Gene list
Applied filters:
COG category: Cell motility
Gene type: CDS
Genomic element: chromosome
Number of genes found: 114
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Phage Gifsy-1 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SC0105 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 123054 | 282 | + | 0.439716 |
NA | SC2596 | putative bacteriophage protein | SubName: Full=Putative bacteriophage protein; | chromosome | CDS | 2761217 | 1953 | - | 0.526882 |
NA | SC0275 | putative outer membrane protein, OmpA family | SubName: Full=Putative outer membrane protein, OmpA family; | chromosome | CDS | 315511 | 1305 | + | 0.594636 |
bcfA | SC0020 | fimbrial subunit | SubName: Full=Fimbrial subunit; | chromosome | CDS | 24470 | 543 | + | 0.521179 |
bcfB | SC0021 | fimbrial chaparone | SubName: Full=Fimbrial chaparone; | chromosome | CDS | 24972 | 828 | + | 0.509662 |
bcfD | SC0022 | fimbrial subunit | SubName: Full=Fimbrial subunit; | chromosome | CDS | 28426 | 1008 | + | 0.501984 |
bcfE | SC0023 | fimbrial subunit | SubName: Full=Fimbrial subunit; | chromosome | CDS | 29434 | 546 | + | 0.492674 |
bcfF | SC0024 | fimbrial subunit | SubName: Full=Fimbrial subunit; | chromosome | CDS | 29995 | 519 | + | 0.558767 |
bcfG | SC0025 | fimbrial chaparone | SubName: Full=Fimbrial chaparone; | chromosome | CDS | 30479 | 732 | + | 0.54235 |
cheA | SC1928 | sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheY | SubName: Full=Sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheY; | chromosome | CDS | 2039758 | 2016 | - | 0.550099 |
cheB | SC1924 | methyl esterase, response regulator for chemotaxis (cheA sensor) | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; | chromosome | CDS | 2035270 | 1050 | - | 0.559048 |
cheM | SC1926 | methyl accepting chemotaxis protein II, aspartate sensor-receptor | SubName: Full=Methyl accepting chemotaxis protein II, aspartate sensor-receptor; | chromosome | CDS | 2037336 | 1893 | - | 0.554147 |
cheR | SC1925 | glutamate methyltransferase, response regulator for chemotaxis | RecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; | chromosome | CDS | 2036316 | 867 | - | 0.527105 |
cheV | SC2314 | putative chemotaxis signal transduction protein | SubName: Full=Putative chemotaxis signal transduction protein; | chromosome | CDS | 2434922 | 1002 | + | 0.51996 |
cheW | SC1927 | purine-binding chemotaxis protein; regulation | SubName: Full=Purine-binding chemotaxis protein regulation; | chromosome | CDS | 2039234 | 504 | - | 0.525794 |
cheZ | SC1922 | chemotactic response; CheY protein phophatase | RecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; | chromosome | CDS | 2034208 | 567 | - | 0.585538 |
cpxP | SC3951 | periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresses | SubName: Full=Periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresses; | chromosome | CDS | 4203638 | 501 | + | 0.50499 |
csgA | SC1092 | curlin major subunit, coiled surface structures; cryptic | SubName: Full=Curlin major subunit, coiled surface structures cryptic; | chromosome | CDS | 1211715 | 456 | + | 0.513158 |
fimA | SC0582 | major type 1 subunit fimbrin (pilin) | SubName: Full=Major type 1 subunit fimbrin (Pilin); | chromosome | CDS | 648395 | 624 | + | 0.533654 |
fimD | SC0585 | outer membrane usher protein | SubName: Full=Outer membrane usher protein; | chromosome | CDS | 651732 | 2619 | + | 0.556319 |
fimF | SC4440 | putative fimbrial chaparone protein | SubName: Full=Putative fimbrial chaparone protein; | chromosome | CDS | 4751117 | 546 | - | 0.501832 |
fimF | SC0587 | putative fimbrial protein | SubName: Full=Putative fimbrial protein; | chromosome | CDS | 655382 | 519 | + | 0.552987 |
fimH | SC0586 | minor fimbrial subunit | SubName: Full=Minor fimbrial subunit; | chromosome | CDS | 654365 | 1008 | + | 0.516865 |
