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# Photobacterium profundum, ss9

>PBPRA3525 hypothetical protein
MVKGLIGIIEQLSDTVERQQEEITLLKDEINVLKGQKKRPKFKPSKLDTN
TDEKSDQGSTDNKRSGSTKRSKNQTLTIHQDNIVQPEQPLPIGARFKGYR
DFVVQELEIQSCNVRYRLACYLLPDGSTVTATLPNGLAGQHFGTRLRSYI
LYQYHQCQVTQPLLLEQLREWGIDISSGQLNRLLTENHDDLHEEKAELLA
AGLQSTGYITTDDTGARHQGKNGFVTHIGNEWFAWFQSSDRKNRINFLSL
LRAGNKGYQVNTCALNYMATNKLPAPQLALLANTPVTNFGCEEEWSAHLV
QLGIVVKRHIQIATEGALLGCASENEALGKLAVISDGAGQFKVLQHGLCW
VHAERLVHKLIPLNEGHREDIAQVRDEIWSFYKELKEYKKQPCDTKKSAL
SKEFDRLFTQKTRYELLNQQLKRLNKLKSSLLLVLERPEIPIHTNGSEND
LREQVKRRKVSGGTRSDLGRQCRDTFSSLKKTCGKLGVSFWKYLNDRISQ
SNVIPSLGSLVLQKAHPASAY
>PBPRA3552 Y4jO [Rhizobium sp. NGR234]
MKINLPDIPESEQTPLVKGLIGIIEQLSDTVERQQEEITLLKDEINVLKG
QKKRPKFKPSKLDTNTDEKSDQGSSDNKRSGSTKRSKNQTLTIHQDNIVQ
PEQPLPIGARFKGYRDFVVQELEIQSCNVRYRLACYLLPDGSTVTATLPN
GLAGQHFGTRLRSYILYQYHQCQVTQPLLLEQLREWGIDISSGQLNRLLT
ENHDDLHEEKAELLAAGLQSTGYITTDDTGARHQGKNGFVTHIGNEWFAW
FQSSDRKNRINFLSLLRAGNKGYQVNTCALNYMATNKLPAPQLALLANTP
VTNFGCEEEWSAHLVQLGIVVKRHIQIATEGALLGCASENEALGKLAVIS
DGAGQFKVLQHGLCWVHAERLVHKLIPLNEGHREDIAQVRDEIWSFYKEL
KEYKKQPCDTKKSALSKEFDRLFTQKTRYELLNQQLKRLNKLKSSLLLVL
ERPEIPIHTNGSENDLREQVKRRKVSGGTRSDLGRQCRDTFSSLKKTCRK
LGVSFWKYLNDRISQSNVIPSLGSLVLQKAHPASAY
>PBPRA3542 putative ATP-dependent RNA helicase, DEAD boxfamily
MKTTHITEQKFADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIA
GQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQI
YNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYK
QRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSAT
LSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSNQEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILE
QFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRA
GESGSSISFACEEYAINLPAIETYIEHPIPLSKYNSEALLDELPAPLRLQ
RTPRQGGNRRPNGNRQGQGQSRPRNNNRRHPQSQKQQ
>PBPRA3551 BLR6054, Transposase and inactivated derivatives [Azotobacter vinelandii]
MNSLTIGLDTAKSVFHAVEKNSRGRVLSKAKLTRAKLFTYFANKPPCTVA
LEACGASHYWCRVISAYGHKAVMIAPQYVASHRKGNKNDFNDANAIADVA
QRDDIRTVPYKSIEQQDIQLLHRVRERLVRQRTALGNQTRGLLSEYGIVL
RQGLAHLRKELPFILEESNNELTELARRQFFLLHEELLVLDEKVKQADNE
IQRVALSHPISQRLMTMSGVGPIISTILLVALGKGEHFRNGRHFSAWCGL
VPKQHSTGDKARLLGISKRGNTYIRTQLINGARSALRNASNKNDQVSRWA
ASLAERIGFNKACVALANKMARFAWAMVHNGQDYQLKP
>PBPRA3412 BLR6054, putative transposase
