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# Photobacterium profundum, ss9

>PBPRA1116 Putative holliday junction DNA helicase RuvA
MLDIHPALYYPRANFNSYRDSAVIGRLSGTILEKQPPEVLIDVGGIGYEV
QMPMSCFYELPEVGQAAVICTHFIVREDAQLLYGFNKKSERELFREVIKA
NGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKTAERLVIEM
RDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKAL
QAAKVVSQVVKPEMSSENIIREALRSMV
>PBPRA1219 hypothetical protein
MVKGLIGIIEQLSDTVERQQEEITLLKDEINVLKGQKKRPKFKPSKLDTN
TDEKSDQGSTDNKRSGSTKRSKNQTLTIHQDNIVQPEQPLPIGARFKGYR
DFVVQELEIQSCNVRYRLACYLLPDGSTVTATLPNGLAGQHFGTRLRSYI
LYQYHQCQVTQPLLLEQLREWGIDISSGQLNRLLTENHDDLHEEKAELLA
AGLQSTGYITTDDTGARHQGKNGFVTHIGNEWFAWFQSSDRKNRINFLSL
LRAGNKGYQVNTCALNYMATNKLPAPQLALLANTPVTNFGCEEEWSAHLV
QLGIVVKRHIQIATEGALLGCASENEALGKLAVISDGAGQFKVLQHGLCW
VHAERLVHKLIPLNEGHREDIAQVRDEIWSFYKELKEYKKQPCDTKKSAL
SKEFDRLFTQKTRYELLNQQLKRLNKLKSSLLLVLERPEIPIHTNGSEND
LREQVKRRKVSGGTRSDLGRQCRDTFSSLKKTCRKLGVSFWKYLNDRISQ
SNVIPSLGSLVLQKAHPASAY
>PBPRA1017 Hypothetical DNA polymerase III, subunits gamma and tau
MSYQVLARKWRPYQFSDVVGQSHVLTALSNALTHNRLHHAYLFSGTRGVG
KTTIARIFAKGLNCEQGITATPCGQCGTCKEIDEGRFVDLLEIDAASRTK
VEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYV
KFILATTDPQKLPVTILSRCLQFHLKHLDNDQIQSQLSNVLTQENVDFEP
KALSLLSRAAEGSMRDALSLTDQAIALGNGQVHADSVSMMLGTLNTDQAL
FLLEAVSGGQANTAMGGLEELASVGVEWDSLLRELAAQLHRVAMHQALPA
ALDMSAPDADRIITLSSVMTPQDVQLCYQIALQGRQDLAFAPDGRIGLEM
VLLRMLAFRPVSGSGITPQSINVPASEPAAPQQGMQRVQALKAQMGSQPQ
AATSQVTIPQVVAPHAVAPQHSDQQLAASPSSIQESAGTVPAEQQYQQHQ
QVPTSQEAFRQEPSRQEPTPPPAQYQQQAPHSEQSAAPQNIPPAQPRSAA
SGLLAARNKLRSQSKRGNEEQPVKKGEPAPAKKVAMNVLDRIANKHAGMR
VPTTGNTATNSAMPASMIATQANGTQANVPEKKDEYQWKPMQPVAPEEDT
KLEVAPRKLKQALEHEKTPEMAKLLVNEAANQDSWSDLVTKLNVGRLVQQ
LALNSAFEQDNNQVTLYLRQSQSHLDNPKAREQLAQAIGELQSVDIDLKI
ELSGKGQTPLEWREGLYQQKLGQAKESLESDANVTFIRQRFAAVLDEDSI
RPL
>PBPRA0979 putative transposase
MMNRKVMPLSDSFYDEFDLSSGVVIDEQPTEVFSTSVARDLATYSSQQQT
EAIFRLKLIKFLVRRIYGGWTQKNLEPLLLEAQSTFNEKLPNWRTAARWF