fimI | SC0583 | fimbrial protein internal segment | SubName: Full=Fimbrial protein internal segment; | chromosome | CDS | 649094 | 534 | + | 0.543071 |
flgA | SC1120 | flagellar biosynthesis; assembly of basal-body periplasmic P ring | SubName: Full=Flagellar biosynthesis assembly of basal-body periplasmic P ring; | chromosome | CDS | 1237485 | 660 | - | 0.578788 |
flgB | SC1121 | flagellar biosynthesis, cell-proximal portion of basal-body rod | RecName: Full=Flagellar basal body rod protein FlgB; | chromosome | CDS | 1238301 | 417 | + | 0.52518 |
flgC | SC1122 | flagellar biosynthesis, cell-proximal portion of basal-body rod | SubName: Full=Flagellar biosynthesis, cell-proximal portion of basal-body rod; | chromosome | CDS | 1238721 | 405 | + | 0.558025 |
flgD | SC1123 | flagellar biosynthesis, initiation of hook assembly | SubName: Full=Flagellar biosynthesis, initiation of hook assembly; | chromosome | CDS | 1239137 | 699 | + | 0.540773 |
flgE | SC1124 | flagellar biosynthesis, hook protein | SubName: Full=Flagellar biosynthesis, hook protein; | chromosome | CDS | 1239862 | 1212 | + | 0.552805 |
flgF | SC1125 | flagellar biosynthesis, cell-proximal portion of basal-body rod | SubName: Full=Flagellar biosynthesis, cell-proximal portion of basal-body rod; | chromosome | CDS | 1241094 | 756 | + | 0.60582 |
flgG | SC1126 | flagellar biosynthesis, cell-distal portion of basal-body rod | SubName: Full=Flagellar biosynthesis, cell-distal portion of basal-body rod; | chromosome | CDS | 1241863 | 783 | + | 0.564496 |
flgH | SC1127 | flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein | RecName: Full=Flagellar L-ring protein; AltName: Full=Basal body L-ring protein; Flags: Precursor; | chromosome | CDS | 1242691 | 708 | + | 0.542373 |
flgI | SC1128 | putative flagella basal body protein | RecName: Full=Flagellar P-ring protein; AltName: Full=Basal body P-ring protein; Flags: Precursor; | chromosome | CDS | 1243404 | 1104 | + | 0.578804 |
flgJ | SC1129 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 1244507 | 951 | + | 0.561514 |
flgK | SC1130 | flagellar biosynthesis, hook-filament junction protein 1 | SubName: Full=Flagellar biosynthesis, hook-filament junction protein 1; | chromosome | CDS | 1245522 | 1662 | + | 0.518652 |
flgL | SC1131 | flagellar biosynthesis; hook-filament junction protein | SubName: Full=Flagellar biosynthesis hook-filament junction protein; | chromosome | CDS | 1247198 | 954 | + | 0.536688 |
flgM | SC1119 | anti-FliA (anti-sigma) factor; also known as RflB protein | SubName: Full=Anti-FliA (Anti-sigma) factor also known as RflB protein; | chromosome | CDS | 1237100 | 294 | - | 0.517007 |
flgN | SC1118 | flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL | SubName: Full=Flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL; | chromosome | CDS | 1236673 | 423 | - | 0.539007 |
flhA | SC1920 | flagellar biosynthesis; possible export of flagellar proteins | SubName: Full=Flagellar biosynthesis possible export of flagellar proteins; | chromosome | CDS | 2030792 | 2079 | - | 0.562771 |
flhB | SC1921 | putative part of export apparatus for flagellar proteins | SubName: Full=Putative part of export apparatus for flagellar proteins; | chromosome | CDS | 2032863 | 1152 | - | 0.560764 |
fliC+F2048 | SC1962 | Flagellar synthesis: phase 2 flagellin (filament structural protein) | RecName: Full=Flagellin; AltName: Full=Phase 1-C flagellin; | chromosome | CDS | 2069412 | 1506 | - | 0.488048 |
fliD | SC1964 | flagellar biosynthesis; filament capping protein; enables filament assembly | SubName: Full=Flagellar biosynthesis filament capping protein enables filament assembly; | chromosome | CDS | 2071174 | 1404 | + | 0.494302 |
fliE | SC1972 | putative Flagellar hook-basal body protein | RecName: Full=Flagellar hook-basal body complex protein FliE; | chromosome | CDS | 2077769 | 315 | - | 0.546032 |
