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Gene list

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COG category: Cell wall/membrane biogenesis
Gene type: CDS
Genomic element: pSS_046

Number of genes found: 13

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# Shigella sonnei Ss046, Ss046

>SSO_P180 conserved hypothetical protein
MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIAFEASKL
GIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLF
TWKHPFRIIRQKTYLTRKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTR
VTVVPPGFDFQKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGH
EFMLNLLFHLKMNGRQFCWLIVGSGSPELREHLQYQIDSMGMHDDVFIAD
NVFPAAPVYRVASLVVLPSENESFGMVLAEASAFSVPVLASQIGGIPDVI
QNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQMARQAKQDIEERFDINK
TALKILTLAKHK
>SSO_P143 icsA/virG, IcsA/VirG
MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLLLGGPIA
FAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSH
ASRTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGM
ILGGNGGSGADHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNG
GDAVTGVNLPIINKGTISGGNGGNNYGEGDGGNGGDAITGSSLSVINKGT
FAGGNGGAAYGYGYDGYGGNAITGDNLSIINNGAILGGNGGHWGDAINGS
NMTIANSGYIISGKEDDGTQNVVGNAIHITGGNNSLILHEGSVITGDVQV
NNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVSGDVSFGEN
SSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKE
NAELTVSTILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNIN
AGILKMGTVEAMTRTAGVIVNKGATLNFSGMNQTVNTLLNSGTVLINNIN
APFLPDPVIVTGNMTLEKNGHVILNNSSSNVGQTYVQKGNWHGKGGILSL
GAVLGNDNSKTDRLEIAGHASGITYVAVTNEGGSGDKTLEGVQIISTDSS
DKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMDNQESKQMSNQ
ESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSPSL
YDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQI
GGDILKTNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGL
YSSWFQNEKERTGLYMDAWLQYGWFNNTVKGDGLTGEKYSSKGITGALEA
GYIYPTIRWTAHNNIDNALYLNPQVQITRHGVKANDYIEHNGTMVTSSGV
NNIQAKLGLRTSLISQSCIDKETLRKFEPFLEVNWKWSSKQYGVIMNGMS
NHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNSYRDTQGILGVKY
TF
>SSO_P241 icsP/sopA, IcsP/SopA
MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGKTKERVY
HPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKAS
MVDKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGL
IAGYQESRYSFNAMGGSYIYSENGGNRNKKGAHPSGERTIDYKQLFKIPY
IGLTANYRHENFEFGAELKYSGWVRSSDTDKHYQTETIFKDEIKNQNYCS
VAANIGYYVTPSAKFYIEGSRNYISNKKGDTSLYEQSTNISGTIKNSASI
EYIGFLTSAGIKYIF
>SSO_P097 ipgF, IpgF
MSRFVFILLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESGFNKFAV
NVNNNGSKDYGIMQINDFHSKRLREMGYSEEMLISHPCLSVHYAAKLLNE
FMMMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYRRYLRIAAESKQNNR
RI
>SSO_P182 msbB2, MsbB2
MKKYKSEFIPEFKKNYLSPVYWFTWFVLGMIAGISMFPPSFRDPVLAKIG
RWVGRLSRKARRRATINLSLCFPEKSDTEREIIVDNMFATALQSIVMMAE
LAIRGPEKFQKRVFWKGLEILEEIRHNNRNVIFLVPHGWSVDIPAMLLAA
QGEKMAAMFHQQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGY
WGYYLPDQDHGPEYSEFADFFATYKATLPIIGRLMNISQAMIIPLFPVYD
EKKHFLTIEVRPPMDACIASADNKMIARQMNKTVEILVGSHPEQYIWVLK
LLKTRKSNEADPYP
>SSO_P224 wbgT, putative UDP-glucose 6-dehydrogenase
MFYVHFMMDKKMKFDTLNAKIGIIGLGYVGLPLAVEFGKKVTTIGFDINK
SRIDELRNGHDSTLECSNLELLEATKLTYACSLDALKECNVFIVTVPTPI
DKHKQPDLTPLIKASETLGKIIKKGDVIIYESTVYPGATEEDCIPVVEKV
SGLKFNIDFFAGYSPERINPGDKEHRVTNILKVTSGSTPDVAEYVDQLYK
LIITVGTHKASSIKVAEAAKVIENTQRDVNIALINELSIIFNKLGIDTLE
VLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSVGYHPEMILAGRR
LNDSMGQYVVSQLVKKMLKQRIQVEGANVLVMGLTFKENCPDLRNTKVID
IISELKEYNINIDIIDPWCSTDEAQHEYGLTLCEDPKVNHYDAIIIAVAH
NEFREMGESAIRALGKDEHVLFDLKYVLDKKSIDMRL
>SSO_P225 wbgU, putative UDP-glucose 4-epimerase
MDIYMSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLD
NFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLH
QAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYG
DHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVF
GRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNI
LSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE
FRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLKG
>SSO_P230 wbgW, putative glycosyltransferase
MSDVLVSLIIVCFNAEKYIEKSLLAFINQDVGLDKFELIIVDGDSSDNTI
SIVQDVFSKHSNIKHKIINNKKRTLATGWNIGVLEANGKFVCRVDAHSDI
PNNYISKLLDDYFNIMQFDDSVVGVGGVLTNSYKTKFGSIVADFYASKFG
VGNSPFRCVDKNNRLKKTDTAVFALYNKDVFFDVGLFNEVLDRNQDIDFH
KRVLSNNLSLYTDNSLFVEYYVRDNFKDFIKKGFLDGFWVVMSGAYYFRH
IVPLFFVLYLIVSFSLFFATGDYIYLSFLFFYFLISILFSIRDGRSFIGR
VFLPFIFLSYHISYGCGSLLSFLKRYFK
>SSO_P231 wbgX, putative glycosyltransferase
MKNFIPFALPEIGEEEIAEVIDSLRSGWITTGPKAKQFEQEFSNYLGANV
QSLAVNSATSGLHLALEAVGVKPGDQVIVPSYTFTATAEIVRYLGADPVI
VDVDRKTFNISVDAIEKAITNETKAIIPVHFAGLACDMDSILSIAKKYDL
KVVEDAAHAFPTTYKGSKIGTLDSDATVFSFYANKTMTTGEGGMVVSKNK
DIIERCKVMRLHGISRDAFDRYQSKTPSWFYEVVAPGFKYNMPDICAAIG
IHQLRKIDDFQKKRQRMAKIYDDALKELPLELPEWPTNASDIHAWHLYPI
RLKTDSAINRDDFIKKLSDLGIGCSVHFIPLHKQPVWRDTYNLNASDFPV
SEECYLNEISIPLYTKMTDQDQLFVIKSIRQLFM
>SSO_P232 wbgY, putative glycosyltransferase
MKRIFDVIVAGLGLLFLFPVFIIVSMLIVADSKGGVFFRQYRVGRFGKDF
RIHKFRTMFIDSEKKGRITVGQDARVTRVGWYLRKYKIDELPQLIDVLSG
TMSLVGPRPEVREFIDEYPDDIREKVLSVRPGITDLASIEMVDENEILSS
YDDPRRAYIDIILPIKQRYYLDYVANNSVKYDCVIIWKTIIKILSR
>SSO_P233 wbgZ, putative epimerase/dehydratase
MIDRILELPRIVKRGIIICIDVVMVIFSFWLSYWLRLDEQTAFLSAPMWF
AAAILTIFTVFIFIRIGLYRAVLRYVSAKIMLLIPVGILASTLSLVVISY
SLSIMLPRTVVGIYFLVLLLLTSGSRLLFRMILNYGVKGSAPVLIYGAGE
SGRQLLPALMQAKEYFPVAFVDDNPRLHKAVIHGVTVYPSDKLSYLVDRY
GIKKILLAMPSVSKSQRQKVITRLEHLPCEVLSIPGMVDLVEGRAQISNL
KKVSIDDLLGRDPVAPDAKLMAENITGKAVMVTGAGGSIGSELCRQIVRY
KPAKLVLFELSEYALYAIEKELSALCDKEVLNVPVIPLLGSVQRQNRLQM
VMKSFGIQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYCAESAIESGVE
TFVLISTDKAVRPTNTMGTTKRLAELVLQALSARQSQTRFCMVRFGNVLG
SSGSVVPLFEKQIAQGGPVTLTHRDIIRYFMTIPEASQLVIQAGAMGHGG
DVFVLDMGDPVKIYDLAKRMIRLSGLSVRDDKNPDGDIAIEVTGLRPGEK
LYEELLIGDSVQGTSHPRIMTANEVMLPWQDLSLLLKELDQACHDFDHER
IRSLLLQAPAAFNPTDDICDLVWQQKKSLLSQASNVIRL
>SSO_P227 wzy, putative polysaccharide polymerase
MLIYLYPVLLLFNILPVFFYGQMNSDLERFFGVPIGYIPDLIFYFFVVLT
SIITLRFHVSLWTKKLLFLGIIFLIYISIQMLLLSADISGVVILLSFFSN
FIALVLLVSFCIGKDELYLTHSVRNINVVMCFGIICGVVKLFIGYSEDSN
FIVYLNRNATAIIVVCFYCVYSYFYRGRKSWYVSSVLYSLFFLFLDSRAG
IISFAISLFFVFLQLTKKEKLLISLFFVPLLTLGISFTDIGTRLERMLSS
SQVIFSGGNTLTKSQNDYRRVELVFIGVDVLKENYLIGTGLGVANYVKAI
DKKFLGSTNFGLAHNFYLSYSAQLGIIGFILLISVFYIMLSPIFKCGGYI
GKGCVFALAFYVFFNEYILTPAIYIYISIFLSVVFIRNSK
>SSO_P223 wzz, O antigen chain length determinant protein
MPKAEDEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKT
YIQAPRIAELGSYLKFHQAYARILNQPLDTNALANGLFSDLILIAESPDT
KVKFLESTEYYKKETNNLSTEQDKKIWLAEQANKGLVITPPKEKGNTSYY
IIQASADSAQEAYKLLQGYLKNVNNQAVTLSLDEFGQNVNTLLVNLNKEI
IDIDFQRKSEKLDQIAHIQRDLTTAEQAGIIDYRSSKGGFDNAQSSYKFL
LGEKLLSAELKATKDAPIIYPFRYYEVKRQIDELEGMLRDNIQAQAYRYQ
MKPSEPVIKDKPNKALILILGALPGAMFAIVGTLVYATLKDKTKLD