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# Hahella chejuensis KCTC 2396, KCTC 2396

>HCH_00588 Integrase
METAELLLPNEPEFICQLKQAIESQGFSPRTEHSYLHWIYRFISFNHNRS
PKELGEKDVRRFLRYVATTLSASPARCKQALKALRFMYQDVLKKPLPDLD
DMQPA
>HCH_03270 Transposase and inactivated derivatives
MRYRRNYVAGGTYFFTVNLLERNQTLLVDHVHALRESVRWVKARRPFDID
AWVVLPDHLHAIWTLPEDDVDYSSRWREIKKRFSKSLIINEPRPEPRKMK
GERGIWQRRFWEHTIQNEQDYQRHFDYIHINPLKHGWVSRVRDWPFSSFH
RAVSEGIYSLDWCGGDEASGCFGEFE
>HCH_04166 hypothetical protein
MRLSTSSSNDRLPTGRWGITWLCALFVAATAISVFEMGLRYSGFQPTQDD
SVEFWIEQRDRINDSSERPVVLLGSSRIQLGVDTAYLRDELVRPVIQLAI
DGTSFMPLLEDLSEDESFVGDVVVSVVESHVLPSEENQRASEWVDAYYKY
KNKGIEPYKYFDQLIELQLRSRLSSRFMGVSPIDMTDKWNPALTSTPKVY
LTTNTDRSRNADYSLLDQVQTYIGRVLRHYSLTFPQGVNNFEAFDRYCLD
KLSERSKADLSLFEEGVQKMDRHIKEIEERGGRVYLVRFPTDKLIWAFDD
HVWPKGEYWDTYIGSRYNSVHFRDYPEMARFSLPDGSHLDMRDKKPFTKA
LLEALSDKGFEIE
>HCH_02488 BamHI-like site-specific methyltransferase
MSYSDQFFNAIGISGERGSVERFAKLSGVPAQRLKFYNHNNVLPSGSDLD
RVIKGAGITELLLKLKMGRVDKSISDAIQFYADEISELLARYNPEAESPK
TECKLEFETSLGKLYRGDCIRFLKSIDNDSIDLVFADPPFNLSKLYPSEI
DDRLKTENYLHWCQEWLFECARVIKPGGALFLWNLPKWNSSLSSYIESFL
TFRNWIGVDIKYSLPISNRLYPSHYSLLYFIKGERPNTFNPDRLPMQVCP
KCYGDLKDYGGYKDKMNPAGVNMSDIWLDIPPVRHAKYKRRDGSNELSLK
LLDRIIQMATKEGDVVLDPFGGAGTTYMAAELKGRRWLGCEIGPIDVIVE
RFNLIEKEREIIDSYRKNLNSLFPENIKHNREKLGLWTCETVRNPA
>HCH_02163 Bacterial nucleoid DNA-binding protein
MNKSELIDAVAASADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTF
SVKERAARTGRNPQTGATIKIDAAKVPSFKAGKALKDAVN
>HCH_05719 Site-specific DNA methylase
MPTFVDLFCGGGFGARGAVRGGGKPLLGIDAWDLAVQTYQANFPTAEVIH
SKIEDTDPILLAKKFKPDVLLTSPECTSHSIARGARPGNESSKETAIGII
PWIEAMLPRWVIVENVNRMKKWGRHNELISSIKSLNYEVSDLLLNSATFG
SGQARKRMFLICNLEGISLSEADLLTGMTPQYKCAADIIDWNAEYKSAPL
HKPSRAKATLERAERAIQALGRNVPFIIVYYGSDYAGGWQSLAAPLRTIT
TLDRFGLVTWHDDVPYLRMLQPDELKHAMGAGKEHSLPVGNRREKVKLCG
NGVCAEVMEAIFRTIARTDAKKSEQAA
>HCH_03181 Serine/threonine protein kinase
MRTVAGPGVDERGQIYMRNELMLSFGQWTDKGRKEINQDFHGGYVPKGAQ
LTVKGAAFAMADGVSSSSVSQIASETAVKSFLEDYFCTSDAWTVQHSAQR
VLRATNSWLYAEGQRSVYRYDKEKGYVCTFSAVIFKSDVAHILHVGDTRV
YRLRDGALEQLTHDHRLWVSQSQSCLSRALGFREHIEIDYQPLRLRLGDI
FIMATDGVYEYCDAHTLIEALQEPDDLDAIAKRMVDHALEQGGKDNLTLQ
IIRVEALPGDVDSLFQQQVETIPLPPILQAGAEFDGYQILRCLQTSRRSH
VYLALDIVSKTKVIIKTPATDQQGDPAYLERLLMEEWIARRINSLHVAKA
AQFERPRAYLYTVSEYIEGRTLSQWLRDHPRPDLETVRGIVEQAARGLMA
FHRMDMLHQDLKPDNLMIDASGIVKIIDFGSTRVGGVAENDQGVRQPNLL
GAALYAAPEYFLGEVGSPGSDLYSLGVLTYHMLSGGFPYGADVAKTRTAG
AQKRLTYKPVLSEERDIPAWIDATLKRAVHPNPHKRYTELSEFLHDLRHP
NPAYLNQTRPPILERNPVMFWQGVSLVLMAVLIWQVMS
>HCH_01087 hypothetical protein
MNNNKYNLGPVHWSRSALIVAAVAATLQGCEKLETKPKDPTVPSPDFVLS
GLQYASEISLQRDQGRVMRSIISGNSRAGLGDLLDKSGNGGYAKINTPKY
KFDDAGFMNASGSRYGGISAAGDLFFLTDVAAISTTFYAGVKVDETATAE
NPDGDIVYQKPDLTQNDYLCIEQTYFPSGADNKLTVQIHKATLNADGNGV
LQRIGGTGVGAGSESRAITYSFDDEAILNWSDPPLDEAFDEVVQNAGYTL
DCPVDNNGDPVYDPCRWSVRTLGGASPDGRVFHFSRVAWKEQVPVNPPED
DSPGNAEVGGWRPVASSAICLRTATNMANNVLQGEYWLGVVIEDQDIPQA
TFSRLTLDGAGAGVDSQIRASSGIATRDLSVSYNVESNGELSYSGRMGIV
SGDGELLVFDASDPANGKIGFGVAMKNQKPAGQEE
>HCH_05614 Transposase and inactivated derivatives
MKYVNHLKPAEIKTLTDGFRYSPSSRFRIRCHAILLSNKGYKIDKIADII
DFHRNTISIWIEQWESMGICGLISDASPGRPPIYTEQEQEKVCKWIDEQP
QQLRDVQVRLEKETGKSASLETVKRNLKKIKV
>HCH_07052 Transposase and inactivated derivatives
MAALAEQVQKVTGELADQHGIRLEVVKHTEAKKGFILLLRRWMVERSFG
>HCH_03001 Replicative DNA helicase
MKLTAPVHVLKGKAKALKRSQSLTMTEALDQIARAEGFSSWSLLQPKVKA
FTPKTTEELLDYLHPGDLLLIGARPGLGKTTMALQLLLQAIKQGRQCFFF
SLEYSKKALIEKLTALDQQFELNQPLLALDISDEISADYIINQTKERVTE
GSLIAVDYLQLLDQNRNKPPLQQQIEDLKSYARAKKCILVFISQIDRRFD
EGERAIPTIKDVRLPNPLDMNLFNKSVFVKSGQIYI
>HCH_04002 Serine/threonine protein kinase
MPLIVHHSSITAAGVKDLNEDAVAVCAPSQERRLLNKGVVAALADGVSSA
EAGKEASATAVDLFIADYLKTPDTWAVSHAGQKILSSLNLRLYRKSQEFV
HEAKGYLCTFSALILKSRTAHIFHVGDSRIYLLRHGELTRLTRDHIVSLG
GGRKMLARAVGMDNNLPIDYSKTPLEVGDILILTSDGVHDFLDDETIKHI
