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# Photobacterium profundum, ss9

>PBPRA0409 putative RNA polymerase-associated protein HepA
MPFTLGQRWISDTESDLGLGTVVAEDKRTVSIMFSACEESRLYARSDAPV
TRVMFNVGDVVESHEGWSLEVKIVEENGGIFTYIGTRTDTEEENVKLREI
FLSHQIRFNKPQDKLFAGQIDRMDRFALRYRALTNQYEQHKSPLRGLCGM
RAGLIPHQLFIAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLAGRA
ERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVESLADATNPFETAQ
YVLCSLDFLRKSRRRFEQAQDADWDLLVVDEAHHLEWSEDKPSRQYQVVE
ALAEATPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYDTFVEEERQYA
PVAEAVTRLLSGEKIDDNARKTLVDLLSEQDIEPKLRLIESSDADDEHAQ
TVRHELIDSLMDRHGTGRVLFRNTRAAIKGFPERHLNMYPLELPSQYKTA
MRVSSMMSGSISAEQKAIKLLYPEDIYQEFEGESATWWNFDPRVNWLLEM
LKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIDRDKAA
AYFAQEDDGAQVLLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGRL
DRIGQQRDIEIHVPHLEGTSQALLAHWYNEGLNSFEETCPTGRAVYEAVS
DDLIALLACEKHEPEALENLIEKSAAMHHELKAKLDQGRDRLLEIHSNGG
NAANDLVTQISSKDGDTNLIAFSLGLFDTIGLNQDDKGENAIVVTPSEHM
MVASYPGLPYDGCTITFDRETALSREDLHFISWEHPMIQGGIDLLLSEGV
GATAVSLLKNKALPAGTLLLEMVYVVDAQAPKSSGIGRFLPKTPIRILLD
AKGNNLSNKVAFEGFNRQLSPVNRHLASKLVNSVQKEIHVLIAQAEQEVA
KELVTVRESAQTEMENSLQAELTRLQALKAVNPNIRDDELELIESQIQDL
TGYIGKAQIQLDSLRLIVVSHN
>PBPRA0557 putative endonuclease IV
MVRMFLQLVGCLMHRKMQPKLVLTPLHYITKNQRQWVAKPLEQDVITAFK
ARCQQYGFKSEAILPHDSYLINLGNPETEKLEKSRAAFIDEMQRCNQLGL
TLLNFHPGSHLKKINESDCLRLIAESINMAHQEVPEVVAVIENTAGQGSN
VGWRFEHLAEIIDQIEDKSRVGVCIDTCHTFAAGYDLRSEAATEVTFSEF
DQVVGMSFLRGMHLNDSKGKLGSHLDRHHSLGEGEIGWDCFRYLMQASGF
DNIPLVLETINPDIWQQEIMMLRSFVASE
>PBPRA0511 CBU1270, putative transposase
MNSLTIGLDTAKSVFHAVEKNSRGRVLSKAKLTRAKLFTYFANKPPCTVA
LEACGASHYWCRVISAYGHKAVMIAPQYVASHRKGNKNDFNDANAIADVA
QRDDIRTVPYKSIEQQDIQLLHRVRERLVRQRTALGNQTRGLLSEYGIVL
RQGLAHLRKELPFILEESNNELTELACRQFFLLHEELLVLDEKVKQADNE
IQRVALSHPISQRLMTMSGVGPIISTILLVALGKGEHFRNGRHFSAWCGL
VPKQHSTGDKARLLGISKRGNTYIRTQLINGARSALRNASNKNDQVSRWA
ASLAERIGFNKACVALANKMARFAWAMVHNGQNYQLKP
>PBPRA0576 ECS3688, putative DNA mismatch repair protein MutH
MQPTPKSESELLLRAQDLAGSTLGELAEQAGIITPPDLKRDKGWIGQLLE
WHLGAMAGSKPIPDFPELGIELKTIPIGYSGKPLETTFVCVAPLIGLHGL
HWGNSHIRHKLARVLWVPVEGERDIPLADRHVGSPLLWSPSIEEEQQLRQ
DWEELMDMIVLGRVEHITARHGEVLQLRPKAANSRALTEAYGANGQPIKT
LPRGFYLKTHFTAAILARHFIL
>PBPRA0577 HD0172, putative MutT/nudix family protein
MIDGDGYRPNVGIVICNSHGQVFWARRYGQHSWQFPQGGIDEGETPEQAM
YRELYEEVGLTKKDVRILASSRHWLRYKLPKRLVRWDSKPVCIGQKQKWF
LLSLECDESRVNMQRGSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRALKE
FAAIAMPFKERKERKLKRYKSKRG
>PBPRA0510 MT3534, Hypothetical transposase
MRNPSGLENSHSQLSRIYGSKRVSLIFIIMPCNARGSIYGITYLPTTVKG
