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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome 2

Number of genes found: 34

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# Photobacterium profundum, ss9

>PBPRB0293 hypothetical protein
MKITRNETQWQTLIQNQQTSGLTISNYCQQHQLPTSSFYAFKKKLGLTSN
SFVRAKVIQQIELLEEQPSITLTVGKANVSLPATTSATYLAQILRELS
>PBPRB0188 hypothetical Y4jO
MLNLCRYLCVEPFVSMKINLPDIPESEQTPLVKGLIGIIEQLSDTVERQQ
EEITLLKDEINVLKGQKKRPKFKPSKLDTNTDEKSDQGSTDNKRSGSTKR
SKNQTLTIHQDNIVQPEQPLPIGARFKGYRDFVVQELEIQSCNVRYRLAC
YLLPDGSTVTATLPNGLAGQHFGTRLRSYILYQYHQCQVTQPLLLEQLRE
WGIDISSGQLNRLLTENHDDLHEEKAELLAAGLQSTGYITTDDTGARHQG
KNGFVTHIGNEWFAWFQSSDRKNRINFLSLLRAGNKGYQVNTCALNYMAT
NKLPAPPVSIVSNTPVTNFGCEEEWSAHLVQLGIVVKRHIQIATEGALLG
CASENEALGKLAVISDGAGQFKVLQHGLCWVHAERLVHKLIPLNEGHRED
IAQVRDEIWSFYKELKEYKKQPCDTKKSALSKEFDRLFTQKTRYELLNQQ
LKRLNKLKSSLLLVLERPEIPIHTNGSENDLREQVKRRKVSGGTRSDLGR
QCRDTFSSLKKTCGKLGVSFWKYLNDRISQSNVIPSLGSLVLQKAHPASA
Y
>PBPRB0195 hypothetical protein
MKITRNETQWQTLIQNQQTSGLTISNYCQQHQLPTSSFYAFKKKLGLTSN
SFVRAKVIQQIEFLEEQPSITLTVGKANVSLPATTSATYLAQILRELS
>PBPRB0016 BLL7554, Putative transposase
MEYGITIPTGAAKVKQICRQHEDCRRIMNIPGVGELTATALISAVPNPDV
FKNGRHMSAWLGLVPRQHSSGDKQILLGISKRGDRYLRTLLIHGARSALS
KCKNLDNEYGRWLTEKKCTLNFNKAAVALANKNARIIWSILSTGKEFDFN
NQKVAA
>PBPRB0299 BLR1839, hypothetical protein
MQRLKCFGLKVHPKKTKLIRFGRFASQQCAERGSLGKPETFDFLGFTHYF
GRKLSGEVILKRKTMHKRQVSHLKRIKLELHKRLHDKPWETGRWLRRVVQ
GHINYYGVPFNSYRIDQFVKEIKRLWLKSLRRRSQRHRMTWERFKYYIEY
WLPKPKIVHPYPEQRFYAKHPR
>PBPRB0015 BR1855, putative transposase
MQNFFLRSDRMTIKFTGRHFPSEIILQSVRYYLSYKLSYREIEEVLAERG
INVDHSTLNRWVIKYAPLLEHRARGRKKPVASSWRMDETYINVKGQWKYY
YRAVDKYGDVIDFLLRDKQDEKAARAFFQKAIGQHGLPDKVVIDGSHSNA
LTLHHINVDLWHNGHMLSLIEILSIKYLNNIVEQSHRRVKGKMNQCLGWK
SDEGAKATLAGIELWSMIKNGQLDNPDGLSVWDEFYALAA
>PBPRB0212 CV2853, putative ATP-dependent RNA helicase DbpA
MSQTAFSTLNLHADLLKNLTSLGYESMTPIQALSLPHILAGEDVIAQGKT
GSGKTAAFGLGLLEKLNVKRFRVQSLVLCPTRELADQVAKEIRKLARTIH
NIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRIEEHVRKGTLNLDDLEI
LILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSATYPPQIKSVADRIM
HKPVMAKVESTHDESTIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFC
NTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVAT
DVAARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDK
EHYKVAMLEDYLDRAISGEPLPSMDLLDQPTFRPAMTTLQIDGGKRQKIR
PGDILGALTGESGIAGAQVGKIQIFDNFAYVAVKSESVRAAMKKLEDGKL
KGRSFRVRQIRG
>PBPRB0210 DAT, hypothetical methylated DNA-protein cysteinemethyltransferase
MFNQLIHTPIGWLNIKASDKGVVAIEFNADQAASQKMNTVTQQCFEQLSE
YFTGVRKVFSVSLDMQGTDFQQQVWRALEQVEFGQTCSYTDIAVGVSSPK
AVRAVGAANGRNPVPIIVPCHRVIGRSGKLTGYAGGIDTKAWLLTHEGTN
FLSK
>PBPRB0298 ID266, hypothetical protein
MKFKKIPSLKTGDLCIRDRVNWVLDLDISKFFDTVEHDWLIKLIEHRIGD
KRVIRLIKQWVKVGVVDENGHRQASTIGTPQGSVISPLLANIYLHYSFDL
WLN
>PBPRB0023 IS22-1, hypothetical transposase
MPSSLCPCCGDSHIAINQKPSYRHQVHEIPEPIVNITEYQVFHGRCQNCQ
TSVKGKRPQDTPQGIMGPNLMSYIALLAGQFHLSVRKIQELLKLQLGTSF
STGAISEAQGKVSSMLTPLHQAVRDAIQKAPMVHIDETSHIRNGESSLRW
CWLMSSDDWVYERVLFSRSTHSAKVMLNEKFAGVVISDQCASYNWLNPEK
HQFCLGHLKRNLQQMADYSGGGLTAFIGKRLTLLINMIFRTQHCYEEENI
SAEIYFRRMKRLRKSLTRWLHKGADVTTSRYSGRCKFILKHEVSLWVFLT
APLTIPLTNNEAERRLRGSVIMRKISFGTSSDRGDKFRGRIHTLVETCKK
RSMSPFIALQQIVNAVVKKQPYPDIFNLCSG
>PBPRB0232 IS22-1, hypothetical transposase
MPSSLCPCCGDSHIAINQKPSYRHQVHEIPEPIVNITEYQVFHGRCQNCQ
TSVKGKRPQDTPQGIMGPNLMSYIALLAGQFHLSVRKIQELLKLQLGTSF
STGAISEAQGKVSSMLTPLHQAVRDAIQKAPMVHIDETSHIRNGESSLRW
CWLMSSDDWVYERVLFSRSTHSAKVMLNEKFAGVVISDQCASYNWLNPEK
HQFCLGHLKRNLQQMADYSGGGLTAFIGKRLTLLINMIFRTQHCYEEENI
SAEIYFRRMKRLRKSLTRWLHKGADVTTSRYSGRCKFILKHEVSLWVFLT
APLTIPLTNNEAERRLRGSVIMRKISFGTSSDRGDKFRGRIHTLVETCKK
RSMSPFIALQQIVNAVVKKQPYPDIFNLCSG
>PBPRB0289 MT3534, hypothetical transposase
MINEAQAAGARQSQACKIIGLNSKTIQRWKCNDNTHDKRLNAQKAPKNKL
TDLERQRIINVANYAAYTNLPQNQIVPILADKGIYLGSESTFYRILKAHK
LLNHRQRSKPCQKVKKPKALVATGPNQIYTWDITYLPTTVKGLFFYLYMV
MDVFSRKVVGWQVHDNESSALAADLMTDICKREDIKRGQVVLHSDNGSPM
KGATMLATLQELGVMPSLSRPSVSNDNPYSESLFRTLKYRPEYPEKAFEN
IASSRRWVSDFVCWYNNEHRHSGIKFVTPAQRHTGRDIEILAQRTRLYHA
AKARHPERWSGNIKNLEPVGSVYLNPEKGKANSKEVEAA
>PBPRB0073 NE0134, hypothetical protein
MRAKTFTYRLKYITQLLLDMTPAQREQVKLNIQSIQPEITVGDIIQPIFD
ISPQCPHCHSLHFNKWGKSGSVQRYRCKECAKTFNIKTKTPLAKLHKCDL
WLQYAECMELKLPLRQAAKICNINLKTAFLWRHRFLEAQSEQYKDKLSGI
IEVDEFFLAYSEKGTKKLNGDRVARKRGGEVDKRKRGEQVAVLLSIDRSK