VDHAPTAQEAVDELLQQSLQAGSNDNLSAIVLAVDDLPETTLEDYSNQLT
RLPFPPELEPGMALDGLVVEEEIFASSRSQLYLVRDQDSGERWVMKTPSR
NYLGDVSYIDRFIQEEWIGKRIDNPHVVRIIEQPQARTCLYYLMEHVEGV
TLQQWIKDHPFPKPKTAFALIAQVADGLSALHSQDTIHQDLKPANIIVSP
DNRATIIDFGSVYVAGVAEVFRPLEHIAALGTASYSDPLYLLGQNTGARG
DLYALATIAYEMFTGELPYGDQINECRSRFDYDRLRYRSAMQFNPVIPLW
FDRALQKGVAFDLDQRYQTMDALLQDLQNPNPAFLQDNPLEMEDRSPVMF
WQMLSGFWALILMLVLILFSCQGPS
>HCH_02303 3-methyladenine DNA glycosylase
MKFADRLAAVRDRFGSDEAMRAALSVAADAEELSQRSDAYYLSNISRRIF
RAGLKHSFVDSRWPAFEEAFFGFEPEKAELLSESDLDERMKDARLIRHWG
KMCSIPYNAAMVREVSRVHGGFGRFLAQWPETDIVGLWRYLAKQGKQMGG
QSGARFLRMVGKDTFLLTDDVVAALKAMGVVEKIPTSQKQLQHTQAFFNE
LAHTYSLQLCQLSQILAYSVG
>HCH_06861 hypothetical protein
MTKITNATSRRSAVLITGGFALTLMAAVFWHERHSSDAATLQAPAAPSPA
MTATLPQSTPSVQATKPSQDALTQRNLEEEELIGYLQRTFGTYIQHPKVQ
VQVLEKLMRFVQSRYPENWREQLAILVSAAFPELQDRLMQTFAALETYTE
WMNSERYALMSLSDAEKRTRLWQKREALFGEQAYEIWKDQWQAEQFQDRL
ANLELSSAPVEEKITQYKQQILASFPDKAERLIANKKQELTDRFLSLPSV
QEQLRDMPPAQRYAQLRHLRKELGMDEAALTRWEDLDKTRDERRANGDAY
MAQRQALTGGDAQNAASIQALQRKYFGNEADIIAAEEASGYFRFENSQQY
GIN
>HCH_05756 Superfamily II DNA and RNA helicase
MSSTDSATALSKDFASLGLSDSLLSALKDVGYEQPSPIQEQSIPLLLQGE
SILGVAQTGTGKTAAFALPLLERLDPKIQSPQIIVLAPTRELAIQVAEAF
KSYSRYLPDFTVLPIYGGQDMRGQLRSLKRGVQVIVGTPGRVLDHLQRKS
LDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAI
KRVAEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVEN
FEGMIIFVRTKSATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKG
RLDIVVATDVAARGLDVERIGLVLNYDIPYDTEAYVHRIGRTGRAGREGK
AILFAAPKERRLLRAIESATKQPLTPYEAPSAEKISEQRIQQFQENLHRT
LDGQDLDSMKKVVLDFCKENELALEDVAAALAFRLQVEQPLFPILKDLPK
LDKDFRGRDRDRDGRGRNPRDRDRRGREGREGRDSRRDDGIPRERYRIEV
GRSHDVSPGDIVGAIANEANIESKYIGHIAIYDNFSTVELPEGMPKEVLQ
HLQKVRIRQQLINMKPDAGKPERKPRSGSGRGGPRPSSKRPRS
>HCH_05439 predicted DNA alkylation repair enzyme
MQPDATAIRARLLSLGNEAIAAHSLRFFKTEPGEYGAGDRFLGIRMPTLR
KLASEFRGVSLSETLLSLKSPYHEERMLALLLLVTLYQKGGPEQKQAIYE
AYLANTRLINNWDLVDGSARFIVGPYLEDKDRSQLYTLAASPDLWERRIA
VLATYHYITRHDFTDILQLAEILLQDSEDLIQKAVGWMLREVGNRDKRTE
EDFLLKHYRAMPRTMLRYAIEKFPKEERKQYLQGMR
>HCH_01912 Uracil-DNA glycosylase
MIRFADNETIFTPETMTQRRIDTTDSDNELSRLLQDVRACRLCEQHLEPN
PIVKAGSTARLMIIGQAPGTRVHATGIPWNDPSGDRLRAWLGLDKETFYD
TRRIAIMPMGFCYPGKGRSGDLPPRKECYEHWHHKILARLPRLEVFLLVG
LYAQQAYLPNAYKSLSENVKHWRDWYPRLIPLPHPSPRNTLWLKQRPWFE
EEVIPQVRNHVHDLLINQADK
>HCH_00405 Integrase
MAVKKVANGWKVDIRPEGVYGKRIRKTFPTKRQAEQWQIDQKAKANAGEW
SPPNKDRRKLSDLVNTWYDLHGHTLKDCDNRLRSLTALVNRLGDPIAKNF
TGEDFLEYRRFRLTQKHEHRDKLVEPNTVNHEHAYLFAVFSKLIKIKNWK
LDNPLKGLSKLTIDEPALVYLEQDEIRALLASLKESKNPNVLVISKICLS
TGARWGEAESLQAQQVKQGKIHFIKTKNSKSRAVPISDELSKEIIAGRPR
FGRLFPGTSKQAFRLAVERSGINLPDGQMTHVLRHTFASHYMINDGNILK
LKDILGHKTLSMTIRYAKLAPKHLADAVTRNPLATL
>HCH_01020 DNA repair protein
MPISDWPKADRPREKLIAHGSSKLSETELLAIFFRTGTRGRSAVDLARDT
INHFGGLRPLLDASFEEFRQIPGLGEAKFTQLQAATELAKRYLQEKMQRS
HNLTSPELTREYLSAHLRHYPYEVFAALFLDNQHRVIAYEELFRGTIDSA
SVHPREVVRRVLKHNAAAIIFAHNHPSGVAEPSLSDKEITETLRKALRLV
DVRVLDHMIVGDGEVVSLAERGWI
>HCH_06687 predicted endonuclease containing a URI domain
MSFFTYILKCADNSYYTGHTDNLEGRIYQHNEGVFPDCYTFNRRPLTLVY
SQMFATREEALASERQIKGWSRAKKEALINGDWEAVVRLSKSRGR
>HCH_02053 conserved hypothetical protein
MLRFIMILLIFIMAGCSTDNGDGSRFEALMTASKQEREKASQDLQKISKS
FSDGKASRENISEQVLTQLEVKVRNGEDASAERQQIQELAEQIKRDSDAV
LSAVDNLFNESVKALALASAAYDLCGIEGERANLVAIVRKMDNHPDRKYN
AEDAYWKFKWEFQNELKEGNVETECEYFLSQKEELEASFELAFQAMNYSK
NLHPQEAGSVSP
>HCH_06653 Site-specific DNA methylase
MSDKTFIEFFAGIGLMHAGLVGSGWRCAYANDIDPKKYQMYRDRFGDAGY
YHIGDVWETDEVVERIEQAPLLATASFPCVDLSLAGKRSGLSGDESGTFY
GFAAALRGLKEKGRQPKVVLIENVMGFLTANKGRDFQAACQELADLGYWI
DAFSVDAKHFVPQSRPRIFILGCLQEALPDGHSLKPDDAVGVADSEWRRR
IDAQDGIRPKSVRAALLGMNLPTGLFCQDVKDLPPVKTNLRDVIDVDAGE
WWEPEQVKKHWNEMSAGHQNVLSELKRQDDFSVGGMYRRVRNGESRTEIR
TDGIAGCLRTPRGGSSRQMVFVAGKGQLKMRWMSPVEYARLQGASDFPIS
VGVNQALFGFGDAVCVPAIEWIARHCLEPIYHTLALRETRKESIQADLFA
