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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 17

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# Photobacterium profundum, ss9

>PBPRA2541 hypothetical protein
MPNDSIDNLLISISRLVTVDSAGVAIAEIDLREGGILIGGGNIGKTSILN
AIRLFLLPEENFKDSAKKFGFSDKEGKFFSNDESFEHYFPSNSSFLILEC
DNYLGGRLPHCQILYRGSTDKLDYRRMFTSLRYEQIRHLFWDANAGADGI
GGRVEDLSPTKVQTFLKREDKYFKTLMRSAAIKEVIYANQLLDIDAMRFC
LFPLSTTNDADVGAFRALVRLLFDMKTSSDTVRLAVANIIESQKKERKDE
LNLDIDAFIEHNDALARRERLLKNIESLRPEFENLSTSHQDLMRNKNAED
ELMKFAMMAQNRIDKERTELGLEQNQFKLMENRANAIRKECRETESAQKN
LEGEIKTLLRQQAKLDGTVQKTQLVVNQYDETESLETIISGHREHLAKKE
KKLELKQNAEKRQEELLDLNQEISKFEAMEHRYQTSVNNQEFKLFNQLSE
SVWLKLAAVNFEVAEANPGRMLTPSEAQTIRAFADLVVIDELGYELLGVK
LEGVSVDKRESDQSRLDKVRAVLERKCKRAAEVNAMDKESRFEQVKTITV
LKTEIKRTMDEIELLLACNSNTQQLHTLNEELETVKNRQLDLERQLESQK
EVLDSEQQAYSVQEVKVGQLKSDLEKLGQYQISTKAQLEAHGLSTSDFSV
LPDHALELNEESLHSRIENLQSKRKAKADIEEKVRNFVRNRVIENDDQLM
RSPVEVELLEHAFQQLQSRYQGLDEEFDILRKNFVEHKHSVHSIINELKN
NREMVRQFEQSINRAFDGVTINDLAQVEAKIKVEARFSDLVGEIEHLDAH
SDQKASEQFIDRLKAFSRKFFPDGKAALLTMEQIVSGIAYRVKKQGQSGW
ESKSQSTSTIMLINLKLVEILLGRLRNSACTTHFPLIIDEGASIDSSQFD
WLLPNMKQAGFRVLSASTNSASSEIIFKFGQHFRLDAMRTATPYHSARTI
AFTGMPDSFVTKGSALDREQLDMFGEADE
>PBPRA2662 hypothetical protein
MVKGLIGIIEQLSDTVERQQEEITLLKDEINVLKGQKKRPKFKPSKLDTN
TDEKSDQGSTDNKRSGSTKRSKNQTLTIHQDNIVQPEQPLPIGARFKGYR
DFVVQELEIQSCNVRYRLACYLLPDGSTVTATLPNGLAGQHFGTRLRSYI
LYQYHQCQVTQPLLLEQLREWGIDISSGQLNRLLTENHDDLHEEKAELLA
AGLQSTGYITTDDTGARHQGKNGFVTHIGNEWFAWFQSSDRKNRINFLSL
LRAGNKGYQVNTCALNYMATNKLPAPQLALLANTPVTNFGCEEEWSAHLV
QLGIVVKRHIQIATEGALLGCASENEALGKLAVISDGAGQFKVLQHGLCW
VHAERLVHKLIPLNEGHREDIAQVRDEIWSFYKELKEYKKQPCDTKKSAL
SKEFDRLFTQKTRYELLNQQLKRLNKLKSSLLLVLERPEIPIHTNGSEND
LREQVKRRKVSGGTRSDLGRQCRDTFSSLKKTCRKLGVSFWKYLNDRISQ
SNVIPSLGSLVLQKAHPASAY
>PBPRA2667 hypothetical protein
MTASFSRLTPKQCDILLTLAFSIDQNTHSSLLAEHENSGSKSMKAVDLTS
RLAGLMRVGLIEQDDSQSYELTISGLAHLIGYQVDEEFDIGRAIMALNFE
TSPWVEVLLVCLDFRWLLHNGMSEEASEIMRQLMINPLVWPMIDRLSTSV
AESLLPETWFGHILNSPYPKWIMPAIDQLDLWEDDLIALDWRADLHWLEE
GDASHSGAYNDVYNSKGVLADTLTLDVVSQFPWVKNAVGLSASKSVVATK
YGVGSLIEVAAVALFDLPLAKARTEQLYTGLMNNTEAEFAPSWCEYLTLL
TSDVAELEAYFSDLTYWSNTLVNDDIAWGRIYLDVLMACRLIDSDPEVQD
RFITALTNDAVISRILTAKMPHLLAQRAVAGLKHILLLPEVSSFRQAMPV