HMIDGVLADDTASEISSHLEPYIVKDSILCSDGAWAYVSIAEETNCDHKR
LISNENRVQDKIYHIQTVNGAVAHFKGWIDIKMRGVATKYLPHYLAWFRE
SYAGLNFQQMLVAAYR
>PBPRB0295 PP3985, hypothetical transposase
MNVLPDDPEQLKKMLLELQLLVAQKECELAEKDAIYQELLERYNIKLANE
YGKKSEKMPGADEVFNEAEVTLDEQDELLLASLSTEEKTEQKVKPKRKPL
PPELPRKDVIIDIEDTDKTCDCCRNPLHKMGESSSETLEFVPAHIKVIKT
IRPKYTCRHCENNGIESHIKMAPMPATPIPKSIATASLLSQIITCKYQFG
LPLYRQETMLSDIGIELSRQTMSSWILRCATLLEPLYMRLKTILLAEPAI
HADETPLKVIQAEKATSYMWVYCCGADALGSNTNIVLFDYHNSRRAQCAI
DFLDGYQGYMHVDGYKAYESTQATLVACLAHIRRKFIDVKKLQGKKKTGK
VDIVLNLIGKLYGIEKRIKGKSVEEKLAIRQSQAKPIVTTLYNWLIEHKE
KIPPKSKLGEAISYSLNQFEKFQRYLEDGRLSIDNNRAERAVKPFVIGRK
AWLFSYTNTGANASAILYSLVETAKANNLLVHDYIATCLQQIAEKPNNID
ALLPWNIKHS
>PBPRB0185 PP3985, hypothetical transposase
MSDIGIELSRQTMSSWILRCATLLEPLYMRLKAILLAEPAIHADETPLKV
IKAEKATSYMWVYCCGADALGSNTNIVLFDYHNSRKAQCAIDFLDGYQGY
MHVDGYKAYESTQATLVACLAHIRRKFIDVKKLQGKKKTGKVDIVLNLIG
KLYGIEKRIKGKSVEEKLAIRQSQAKPIVTTLYNWLIEHKEKIPPKSKLG
EAISYSLNQFEKFQRYLEDGRLSIDNNRAERAVKPFVIGRKAWLFSYTNT
GANASAILYSLVETAKANNLLVHDYIATCLQQIAEKPNNIDALLPWNIKH
S
>PBPRB0192 PP3985, hypothetical protein
MAPMPATPIPKSIATASLLSQIITCKYQFGLPLYRQETMLSDIGIELSRQ
TMSSWILRCATLLEPLYMRLKAILLAEPAIHADETPLKVIKAEKATSYMW
VYCCGADALGSNTNIVLFDYHNSRRAQCAIDFLDGYQGYMHVDGYKAYES
TQATLVACLAHIRRKFIDVKKLQGKKKTGKVDIVLNLIGKLYGIEKRIKG
KSVEEKLAIRQSQAKPIVTTLYNWLIEHKEKIPPKSKLGEAISYSLNQFE
KFQRYLEDGRLSIDNNRAERAVKPFVIGRKAWLFSYTNTGANASAILYSL
VETAKANNLLVHDYIATCLQQIAEKPNNIDALLPWNIKHS
>PBPRB0301 PP4025, hypothetical protein
MVTTSGRKVRGKRKPLPKDLPRERIVLDLTDEEKVCACCQGELHKTGEDV
SEKLEFIPAVLKVLEYVRPKYGCRQCEQHAQSVAIKQQPVPTALIPKSYT
TESLLANIILSKYQYALPLYRQETLFSQAGIDLPITTMARWVMQVSECFT
PLYQRLKETLLNQTVVQADETPLNVLKENKQCYMWVYCSGADSPKASLEG
>PBPRB0187 PP4746, putative transposase
MQSFIEPSAVFIHRDFVDFRKSINGLAAIVEDELNRDAYTGELFVFCNKA
KDKLKILYWDKTGFALWYKRLEKQKFKWPSNIDCNEFELTDEQFKWLLSG
FDVLGHQELHYQSMI
>PBPRB0194 PP4746, hypothetical ISPpu15, transposase
MQSFIEPSAVFIHRDFVDFRKSINGLAAIVEDELNRDAYTGELFVFCNKA
KDKLKILYWDKTGFALWYKRLEKQKFKWPSNIDCNEFELTDEQFKWLLSG
FDVLGHQELHYQSMI
>PBPRB0294 PP4746, hypothetical ISPpu15, transposase
MQSFIEPSAVFIHRDFVDFRKSINGLAAIVEDELNRDAYTGELFVFCNKA
KDKLKILYWDKTGFALWYKRLEKQKFKWPSNIDCNEFELTDEQFKWLLSG