STPA
>HCH_06339 Exonuclease III
MRVVTISVNGLKRAVGEGFFEWMARQDADVVCVQDHRMRVYELDEDKYRP
EGYEPYFLDAEKLEDGGVGIYTRQIPKAIMMGFSYAPADMNGAFIQADFD
AVSIASLMVPCALMDDEKQQAKEEYLEAFGNHLQKTLRKRRQFIFCGNFQ
TAHLVTDANPRYHRLEVSGFLPQERAWFDQVFDEMQYVDAFRKINREKNQ
YTWWPESAEGWRKHSGWRVDYQIATQGLRSAIKRAWIDTETRFSDHAPLI
VDYDVDF
>HCH_06727 group II intron-encoding maturase
MKTEAIRMGQGIQGDVGRYPAETEARVEADTGAHSWTNAEPNTLMEQVLE
RPNLMHAYQRVMSNKGAAGVDQMPVAALKGHLQQHWPTLRERLLAGDYHP
QPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHSYG
FRPGRSAHQAVRAMQRHINDGHRWVVDLDLEQFFDRVNHDVLMGLLARRI
ADRRMLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDR
ELERRGHRFCRYADDCNIYVRSERAGHRVMTSITHYLKMHLRLKVNAEKS
AVDRPWRRSYLGYSVSWRKQVRLRIAPKSLKRYQAKLRQLLRQSRGRPLQ
TTIARLNPALRGWANYYRLTTSKRPVEGLDGWVRRRLRLLLWRQWKRTYT
RARNLMRLGLSEQRAWSSASNGRGPWWNSGASHMNAALPKRMFDRLSLVS
LLDTMNRLQRQS
>HCH_05682 DNA modification methylase
METLIPYCRNARTHSEEQVAQIAASIAEFGWTNPILVDGENGVVAGHGRL
LAARKLGLLEVPVIELAHLSPTQKRAYILADNQLALKAGWDEQLLRVELE
ALQEDGFDLDLTGFDADDLAALLEAEETEVEGQTDDDSVPEEEEAVISQS
GDVWLCGEHRVLCGDATLPDAYAALFSDGKLADMVFTDPPYNVNYANSAK
DKLRGKNRAILNDNLGDGFYDFLLAALSPTLAHCRGAIYIAMSSSELDTL
QAAFREAGGKWSTFIIWAKNTFTLGRSDYQRQYEPILYGWPEGARRHWCG
DRDQGDVWQIKKPAKNDLHPTMKPVELVERAIRNSSRPGDRVLDPFGGSG
TTLIAAEKSGRVARLIELDPKYVDVIVRRWQEWTGESAIRESDGSKYGEN
LKLDG
>HCH_04618 predicted methylated DNA-protein cysteine methyltransferase
MSELSQQEKLQAIWFVVSQIPPGKVATYGQVAILAGLPGLSRYVGYAMKQ
LPEGSSIPWHRVINSQGKISFPPKSKAFFRQQSVLTHEGIEVHNGRIALK
RFQWAP
>HCH_00601 Transposase and inactivated derivatives
MKDLQSWEDAGEIELYYFDESGFSQRSNLPYGWSPVGKPTQMKSYPHNKR
LNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPLKPAVVLLDN
ASIHRSAEFRRHRLDWIDKGIWPIYLPKYSPELNLIEILWRKVKYSWLPL
DSYETFDRLKESVNDILSKFGQEYKINFV
>HCH_03776 hypothetical protein
MVALFREQYVAVPQELGLAEGVLFGDAASQGVVVVAGFRRAQALSQLSTH
FEGLLDAQVEL
>HCH_00571 N6-adenine-specific methylase
MRHKGKSAPELGQLRIIGGSHRGRKLTFPALDGVRPTPDRVRETLFNWLM
PIFPGPRCLDVYCGSGALGLEALSRGAADVTFIDQSPVIASHLKSQIQLL
RADNASVVNADALNWLRAASPDKPWEVVFLDPPFRKEFLAPALQILAERK
LLAANAYVYVEAEVELNPLPLPPGWAISRHKTAGQVQYALCLVRQPD
>HCH_03287 Transposase and inactivated derivatives
MPRLMLSDELWSKLKEIMLQERIYNKPTLRMMVEGMLYRMRTGCPWRDLP
GQFGDWNSVFKKFNSWSAQGKWLRIFRSLVREPDLEWGFIDGSYVKAHQH
SAGACTEEPQAIGKSRAGNTTKVHLAVDAYGLPVEFEITGGEVNDCTAAE
LIEKLPSSEAIVGDKGYDSERVREQIKRKGARP
>HCH_02654 Rad3-related DNA helicase
MVSEGIKEQIQSAYRKYIAARNIKPRSGQRHMIAEIARYLSSIELDGEFR
RSNDATTCVVEAGTGTGKTLAYLMASIPFAAALRKKIVISTATVTLQQQV
VQRELPLLAEHTDLEFKVALAKGRGRYICLHKLDSYLAGQEQGILLLDGP
QESSGPDVDAEAYQRFMNWMVDKGWSGDWDSAPEPIEESLWSTVTTDHRQ
CLNKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADLALGGGFVLPPPE
ETIYIFDEAHHMADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFAYD
EQITNRVSPMAALSQEVHHHLDAVARFLNETIEWEENDERATFQYRYPMG
VIPEELRKLSAAMADKVGEMTKELEAVLKRLRELAEKEQPGGAQRQAYDQ
AVMALSVYQSQVENLEDVWRIMGEEVQEGHTPTARWLTTWAKETDSDVVV
HVSPTNAAHLLRKRLWSRAFGCVLTSATLSVAGRFDRLAGQVGLPDGSTF
AIHHSPFDFNNNCTLELCDLGRDPQDSESYLEMLSQALLRIIDEKQATLV
LFSARKHMQFAARALADTKLGSLIITQDSGNKGQLIDTHRSRVDENKGSV
LFGLASFAEGLDLPGDYLKHVIIAKLPFAVPDDPVEATYAEWLKSKGGNP
FNQVVLPDAITRLLQACGRLLRSERDSGKISIMDRRLWTRSYGRIILNAL
PPYKVVSADIRQPTASES
>HCH_00425 Alkylated DNA repair protein
MPPDLILKSAFVANPDALFGELKNNVCWDERIKARKTASYGVSYDYSGMT
YPQTEMPESLASICRDIETALGFRPNNCLLNYYPDGDSSMGYHSDSAEEL
APGTGVAIISLGAERRISYRSKADKAHVVTYMLEHGALLYMDKGVQDRWM
HAIPKMPGVGERISLTFRLILK
>HCH_00124 Endonuclease I
MNKNLWMILLGAMGQMICPSSHGELLISEVLYDAPDNDASQEWVEIFNPS
CQSVSLADYSLQDNGGAYPLSGVIGAGSYVSVAKNTAGFQGLFGANPTLS
GMSLSLGNSGDFVKLMKGTQEVDMVAWEGAVSQWYLNAQNVSLMRFASDD
TDTQQDWIVAATAGAPGVGDLDAGCGGSDQGPGDDSPTTGALVNGVAKTG
LAGAAGSQTFYVGEVPAGAVSLKFEQYDGKGDADLFVRFGAAPTSSVYDC
RPYAGGNNETCEFKGPAAGDYHVMVSGYSDYSGLSLRMSYSVDSGGDDGY
DDVDGYYSSAMGKTGAALKSALNGILRDHAAMSYSQVWDALKYTDEDPDD
SGNVMLLYSGRSIDKDDNAGQSNSGDAWNREHVWPKSHGFSSSSQHAHTD