WEQWLNGLTQLAELPQSNQQGSQRLVWQLTPRYTHISAKIQKLGKKGWSK
GRQVQLDDLHYKYPELMTNEDHELVAVINGQLNRSWGSWRAEVELNVSLL
KVLVKSDNIIDEAGNSLTLYAEKPLVVLSAAEDRLALSSFPSQTSTLLYP
KAGDALAFLDLSDQVSTFLAAVKNYPASLPLTACEQVESTLAQFSQLDWY
SDINQQGTVTLGEWNTQPQVWLDWHDGVLGVSIEHQPLDSEQSGVALSYP
SGQGAQWVPQGVTSPIWYRRNLKQEQSASLTLLKAIGLKANVKRQWRLLG
DHALNMIQMLPNIKDVPIHWRAKSQQLSVVGTQDFRLEVEQQQDWFALEG
KVEVDKDLELNLRTLLSHNRAGFIRLENEGITVMLSKTLQQQLRVLESLL
NDDHQVDQRMAYPLQQLIATFSHQGDDGWKALVEQWREKPVLAAEILAPL
RDYQKESVNWAAHLAHHGFGACLADDMGLGKTLQALTLIRHFGAQGASLV
VAPKSVLLNWQQEALRFAPELTIIDVESASDRTAAIEQADANSIVLLSYG
LLSRLETTLHEKQWQCAILDEAQQIKNPNAKRSKIAFGLQAKCRFTLSGT
PIENHLLELWSLFSFLNPGLLGSRQQFKKKYGNAANSEEDMLRLRTLVSP
FIMRRLKQKVLTELPSKTEITHTIELSKTERTAYEAIRKESVAVAKSGKG
MVEVLACLTRLRQVCCDSRLVFSEMDQPSSKLNEALQLVKEAREGQHRIL
VFSQFVTLLKMFADQLEGDGINYSYLDGKSSSRQRKQAIDAFTSGKKEVF
LISLKAGGTGLNLTEADTVIHLDPWWNPAVEDQASDRAYRMGQTKPVTVY
RLVATNTIEEKIVLLHQSKRDLADKVLSGQDGNQSLSPELLLTLMDEE
>PBPRA2433 BH1021, hypothetical 6-O-methylguanine-DNA methyltransferase
MAVMMYYDVIDTVLGKIYLLADSKGLRQLTVGSAGFCPDSSWEHDPDAMK
PYTNQLTEYLSGKRQKFTIPLAPQGTPFQQQVWQTLTEIPFGETFNYQQI
ADKLGTSNAAPAIGITRNVNPIPIIIPCHRVLNSNNSLCNYRYGQEVVSQ
LLALESGQLSLIPTIIK
>PBPRA2520 BLL2800, hypothetical protein
MGAYMTQTSSNTYSAKECVSSSDLNKIEVALNTPSKQQKSSLFSSNKKVE
NRLHVAMGGYSIAGVRPVNQDAFSVKLPSNNNVVKYKGIVACIADGVSCS
ENAQQASQTSVTQFIDEYYSTPDSWNVKKSASTVLTSLNQWLYQHGQYSD
LRHNGLVTTFSGVVLKSNTAHLIHVGDSRIYRYRQGKLILLTRDHCRKQK
GRNSFLTRALGMDSHLEVDYQQKSIEKGDIFFLSTDGVHEWLSNNEITAL
IYEGKKENRDREQQAKAIIAQAQANGSDDNLSCLLLEVLDVPSLNIEEAY
NQLTEKVIPPILKVGNTIDNLKVVDVIHSGTRSHVYLVKKIEDNAEAAHY
ILKAPSPNFAEDLLYLEGFTREHWVGCQLNNASIMKIYDHNTSSPFLYHL
CEYVEGQSLRQWMYDNPKPSFESVRIIAKGMIKAIRVFQRMEMVHRDLKP
ENIMLAKDGRIVIIDFGTVQVDGLDEIASPVSEDVPMGSVDYIAPEYLAG
ERAQHQSDIFSIGVILFEMLTGKLPYVTRPSRVVQSIPHQDWHYISACQY
REDIPFWLDITLKKACQPSPKLRYQAMSELQQDFTSPNPQIVAEYDKSPL
IKRYPISFWKVVSLVLLVIVLAEGYFLMTIS
>PBPRA2411 BMEI0462, Hypothetical MutT/nudix family protein
MISQQQILSRFMLAPTTDYDKSHNERVRQHVSATDTFKPAAVLIPLVPRN
NTYNVVLTRRANHLKHHPGQIAFPGGRHESFDQDLAATALRETEEETGIL
CSRNHILGQLPALPTISGYMVTPFLSTIAADYQPKLDPSEVDELFEVPIQ
YLLNPVNMRSQQFQINGHLHNIYSIPFSNYSIWGATAQMIKLLSKQLWY
>PBPRA2590 C2166, putative DNA topoisomerase III
MTRLYIAEKPSLGRAIAAVLPRPHKNNNGYIETGNGDIVTWCIGHLLEQV
EPDAYDEKYKKWNMADLPIIPEQWQLSPRKSVKQQLAVVRKLAKQATDIV