fliF | SC1974 | flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein | RecName: Full=Flagellar M-ring protein; | chromosome | CDS | 2078300 | 1683 | + | 0.571004 |
fliG | SC1975 | flagellar biosynthesis, component of motor switching and energizing | RecName: Full=Flagellar motor switch protein FliG; | chromosome | CDS | 2079975 | 996 | + | 0.547189 |
fliH | SC1976 | flagellar biosynthesis; possible export of flagellar proteins | SubName: Full=Flagellar biosynthesis possible export of flagellar proteins; | chromosome | CDS | 2080963 | 708 | + | 0.607345 |
fliI | SC1977 | flagellum-specific ATP synthase | SubName: Full=Flagellum-specific ATP synthase; | chromosome | CDS | 2081670 | 1371 | + | 0.596645 |
fliJ | SC1978 | flagellar fliJ protein | SubName: Full=Flagellar fliJ protein; | chromosome | CDS | 2083062 | 444 | + | 0.513514 |
fliK | SC1979 | flagellar hook-length control protein | SubName: Full=Flagellar hook-length control protein; | chromosome | CDS | 2083502 | 1218 | + | 0.615764 |
fliL | SC1980 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2084764 | 528 | + | 0.543561 |
fliM | SC1981 | flagellar biosynthesis, component of motor switch and energizing | RecName: Full=Flagellar motor switch protein FliM; | chromosome | CDS | 2085296 | 1005 | + | 0.533333 |
fliN | SC1982 | flagellar biosynthesis, component of motor switch and energizing | SubName: Full=Flagellar biosynthesis, component of motor switch and energizing; | chromosome | CDS | 2086297 | 414 | + | 0.543478 |
fliO | SC1983 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2086710 | 378 | + | 0.603175 |
fliP | SC1984 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2087087 | 738 | + | 0.536585 |
fliQ | SC1985 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2087834 | 270 | + | 0.518519 |
fliR | SC1986 | putative flagellar biosynthetic protein | RecName: Full=Flagellar biosynthetic protein fliR; | chromosome | CDS | 2088112 | 795 | + | 0.515723 |
fliS | SC1965 | flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity) | SubName: Full=Flagellar biosynthesis repressor of class 3a and 3b operons (RflA activity); | chromosome | CDS | 2072592 | 408 | + | 0.495098 |
hofB | SC0142 | putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptake | SubName: Full=Putative integral membrane protein involved in biogenesis of fimbriae (Type IV pilin), protein transport, DNA uptake; | chromosome | CDS | 162377 | 1386 | - | 0.553391 |
hofC | SC0141 | putative component in type IV pilin biogenesis | SubName: Full=Putative component in type IV pilin biogenesis; | chromosome | CDS | 161185 | 1203 | - | 0.540316 |
hopD | SC3376 | leader peptidase HopD | SubName: Full=Leader peptidase HopD; | chromosome | CDS | 3551227 | 594 | + | 0.521886 |
invC | SC2826 | surface presentation of antigens; secretory proteins | SubName: Full=Surface presentation of antigens secretory proteins; | chromosome | CDS | 2990205 | 1296 | - | 0.544753 |
invG | SC2830 | invasion protein; outer membrane | SubName: Full=Invasion protein outer membrane; | chromosome | CDS | 2995125 | 1689 | - | 0.462404 |
lpfA | SC3571 | long polar fimbria | SubName: Full=Long polar fimbria; | chromosome | CDS | 3778230 | 537 | - | 0.463687 |
lpfB | SC3570 | long polar fimbrial chaperone | SubName: Full=Long polar fimbrial chaperone; | chromosome | CDS | 3777447 | 699 | - | 0.449213 |
lpfE | SC3568 | long polar fimbrial minor protein | SubName: Full=Long polar fimbrial minor protein; | chromosome | CDS | 3773266 | 528 | - | 0.511364 |
mac | SC3079 | putative methyl-accepting chemotaxis protein | SubName: Full=Putative methyl-accepting chemotaxis protein; | chromosome | CDS | 3260089 | 1056 | - | 0.427083 |
mcp | SC1652 | putative methyl-accepting chemotaxis protein | SubName: Full=Putative methyl-accepting chemotaxis protein; | chromosome | CDS | 1764539 | 1077 | - | 0.47818 |