IHHLRPADVSINGDRGNKDFDLGGSPISEAPENKTDADSFEPRNAVKGDV
ARMIFYMDVRYEGGDDSGTPNLQLVNYSGTGTNDPKLGKLCQLLQWHNQD
PVDAWEKRRNQRIYERQGNRNPFIDNPGWAQEIYAASCQ
>HCH_03267 hypothetical protein
MIASIAEIKQHRTNRQARQVKSLEIALSDLRERRSQSAHAFTDFQQWRRR
ESDRLFAELAGKPASLQEVDDYNSRVTYFKVQSNDLASQLKQIQAQETAA
EQKLQAALDQLKAAQRAQEKFAILAEDFQGALQQNRIRLEEQQAEEMAAD
SLRCPAGATAGFSLGMEASR
>HCH_03218 Superfamily I DNA and RNA helicase and helicase subunit
MSGQDASPLKIHATIVEKINFACHQSAYAVLRELKIENSSADDLHDLVVT
LEAAPAFLRTKTWTIDSLSADGQIVIKDRDLELDGGFLFGLAESMRGSLN
IRVNRADELLAEQAVDVELLASNEWGGVSFMPELLAAFCTPNDPAVDRLL
GQAGKVLRTAGKPDAIDGYHAKSRERVWLIASAIYSAMVKLQVGYALPPA
SFERNGQKIRLPNQIEANKVATCLDTTLLFAAAFEQAGLNPILVLTEGHA
LVGLWLQPEDLSSVLVYEAEVFRQRIPLKELILIETTLVTTHPPAPFSKA
VQAGSLAVSLEKDNEFIAAIDIRRARAHRINPVSLQTPRSQFTESDGEGE
NIEPGLEEAPSLPSYSVPDEEDLSDSSPDGRLERWQRKLLDLSARNPLLN
HKPGKTSLAFVCSDPGALEDVLATGARISIAPFPRFHAQEQDQDIYRQRT
GDDLKEEYARDALSKKQLLVELSQEELDKRAVEIYRKAQTSLKEGGSNTL
FLAIGFLLWKQKDKDDRRYRAPLILLPVSLERKSVRSGVKMTASEDDPRF
NTTLLEMLKKDFGIDIGGLHGPLPQDHSGIDVEGVWNKIRHAIKDAPGFE
VVEDVVLGHFSFAKYLMWKDLVDRSESLKQSAVVKHLLETPREPYESDIR
FVDPGDIDKEYTPADLLTPLPADSSQMSAIATADRGKNFVIIGPPGTGKS
QTIGNLIAHMMGKGKKVLFVSEKTAALEVVHRRLKDIGLGHFCLELHSNK
AKKADVLNQLRASWESFSQSKVNAWQAEAERLKALRDRLNQVVNALHTRR
RNGLTAHYAIGVKVRDNELAAKVKLSWPNADYHDDSQLQKLREAAELLGI
QAKAVGELVDHPLKVIANFDWRPQWQEEVVSAAGQLQASAKQAAKDLAVF
EGALGVSFGDADLSKLGAVEELGQVLLDSYRTQASFALEPDGPDRLEALE
EAVGQLKIYIDAQSRLSCKYEALAWKKLDADSLDIQWRDANQTWWPKSFF
AKRKVLKQMRQNGALGDPDPNNDIPVLKQLRTTGEYIDRLDGMLKGLRDW
NAHDSDPDVIASLKLLGSRARIAVSKLADDADGLIFLRSKIRGLLYDAND
LLAPEATVGKGIADFLSSLERLKAISQQFEGLIGNTLNGHLPSEASALEA
IDELCQGIVERHHSLRDWCGWVRRRSEAIDLQMGPLVEAVENGDVNPEDL
IDIFEAAYCAWWSSAVIGEDEVLRTFSSPEHESAILHFRDLDTQFSELTA
QYIAAKLAGEIPDPDDIKRSSSWGVLRHELQKKTRHKPVREMMEEIPDVV
TSLAPCLMMSPLSIAQFLSAEQALFDVVIFDEASQITVWDAVGSLARGKQ
VIVAGDPKQMPPTNFFARSDDDPDGDIDAEGDLESILDELIGASIPQRVL
NLHYRSRRESLIAFSNSRYYDSSLITFPAPVHPDKGVSLVRPEGFYARGK
ARHNQGEAKAIVAEIVRRITSTDPKVRTQSIGVVTFNTEQQTLIEDLLDK
ARSDDPSIEWAFSEESTLEPVFVKNLETVQGDERDVILFSITYGPDESDH
VTMNFGPLNRNGGERRLNVAMTRARSEMIVFSTMKPERIDLSRTQARAVA
DLKHFLEYAERGASALGAAVHGSIGDFESPFEIAVARALQDKGWIIHPQI
GVSAYRIDLGIVHPDAPGLYLAGVECDGAMYHSSAYARERDKIRQAVLEG
LGWTLFRVWSTDWWTNKAKALEDLHAMLQRHLEKVREEEARKEAGAEAVS
>HCH_03289 IS116/IS110/IS902 family transposase
MWRHFLRTVEEIADIEHKLAELIKKDEQCRRLQALEGVGLVGALLLKIVL
GNPGHFKNGREAAACVGLTPVQHSSGGKERIGSISRVSGNSRLRSALFQG
ALATITQLERRPCRTQKEVWLSQLVARRGKKVAAIALANKTVRTAYALLK
QGKEYQPELLAA
>HCH_05081 NTP pyrophosphohydrolase containing a Zn-finger, probably nucleic-acid-binding
MAVSFSYHPALVSGLESGARRHIYFHDDKLLLPAPDAQPWDAEEIENPEG
PVFLLGEVDGVSCSVGSLKQTPSGWTEVGLRDYLLGCDEIDDFRIVNAAS
QLLYWLRTQNFCSRCGERLGFNEKDRGLRCHGCGYISYPKVSPCVIVVVH
RGDEILLARSHRSFSKLPAFSCLAGFIEAGESAEEAVVREVMEESGVLVS
DIEYVTSQAWPFPHQLMLGYHARYVSGDLNIDTTELKEAAWFKVDQLPAV
SPMKTIAGRLIDAYVAKFR
>HCH_04706 Superfamily II DNA and RNA helicase
MPFFVALYTTSRGEESTPATHRSYTIQRNFTLSATAFSSLSLHPGLLQNL
STLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNKLDIK
RFCVQALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGS
LEHGAHIVVGTPGRVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALD
AIVEKMPAQRQTLLFSATYPNQIQSIAERVMLNPVMVKVESSHDNASIQQ
YYYKVEGDTHRLEVLRLLLLQYKPESTVVFCNTKRETQEVADMLVSHGFS
AVALHGDLEQRDRDQTLVCFANKSASILVATDVAARGLDIDALDAVINFH
IARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLEEYQEIIVSAE
PAPATSLLKNLAYKPPMETLQIDGGKKQKVRPGDILGALTGDNGVDGKLV
GKIHIFDNCAYVAVARSAVKLAMDKLGKGKMKGRSFRVRKIRS
>HCH_03259 Transposase and inactivated derivatives
MIIDDARSLPAAAQEEKRKQAVRLRKQGYSYHEIADKVGVHNLTVGKWIR
AYEAQGFSGIKSKPRGREPGSGQRLTLTQENRIRLLITDNSPDQLKLEYA
LWTRKAVQQLIAQETGEQLAIRTVGNYLAAWGFTPQKPAKKAYEQNPSLV
EKWLKEDYPVISGRTKAEGAEIYWGDETGLRSDAQHGRGYAPQGKTPVIR
LNARRESVNMISAISNQGKVRFQIYDGTMDADRLTGFMKRLIKDARRKVF
LILDNLRVHHAKVVKAWLEENRDHIEVFYLPAYSPELNPDEYLNCDLKAG