HAGDPDREGQLLVDEVIDYVKVSAKKKTEIQRLLISDLNPAAVKRALSTM
RSNREFIPLSVSALARSRADWLYGMNMTRAYTLLGQKGGYRGVLSVGRVQ
TPILGLVTRRDDDIANFKPKPFYEVFALIPYQDMDIRARWKPSEACQPWQ
DEEGRVLNRQLCENVLKRIKGQPAEVTESERKETRQAPPLPYSLSALQID
AAKRFGMSAVDVLANCQSLYEKHKVITYPRSDSRYLPNEHFKQANDVCRA
VASNASELSNACNGANTTLKSKAWNDKKVDAHHAIIPTPKQISPNALSGS
ESKVYQLIARQYVMQFYPAAIYAEAKLVFTITQGHFIARGRQLMSAGWRE
LLGRDHAEDKTKVAGNSDQGLTDKVPPLDKGTILTCREGEIKDKVTEPPK
AFTEATLLQAMTGIARFVSDSSLKKILRDTDGLGTEATRAGILELLFKRQ
LLMRQAKNIHATDAGRGLVYALPDEATYPDMTAHWEHQLQDMADKKCAYQ
PFMDALQQQVSQLMDKVKYSEVPESLRQLTSPESRKPMKKKRYTKSKKS
>PBPRA2456 GYRA, putative DNA topoisomerase (ATP-hydrolyzing)
MSDLAKEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLF
AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
MLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLDKETVDYVPNYD
GTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPHNLGEVINGCLAFIDN
EDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAKANIEV
EKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGM
RIVVECKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFGLKEML
KCFVNHRREVVTRRTIFELRKARERAHLLEGLAIALVNIDAIIELIKSAP
TPQVAREGLLASPWQLGDVAAMLERGGVDAARPEWLEPQYGIHGGQYFLT
EPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIEELLLILGSPERLMEV
IRDELHAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHEGYVKY
QILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYW
LKVYQLPLASRTARGKPIVNILPLEEGERITAILPVREYEADKYVFMATA
DGTVKKTPLTDFSRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFG
KVVRFYESADENGKGGVRGMGRTAAGVRGMKLAAGDKVVSLIVPHNEGDV
LTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDE
FMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTADKELVVGLQRIDELEV
VELEEDAIVDGDVEVAVDGEQVVDTDAAQQPEADSEQGESTDEE
>PBPRA2449 IHFB, putative integration host factor, beta subunit
MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMAGTLAEGDRIEIRGFGS
FSLHYRAPRVGRNPKTGDKVELDGKYVPHFKPGKELRDRVNAAIAA
>PBPRA2572 SO2755, putative ribonuclease T
MSEQNELNTLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDG
WLKPASTIHFHVAPFEGAVLHKEALEFNGIRDPFSPLRGAVSEETALKEI
YKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARLKRNPFHPFATF
DTAALSGLAFGQTVLAKACKTAGIAFDNKEAHSALYDTERTAELFCEIVN
KWKKLGGWPLFESQTEEIDKSQN
>PBPRA2517 SO2855, putative DNA polymerase III, epsilon subunit