MNSLTIGLDTAKSVFHAVEKNSRGRVLSKAKLTRAKLFTYFANKPPCTVA
LEACGASHYWCRVISAYGHKAVMIAPQYVASHRKGNKNDFNDANAIADVA
QRDDIRTVPYKSIEQQDIQLLHRVRERLVRQRTALGNQTRGLLSEYGIVL
RQGLAHLRKELPFILEESNNELTELARRQFFLLHEELLVLDEKVKQADNE
IQRVALSHPISQRLMTMSGVGPIISTILLVALGKGEHFRNGRHFSAWCGL
VPKQHSTGDKARLLGISKRGNTYIRTQLINGARSALRNASNKNDQVSRWA
ASLAERIGFNKACVALANKMARFAWAMVHNGQDYQLKP
>PBPRA3411 FIS, putative factor-for-inversion stimulation protein
MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNGQEVDDL
YELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN
>PBPRA3550 IS22-1, transposase [Vibrio cholerae]
MPSSLCPCCGDSHIAINQKPSYRHQVHEIPEPIVNITEYQVFHGRCQNCQ
TSVKGKRPQDTPQGIMGPNLMSYIALLAGQFHLSVRKIQELLKLQLGTSF
STGAISEAQGKVSSMLTPLHQAVRDAIQKAPMVHIDETSHIRNGESSLRW
CWLMSSDDWVYERVLFSRSTHSAKVMLNEKFAGVVISDQCASYNWLNPEK
HQFCLGHLKRNLQQMADYSGGGLRF
>PBPRA3402 PA3232, putative DNA polymerase III, epsilon subunit
MNLLQRYWYQRKLKDNPYGQLFNRYQGDELVSVDCETTSLDPHSAELVTI
AATVIKNNRILTSKSIHLTLRAPISLDANSITIHRIRHQDLRAGLGEKEA
LTTLLNFIGNRPLVGYHIRYDKTILDRYYRRLFGFALPNKLVEVSHLYHD
RLERLLPNAYYDLSLEAISRHLGLPVPERHDALEDTITAALIYVRLKHGD
FPTLRSA
>PBPRA3503 PLU0386, putative DNA polymerase I
MALFNLSSPGYKNISMATIPENPLILIDGSSYLYRAYHAAPNFTNSDGEP
TGAVYGVVNMLRSLLRQFSTEHIAVIFDAKGKTFRDDIYPEYKANRPPMP
DDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGTLATQASKAGMPVLIS
TGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYLALMGD
KVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKK
LADNKEAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFR
RWLSEMLDGSDGKIVADEKASEPVEKKVVAPTIDRSGYETILDEVSFKTW
LDTLTAADVVAFDTETDSLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDA
PEQLDRDWVLAQLKPLLEDPAQNKVGQNLKFDMSILARYDINMQGIKYDT
MLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQIDLD
VAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIER
TGVLIDSMLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFE
KMGLPILKKTPSGAPSTNEEVLQELALDYPLPKILLEYRGLAKLKSTYTD
KLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQA
FIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEIL
GLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYMNVYF
ERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERA
AINAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQES
ELDAVSADVRRLMELAAELDVPLIADTGSGDNWDEAH
>PBPRA3451 RB787, putative transposase [Pirellula sp.]