VHGGKPARKKGDLKKKVQSHMCMLQKKPERVKKYFNHPSIKYAA
>HCH_02955 hypothetical protein
MDAKRGGYRRQSLAKAAAQMGITVNGAHRAVADCFTTMEVIRAAFSKLLI
ADLMMANLSPTVG
>HCH_06545 DNA repair protein
MIASPRFAYDYLKLNLAELQHEAFGVLFLDNQHRVIEFDLMFRGTYNEST
VHTREIAKKALSLNAAAVILAHNHPSQNARPSQRDIRLTREVKRTLDLLE
VRVLDHVIIGGMEEFSFVENGIL
>HCH_01990 Micrococcal nuclease-like protein
MQMKLRLALCLILAAPMLVNAGIKDENFGSATVAQVTSIYDGDTFRADIA
DWPAIVGQRIGVRIKHIDTPELRGSCKKEKALALKAKQFLVEKLRNAKQV
KLENIQRDKYFRVLADVVADGESLGQSLIKEKLAVPYEGGTKIDWCKA
>HCH_04124 NAD-dependent DNA ligase (contains BRCT domain type II)
MDIFTEFNLNKIKDRQIDTLIGLSKGIVADGKVEQAEAEFLQTWLVQSRS
ASDNPIIVNLLDRVSVMLEDGVLDNEESSELLSVLRKISGDESYIGEVAK
ASRLPIIEPMPPITFQGRSFLFTGVCALGTREQCQEATEARGGVIAKNVT
KSLDYLVIGTYVTDSWVHENFGRKIEKAMTYRDSGVPVVIITEQHWAQSV
CM
>HCH_04254 Transposase and inactivated derivatives
MARKTRFNLTGHPQLIMQRGHNRLPCFFDKEDYLYFLECVGKASEQYQCY
VHAYVLLKNEFNLLVTPHIENGIPQMMQSLGRRYVQYVNHRYHRSGTLWE
GRYKSSLIDSSGYMLTCYRYIDSLAVFRGLAPNESEYPWSSYHAHARGED
ELGLIRNHPMYTDLGDDAEERQQSFLDLMQYEMEPWIRRHIEQTLLNELV
LGGDRFINQIEDLVDRPVRPMKRGRPPKDAAKS
>HCH_04648 Adenosine deaminase
MKTNANLDHDTCYNALISRDPRFDGCFFVGVTSTGVYCRPVCAVRKPKKE
NTLFFRSAAAAENGGFRPCLKCRPELAPGLAAVDSKRQLARAASNLIEQG
FLRGRSLAQLAARVGVSDRYLRDLFQSEFGVSPVQYSQTHRLLLAKQLLT
ESDLSMTDVALAAGFNSTRRFNDLFQKHYGLIPSKVRRRSGPAQTDMISF
EMPYRPPYAWDALLSFLSARTIAGVDAVVDGRYHRIVRVEAGEDSAVGWF
EASHEADAARIRIRLDSTLSRHIGYLINRLRAFFDVSCVPQEINKVLGTL
AQNEPGMRIPSGMDGFEIAVRAILGQQITVAAARTLLARLVDKFGDPIET
PFPEINRTFPSAATLVNLPVEELASLGVIRTRVRAIQEIAAAMLRSELTL
SPAANVEQEIQRLHAIPGIGDWTAQYIAMRAMSWPDAFPASDVGVRKALG
GVDAKQSARAAEEWRPWRGYAVMHLWRSLELPHD
>HCH_02817 RecB family exonuclease
MEEERLIPLSALQHYVYCPRQCALIHIERFWAENYWTAQGRVLHQRTDEG
KPEQRANTRIERSVEVISHELGVQGVLDVLEIDLRDMTFTPVEYKRGKPK
VTNCDRVQLCAQALCLEEMRGVKIDRAALWYWEVRQREWVELDAALRAET
LDVISQVQALFSSQRTPRAVYGKHCLACSLRDECQPKAMQEDRVDQYLRG
MLEP
>HCH_04775 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MSDSPEINPWRTLSSNQVYVNPWIQVEHREVIAPTGKPGIYGVVHMKNKA
VGIVPVDDEGHTWLVGQYRYATECYSWEIPMGGAPHDEWTADAARRELQE
ETGLIADELSELMRLHTSNCVTDEQGVVYVARMLTQVGWNPDETEELKVR
RLPLQEAVSMALSGAITDAISVAALLKIALQHPEWLTQSEQG
>HCH_04242 Serine/threonine protein kinase
MSDTQIFDPASMDSQYFGKYKAQRELGRGAMGVVYQCFDPDFERIVAVKV
LLPELLGADVTGEFRERFRNEMRAAGKISHPNVINVFDAGDQDGAPYFVM
EYVEGYELKSALDDGQRFPIDKTLKIMTDVLSGLGHIHEHGIIHRDLKPA
NIFITKNGVAKIADFGVAKLESSELTRVGTIIGSPRYMSPEQCQGLPVDA
RSDLFAAGIIFYQLLTNEHCFNANSPTAIMQKILHAKPELPSMLIPTLSK
YYDAVVVKALEKSPEKRYQSAEEFIQALMQAADGKKGGGVKGPMFAGVGG
LLAVAAAGLLYVLMPPVEQNGVSHPVEPVKLTPRTVNGTEAAVSQANTDN
ADNHNVNGGNTSSSDNSQNGSISSNAATGTTNPVRPASNEVQSLNPEVSA
KIDRLLKVAKVHRLQGRLVTPSGSSAYDAYKIVLEIDPANQVAQEGLKTL
EHDLVVRVGELRDQGESQMALAEATTGSQLFPTSEQLSKLAAQLKK
>HCH_03956 Retron-type reverse transcriptase
MTSVSLTAESAFSGRPEHWHQIDWKHVNQTVRGIQIRIAKATKEEDWRKV
KALQRFLTRSFCGRVLAIRRVTENQGRRTPGVDGVLWSTPEAKWAAIGQL
KRRGYRALPLRRVRIPKANGKERLLGIPTMQDRAMQALYLLALQPVSETR
ADRDSYGFRPDRSTADAIMQCYMLLRKKGSAQWVLEADIKGCFDHIDHQW
LIDNVPMDKLMLRKWLKAGVVDMGRVWKTEEGTPQGGIISPTLANMALDG
IEALLAQHFGAKGSKKLRQYKVGLVRYADDFVITGSSKELLENEVKPLIE
KFLAVRGLKLSVEKTQVTHINHGFDFLGWTVRKYQSKLLIKPSRKNTKAF
LTKCRDVINANKSAKQENLIHRLNPIIRGWVNYHKHQVASDAFARVDAQL
WHALWRWARRRHSKKGKRWIASRYWQHIDNRLWTFADTTIDDLGAEKTVK
LVYATDTKIKRHTKVKSEANPFDPEWELYFEELRGKRMRDSLQYRRRVNS
LYVQQFGKCALCEQAITHETGWHEHHLIHRVNGGDDSLANLVLLHPACHM
QVHHQHISVTKPALSGVS
>HCH_05223 Alkylated DNA repair protein
MQLRQHPDLQIEPITIANGALTLIHPLLADADAAFVLEDLTQHLDWRQDS
LRIQGRTIPIPRLQAWYGEPHCHYAYSGLRLNPTPFSPLLQQLRHIASEH
AAAKFNCALCNLYRNGQDSVSWHADDEPELGPAPIIASFSFGATRTFQIK
PKRGGQTLAIELLHNSLLIMSGDMQRHWRHQLPKTKAPVGPRVNLTYRYI
PAA
>HCH_01332 Transposase and inactivated derivatives
MKYVNHLKPAEIKTLTDGFRYSPSSRFRIRCHAILLSNKGYKIDKIADII
DFHRNTISIWIEQWESMGICGLISDASPGRPPIYTEQEQEKVCKWIDEQP
QQLRDVQVRLEKETGKSASLETVKRNLKKIKV
>HCH_02852 Integrase
MASSRKRVTKSGEVRWYREIRIKRDGKIIYREGKTWPSKRLADEWGKRRE