mcp1 | SC3094 | putative methyl-accepting chemotaxis protein | SubName: Full=Putative methyl-accepting chemotaxis protein; | chromosome | CDS | 3273782 | 1644 | - | 0.569343 |
mcp2 | SC3162 | putative methyl-accepting chemotaxis protein | SubName: Full=Putative methyl-accepting chemotaxis protein; | chromosome | CDS | 3342869 | 1566 | - | 0.506386 |
motA | SC1930 | proton conductor component of motor, torque generator | SubName: Full=Proton conductor component of motor, torque generator; | chromosome | CDS | 2042704 | 888 | - | 0.513514 |
motB | SC1929 | enables flagellar motor rotation, linking torque machinery to cell wall | SubName: Full=Enables flagellar motor rotation, linking torque machinery to cell wall; | chromosome | CDS | 2041778 | 930 | - | 0.545161 |
orgB | SC2801 | putative flagellar biosynthesis/type III secretory pathway protein | SubName: Full=Putative flagellar biosynthesis/type III secretory pathway protein; | chromosome | CDS | 2967315 | 681 | - | 0.449339 |
ppdA | SC2938 | prepilin peptidase dependent protein A, putative component in type IV pilin biogenesis | SubName: Full=Prepilin peptidase dependent protein A, putative component in type IV pilin biogenesis; | chromosome | CDS | 3117055 | 471 | - | 0.55414 |
ppdD | SC0143 | putative major component of type IV pilin, prelipin peptidase dependent protein | SubName: Full=Putative major component of type IV pilin, prelipin peptidase dependent protein; | chromosome | CDS | 163772 | 438 | - | 0.541096 |
safB | SC0293 | putative fimbriae assembly chaparone | SubName: Full=Putative fimbriae assembly chaparone; | chromosome | CDS | 337447 | 738 | + | 0.47832 |
safC | SC0294 | putative fimbriae usher | SubName: Full=Putative fimbriae usher; | chromosome | CDS | 338208 | 2511 | + | 0.543608 |
sipB | SC2817 | cell invasion protein | SubName: Full=Cell invasion protein; | chromosome | CDS | 2982642 | 1782 | - | 0.517957 |
spaO | SC2823 | surface presentation of antigens; secretory proteins | SubName: Full=Surface presentation of antigens secretory proteins; | chromosome | CDS | 2987863 | 912 | - | 0.529605 |
spaS | SC2819 | surface presentation of antigens; secretory proteins | SubName: Full=Surface presentation of antigens secretory proteins; | chromosome | CDS | 2985061 | 1071 | - | 0.434174 |
spy | SC1329 | periplasmic protein related to spheroblast formation | SubName: Full=Periplasmic protein related to spheroblast formation; | chromosome | CDS | 1427220 | 486 | + | 0.5 |
ssaC | SC1415 | Secretion system apparatus SsaC | SubName: Full=Secretion system apparatus SsaC; | chromosome | CDS | 1518145 | 1494 | + | 0.421687 |
ssaN | SC1436 | Secretion system apparatus SsaN | SubName: Full=Secretion system apparatus SsaN; | chromosome | CDS | 1533379 | 1302 | + | 0.510753 |
ssaQ | SC1439 | Secretion system apparatus SsaQ | SubName: Full=Secretion system apparatus SsaQ; | chromosome | CDS | 1535396 | 969 | + | 0.457172 |
sseB | SC1419 | Secretion system effector SseB | SubName: Full=Secretion system effector SseB; | chromosome | CDS | 1521622 | 591 | + | 0.434856 |
stbA | SC0383 | putative fimbriae; major subunit | SubName: Full=Putative fimbriae major subunit; | chromosome | CDS | 428942 | 537 | - | 0.47486 |
stbB | SC0382 | putative fimbriae; chaparone | SubName: Full=Putative fimbriae chaparone; | chromosome | CDS | 428119 | 762 | - | 0.454068 |
stbC | SC0381 | putative fimbriae; usher | SubName: Full=Putative fimbriae usher; | chromosome | CDS | 425574 | 2562 | - | 0.540593 |
stcB | SC2166 | putative periplasmic chaperone protein | SubName: Full=Putative periplasmic chaperone protein; | chromosome | CDS | 2268875 | 753 | - | 0.403718 |
stcC | SC2165 | paral putative outer membrane protein | SubName: Full=Paral putative outer membrane protein; | chromosome | CDS | 2266372 | 2490 | - | 0.457831 |