MMKRLFQTPSIDWTTRHANKQASAIHPFLKAFYSAPLVTGDMPLDEIEFV
AMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPRQKLNEQSV
VIHNITHNDILDAPDLSEVIEPVLAALAGRVVVVHYRRIEREFLDRALKA
RIKEGIEFPVIDTLELEAQIQQRLNGGFWNKLKGKKPQSVRLAQARKRYG
LPAYTPHHALTDAIATAELLQAQIAYHYDAKKPIKDFWL
>PBPRA2566 STY1669, Putative endonuclease III
MNNQKRTQILERLRAENPHPETELKWSSPFELLIAVLLSAQATDVSVNKA
TDKLYPIANTPQAIYDLGVEGVKTYIKTIGLFNSKAENVIKTCKILLNKH
NGEIPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVSNRTKF
AMGKNVDQVEEKLLKVVPTEFKVDVHHWFILHGRYTCIARKPRCGSCIIE
DLCEFKDKIYPDE
>PBPRA2477 TOPA, putative DNA topoisomerase I
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTGARNAGKKAAA
QSTAGLSVEEKARLKKIKDRKSLIGKMGVDPYNDWDAHYEVLPGKEKVVS
ELQKLAADADFIYLATDLDREGEAIAWHLREIIGGDDARYKRVVFNEITK
NAIQQAFEEPGELNIDGVNAQQARRFLDRVVGFMVSPLLWKKVARGLSAG
RVQSVAVKLIVEREREIKAFTPEEFWDIHANTLTVGKDALRLIVSQQAGK
AFRPVNEAQTMAAKSVLDSAEYKVVDREDRPTSSKPSAPYITSTLQQAAS
TRLGYGVKRTMGLAQRLYEAGYITYMRTDSTNLSNDAVVAAREFIGSEYG
ENYLPKEAIKYGSKKNAQEAHEAIRPSSVEVQAENLEGMDADAVKLYDLI
WRQFVSCQMVPAKYDSSTITVQADEFTLKAKGRILRFAGWTLVQRPSGKN
EDTTLPIVHVGDVMILEGVEPKQHFTKPPARFTEAALVKELEKRGIGRPS
TYASIISTIQDRGYVRVDQRRFYAEKMGEIVSDRLDGSFPDLMDFDFTAR
MEGNLDKIAEGEKNWKAVLDNFFSDFTTELERAELDEDEGGMKPNNIVVT
DIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKKTINLGDEDGIVNV
LEEDVETAALRAKKRCPKCDTAMDAYLIDQDRKLHVCGNNPSCDGYIVEK
GEFKLKGYEGPLIECDKCGSDMELKTGRFGKYMGCTNEDCKNTRKILKNG
EIAPPKEDPVHLPEIPCTQDSNAYFVLRDGASGLFMAASTFPKSRETRAP
LVSELVRFKDRLSPKFYYLAEAPTEDPDGREAVVRFSRKSKENYVRTEVD
GKPSGWTGLYVDGKWEITDKRKKPKKEKAEKED
>PBPRA2428 VCA0202, putative transposase
MIMDYRYGSHTVFKIQYHFVFVTKYRYQVLTGDVGLKARELIRQTCHAFE
IDILKGVISKDHVHLLVSAPPNMAPSEIMRRIKGRTSAKLFESYPDLKKK
YWGRHFWARGYFCVTSGDLTEEMIKEYLDHHFEPKAEDNFRTEG
>PBPRA2704 VCA0202, putative transposase
MIMDYRYGSHTVFKIQYHFVFVTKYRYQVLTGDVGLKARELIRQTCHAFE
IDILKGVISKDHVHLLVSAPPNMAPSEIMRRIKGRTSAKLFESYPDLKKK
YWGRHFWARGYFCVTSGDLTEEMIKEYLDHHFEPKAEDNFRTEG
>PBPRA2632 XCC2781, putative DNA uptake protein
MNTIIKMALFSVLLLLAPLSQAANEYEGIEIKININNANAEELDKLLIGI
GPEKAESIIIYRKEKGDFQTADDLINVKGIGLATVDKNRERIEL
>PBPRA2634 YPO3154, putative bacterial nucleoid DNA-binding protein
MLTDNVHRGDEIVNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKD
GDQVALVGFGTFSVRDRAARTGRNPQTGEEIQIAAAKVPGFKPGKALKDS
VNL