LELAQPGALERMRHSGTTLSDVLSWYYDEYKDIARFGRSKSYRLRAMMQM
EELRVPILSLNSSHLVEFVRARRRHAGPSTVRSDLAYLKNAVKLARGHFE
DFPVDMRVFDDAGAVCWKNKLIAMSARRDRRPTDDELRMLTDYFRNRAMK
PKMVIPMYDIIWFAIHSARRLSEILEIRWADNDSETLTGLARDVKHPTKK
HGNHRKFKYTREAWDIVSRQERNPDDDRIFPYKANAVSRRFCLACRELGI
NDLRFHDLRHEATSRLFERGYDIVQVQQFTLHESWRELQRYTNLRPADVP
LLPAAPHHLDFSNG
>HCH_01182 Transposase and inactivated derivatives
MKDLQSWEDAGEIELYYFDESGFSQRSNLPYGWSPVGKPTQMKSYPHNKR
LNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPLKPAVVLLDN
ASIHRSAEFRRHRLDWIDKGIWPIYLPKYSPELNLIEILWRKVKYSWLPL
DSYETFDRLKESVNDILSKFGQEYKINFV
>HCH_07066 Tn7-like transposition protein B
MFMPNDVYSWDQRRIRILWSNRQAVFWIDIDDEGALPQIASKSDLEHLLA
RADLKAITDPYLNVSMTPSKSGSKAEAVQEKAWAAIKDAVKAEPEIYQRK
TRGELLNRVLGETGTTKQTVYRWLRRYWQFGMCKNALNGRYDLCGGVGKP
KSFESKRNGRMRTRSPGEGVPITDGIKSLFRIVIEKCLLNEGKYEFDYAY
NQLLISYGVKIPSTPEDLINVPTERQFKYFYQKEYTSIEVTKKREGEINY
LKDFSPSLGTSTAEVPGPGYLYQIDATIADVYLTSEHDRAEIIGRPTMYF
VVDVFSRAIVGMYVGLENASWVSAMEALGNAMADKVAYCAEYGVEITSDL
WPMEGLPENIIGDRGEMLGRHVEVLSKSFHVDIQNTPAFRADWKGIVERY
FRTIQTKMKPFVEGYVTKDPIGKKRHGNDYRQDGMLTLKEFTKMIIKIVL
HYNNDHVVSTYDIDSDVPKSLPANPLILWNWGIEYRTGLLRRPDPQLVKI
NLLPHTNATVTEYGLKLFGCYYSCKQALDWGWFEENYRGPKTVTVAYDLY
STNVIYLRPSDSYLEFIPANLTARSRAYADITVWELWIAQDMRRDVAATS
KLKQRSGSVNLVSDLQQIKDESKQQQPTYSKAEKAKRVKGINDNKRNERQ
YERSKKTADRKAPVDNHTATVTPIHGGTSGQKGFKLPTRLKDLLKEDDAD
E
>HCH_03294 Transposase and inactivated derivatives
MPHDLPPWQVVYQQTRRWIDAGVFEALLHDLRELIRIADKRNAQPSAMIL
DSRTLQSTPESGARAGYDGAKRLKGSKVHLAVDTLGQLLALRITPANEQD
RDQVAALAEQVQKVTGESVEVAFVDQGYTGESAARQAEQHGIRLEVVKHT
EAKKGFILLPRRWVVERSFGWMARFRRLSRDYERLSTVLAGFHFIAFVCL
MLPTAMKALAASGVSMN
>HCH_06752 probable phage protein
MQTFDNRNEIAEALASDGQFAFKRVGEYLQQGKCPNCGKKELFVSMKEPW
RVSCNRLKHCGYSETTREIYPELFNNYSERFPTSEANPNATADAYLAHNR
RFPLSEMVGWYEQGSYKLPKSQEWCNTVRFYLNSDRTLYWERLIDKQKDD
GQRINFSGKRHNVNGRWVLVDPVKGKWWMPPTQELKQGDRVYIVEGIFHA
LALHFSERKAVAILAAGYYPSEAIKPYLGKKITWVLALDDDAAGRKSMKS
HYTKLQMAGEKVEISLTGTSKDWDDLYRLDRINDTFLQEAQYRGKMFTAQ
SVMWKAYAYYLWKRHSYFVIDFENRLYSVSVDLHKLSEALDGAALTLGKG
YDSFSQHCTAFPISNFVPELLYAERDDILDEKFYVFRVQYSSNNADALIP
LDGGNIDTPSSFHKAMITKGYGAFSGSSKDMAMLHEQWLNRKVKEIQSIP
YVGYHADSQAYVYQTFAFSKGKELELNAEGYFELERGGIKTSFKGFRVQP
GEFNPEWIDNFITTFSWQGLTALAFWLGSLFVQQIRAKHKSFPFLELTGD
PGAGKSTLIEFLWKLLGRDDYEGFDAMKATAAGRRRAFTQSSNMPLVLIE
SDRGDEPDVKKKQFDFDEFKPFFNGRAVGTLGVAKRGNDTEEPLFLGSLV
FAQNAMVDGSEALLQRIVHCHCTTEHHSPGTRKLAQWFERQIVDQMAGFM
RKALENETQILNTFFNEFNRYEEAFTRRGEIKTSLLRLVKNHAQIMAAAK
ALRHIFPTLNESAFSGLSDYLYGRALSRQERLADDHPAVAEFWESFEYLN
AQPDPNAFASSALVEVLNHAVGTGNIAVNLNHFDEVCRTHGQKSLDLKAL
KKLLPNSQRYKFIETGKVYSRSLNKTIHCWIFKR
>HCH_05198 group II intron-encoding maturase
MKTEAIRMGQGIQGDVGRYPAETEARVEADTGAHSWTNAEPNTLMEQVLE
RPNLMHAYQRVMSNKGAAGVDQMPVAALKGHLQQHWPTLRERLLAGDYHP
QPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHSYG
FRPGRSAHQAVRAMQRHINDGHRWVVDLDLEQFFDRVNHDVLMGLLARRI
ADRRMLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDR
ELERRGHRFCRYADDCNIYVRSERAGHRVMTSITHYLKMHLRLKVNAEKS
AVDRPWRRSYLGYSVSWRKQVRLRIAPKSLKRYQAKLRQLLRQSRGRPLQ
TTIARLNPALRGWANYYRLTTSKRPVEGLDGWVRRRLRLLLWRQWKRTYT
RARNLMRLGLSEQRAWSSASNGRGPWWNSGASHMNAALPKRMFDRLSLVS
LLDTMNRLQRQS
>HCH_03785 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
MLSFKDAVRKRPGMYFGDIDHNAVNHVIYELVANVVDLFLAGRATTLKVD
VSECEIIVIDDGPGFPFPVEDSAHNLVERYLTHHHDKPTADDHAPHIHVL
GGGLGLAAVNAVSEKLTIESSNGAWRWRQVFGKGDVLAPLESFRYDGPSG
SSIKFTLDPSVFHNRLPDFFQLRKAMFELAHLYSGLIVEFDGERYVSKQG
LMELAYLMWSGPKWAFNPKMFRFKGQTEDVGFEVAAIGDGGSPPCYKSWV
NGCETEEHGAHVNGLRQALNYAGWAPDIALISIVMHDPKFAGPVKSRFCN
RRVKSLIAEALADPLKMFKSKSEDN
>HCH_00756 conserved hypothetical protein
MKLFRAVFCLLSALLLSAPVFAVKSDASLSANLLAQTGVDELLSRYPDMI
KTGIRANIRRTGASEDLMDLFERVVDGAYQADDLQSQVERRLEQQLSPAE
MRHILQWYRSPIGQKIVAAELNAMSTEEYAEAQKRMESLSEENKGGEREH
LFSAYDRATRATDSMLDNTVTIQLAMAAAITSVVKGPELPSYHDLKRVIE
ERRFSMRGMVGQQVYLNYLYTYRNVPLTDMKDYIAFARTDAGSRFVEALK