FDVLGHQELHYQSMI
>PBPRB0186 PSPTO554, hypothetical protein
MKLDVNLLPDDPEQLKKMLLELQLLVAQKECELAEKDAIYQELLERYNIK
LANEYGKKSEKMPGADEVFNEAEVTLDEQDELLLASLSTEEKTEQKVKPK
RKPLPPELPRKDVIIDIEDTDKTCDCCRNSLHKMGESSSETLEFVPAHIK
VIKTIRPKYTCRHCENNGIENHIKMAPMHANPEKYCYREFAEPNNHL
>PBPRB0300 PSPTO554, hypothetical transposase
MKNIVLFDYQNSRARACPEAFLGKYNGYLQTDGYKAYDGLAYVENLGCMA
HARRKFMDAKKLQGKGKTGKADVMLAKIQKLYALESRIKSFTAAERLVER
QEHAIPLLDDLSQWLSKQKVVSSSQLGKAIKYTVGQWPKLIRYVGRGRNG
HC
>PBPRB0225 RB787, hypothetical protein
MTLFEQHQLPCILESRLSKRYQTLIMEHMTVNSSNAPGVKSLRHHTQSWA
STQATWRFYHNEDVTFPMLSGPMLGLARSGVKESQSRYVLMAYDWCHINF
AKHHSKLDKTKMSHALDVGYELQASLLVDANTGAPIAPAGLNLLTSNGIY
QCRSQELQPKQSHLDSLFDSIHWQEQLHLDKPLVHVVDREADSAKDLRRL
GSVHWLTRTKKGSTFRHEGQFKTAEIISRTISPDLKGVISLRGKEGYLFV
GETTVELHRKSEKLASAAPTCRFVMSLVTDDEGKELARWYLLSNVLDVDA
TEIATWYCHRWNIESWFKLLKSDGHQLEKWQQTTAESILKRLITASVATT
LIFKLYSDSLDEANEFKGFLVKLSGRLTKRTKPVTQPSLLAGLWVFLQMC
EVLDTYTMDEINAMRQIASSFFAQSV
>PBPRB0189 RB787, hypothetical transposase
MTMTLFEQHQLPCILESRLSKRYQTLIMEHMTVNSSNAPGVKSLRHHTQS
WASTQATWRFYHNEDVTFPMLSGPMLGLARSGVKESQSRYVLMAHDWCHI
NFAKHHSKLDKTKMSHALDVGYELQASLLVDANTGAPIAPAGLNLLTSNG
IYQCRSQELQPKQSHLDSLFDSIHWQEQLDLDKPLVHVVDREADSAKDLR
RLGSVHWLTRTKKGSTFRHEGQFKTAEIISRTISPDLKGVISLRGKEGYL
FVGETTVELHRKSEKLASAAPTCRFVMSLVTDDEGKELARWYLLSNVLDV
DATEIATWYCHRWNIESWFKLLKSDGHQLEKWQQTTAESILKRLITASVA
TTLIFKLYSDSSDEANEFKGFLVKLSGRLTKRTKPVTQPSLLAGLWVFLQ
MCEVLDTYTMDEINAMRQIASSFFAQSV
>PBPRB0209 SCO6461, hypothetical ada regulatory protein
MIADNVPLNKPALSDEQCREARLSRDVRYDGLFFIAVKTTGIYCRSICPA
RAPLEKNVEYFQSAVIAANAGYRPCLRCRPDSAPGSPAWQGKNTTLHRAI
HLIDDGALQQQSLAELAERLGISDRYLRMLFQQELGLSPIAYSHYQQCLF
AKKLLHDTQLNITSIALASGFNSVRRFNDCFKKLFSLTPTQVRKNAIENK
HAQAEDIVITLSYRPPYNWRHLQQFYAARIIEGLEWCDENSYGRTFSYDS
VDGFHSVQGTGERISHSETPFDCIGEFTAFHIPEESVFSVRIQLSDLRYL
NRVIRNIRRCLDLDADIEHIEARLKRALNTEVLAISGLRLPGVWSPFEAG
IRAILGQQVSVQAAKNLVTKVVGNNPINIDDRCYFPLPQQLIGDELSYLK
MPGKRKETIRLFADYACDKPLDDSKALLAIAGIGPWTVHYLRMRGLSDPN
IFLIGDLGIKKALVKMNEAFSPDAAAPWRSYLTFYLWSADLDSATVPIVN
NSVITENGHV
>PBPRB0199 SF0747, putative ATP-dependent RNA helicase
MIDITNLTGHKYAKIARYYLSSEPFILMTTATTPANFTELGLISPLLARL
TELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPMLQHLFLQ
QHLSSKSSKGNYVTRLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFG
GVSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRM
LSLGFTDELSALLGLLPKNKQTLLFSATFPEQVQTLTQELLNDPVEIQLQ
SADASTLVQRVFTVNKGEKTALLAHLIKQNEWRQALIFVNAKNSCEHLAD
KLSKRGITAEVFHGDKGQGARTRVLDAFKAGEIEVLIATDIAARGLDIEK
LPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVIEKK
NKIRLEREQVEGFEADEVNEAFLIANKPMAKPEGSGKKKRKNKASLNEDI
WLDNF
>PBPRB0084 SO2276, putative transposase
MKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQ
FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI
MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF
KDYDEILDKVCSAWNSFLSDTKRVTRMCARSWISLTS
>PBPRB0085 SO2874, putative transposase
MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTS
VNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGG
RLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQ
DDFKKI
>PBPRB0288 TNP, putative IS1328 transposase
MFIQVLGIDLGKSCFHIVARDAAGKTQFKKKLSRTKLCEFLANHPQCTVA
FEACGGSHWLARKCMAFDHQPKLIPPQFVKAYLKGNKNDFNDAEAIAETA
TRPNMHFVPVKSENAQVIAAIHRFRSGYIKERTACMSRIGAVLLEFGMSL
PQGHATMKRLFQWLAKQSEPLHPMLPPVSDYLSLLIFIRGIKNECKIHRS
I
>PBPRB0013 TNPA, putative transposase
MSYANLSDMLAERGISVNRSTIYRWFIEYAPTLRKKLRRHQFIRTDSSWQ
LDETYVKVKGKWHYLYRAINKQGETLDFYFSHKRNKKAAYQFLRRCLRYY
DVDNQPKTLNTDKHSSYANAIARLKMEGRLRVDVEQRQVKCLNNGIESEH
APIKKLVVATGGFKIQKRAWSTIQGFESLRMLNKGQFDFWLRHDERKILV
RERSAFMNRLFNVEVIYS
>PBPRB0290 VC0870, hypothetical transposase
MKDHVHMCLSIPPKLSVSHVVGYMKGKSAISIARNFKGKQRNFTGEAFWA
RGYFVSTVGLDEEMVRAYIRNQEEQDCHRDQLKFGV
>PBPRB0005 VCA0202, hypothetical transposase
MIMDYRYGSHTVFKIQYHFVFVTKYRYQVLTGDVGLKARELIRQTCHAFE
IDILKGVISKDHVHLLVSAPPNMAPSEIMRRIKGRTSAKLFESYPDLKKK
YWGRHFWARGYFCVTSGDLTEEMIKEYLDHHFEPKAEDNFRTEG
>PBPRB0096 VCA0202, hypothetical transposase
MIMDYRYGSHTVFKIQYHFVFVTKYRYQVLTGDVGLKARELIRQTCHAFE
IDILKGVISKDHVHLLVSAPPNMAPSEIMRRIKGRTSAKLFESYPDLKKK
YWGRHFWARGYFCVTSGDLTEEMIKEYLDHHFEPKAEDNFRTEG
>PBPRB0165 VCA0202, hypothetical transposase
MIMDYRYGSHTVFKIQYHFVFVTKYRYQVLTGDVGLKARELIRQTCHAFE
IDILKGVISKDHVHLLVSAPPNMAPSEIMRRIKGRTSAKLFESYPDLKKK
YWGRHFWARGYFCVTSGDLTEEMIKEYLDHHFEPKAEDNFRTEG