SCYRSTGYSIESLIPKHHKRGSRAIKKTNSERFYNLALDEKYLTHERPSV
ADAYQFYCDLIDNYNSGKERKVKPISKRTFYNRINRLPPYDVDLARYGKE
YTERKYRTIGRFPRPSRVLERVEIDHTPLDLMLVDDELLLPIGRPYLTLL
IDVYSKCVLGFYIGFNEPSYDSVRRALTVSCLSKSWVNTKYPDIKNEWPC
EGKIRELVVDNGAEFWSKSLDDACAVVVSNIDYNRPGQPWCKPLIERFFG
KINQKFLIAFPGKTFSNPIKLDGYKPEKDAVMRVSTFMDLFHKWIIDIYH
YEPDSKMTSIPIVKWKESVSKHMFPVYRDDKAEKLKIDLAKVDVCALQKS
GIHIHRLVYTSDELMQYRKCHPVPCGEKSLKLKVKTLHTLISHINVYLDE
EHRYLKVPCVDPDGYTEGLSLFEHDINHRFITTFTESQVDTALLAESRLY
LHNRKKEALFQIIVVIGMPLLTFAEN
>PBPRA1114 putative crossover junctionendodeoxyribonuclease RuvC
MTIILGIDPGSRITGYGVIRQVGRNLEYLGSGCIRTSAEDIPGRLKQIYA
GVSEVITQFQPDTFAIEEVFMGKNASSALKLGQARGSAIVAAVNADLPVS
EYAARLIKQAVVGTGAADKAQVQHMVCSVLKLPGKPQADAADALAVAICH
AHTHKTLIAMSGKASSARRGRYR
>PBPRA1117 putative holliday junction DNA helicase RuvB
MIEADRLISNSFESRDDEVIDRAIRPKLLNDYQGQDHVRGQMEIFIKAAQ
LREEALDHLLIFGPPGLGKTTLANIVANEMGVSIRTTSGPVLEKAGDLAA
LLTNLEPNDVLFIDEIHRLSPHVEEVLYPAMEDYQLDIMIGEGPAARSIK
IDLPPFTLIGATTRAGSLTSPLRDRFGITQRLEYYKVDDLKDIVQRSANC
LGLSMEEEGALEMAQRARGTPRIANRLLRRVRDYAEVVGNGIICSDTAKK
ALDMLDVDSSGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEEKDTIED
VLEPYLIQQGFLQRTPRGRIATHRAYLHFGLDIPEAR
>PBPRA1011 DING, putative ATP-dependent helicase, DinG family
MLHSQIKSDIKQCYENLGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHR
MLVGEAGTGIGKSLAYLLGGIPFALFNNKKLLISTATVALQEQLINKDLP
LFNRIYPKEFSFILAKGRQRYCCNHKLEACCATNNDQQVTLWEEKPKKSD
LDLLRRMLKATRDGKWDGDRDSWPTTIPDRVWPQIMADKHSCHAGLPQHR
SCPFAKAREHLDKADVIIANHALLMADIELGGGVILPEPEQTIYVIDEAH
HLPKVARDFSSAASSLKGAATWLEKLNQTIGKLAELAEYKKAARFQDAIL
ENIQHLIPTLRQVANNVDVGMFSKDGIYRFEHGELPAWLEQEAKGCKDAS
KKALQSLGKIHDLISERLKDNEIQQRLGEQALAESGVYLQRLENLEKVWA
LMAQPKKDKGAPLARWIEKNPDNEGDYIIQVSPLEVGYRLDQLLWSRAAG
AILVSATLRALNQFTYFCRQVGIYEMDSTRFLALASPFDYQNNARLVIPA
LSLEPQADKFTDLLIKTLPEYLEGETASLVLFSSYWQMNKVADELRPLAK
KNKWELLVQGEESRHITLKKHKDNCKSGKPSILFGTGSFSEGLDLPGDLL
KNLIITKIPFGVPTSPVEEAHAEYIESCGGNPFMQISVPEASKKLIQSVG