LFFYLYMVMDVFSRKVVGWQVHDNESSALAADLMTDICKREDIKRGQVVL
HSDNGSPMKGATMLATLQELGIMPSLSRPSVSNDNPYSESLFRTLKYRPE
YPEKGKANSKEVEAA
>PBPRA0456 PARC, putative DNA topoisomerase IV
MTDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRII
YAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYR
YPLVDGQGNWGAPDDPKSFAAMRYTESRLSRFSEVLLGELGQGTADWVPN
FDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPPHNAREVANAAVHLL
DNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRGSIRMRAIWH
KENGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTR
IVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEI
ITEWLVFRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNE
ENPKAELMSRFDLSVIQADAILEIKLRQLAKLEEIKIRSEQDELAKERDY
LDKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDLIP
SEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNYLAHARGKSNLPAILI
GSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDEQMWLM
GSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILV
ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQG
EQVTIHAGKRKMGLKASDLDNFRGERGRRGTMLPRGLQNVTRLEITSTAQ
ASDSPE
>PBPRA0451 PLU3953, Putative MutT/nudix family protein
MTQKVSLSENQPFYTKDDVEILSSEKVYNGFFSMVKYRLRHKLFNGSWSK
PLERELFERGHAAALLPYDPIEDKVVILEQFRIGAMVAEFTPWQLEIVAG
IIEPGESAHDVACREAVEEAGLTVTDLEKVTRYLSSSGGCSETLDVFVGR
VDSTQAQGIHGLIDEGEDIRVHVITRQEAYQWVESGKIENAASIIALQWL
QLNYLRLQSK
>PBPRA0514 RB787, hypothetical protein
MTLFEQHQLPCILESRLSKRYQTLIMEHMTVNSSNAPGVKSLRHHTQSWA
STQATWRFYHNEDVTFPMLSGPMLGLARSGVKESQSRYVLMAHDWCHINF
AKHHSKLDKTKMSHALDVGYELQASLLVDANTGAPIAPAGLNLLTSNGIY
QCRSQELQPKQSHLDSLFDSIHWQEQLDLDKPLVHVVDREADSAKDLRRL
GSVHWLTRTKKGSTFRHEGQFKTAEIISRTISPDLKGVISLRGKEGYLFV
GETTVELHRKSEKLASAAPTCRFVMSLVTDDEGKELARWYLLSNVLDVDA
TEIATWYCHRWNIESWFKLLKSDGHQLEKWQQTTAESILKRLITASVATT
LIFKLYSDSSDEANEFKGFLVKLSGRLTKRTKPVTQPSLLAGLWVFLQMC
EVLDTYTMDEINAMRQIASSFFAQSV
>PBPRA0558 S2815, putative uracil-DNA-glycosylase
MSHTNTWQDIINQEKQQPYFQDIEQFVSTARSNGKVIFPPEQDVFNAFNS
TPLAQVKVVILGQDPYHGANQAHGLSFSVLPGIKTPPSLANMYKELATDI
PGFQIPLHGYLQSWADQGVLLLNTVLTVEQSKAHSHAKIGWETFTDKIID
VLDQQSAGIVFVLWGAHAQKKGKTINTDKHHVLKSAHPSPLSAYRGFFGC
KHFSQVNQLLCDMNQSPIDWQPQRIQE
>PBPRA0455 S3275, putative topoisomerase IV, subunit B
MTEQSYNAGSIEVLNGLEPVRRRPGMYTDTARPNHLGQEVIDNSVDEALA
GHARKVEVILYADQSLEVIDDGRGMPVDIHPVEGVSGVELILCKLHAGGK
FSNDSYQFSGGLHGVGISVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSE
LEVIGTCGRRAKGTRVHFWPDARYFDNAKFSVTRLKSVLKAKAVLCPGLE
IVFTDKIADETIRWCYEDGLKDYLLEGVKGYTLLPEEPFIGVFTSQIEAA
DWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRN
LLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV
VKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPTLPG
KLADCSQQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWE
VSADQVLASQEVHNISIALGIDPDSDDLSGLRYGKICVLADADSDGLHIA
TLLCALFMKHFEALVRAGHVYIAMPPLYRIDLAKEVYYALDEAEKNGILD
RLSTKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDDEKTNE
MMDMLLNKKRAEDRRFWLQDKGDMADA
>PBPRA0568 SF2878, putative single-stranded-DNA-specific exonuclease RecJ
MIQSDYGLFSWFVPKIEIECDALSTHYPCRKLPIMIEVKRRPTADISGFS
AATPPLLQRIYASRGIASELELERGAKGLLSYEQLHGIKPAVQLLVTALA
ENRRIIIVGDFDADGATSSALSVLALRMLGCSNVDYLIPNRVEDGYGLSP
EVVDQAEARGAEVIMTVDNGVSSIAGVAAAKAKGMQVLVTDHHLQGKELP
IADAIVNPNLDVCTFPSKALCGVGVAFYIMLALRAELRNINWFEQQGIPV
PNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAGKCRPGIQALIE
VANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRMA
SELDGLNQTRKEIEHGMKEEALAICERISFNQQDMPYGLALFQRDWHQGV
IGILASRIKDLYHRPVIAFADAGEGEIKGSCRSIPGLHMRDVLDLIDTRN
PGMILKFGGHAMAAGLTIPEDQLTGFSKAFDDIVRSQLDEDALKGVFLTD
GELAANELNIETAEVLRNGGPWGQQFPEPSFDGRFRLLHQKLVGSKHLKM
MVEPINGGSVIDAIAFNVDLKSWPDASVQQVDLVYRLDVNEFRGNRSVQL
MIEHLVAK
>PBPRA0392 SF2983, hypothetical transposase
MNSPQTQKIESKMRDIQILHESLENQCPNIHKKRLKSLMDSVQALLSNDA
LTLTLLGRSLPSKAKTKHCIKRVDRLLGNNHLHHDRLDIYRWHCHQFCSV
NPQPIVLVDWADIREYERLMVLRASIAVEGRSVTLFEQTFTFKNYNSPRS
HQQFLDNFKAVLPSHVIPIIVTDAGFRNTWFRQVDDMDWCYLGRVRGDVN
VLIKNQWQHIKQLFIKANSKPKYVGFTQLAKRKPLQCHLHLYKKQTPKKR
KDRPKGREHFSAQAVHKKSALEPWLLATNLPTDIFSSRCIVRLYTKRMQI
EETFRDLKSPQYGFGLRQSRTHDPKRFDILLLIGLLAFMVYWWFGIIAEH
NGWHRHFQANSVKDRRVLSFVRLGKEVFRRLEYHINEPAIRWAQCTLILM
ARKSYRA
>PBPRA0366 SO2276, putative transposase and inactivated derivative [Vibrio vulnificus YJ016]
MKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQ
FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI
MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF
KDYDEILDKVCSAWNSFLSDTKRVTRMCARSWISLTS
>PBPRA0512 SO2276, putative transposase
MKTILKIPGHIGLESVDVWLQDEALFDQQNTTTRVWAKTGTRPRVIKQQQ
FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI
MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF
KDYDEIFDKVCSAWNSFLSDTKRVTRMCARSWISLTS
>PBPRA0368 SO2276, transposase and inactivated derivative [Vibrio vulnificus YJ016]
MKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQ
FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI
MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF
KDYDEILNKVCSAWNSFLSDTKRVTRMCARSWISLTS
>PBPRA0513 SO2874, putative transposase and inactivatedderivatives
MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTS
VNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGG
RLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQ
DDFKKI
>PBPRA0367 SO2874, putative transposase and inactivated derivative [Vibrio vulnificus YJ016]
MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTS
VNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGG
RLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQ
DDFKKI
>PBPRA0628 STM4564, hypothetical protein
MRLFVTMKMTSDTPNVEPHIFNRKSAIRPLVYRIKSVYMLIDSHCHFDFA
PFIDAPEHYLTLAKNAGVKRIVIPSVGERNWHVVEQLSRQFDELYYALGL
HPFFSHEHSEHALPLLKEQIQKVTQDSDTYRKKCVAIGECGLDFTIVNAD
KEQQIELLSEQVALANQFDLPVILHCRKAFPELMKVLRKNPPIAGGVYHA
FSGSYQQAKQLIDLGIKIGVGGTITYSRASKTRHTIASLPLVELILETDA
PDMPISGFQGEPNRPDRICNILRTLASFRVESEQVIEEVTTLTTAELFRI
SL
>PBPRA0562 STY2836, putative ATP-dependent RNA helicase SrmB
MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGT
GKTAAFLLPMIQHLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKN
THLKIFTITGGISYDDHAELLGKTQDIVVATPGRLMEYVESERFDCRAIE
CLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKGVREFSET
ILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIV
FVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILI
ATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVE
AHDQAMIERVSRYMEEEVPERFINGLRPASKKAKTIKKKKVKIDKKLKVA
KQKKAAKKHKKASENKPEA
>PBPRA0431 STY3389, putative DNA primase
MYFFFTIFNLINTLFLQLLSGISHCMSGKIPRSFIDDLITRHDIVDVVDA
RVKLKKQGKNFGACCPFHNEKTPSFSVSQEKQFYHCFGCGVHGNVLDFVM
EFDRLEFVEAIEELSSQLGLEVPREDGGKPSGPRAAEKRSLYDQMGLISQ
FYQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRD
PESQKALVTTGMLIENDSGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGD
GTPKYLNSPETPIFHKGRELYGLYEVLQAHREPAKLLVVEGYMDVVALAQ
FGVDYAVASLGTATTSDHLQTLFRQTSTVVCCYDGDRAGREAAWRAMEQA
LPFLTDGRQLKFMFLPDGEDPDSCIRAEGKDAFEERTTQAMPLTEFLFNT
LMLQVDTSSKEGMAKLSILAVPLIDKVPGGTLRLYLRELLGKKLGLPDEA
QLQQLISKQGIETKKIATPEIKRTPMREAIALLIQKPNFVNSLEFEMTDF
EGIDVPGLNLLLSIVDKCRTNPNITTGQLLEHWRGNKQEAMMARLAAWEL
PLSDDEDQTLNVFLDAMDRIIGQCVKQQIEKLQAKSNTVGLSVEEKQELQ
LLILNRPG
>PBPRA0566 VP0509, putative integrase/recombinase XerD
MIERFLDAMWMERGLSENTLMSYRNDLTKLRRWSDEKSYRLVTLSSDDLQ
RYQQWLFDADFKQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLP
KRLPKDLTEEQVGALLDAPDTNNPIELRDKAMLELLYATGLRVTELVSLT
MENTNLRQGVVRVLGKGGKERLVPMGENAIDWIEEFIDSGRPLLLGEKSS
DVLFPSKRARQMTRQTFWHRIKYYAVIAGIDTDTLSPHVMRHAFATHLLN
HGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV
>PBPRA0623 VV2687, Putative DNA polymerase III, psi subunit
MKQRDIQVLQEMGLTYWQVRKPEFFPNMQVPVIDLPESCKLLFITDNELN
EHDAWLFGRILGSMKLTPEQALSLPLEAVEQVAEHHLTWCWFAGCQGAHP
VGCQVLNSSSLQAMHSNPSSKKALWQQICSYDK
>PBPRA0515 YPO1874, hypothetical transposase
MSVKFTEAFKIQAVQKALNRSADSNIKDVADSLGVGFSTLTKWIRQAKNH
EFEMASEAELKMMSNEKRPQDWTLEERLEIIIQCAALDEKAINELCRESG
IYPHHIQQWKTDFVNGKKSSSVTPRSGEVKELKIENKALKKELNRKDKAL
AETAALLVLQKKVNAIWGADEDS