MTMTLFEQHQLPCILESRLSKRYQTLIMEHMTVNSSNAPGVKSLRHHTQS
WASTQATWRFYHNEDVTFPMLSGPMLGLARSGVKESQSRYVLMAHDWCHI
NFAKHHSKLDKTKMSHALDVGYELQASLLVDANTGAPIAPAGLNLLTSNG
IYQCRSQELQPKQSHLDSLFDSIHWQEQLHLDKPLVHVVDREADSAKDLR
RLGSVHWLTRTKKGSTFRHEGQFKTAEIISRTISPDLKGVISLRGKEGYL
FVGETTVELHRKSEKLASAAPTCRFVMSLVTDDEGKELARWYLLSNVLDV
DATEIATWYCHRWNIESWFKLLKSDGHQLEKWQQTTAESILKRLITASVA
TTLIFKLYSDSSDEANEFKGFLVKLSGSFN
>PBPRA3427 RSC1329, conserved hypothetical protein
MAQHLDNVLDQIRRCEICKDHLIAGPRPIIQAHSQARLMIIGQAPGTKVH
ETGIPWNDPSGERLRRWLDLDSETFYDPQQIAIMPMGLCYPGKGKSGDLP
PRPECAPQWHHQVLPLLPNIGMTLVIGQYAQNYYLNNKPKTLTETVRAWR
QWAPRYIPLPHPSPRNTQWLKKNPWFEDDVVPYIREYVHQHLKGTRG
>PBPRA3429 S3667, putative MutT/nudix family protein
MDVILMLNKRELAYWCVVNDRKLYLLDNAIPLLEKSELTFNTDSARVIGE
YLDHPVYWLEANNCLHSDDFYTQRELLGIDQALFDLAGRATQLSHMLHTQ
SFCSVCGGAAVLADDQFAMVCQQCSNAQYPRVSPCIIVAVRKEDQILLAQ
HPRHKTGIYTVIAGFVEAGETLEQCVAREVEEETGIQVKNIRYFSSQPWA
FPSNIMMAFLADYESGEINPDYEELSDAIWAKAAELPAIAPKGTIARVLI
DETLALIKATKHVQNL
>PBPRA3508 S3855, putative ATP-dependent DNA helicase RecQ
MSSSSTAVCEPTPLAPSEKILQDVFGYQSFRIGQQEVIEAVVEGQDCLVI
MPTGGGKSLCYQIPALIMPGITLVISPLISLMKDQVDQLNANGVAAAYIN
STMSREEVMETFLAMREGDLKLVYVSPERVLMRDFIERLYETPLSMVAVD
EAHCVSQWGHDFRPEYAALGTLKQHFENLPIMALTATADDTTRNDITSRL
GLTNPHDYLGSFDRPNIRYTLLEKHKPMTQLTRYLTGVRGQCGIVYCNSR
KRVEQIAGKLRDSGVRAAAYHAGLDHDERGRVQESFQRDDIHIVVATVAF
GMGINKPNVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLA
WLRRCLDEKEEGAQKQVESHKLNAMGAFAEAQTCRRQVLLNYFGEYREEP
CGNCDICLDPPKRFNAIEVAQKALSCVYRVNQSFGVGYVVEVLRGMQNQR
IREHGHDKLTTYGIGREHSHEYWVSILRQLIHRGFLTQNILRSSTLQLTE
KARSVLRAEIELELAVPRLDVAARSAKSDKMANRHYDKKLFAKLRKLRKA
IADEEDLPPYVVFNDASLMEMAEILPTSQGEMLAINGVGHRKLEKYGSVF
LGVIEEHLMAGISER
>PBPRA3513 SF3891, putative ATP-dependent DNA helicase Rep
MDVSLLLDGLNDKQREAVAAPLGNHLVLAGAGSGKTRVLVHRIAWLMQIE
QASSYSVMSVTFTNKAAAEMRGRINELMEGSSAGMWNGTFHGLCHRMLRA
HYLDARLPDDFNILDSDDQMRLLRRLIKAQNLDEKHWPARQAAWYINGKK
DEGLRPANIDAFNDPVEKTWLRIYTAYQEACDRAGLVDFAELLLRAFELV
RDNKHIREHYQARFKHILVDEFQDTNNIQFAWLRLMAGVDCNVMIVGDDD
QSIYGWRGAQVENIQRFLRDFTNASSIFLEQNYRSTGNILNAANELIANN
NERMGKKLWTDGEDGELISLYSAFNELDEARFAVGKIKEWRNEKGGSLSD
TAFLYRSNAQSRVLEEALIQAGLPYRIYGGMRFFERQEVKDSLAYLRLMA
NRNDDASFERVVNTPTRGLGDRTLETIRLAARDRSVTMWQASVSLLEEQV
LAGRAANSLRRFIELVNALEDDTRDLPLFQQTDDVIRNSGLRAMYEQEKG
EKAQARIENLEELVTATRQFVVPEEAEEMTPLAAFLSHAALEAGEGQADD
