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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pHCG3

Number of genes found: 7

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# Oligotropha carboxidovorans, OM5 = DSM 1227

>gid:1151302    nuclease
MARSEQTLAANFVICGEGPRIDCVVDGDTFWYRGDKIRIADIDAPELSPP
RCQREAELGEAAKRRLRVLLNAGPFTLAAVERDQDRYGRKLRTVSRGGRS
LGDMLIAEGLARRWGGPRQSWCGG
>gid:1151288    putative methylase protein
MEDAVGEADYASLARCTQYAHFTPEFIVQAIWSGLQRLGWRGGRILEPGI
GTGLFPALMPDGLRDVSRVTGIELDPVTARIARLLQPRARIIAGDFVRTE
LPASFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYFIARAIDLLKPGALA
AFVTSAGTMDKADSTMRECIAKSADLIAAIRLPEGSFRASAGTEVVVDVL
FFRKHKIGDAEGDLSWLDLDEVRPATDDEGAIRVNRWFVKHPDLVLGAHA
LASGPFGETYTCLPREGEDLAAAISTAIQFLPEAIYDGEPEVIDLDLEAL
DDPSLDDLPSDRHVREGSYFFDKARGLMQILDGEPVAVKMRKGRSGDGVP
DKHIRIIRKLIPIRDAVREVLKTQELDRPWKDAQVKLRIAWSNFVRDFGP
INFTTVSLTEDEETGEVRETHRRPNIQPFLDDPDCWLVASIEDYDLETNT
AKPGPIFTERVISPPAAPVITSAADALAVVLNERGRVDVDHIAELLHRDR
DDVVAELGSAIFCDPADGSWQTADAYLSGPVRDRLKAAKAAAALDPVYER
NVAALQGVQPADLRPSDITARLGAPWIPAADIIAFVKETMDAEIKIHHMP
ELASWTVEARQLGWMAAGTSEWGTDRRHAGELLSDALNSRVPQIFDTIKD
GDSERRVLNVIDTEAAKTKLQKIKDAFQRWIWSDADRTDRLARLYNDRFN
NIAPRAFDGSHLKLPGASGAFVLYGHQKRGIWRVISSGSTYLAHAVGAGK
TMTMAAAVMEQRRLGLIAKAILVVPGHCLAQAAREFLALYPNARILVADE
TNFTKDKRHRFLSRAATATWDAIIITHSAFRFISVPSAFEQQMIQDELEL
YETLLTKVESDDRVSRKRLERLKEGLQERLESLSTRKDDLLTISEIGVDQ
IIVDEAQEFRKLSFATNMSTLKGVDPNGSQRAWDLYVKSRFVETKNPGRA
LVLASGTPITNTLGEMFSVQRYLGFAALLERGLHEFDAWASTFGDVSTEL
ELQPSGKYKPVTRFATFVNVPELIAMFRSFADVVMPEDLRQYVKVPAIST
GRRQILTAKPTAAFKRYQVLLDARIKAIEERDRPPEPGDDILLSVITDGR
HAAIDLRLVDSDNDNEPENKLNKLIANAFRIWRETAKNTYVRPDGKPFEL
PGAAQMIFSDLGTINVEKTRGFSAYRWIRDELIRMGVPPSEIAFIQDFKK
TEAKQRLFGDVRAGKVRFLLGSSDTMGTGVNAQLRLRALHHLDVPWLPSQ
IEQREGRIVRQGNQNDEVDIYAYATEGSLDAQMWQNNERKARFIAAALSG
DTSIRRLEDLGESQANQFAMAKAIASGDERLMRKAGLEADIARLDRLRAA
HIDDQHAVRRQVRDAERDIEFATRRIAEIGQDIARLVPTGGEAFAMRVKE
RRYSERKEAGRALMKELLTLVQLQHEGASVIASIGGFDVEYVGERIGRDG
YCYTTRLMRTGTNDEIDLPVTVTPLGAISRLEHAVGDFEAEQEHFRQGLI
DARRRLAAYQSREGGDFAFAAELADKRQQLCAIEAELANDSESPANRIAA
>gid:1151291    transposase ISC1190
MEATRNWMVMYDWLDDICDDVVLAHPLKVKAIADAKIKTDKIDATVLAHL
LRADLVPQAWAPGEKARELRIALRERMFYVRLRTMVKNRIVTVFDRYPEQ
TAQLKKLGDLFGKAGRQQFAALHVSDIDRIQIDRGLDFIGDIDVRIKQSE
ATIRAMTKTNSNVKLLKTIPGIGEFFARLIDAEIDDIRRFRTSKKLAAYA
