Gene list
Applied filters:
COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome 1
Number of genes found: 24
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View as list | ||||
# Photobacterium profundum, ss9 >PBPRA0557 putative endonuclease IV MVRMFLQLVGCLMHRKMQPKLVLTPLHYITKNQRQWVAKPLEQDVITAFK ARCQQYGFKSEAILPHDSYLINLGNPETEKLEKSRAAFIDEMQRCNQLGL TLLNFHPGSHLKKINESDCLRLIAESINMAHQEVPEVVAVIENTAGQGSN VGWRFEHLAEIIDQIEDKSRVGVCIDTCHTFAAGYDLRSEAATEVTFSEF DQVVGMSFLRGMHLNDSKGKLGSHLDRHHSLGEGEIGWDCFRYLMQASGF DNIPLVLETINPDIWQQEIMMLRSFVASE >PBPRA0409 putative RNA polymerase-associated protein HepA MPFTLGQRWISDTESDLGLGTVVAEDKRTVSIMFSACEESRLYARSDAPV TRVMFNVGDVVESHEGWSLEVKIVEENGGIFTYIGTRTDTEEENVKLREI FLSHQIRFNKPQDKLFAGQIDRMDRFALRYRALTNQYEQHKSPLRGLCGM RAGLIPHQLFIAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLAGRA ERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVESLADATNPFETAQ YVLCSLDFLRKSRRRFEQAQDADWDLLVVDEAHHLEWSEDKPSRQYQVVE ALAEATPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYDTFVEEERQYA PVAEAVTRLLSGEKIDDNARKTLVDLLSEQDIEPKLRLIESSDADDEHAQ TVRHELIDSLMDRHGTGRVLFRNTRAAIKGFPERHLNMYPLELPSQYKTA MRVSSMMSGSISAEQKAIKLLYPEDIYQEFEGESATWWNFDPRVNWLLEM LKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIDRDKAA AYFAQEDDGAQVLLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGRL DRIGQQRDIEIHVPHLEGTSQALLAHWYNEGLNSFEETCPTGRAVYEAVS DDLIALLACEKHEPEALENLIEKSAAMHHELKAKLDQGRDRLLEIHSNGG NAANDLVTQISSKDGDTNLIAFSLGLFDTIGLNQDDKGENAIVVTPSEHM MVASYPGLPYDGCTITFDRETALSREDLHFISWEHPMIQGGIDLLLSEGV GATAVSLLKNKALPAGTLLLEMVYVVDAQAPKSSGIGRFLPKTPIRILLD AKGNNLSNKVAFEGFNRQLSPVNRHLASKLVNSVQKEIHVLIAQAEQEVA KELVTVRESAQTEMENSLQAELTRLQALKAVNPNIRDDELELIESQIQDL TGYIGKAQIQLDSLRLIVVSHN >PBPRA0511 CBU1270, putative transposase MNSLTIGLDTAKSVFHAVEKNSRGRVLSKAKLTRAKLFTYFANKPPCTVA LEACGASHYWCRVISAYGHKAVMIAPQYVASHRKGNKNDFNDANAIADVA QRDDIRTVPYKSIEQQDIQLLHRVRERLVRQRTALGNQTRGLLSEYGIVL RQGLAHLRKELPFILEESNNELTELACRQFFLLHEELLVLDEKVKQADNE IQRVALSHPISQRLMTMSGVGPIISTILLVALGKGEHFRNGRHFSAWCGL VPKQHSTGDKARLLGISKRGNTYIRTQLINGARSALRNASNKNDQVSRWA ASLAERIGFNKACVALANKMARFAWAMVHNGQNYQLKP >PBPRA0576 ECS3688, putative DNA mismatch repair protein MutH MQPTPKSESELLLRAQDLAGSTLGELAEQAGIITPPDLKRDKGWIGQLLE WHLGAMAGSKPIPDFPELGIELKTIPIGYSGKPLETTFVCVAPLIGLHGL HWGNSHIRHKLARVLWVPVEGERDIPLADRHVGSPLLWSPSIEEEQQLRQ DWEELMDMIVLGRVEHITARHGEVLQLRPKAANSRALTEAYGANGQPIKT LPRGFYLKTHFTAAILARHFIL >PBPRA0577 HD0172, putative MutT/nudix family protein MIDGDGYRPNVGIVICNSHGQVFWARRYGQHSWQFPQGGIDEGETPEQAM YRELYEEVGLTKKDVRILASSRHWLRYKLPKRLVRWDSKPVCIGQKQKWF LLSLECDESRVNMQRGSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRALKE FAAIAMPFKERKERKLKRYKSKRG >PBPRA0510 MT3534, Hypothetical transposase MRNPSGLENSHSQLSRIYGSKRVSLIFIIMPCNARGSIYGITYLPTTVKG LFFYLYMVMDVFSRKVVGWQVHDNESSALAADLMTDICKREDIKRGQVVL HSDNGSPMKGATMLATLQELGIMPSLSRPSVSNDNPYSESLFRTLKYRPE YPEKGKANSKEVEAA >PBPRA0456 PARC, putative DNA topoisomerase IV MTDVSMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRII YAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYR YPLVDGQGNWGAPDDPKSFAAMRYTESRLSRFSEVLLGELGQGTADWVPN FDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPPHNAREVANAAVHLL DNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRGSIRMRAIWH KENGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTR IVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEI ITEWLVFRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNE ENPKAELMSRFDLSVIQADAILEIKLRQLAKLEEIKIRSEQDELAKERDY LDKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDLIP SEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNYLAHARGKSNLPAILI GSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDEQMWLM GSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILV ITNEGRMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQG EQVTIHAGKRKMGLKASDLDNFRGERGRRGTMLPRGLQNVTRLEITSTAQ ASDSPE >PBPRA0451 PLU3953, Putative MutT/nudix family protein MTQKVSLSENQPFYTKDDVEILSSEKVYNGFFSMVKYRLRHKLFNGSWSK PLERELFERGHAAALLPYDPIEDKVVILEQFRIGAMVAEFTPWQLEIVAG IIEPGESAHDVACREAVEEAGLTVTDLEKVTRYLSSSGGCSETLDVFVGR VDSTQAQGIHGLIDEGEDIRVHVITRQEAYQWVESGKIENAASIIALQWL QLNYLRLQSK >PBPRA0514 RB787, hypothetical protein MTLFEQHQLPCILESRLSKRYQTLIMEHMTVNSSNAPGVKSLRHHTQSWA STQATWRFYHNEDVTFPMLSGPMLGLARSGVKESQSRYVLMAHDWCHINF AKHHSKLDKTKMSHALDVGYELQASLLVDANTGAPIAPAGLNLLTSNGIY QCRSQELQPKQSHLDSLFDSIHWQEQLDLDKPLVHVVDREADSAKDLRRL GSVHWLTRTKKGSTFRHEGQFKTAEIISRTISPDLKGVISLRGKEGYLFV GETTVELHRKSEKLASAAPTCRFVMSLVTDDEGKELARWYLLSNVLDVDA TEIATWYCHRWNIESWFKLLKSDGHQLEKWQQTTAESILKRLITASVATT LIFKLYSDSSDEANEFKGFLVKLSGRLTKRTKPVTQPSLLAGLWVFLQMC EVLDTYTMDEINAMRQIASSFFAQSV >PBPRA0558 S2815, putative uracil-DNA-glycosylase MSHTNTWQDIINQEKQQPYFQDIEQFVSTARSNGKVIFPPEQDVFNAFNS TPLAQVKVVILGQDPYHGANQAHGLSFSVLPGIKTPPSLANMYKELATDI PGFQIPLHGYLQSWADQGVLLLNTVLTVEQSKAHSHAKIGWETFTDKIID VLDQQSAGIVFVLWGAHAQKKGKTINTDKHHVLKSAHPSPLSAYRGFFGC KHFSQVNQLLCDMNQSPIDWQPQRIQE >PBPRA0455 S3275, putative topoisomerase IV, subunit B MTEQSYNAGSIEVLNGLEPVRRRPGMYTDTARPNHLGQEVIDNSVDEALA GHARKVEVILYADQSLEVIDDGRGMPVDIHPVEGVSGVELILCKLHAGGK FSNDSYQFSGGLHGVGISVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSE LEVIGTCGRRAKGTRVHFWPDARYFDNAKFSVTRLKSVLKAKAVLCPGLE IVFTDKIADETIRWCYEDGLKDYLLEGVKGYTLLPEEPFIGVFTSQIEAA DWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRN LLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV VKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPTLPG KLADCSQQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWE VSADQVLASQEVHNISIALGIDPDSDDLSGLRYGKICVLADADSDGLHIA TLLCALFMKHFEALVRAGHVYIAMPPLYRIDLAKEVYYALDEAEKNGILD RLSTKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDDEKTNE MMDMLLNKKRAEDRRFWLQDKGDMADA >PBPRA0568 SF2878, putative single-stranded-DNA-specific exonuclease RecJ MIQSDYGLFSWFVPKIEIECDALSTHYPCRKLPIMIEVKRRPTADISGFS AATPPLLQRIYASRGIASELELERGAKGLLSYEQLHGIKPAVQLLVTALA ENRRIIIVGDFDADGATSSALSVLALRMLGCSNVDYLIPNRVEDGYGLSP EVVDQAEARGAEVIMTVDNGVSSIAGVAAAKAKGMQVLVTDHHLQGKELP IADAIVNPNLDVCTFPSKALCGVGVAFYIMLALRAELRNINWFEQQGIPV PNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAGKCRPGIQALIE VANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRMA SELDGLNQTRKEIEHGMKEEALAICERISFNQQDMPYGLALFQRDWHQGV IGILASRIKDLYHRPVIAFADAGEGEIKGSCRSIPGLHMRDVLDLIDTRN PGMILKFGGHAMAAGLTIPEDQLTGFSKAFDDIVRSQLDEDALKGVFLTD GELAANELNIETAEVLRNGGPWGQQFPEPSFDGRFRLLHQKLVGSKHLKM MVEPINGGSVIDAIAFNVDLKSWPDASVQQVDLVYRLDVNEFRGNRSVQL MIEHLVAK >PBPRA0392 SF2983, hypothetical transposase MNSPQTQKIESKMRDIQILHESLENQCPNIHKKRLKSLMDSVQALLSNDA LTLTLLGRSLPSKAKTKHCIKRVDRLLGNNHLHHDRLDIYRWHCHQFCSV NPQPIVLVDWADIREYERLMVLRASIAVEGRSVTLFEQTFTFKNYNSPRS HQQFLDNFKAVLPSHVIPIIVTDAGFRNTWFRQVDDMDWCYLGRVRGDVN VLIKNQWQHIKQLFIKANSKPKYVGFTQLAKRKPLQCHLHLYKKQTPKKR KDRPKGREHFSAQAVHKKSALEPWLLATNLPTDIFSSRCIVRLYTKRMQI EETFRDLKSPQYGFGLRQSRTHDPKRFDILLLIGLLAFMVYWWFGIIAEH NGWHRHFQANSVKDRRVLSFVRLGKEVFRRLEYHINEPAIRWAQCTLILM ARKSYRA >PBPRA0366 SO2276, putative transposase and inactivated derivative [Vibrio vulnificus YJ016] MKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQ FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF KDYDEILDKVCSAWNSFLSDTKRVTRMCARSWISLTS >PBPRA0368 SO2276, transposase and inactivated derivative [Vibrio vulnificus YJ016] MKTILKIPGHIGLESVDVWFQDEARFGQQNTTTRVWAKTGTRPRVIKQQQ FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF KDYDEILNKVCSAWNSFLSDTKRVTRMCARSWISLTS >PBPRA0512 SO2276, putative transposase MKTILKIPGHIGLESVDVWLQDEALFDQQNTTTRVWAKTGTRPRVIKQQQ FEYAYLFGSVCPSRGIGEAIVVPWSNKDAMKLHLQQVSSATEKGRHAVVI MDGAGWHTEDTAHSFHNISIIKLPPYSPELNSIEQVWSWMRQHHLANQAF KDYDEIFDKVCSAWNSFLSDTKRVTRMCARSWISLTS >PBPRA0513 SO2874, putative transposase and inactivatedderivatives MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTS VNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGG RLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQ DDFKKI >PBPRA0367 SO2874, putative transposase