TALFDVLEERSEMLGERLNQLAGAQ
>HCH_00114 Serine/threonine protein kinase
MGVVYKGHDPDIDRPVAIKMLHAHLMVDQSDGGLLARFRQEAQAAARCLH
TNIVTVFDFGVFKNSPYMVMEFVDGIDLRSFLRENMQLSVRQIGDLVIQV
LEALDYAHLKGVVHRDVKPANILLLESGHVKVTDFGVAKLDTSELTNVGD
VIGTPSYMSPEALRGDRVDGRSDLFSAGIVLLELIAGKRPQKGGLPWTEK
EILQFIADSPTLPVQLDRAFSSLLAKALTADPSDRYETGQEFAIALKTLL
APNQVYVPDLNDLAATVIQSKVTFAGRQSDQPSTYSSSSSSQIALSPEVS
LILSQTLAPFLGPVAHHMIRNAAASSTTLQEMIEKLSRHIPNEVERRNFL
NTLNRTGIRSMPSETTGSGASRITTIGSRSSIRPGQAGPLTLSGETLQKL
TQLLAHHVGPLASRLVRKSVKSSSDMETLFKDLANSIPDESERTQFISKA
RKSI
>HCH_05002 Exonuclease I
MADTFYWYDFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAED
VLPQPEACLITGITPQKALSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIR
FDDEVTRNTLYRNFYDPYSREWRNGNSRWDVIDMVRLTYAMRPDGINWPM
NAEGVPSFRLEELTKANGVTHEAAHDAMSDVYATIAVARLIKTAQPKLYD
YVLGHRNKKVLEGLVDIERMKPLFHVSSKFPAALGCCAMVAPIARHPTNP
NGVIVYDLRADPSTWTHLPVEKIRERIFTSNEDLPEGAERIPLKVVHLNK
CPILVESKILKTMDPERLRGFQLDGDKLRSHLQALRQAENIQQRVAEVFN
EPMDDSETDPDLMLYSGGFFSNNDRELMTFIHEQSPEVLGELELPFEDPR
LQEMLFRYRARNFPGTLNEEEMEKWERYRYHRLAGESSGASISFQAYFKK
LEQLAANPDITPFQLSILQDLHLYGESIIPMDF
>HCH_05698 Site-specific recombinase
MNDVVKRRLRCAVYTRKSHEEGLDQEYNSIDAQREAGHAYIASQRAEGWI
PVEDDYDDPAYSGGNMDRPALTRLLRDIEAGKIDVVVLYKLDRLTRSLTD
FSRMVEVFDRHNASFVSVTQQFNTTTSMGRLMLNILLSFAQFEREVTGER
IRDKIAASKRKGMWMGGIPPLGYDVKDRRLVPNEREAKLVHHIFRRFAEL
GSSTTLVKELRLDGATSKSWTTQDGRFRKGKPIDKSLIYKLLNNRTYLGE
LRHKDQWHQAEHPPIIDQELWEQVQAILSKNGRGRAASTRAKVSYLLKGI
VFGYDGRALSPWHTTKKNGKRYRYYIPQRDAKEGAGASGLPRLPAAELEA
AVLEQLRGILRSPTLLREMAPVAAGLDPELDEAKVTVAMSRLDEIWDQLF
PVEQTRIVRLLVEKVVVSPNDLEVRLRMNGIERMALELQPAINSSHEGAA
A
>HCH_03288 Transposase and inactivated derivatives
MIPRKRNSVKGNDDMDWGLYKYRHLVENAFARLKQYRAIATRYDKLKRNY
ESMVAMESCGGTHYWERYAEAAGHYVKAISARQVKAFRQGQKTDANDALA
IAVRQPHIKTSRVISAQEQCLQGIECMRDLLVKQKVSLSNQLRGLLLEFG
LPIAQGDRALN
>HCH_02126 group II intron-encoding maturase
MKTEAIRMGQGIQGDVGRYPAETEARVEADTGAHSWTNAEPNTLMEQVLE
RPNLMHAYQRVMSNKGAAGVDQMPVAALKGHLQQHWPTLRERLLAGDYHP
QPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHSYG
FRPGRSAHQAVRAMQRHINDGHRWVVDLDLEQFFDRVNHDVLMGLLARRI
ADRRMLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDR
ELERRGHRFCRYADDCNIYVRSERAGHRVMTSITHYLKMHLRLKVNAEKS
AVDRPWRRSYLGYSVSWRKQVRLRIAPKSLKRYQAKLRQLLRQSRGRPLQ
TTIARLNPALRGWANYYRLTTSKRPVEGLDGWVRRRLRLLLWRQWKRTYT
RARNLMRLGLSEQRAWSSASNGRGPWWNSGASHMNAALPKRMFDRLSLVS
LLDTMNRLQRQS
>HCH_06010 Factor for inversion stimulation Fis, transcriptional activator
MTTESIVTTETGSGANKLLTVEQSATQTMTLRDSVDQALANYFAQLDGAP
VKDVYQMVLSEVEAPLLEQVLKYTRNNQTKASVLLGLNRGTLRKKLKQYD
LL
>HCH_00555 protein containing HHH motif
MGSFILFIAVLVIIYQLSNISRNTADALDKQVALQYEIVAVEKRLDQLTE
LLSARQFESRQESAVIVDADELVNINHATVKQLTSLPKIGRATAQKIAEA
RPFSKPEDLKLVQGINEDIFADLAEKITV
>HCH_05641 conserved hypothetical protein
MKTVNECVQWLVILIILYVLLFKIDFDFLKSAPKRVPQTEERLSQQEERL
NSLKNKMEEIQTQVDQINQKISTIEKKSDTTEKNENLEKIRIDLSSLKYQ
MDLLSDKIQQQVKSEKNIETTSLNKVENGVEIGAVAQWTKNNIFIVGISL
SLLLFALIHSIVKRKRRQLADVAPLNFVKSHSNKDRECA
>HCH_00623 Integrase
MGKLSDTKIRNAKTETDTCLSDGNGLSLRIYPKRGKIARTWVFRYRRPAT
KKPAKLSLGDYPVISLRAARQQAEIMRQQLFEGLDPQYVQKEQRAENANA
ITTQQLFESWLTLQKSAKEVTDRTLADHEARWRVHLEKSLGPLLAKHVIR
RQIAAVLDSMVAKGIKEETRKCLCLLKMLFRFAEERHLIKENPIEGLSAK
SFKITAGAPRDRALPLSELRSFWRLLDSASITPATANAFKLLILTGARRG
EVTMMRWSELDLTQGMWVLPPERTKNRKAHTLYLPNLAMRLIESMRPISG
HGEYVLSLGNGITPLSTEGLTVTLRRLSTRLESVPHFTVHDLRRSAATAW
GEHLKTSPHVIEKMLNHQPRDRLVATYQRAAYIDEQKMAWKAWGEMVENH
VANDFGNVVPLHARQD
>HCH_03782 hypothetical protein
MVALFREQHVAVPEDLGLAEGVLFGDAASQGVIVVAGFRRAQALSQLSTH
FEGQLDAHIDLLLK
>HCH_03827 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MLKFDVGDNRFNFRSAAVIMHQDHVLLHKAVQDNFWALPGGRVEFFEFSS
DTLAREVEEELGMTARVIRPLWYVENFFQYQQTRFHEIATLYLTELADPD
VIPFNVDFPGVEEDVDLIFRWFKLSELDSIELAPDFLKTRLRSLPEGVEF
LTVNEIES
>HCH_06750 Integrase
MAFKKVATGWQVDIRPEGRGGKRVRKTFPKLQQAKQWEAEQKSKAYSGEW