stdA | SC2969 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 3149971 | 711 | - | 0.488045 |
stdB | SC2968 | putative outer membrane usher protein | SubName: Full=Putative outer membrane usher protein; | chromosome | CDS | 3147362 | 2490 | - | 0.608032 |
stdC | SC2967 | putative fimbrial chaparone protein | SubName: Full=Putative fimbrial chaparone protein; | chromosome | CDS | 3146578 | 744 | - | 0.584677 |
steB | SC2890 | outer membrane usher protein | SubName: Full=Outer membrane usher protein; | chromosome | CDS | 3056123 | 2700 | + | 0.553704 |
stfA | SC0195 | putative fimbrial subunit | SubName: Full=Putative fimbrial subunit; | chromosome | CDS | 226764 | 561 | + | 0.515152 |
stfC | SC0196 | putative fimbrial outer membrane usher | SubName: Full=Putative fimbrial outer membrane usher; | chromosome | CDS | 227410 | 2658 | + | 0.55079 |
stfD | SC0197 | putative periplasmic fimbrial chaperone | SubName: Full=Putative periplasmic fimbrial chaperone; | chromosome | CDS | 230085 | 753 | + | 0.543161 |
stfD | SC2891 | putative periplasmic fimbrial chaperone | SubName: Full=Putative periplasmic fimbrial chaperone; | chromosome | CDS | 3058835 | 774 | + | 0.549096 |
sthA | SC4439 | putative fimbrial chaparone protein | SubName: Full=Putative fimbrial chaparone protein; | chromosome | CDS | 4750363 | 684 | - | 0.457602 |
sthB | SC4438 | putative fimbrial usher protein | SubName: Full=Putative fimbrial usher protein; | chromosome | CDS | 4747780 | 2538 | - | 0.469661 |
sthD | SC4437 | putative fimbrial subunit | SubName: Full=Putative fimbrial subunit; | chromosome | CDS | 4747205 | 558 | - | 0.501792 |
sthE | SC4436 | putative major fimbrial subunit | SubName: Full=Putative major fimbrial subunit; | chromosome | CDS | 4746079 | 1086 | - | 0.519337 |
stiA | SC0177 | putative fimbrial subunit | SubName: Full=Putative fimbrial subunit; | chromosome | CDS | 204490 | 540 | - | 0.524074 |
stiB | SC0176 | putative fimbrial chaparone | SubName: Full=Putative fimbrial chaparone; | chromosome | CDS | 203759 | 684 | - | 0.533626 |
stiC | SC0175 | putativie fimbrial usher | SubName: Full=Putativie fimbrial usher; | chromosome | CDS | 201189 | 2544 | - | 0.553852 |
tcp | SC3506 | methyl-accepting transmembrane citrate/phenol chemoreceptor | SubName: Full=Methyl-accepting transmembrane citrate/phenol chemoreceptor; | chromosome | CDS | 3698956 | 1644 | + | 0.556569 |
trg | SC1621 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor | SubName: Full=Methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor; | chromosome | CDS | 1729036 | 1626 | - | 0.539975 |
tsr | SC4385 | methyl-accepting chemotaxis protein I, serine sensor receptor | SubName: Full=Methyl-accepting chemotaxis protein I, serine sensor receptor; | chromosome | CDS | 4692472 | 1662 | + | 0.552347 |
virG | SC0308 | similar to Shigella VirG protein | SubName: Full=Similar to Shigella VirG protein; | chromosome | CDS | 354962 | 408 | - | 0.470588 |
vmtV | SC1226 | Gifsy-1 prophage VmtV | SubName: Full=Gifsy-1 prophage VmtV; | chromosome | CDS | 1335545 | 744 | + | 0.560484 |
vmtV | SC0991 | Gifsy-2 prophage VmtV | SubName: Full=Gifsy-2 prophage VmtV; | chromosome | CDS | 1104335 | 1530 | + | 0.533333 |
yfcP | SC2894 | fimbrial subunit | SubName: Full=Fimbrial subunit; | chromosome | CDS | 3060616 | 537 | + | 0.52514 |
yggR | SC3039 | putative protein transport | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3219437 | 981 | - | 0.571865 |
yifL | SC3845 | putative outer membrane lipoprotein | SubName: Full=Putative outer membrane lipoprotein; | chromosome | CDS | 4086260 | 204 | + | 0.534314 |
yrfC | SC3423 | putative inner membrane protein | SubName: Full=Putative inner membrane protein; | chromosome | CDS | 3598704 | 540 | - | 0.588889 |