and inactivated derivative [Vibrio vulnificus YJ016] MDSLNNIDFKSLASKQTSIQMKMRFLALAHFQDGHSRTQIAKYLKVSRTS VNKWIQVFLEEGLDGLKEKPRTGRPSFLSHQERQLLAKYIEENAAKPDGG RLTGHDIHNYITQTFGKAYHPDYIYILLKKMGFSWITSRSKHPKQCDKIQ DDFKKI >PBPRA0628 STM4564, hypothetical protein MRLFVTMKMTSDTPNVEPHIFNRKSAIRPLVYRIKSVYMLIDSHCHFDFA PFIDAPEHYLTLAKNAGVKRIVIPSVGERNWHVVEQLSRQFDELYYALGL HPFFSHEHSEHALPLLKEQIQKVTQDSDTYRKKCVAIGECGLDFTIVNAD KEQQIELLSEQVALANQFDLPVILHCRKAFPELMKVLRKNPPIAGGVYHA FSGSYQQAKQLIDLGIKIGVGGTITYSRASKTRHTIASLPLVELILETDA PDMPISGFQGEPNRPDRICNILRTLASFRVESEQVIEEVTTLTTAELFRI SL >PBPRA0562 STY2836, putative ATP-dependent RNA helicase SrmB MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGT GKTAAFLLPMIQHLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKN THLKIFTITGGISYDDHAELLGKTQDIVVATPGRLMEYVESERFDCRAIE CLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKGVREFSET ILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIV FVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILI ATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVE AHDQAMIERVSRYMEEEVPERFINGLRPASKKAKTIKKKKVKIDKKLKVA KQKKAAKKHKKASENKPEA >PBPRA0431 STY3389, putative DNA primase MYFFFTIFNLINTLFLQLLSGISHCMSGKIPRSFIDDLITRHDIVDVVDA RVKLKKQGKNFGACCPFHNEKTPSFSVSQEKQFYHCFGCGVHGNVLDFVM EFDRLEFVEAIEELSSQLGLEVPREDGGKPSGPRAAEKRSLYDQMGLISQ FYQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRD PESQKALVTTGMLIENDSGRRYDRFRGRVMFPIHDRRGRVIGFGGRVLGD GTPKYLNSPETPIFHKGRELYGLYEVLQAHREPAKLLVVEGYMDVVALAQ FGVDYAVASLGTATTSDHLQTLFRQTSTVVCCYDGDRAGREAAWRAMEQA LPFLTDGRQLKFMFLPDGEDPDSCIRAEGKDAFEERTTQAMPLTEFLFNT LMLQVDTSSKEGMAKLSILAVPLIDKVPGGTLRLYLRELLGKKLGLPDEA QLQQLISKQGIETKKIATPEIKRTPMREAIALLIQKPNFVNSLEFEMTDF EGIDVPGLNLLLSIVDKCRTNPNITTGQLLEHWRGNKQEAMMARLAAWEL PLSDDEDQTLNVFLDAMDRIIGQCVKQQIEKLQAKSNTVGLSVEEKQELQ LLILNRPG >PBPRA0566 VP0509, putative integrase/recombinase XerD MIERFLDAMWMERGLSENTLMSYRNDLTKLRRWSDEKSYRLVTLSSDDLQ RYQQWLFDADFKQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLP KRLPKDLTEEQVGALLDAPDTNNPIELRDKAMLELLYATGLRVTELVSLT MENTNLRQGVVRVLGKGGKERLVPMGENAIDWIEEFIDSGRPLLLGEKSS DVLFPSKRARQMTRQTFWHRIKYYAVIAGIDTDTLSPHVMRHAFATHLLN HGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV >PBPRA0623 VV2687, Putative DNA polymerase III, psi subunit MKQRDIQVLQEMGLTYWQVRKPEFFPNMQVPVIDLPESCKLLFITDNELN EHDAWLFGRILGSMKLTPEQALSLPLEAVEQVAEHHLTWCWFAGCQGAHP VGCQVLNSSSLQAMHSNPSSKKALWQQICSYDK >PBPRA0515 YPO1874, hypothetical transposase MSVKFTEAFKIQAVQKALNRSADSNIKDVADSLGVGFSTLTKWIRQAKNH EFEMASEAELKMMSNEKRPQDWTLEERLEIIIQCAALDEKAINELCRESG IYPHHIQQWKTDFVNGKKSSSVTPRSGEVKELKIENKALKKELNRKDKAL AETAALLVLQKKVNAIWGADEDS