RLIRKEDDMGRVVLLDRRIINRRYGKALLDSLPPFKRVIEYS
>PBPRA0980 NE0134, hypothetical transposase
MRAKTFTYRLKYITRLLLDMTPAQREQVKLNIQSIQPEITVGDIIQPIFD
ISPQCPHCHSLHFNKWGKSGSVQRYRCKECAKTFNIKTKTPLAKLHKCDL
WLQYAECMELKLPLRQAAKICNINLKTAFLWRHRFLEAQSEQYKDKLSGI
IEVDEFFLAYSEKGTKKLNGDRVARKRGGEVDKRKRGEQVAVLLSIDRSK
HMIDGVLADDTASEISSHLEPYIVKDSILCSDGAWAYVSIAEETNCDHKR
LISNENRVQDKIYHIQTVNGAIAHFKGWIDIKMRGVATKYLPHYLAWFRE
SYAGLNFQQMLVAAYR
>PBPRA1228 PLU1779, hypothetical helicase IV
MRLSASVLAQWFVQGDYFSIELNEHSLTLDSQTETSTISFDDWDGAIEVH
RGVVWGSLELTSADQQYCWTIHGLPWQQCKPFAARLLESYRDWAHGRVDR
LDKALPDVLNRINSFATQQGYLRESEHDNLCKFLDDSLKTTGLTPELAAS
FRPMAFERIEPWLEGNGDWVEENNREWLTSEAEKWSSWFDKFETSPLNSS
QREAVLINQDHNLVLAGAGTGKTSVLVARAGYLVANQAAQPEEILMLAFG
RNAAEEMRERLALKVNNRIKVATFHALGTQIIQSVENERPNVSPLALDDK
AKAQWITSTLKEQWESAASAKRWQKHLTQWRIPGFKADNSMEQQAKNEQL
ASWVWRHIELIGQSGLSKSDLVAIIDKSNNPATKQRMKSELGLLWPCFRA
YEQHLKSNKQIDFNTMIQKAVEYVNDGKFVPEWRFIMVDEYQDISPQRLS
LIEALCRSEEETKPRPTLFAVGDDWQAIYRFAGADVNLTTGFADRFGSSH
ITELDTTYRFNSMIGEVANTFIQQNPQQLRKDLTSHKKQKRKAVTLLCQD
LLEQELVQLASQNEKPVTVLLLGRNNKQRPEKLKAWQTQWPQLNMTFMTC
HGSKGREADFVFILDVNRGVFPAPERETGLAACLQSKNEGYADAEERRLF
YVALTRAKKHVWVCADPEKTSSFVNELIDDKYAVMNKIKRMKVK
>PBPRA1019 RECR, putative recombinational DNA repair protein
MRTSHLLEQLMEALRCLPGVGPKSAQRMAFNLLQRNRQGGLQLADALNRA
MTDIGHCRDCRTFTEDDICAVCANPRRQENGQICVVESPADIVAVESTGQ
FSGRYFVLMGHLSPLDGIGPSDIGLDTLEFRLQKETIAELILATNPTVEG
EATAHYIAELCHEYGVPATRIAHGVPVGGELELVDGTTLSHSLAGRQKLN
LY
>PBPRA1070 S1535, putative ATP-dependent helicase, DinG family
MIKSFFAAKGALDKAIPGFQARQPQIDMAQAVDDAICNKTQLVVEAGTGT
GKTFAYLVPALARGKKTIISTGSKNLQEQLFHRDLPLMMRSLGFTGRVSL
LKGRSNYLCLDRLSRQMTESHGVHADPTLLSQLIKVRSWSSATKSGDLGE
CDSVAEDSPVIPMITSTNDNCLGRDCPSFDDCFVVRARRKAMESDVVVVN
HHLFLADLAIKETGFGELIPEAEVFIFDEAHQMPDIASQYFGQSLSSRQL
QELAKDVEIAYRTEAKDMRQLQKTADRLTQAAFDLRIVLGEPGFRGNWRD
AMKAPAVQRELTRLNDALDLTYDVLKLALGRSQLLDAAFERATLLKARLN
RLCDTSIPGYSYWFECTPRHFTLHITPLSVAEKFREQMALQKGAWIFTSA
