEARRRYLAFASSSEAAWLGNFRELSASITRMATLADSGRIDQAQ
AEEEIQRLRHAWGLESQEDELQKLLGDDVELDLFDRLQLKAVIAECRRAD
SLSEAGRRLFGVSRLGKANPNDADRLRKYLARFGLDWKQL
>PFL_1743 sixA, phosphohistidine phosphatase SixA
MKLWVLRHGQAESHAPTDAQRNLTAHGREEVLGSAAHLIGQPIAAILASP
YVRAQQTAQLVREALGFEGEIRTVPWLTPEANPLQVLEQLDSADNLLLVS
HQPLVGNLIGLLQHGHLRDPQPMNTASLAELEGDWPLAGLMTLNAVTHP
>PFL_6063 spoT, guanosine-3,5-bis(diphosphate)3-pyrophosphohydro lase
MPSIDALADRLSTYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPL
AVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV
SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVL
SGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ
AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGK
RRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA
NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPK
GTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME
LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAP
GARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS
SLEKVPAERIQAILQEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQL
PSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN
ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAAD
GNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR
A
>PFL_1441 tctD, DNA-binding response regulator TctD
MRVLLVEDHLQLAESIAQALKSTGLTVDVLHDGVAADLALGSEEYAVAIL
DVGLPRMDGFEVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLA
KPFELTELEARVKALLRRSVLGGERQQRCGVLAYDLDTRRFTLGEELLTL
TSREQAVLEALIARPGRVMSKEQLASQVFGLDEEASPDAIEIYVHRLRKK
LDGHAVAIVTFRGLGYLLESRDA
>PFL_0388 typA, GTP-binding protein TypA
MLIAASICQHTESSDRDTQVIENLRNIAIIAHVDHGKTTLVDKLLRQSGT
LERNELNDERVMDSNDQEKERGITILAKNTAINWNGYHINIVDTPGHADF
GGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGLRPIVVINKVD
RPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGMDHTEMAE
DMTPLYQSIVDNVPAPSVDRDGPFQMQISALDYNSFLGVIGVGRIARGRV
KPNTPVVAIDVDGKRRNGRILKLMGHHGLHRVDVEEAAAGDIVCISGFDE
LFISDTLCDPTAVEAMKPLTVDEPTVSMTFQVNDSPFCGKEGKFVTSRNI
KERLDKELLYNVALRVEEGDSADKFKVSGRGELHLSVLIETMRREGFEMG
VGRPEVIIREVDGVKQEPFENVTIDIPEDSQGKVMEEMGLRKGDLSNMVP
DGKGRVRLEYNIPARGLIGFRNQFLTLTNGAGILTSIFDRYAPMKSGHMS
GRQNGVLVSVETGKALTYSLETLQARGKLFVEHGQEIYNGQIVGLNSRDN
DLGVNPTKGKKLDNMRASGKDETIALVPPVRFTLEQALEFIQDDELCEVT
PKSIRLRKKILDEGERTRAAKKAKN
>PFL_5619 vfr, cyclic nucleotide-binding transcriptional regulator Vfr
MVAIAPTPKIKNLDKLLMHCQRRRYQAKSNIICAGDVSDSLYFIIKGSVT
ILIEDDDGREMIIAYLNAGDFFGELGLFEEAGHEQQRSAWVRAKVECEVA
EISYAKFRELSQNDPDILYVLSGQIAQRLRNTTRKVGDLAFFDVTGRVAR
CLLELCKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKDLEERNL
VHVKGKTMVVFGTR
>PFL_1135 wspR, response regulator WspR
MNDLQLDEFKTDENAAMVLLVDDQAMIGEAVRRGLANEENIDFHFCADPH
QAIAQAIRIKPTVILQDLVMPGLDGLTLVREYRNHPATQNIPIIVLSTKE
DPLIKSAAFAAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDAAYRAL
RVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQSQL
SLLMIDVDYFKTYNDTFGHLEGDEALRKVATAIREASSRPSDLPARYGGE
EFVLVLPNTSPGGARLVAEKLRQTVEALKIPHIAPVEGASLTISIGLSTV
TPQPNSHCRQLISAADKGLYLAKNNGRNQVGIE