FEDAVQLMTMHSAKGLEFPIVFMVGVEEGMFPSSRTTEEVGRLEEERRLC
YVGMTRAMKKLYITYAEMRRLYGKDNFHKPSRFIREIPTEFVEEVRMKAQ
VSRPASSGRFSQTQVNDNFNQTGFNLGQRVKHPKFGEGTIINFEGSGAQS
RVQVAFNGEGIKWLVTQYAKLDPM
>PBPRA3554 SO2276, putative transposase and inactivated derivative [Vibrio vulnificus YJ016]
MKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQ
FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI
MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF
KDYDEILDKVCSAWNSFLSDTKRVTRMCARSWISLTS
>PBPRA3553 SO2874, transposase and inactivated derivative [Vibrio vulnificus YJ016]
MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTS
VNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGG
RLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQ
DDFKKI
>PBPRA3470 STM3494, putative MutT/nudix family protein
MAADKNKPEILSTEVVAQSRLFKIESLELRFSNGVERTYERMMPSGRHAV
LIVPVTADGNLLLIREYSAGTDNYELGFPKGLIDAGESAEQAANRELKEE
IGFGSNSLQALKEVVLAPSYFSSRMTLFLAQDLYPEQLEGDEPEPLEIVR
WPVSQGEELINHLDFAEARSITALFLALKQLSQ
>PBPRA3575 T4101, putative DNA topoisomerase I-related protein
MRVICSMAGKVHDQLFDAHEHALEQEEPCPTCGGQLQTRYGKRGPFLGCS
NYPECDFIRPQNQNDGHIVKHLGKPCPSCDSELVLRQGRFGMFIGCASFP
DCQHIEPLEKKADDTQILCPDCHKGHLVQRKSRYGKVFFACDQYPACRFA
VNNKPVAQQCETCGFPLLVEKDFATGIKLQCADKKCHHIQQ
>PBPRA3520 VP2981, putative integrase/recombinase XerC
MGIQPRGYRLSSLPTALEKPLQFFYEYIRSERELSLHTQQNYKRQLSTIA
EQLVSFEVTDWTMVDAGWVRQIASKGMRDGLKASSISMRLSALRSFFDFL
VQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVNEDDPLSIRDRA
MMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLARE
WVANWLKVRGALASGDEVGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSH
INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKV
YDEAHPRAKRGRR
>PBPRA3422 Y0499, putative DNA-binding protein HU-alpha
MNKTQLIDQIAEKADLSKAQAKLALESTLEGITDALKDGDQVQLIGFGTF
KVNHRAARTGRNPQTGQEIQIAAANVPAFVSGKALKDALK
>PBPRA3577 Z4656, Hypothetical Smf protein
MMTTLESWLILAAVPYLGGCRISKLLQYATPIELIEMPAEQLRAIGLSSA
QVAALHNPKRQRIDHALIWAEQNNHTILTLDSPFYPALLKEISSAPPLLF
VRGEDRWLREPQLAVIGSRSASLDGREAAYDFSAALVAANYVVTSGLALG
IDGQAHYGALKNGGATVAVLGSGLNHIYPASHRTLASQIIEQGALVSEFW
PDEKPRPQNFPRRNRVISGLSVGVLVIEAAERSGSLITARYALDQGRDVF
ALPGSIHNPGSRGCNALIKSGAKLVESPVDIFEEVGALTECAINSQMNLS
LPQPENEELPFSAVLATVGKEAIPVDVVAERCKLPIHEVMMQLLDLELQG
VVSTVPGGYIRTRRG