TLAVDDDFSHFSHRLGLEPKQQFSLESPFDYQQQALLCVPRFLPEPNSFG
TADSLVEMLTPLIEANNGRCFFLCTSHQMVRDLAEGFRAKLDLPVLVQGE
TTKQKLLAEYLERGNALLVATGAFWEGIDVRGQALSCVIIDKLPFTAPDD
PLLKARIEDCRLRGGDPFSQVQVPDAVITLKQGVGRLIRDKQDKGVLVIC
DNRLVTRPYGAVFLRSLPQIPRTRDISRVGQFLSEVNGVDTPVTDDH
>PBPRA1118 SF0729, Putative excinuclease ABC subunit B
MSKVFSLSSGFSPAGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTIA
NVIAESNRPTFIMAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEA
YVPTTDTFIEKDASVNAHIEQMRLSATKALLERRDVIIIASVSAIYGLGD
PDSYLKMMLHVRRGDMLNQRDILRRLAELQYTRNDVSFERGHFRVRGEVI
DVFPAESEHDAIRIELFDDEVECINVFDPLTGAVLQKDLPRCTIYPKTHY
VTPREKILEAIEKIKDELVVRRKQLMDSNKLVEEQRISQRTQFDIEMMNE
LGFCSGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVSQIGA
MYRGDRSRKENLVEYGFRLPSALDNRPMKFEEFASLAPQTIYVSATPGKY
EIEQSGNDIAEQVVRPTGLLDPIIEVRPVATQVDDLLSEIRIREVKGERV
LVTTLTKRMSEDLAEYLAEHNVKVRYLHSDIDTVERVEIIRDLRLGVFDV
LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGR
AILYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILEL
GKPSSRSRTNKAAQLNRVAESKGTYVNLSPQQLELEIQRLETEMYDLAQN
LEFEKAAEARDKIHTLRQQFIMNS
>PBPRA1164 SF0851, putative ATPase protein
MSNFSLDFSSDFRPLAARMRPRTVEEYIGQQHILGVGKPLRRALEAGHLH
SMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIDKAREN
KMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNN
ALLSRARVYKLKSLETAEVLAVVEQALKDSSRGISDTNLEFVDDVKERLS
ELVCGDARMSLNYLEQLVDMAEENKAGIKYITLELLAEVAGEKIGRFDNK
GDLWYDMISAVHKSIRGSNPDGALYWFARMLQAGCDPLYIVRRLLAIASE
DIGNADPRAMQVAVSAWDCFTRIGAYEGERAIAQAIVYLACAPKSNAVYV
AFAKAKQDAAHHPDYEVPPHLRNAPTKLMKELGYGAEYRYAHDEPGAYAA
GENYFPPELKDIRYYEPSNRGLETKIAEKLDYLASLDAKSTLKRYQ
>PBPRA1202 T1718, putative deoxyribonuclease
MEEITVLVDSHCHLDKLDYEQLHTGIDDVLAKAKDRGVEYFLSVGVTLKS
FPAMMEMIEPYSNVFASCGVHPLDIEEGFNFDQLKVFAQHDRVIAIGETG
LDYHYQPELAGQQQEIFREHVRLAVELNKPLIIHTRMAREDTMRILREEG
AEKCGGVLHCFTESLEMAQEAIELGFYISISGIVTFNKASELKNVVSSLP
LERLLVETDSPYLAPIPYRGKQNQPAYVREVAQNIALLKGVSVEEVEKVT
TNNFFNLFSRAER
>PBPRA0947 VC2058, conserved hypothetical protein