GLVPSTYSSGGKTYHGGIIKQGNKWLRWAFVEAVAPAVATDPQLRAQYEH
LKFRGANKARVAIARKLLTIAFQILRDQRPYERRGLNSEEGASSTTSRLS
>gid:1151281    transposase B
MTADIIELARQYGRYGYRRITALLRRAGWTVNKKRVERIWRCEGLKVPAK
QPKRGRLWLNDGSCIRLRPERPNHVWSYDFVADRTHDGKAFRMLCIIDEF
SRESLAIRVARKLKATDVIEALCELFVSRGIPAHIRSDNGPEFVAQALRD
WIVAVGAKTAYIEPGSPWENGYCESFNGKLRDELLNGEIFYTLKEAQIVI
ENWRRHYNTVRPHSSLGYQPPAPEALVWPAPKEIGKMQSLN
>gid:1151218  dnaA3  DNA-polymerase III-alpha chain
MSGQRYAELQVTSQFSFLRGASSCEELFAQAALLGIEALAVADRNSLAGV
VRAHEAANATGVRLIRRLSPRSHGRLFDPGLSNRSRRLCAAVPAALARQE
TRWQGEMPSYMG
>gid:1151298  dnaB  replicative DNA helicase (DnaB)
MRLISRGAILVPVRRDSDGSLLSFRIPAERGPSQMNQAAHRFELAATPSI
PTLPHNIEAEQALLGAILINNAALFRVSDFLRSDHFFEPLHGTIFDIMSG
LVSANKVASPIIVKTFLPGGLNVAGLSASQYLARLAAEATTAINAVDYGR
TIYDLAIRRELINIAEDLRSAAFDAAVDSAPTDQIELAEQRLYEVAETGR
FGGGFESFDTALDHAIERAAQAYQSDGQLSGLPTGLKDLDAKMGGLQPSD
LIIIAGRPGMGKTSLATDVAFNVARAYEPPTDTSGKAAAGGIVAFFSMEM
SSEQLATRVISEQAEVSSSRIRRGAIDEGDFERLVERRRNMRQLPLYVDQ
TGALTVSQLAARARRLKRQRGLDLVVVDYIQLMQGRSQRAAQNRVQEVTE
ITTGLKALAKELNVPIIALSQLSRLVENRDEKRPQLSDLRESGSIEQDAD
VVLFVFREEYYLKNKEPRAGTEDHVKWEAELDAARGKAEIIISKQRHGPT
GTVLLSFQGEFTRFADLADERG
>gid:1151307  traA  TraA
MPPFPPDVLCRHSYRTAALAITHFTPQIISRADGRSAVLAAAYRHCAKMT
YEAEARVVDYTGKRNMVHDEFVLPPDAPQWACAMMATRSAAEVSAAFWNK
LEAFEKRSDAQLSKEYIIALPIELTTAQNVALMRQFVAEHILSKGQVADW
VYHDDPGNPHVHLMTSLRPLTEDGFGPKRVHVVGEDGATLRGRTGKIVYK
LWAGDKNDFLSVRQGWIDLQNHHLALAGLDVRVDGRSYAERGIDVVPTTH
IGVAAKAIERRARRQGRGPDLDRLRLFEDQRQVSAERIMRRPEIVLDIVS
REKSVFDERDVAKVLHRYVDDAGTFAMLLARILQSPDAIRLEREGIDFAN
GARRPARYTTRELIRVEADMAKRAVSLSGSSSFGVSDKIRNAVLSRHAMI
SGEQRSAIEHITAAGSAAAVVGRAGAGKTTMMRAAREVWEAAGYRVVGGT
LAGKAAEGLEKEAGIASRTLASWELAWSKGRSVLDNRTVFVLDEAGMVAS
RQMATFVEAVSRAGAKLVLVGDPEQLQPIEAGAAFRALVDRIGYAELETI
YRQKAQWMRDASLDLARGRVGKALAAYRHYGRVMGSELKAQAVTSLIDDW
SRDYDPKKSTLILAHLRRDVRALNEMARASLVSRGLVDAGHAFRTEDGER
RFAAGDQIVFLRNEGSLGVKNGMIGHVVEAAQGRFTAEIGEGVHRRRVEV
DQRFYRNVDHGYATTIHKAQGATVDRVKVLASLSLDKHLTYVALTRHRED
VALYYGRRSFGKAGGLVPLLSQRNAKETTLDYERGGLYRDALRFAANRGL
HVMRAARTLISDRLDWARRQRQRFDELAARLRAVGAHLGLLDRHHTAPLS
RKKEIAPMVPGVTTWPKSIAESVEDKIVADPACRKQWQDMSARFALVFSN
PEVAFKAMNFDAVLHNPAMRKATLNRLAKEPESFGDLRGAKGILTGQAAA
RERHEAETNVAALSRDIERYARLRNEATRKHDAEERALRLRVTIDVPALS
PAATLVLERIRDAIDRNDIPNALAFALSDKMVSAEIEGFNKAVAERFGEG
AFLHNRAKEPKGAAFDVAAARLRENEKPALAAAWPLMRAGQHLAAHQKQS
AEAAKRVESQRQVQSRGMAMK