MGRDGLLIMLSQIMSWLPVAFSLFTIIFAIVMVRRERAARQALEMKFSAI
EVVLKNARQQQESFSKQFNELRAGTMGMSQKMADMAQQLEDLSDRQGEMA
MQDPEGKLYSRASKMVELGADVNELMQECDLPKAEAELLLRLQQKMTPSR
RR
>PBPRA0998 VP0151, conserved hypothetical protein
MAFLRLITALCLSVISISPSIAQELSQETIQKELTMIDDKVVLGRTEKVY
LPNITALNNIGIPAKIDTGADSTSIHAENIKITATDPIFNGLEGKALLDA
IAVEFDALTSTKLRDREDKTDIMVSFDLIHPYSGDTIAVTLPLFRLAMIK
SRGEGHLTRPVVELSLQIAGKTVLTEVNLTDRTRFSYPILIGKTFLRDTA
WVNAGYDYLQEQNTALIIGHKERAYINAIPLETSVSFTSRYSILHALNIK
VDEKAKQVSFTLEGDDKQYQKMTVPLVKMLKFSHAQRPLVYIPVQLGSID
DNAFNKPILVYLRDRSKNSSQLRLGTEALNQNFIVDLGSTYLTEQPIASF
SSISDDTTSFMMSPEEHIIIDGITVHAKPSATIKTPLIKVAHMSEDKKDT
GRMVSYELTDINNNAHSFEKPIKRKIRVGDDVRPIVVSEITLPSSLLIKD
VALKAIPANNNDSSRFDVTPNLVHGSLLINTRTTHLIHSHAALKAGYIEQ
AQVAGLSFPVKLDTGADVSSMHATDIKPFVKDGKKWVSFTYTNSSNVKKT
LTKEVIDEMRIKGRVGEKSTVRLVVNMQVKLGNIEKEIAVNLRDRSRFKY
SMILGKNFLKNDIIVSSDQQFMLTSNASL
>PBPRA1201 VV13001, hypothetical DNA polymerase III, delta prime subunit
MHHAILLLAPKGTGREVLGQQLAQTVLCNNCDSEPCGVCHSCKLFAAGTH
PDFHLIQPEQEGKQIGVDAVRQCNRWAMETSHLAGQRVIMIDCADSMGEA
GANAILKTLEEPPSGCQFILTAQSLDSLLPTIVSRCNKWRIETPDEQFVK
QWVEKQLMQTIKIESIRLNACAPLATQQFIEQGMDIRHNHLNEAFVAFLQ
PPHIGIYDVVSLCISEGIVSMKWLSYFLVDCIKFQQGVTGYLTHSESIDK
IQSVAQAVPSTILIQQVRKINELHRKLEKHSGLNIELLIVEWLTGFIGGN
NRVS
>PBPRA0975 Y1045, putative methylated DNA-proteincysteine methyltransferase
MKTAAIGQYQIYFTSGLNMDDFSAQIYTQVHQIPYGKVSTYGEIAKFSGF
PGYARHVGRLMATLPEGSTIPWHRVVNAKGMISLAGNDLIRQREKLLAEG
IDVSESGKISLRLYRWNGDPV
>PBPRA1010 YPO3127, hypothetical primosomal replication protein N``
MSDLSRLEAIVDQLLHEAIQIDRQRKEAKYPLFDEQLFHCRSKLLTPCVK
EIQHEISALRKERQAGKLLASRTQYICESIVAQIQAVQREIATQNIRKNE
PRKKAGWRKPINELRQDLAKHKEWESRLAAMVRDKEMQLSRSATFAEQQS
MQKEVLALEGRLTRCRSSLANIEKSINYSERGR
>PBPRA1039 Z0836, putative SeqA protein
MNTTMKSIEVDEELYRYIASQTQHIGESASDILRRLLMVPAEQQLEVVVP
VRPKGIIVSKDAGNEHKLDRVKEMRTLLISDEFAVQGKAIGRFMMILSSL
YRIDSDGFIEAAAIKGRTRVYFADNEEALLASGKTTKPKAIPETPYWVIT
NTNTDRKRQMVDQLMVKMNYNTDIIEKVCGVI