KAPTKDKRRLSDLVKTWHDLHGHTLKDADNRLHALKVLCEKLNNPIAKEF
TAEDFLEYRRWRLTQKVKNSNRLVSANTVNHDHMYLSAVFNKLIKFGNWK
LENPLKGVSKLRIDERDLTYLEKDQIRALLEALKKSRNPNVLAMSKICLA
TGARWGEAEKLNAEQIRHNKVHFVGTKNSKSRAVPISEELAVEILSGRAE
RGRLFRGAGSEEAFERAVKRAGLTLPHGQLTHILRHTFASHYMINDGNIL
KLKYILGHASLDMTIRYAKLAPAHLADAVSKNPLATL
>HCH_03258 hypothetical protein
MIAMEDNKVAASIITNSTNGILSITVTFSNTGETSYFLNKKLAFHNGIYT
ISCLSLNAEGKEIKRRINIKVKPSSFPDDYIEIKPHSSHKGSLILNEYFN
LPDSGIISIQYQASPRNPITGDVDVINSAITEIEIGDY
>HCH_06382 Transposase and inactivated derivatives
MKSYPHNKRLNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPL
KPAVVLLDNASMHRSAEFRRHRLDWIDKGIWPIYLPKYSPELNLIEILWR
KVKYSWLPLDSYETFDRLKESVNDILSKFGQEYKINFV
>HCH_04705 Superfamily II DNA and RNA helicase
MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTG
KTAAFTLPILERLSKGDRARSNQARALILTPTRELAAQVGECVSIYSSKL
PLRSTVVFGGVKINPQMMRLRRGVDVIVATPGRLLDLYNQNAVRFQDLEV
LVLDEADRMLDMGFIHDIRKILDILPKRRQNLMFSATFSNDIRKLAKELV
NNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRDNNWDQALVFS
RTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVAT
DIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSAD
EFKLLADIERLIQKRLPREEIEGFEPEQRLPESRLPTQPVKARKPKKPKA
AKSGEQREQDRKGEKKGPRQDGAARNNANAPRRQRRRGTGAGRPAPRKEA
KSN
>HCH_01378 Transposase and inactivated derivatives
MARLPRLYLPGCAHHIIQRGNNREPCFYDEADYKAYLSFLKDAADKYQVD
IHAFVLMTNHVHILATPVDDQGISRMMQAQGRKYVQYFNYTHSRTGTLWE
GRYKSTLVDSETYLLTVYRYIELNPVRAEMVEHASEYPWSSYRHNALGRM
IQLIRPHSIYQQLGKTAEERQKHYRLLFRGRMPEQDLSAIREATNKAWVL
GNDRFKAEIEAKTGRRAKPLGRGGDRKSEKFRVMKDQ
>HCH_07034 Transposase
MAARIPGDIIAVDGKTLRGSYDRASSKAAIHMVSAWSTANELVLGQLKTE
EKSNEFTAIPKLFTLLALEDCPVTIDAIGRQRDIAKQIVDKNADYLLVVK
HNQHTLHEGIHDLYIEAEAKGFTEDFTDSVTEEGDKHGRIDKLHCRVTHR
FSGLGALADKTRPNSLWVAEVYRYNSNAGLIIDSRE
>HCH_03825 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MKFESGDKRFKFRSVAVIIHNGHVLLHKVVKGDFWALPGGKVEFFEFSHT
TLIRELEEELGVAANIVRPLWFVEDFYARGGVKSHEIATYYLTTLQDPNA
IPFGQDVRGLEQDVNIVFRWVKLADVASLNLWPQFLKERLTALPQEVEFI
HINELK
>HCH_06680 conserved hypothetical protein
MLRKIIISVSLWASSMMAFAHLSGFTDTSIQIAEPGVKLIYTLPSDNLLE
LEPNVDMRVEAPEAYLAQVAAGWSVSADKRACFLEERQATALPDIESYQY
TLTYQCPQGMDAVSIRYQLFNEQWRGHQNYVRVFMADNRMRMRFTFDRQT
LDLPVAKLLQEWSSRLTAEFLALDPHSRLAVEGWENPLADEPGGLDTSSA
AQSGVIDPAFLWVGMEHIWQGADHILFLICLLLVPASLGRILLWATSFTL
AHSITLALSAFDVISIPPTVTEPLIALTIVFLGLENLYYLVRQNRADVDL
NRVYRNRWWVIFCFGLIHGVGFSYLLRELSSGEGVWGRLLMFNLGVEIGQ
VAIIALLLIPAYVMFKWRHGLKLGGVSSLLTSLVGLIWLAQRI
>HCH_05984 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MIDAEGYRPNVGIILCNPQGEVFWARRIGQDSWQFPQGGIKKDESPEEAL
FRELKEEVGLPPEAVEIVAGTRGWLRYRLPKKMIRYDSHPVCVGQKQKWF
MLQLLADESEICTNYTDKPEFDGWRWVSYWYPLGQVVSFKREVYRRAMRE
FAPVLFKREES
>HCH_06383 Transposase and inactivated derivatives
MKYVNHLKPAEIKTLTDGFRYSPSSRFRIRCHAILLSNKGYKIDKIADII
DFHRNTISIWIEQWESMGICGLISDASPGRPPIYTEQEQEKVCKWIDEQP
QQLRDVQIRLEKETGKSASLETVKRNLKKIKV
>HCH_02574 Transposase and inactivated derivatives
MPRQGLRVKVARKFKATTYSGHNLPVAENLLQQDFKATAINQKWAGDITY
LWTKEGWLYLAVVLDLFSRQIIGWAMSPRMKSELVCDALRMALWRRHQPK
GVIVHSDRGSQYCLEAYDADPGA
>HCH_06237 protein containing OB-fold nucleic acid binding domain
MKRVKSTVSYPAPNVLMGNSGSVPGWQLYRGMGGRLRLESVATLVWNTQL
EDETGSINILVWKKTAIAQMDILVKARLLMVYGELDKDEEGRVAHVLAHR
LTDLTPHLEELESRSRDFH
>HCH_05895 predicted endonuclease distantly related to archaeal Holliday junction resolvase
MPFKRLIKSIDIGRAAESQAEKFARAQGFTIVERNFRCKGGEIDLIARHG
EHLVFIEVRHRSSDKFGSAAESITQKKQQRIILAANIYLQKKGLTNMPCR
FDVIVGNLKSNTGFQWIPDAFSCW
>HCH_06331 Transposase and inactivated derivatives
MIIDDARSLPAAAQEEKRKQAVRLRKQGYSYHEIADKVGVHNLTVGKWIR
AYEAHGFSGIKSKPRGREPGSGQRLTLTQENRIRLLITDNSPDQLKLEYA
LWTRKAVQQLIAQETGEQLAIRTVGNYLAAWGFTPQRPAKTSRL
>HCH_05710 Superfamily I DNA and RNA helicase
MAQLALHRDVLFQSRTLPKKVHKKLVELVRKFEEDHTQASINLEKLEMAQ
DSRVRSARLGDDYRAILIAPEEGSTYIVVYVDHHDEAYQWCKNKLFLENK
RLGYFHVLNTDIINLSKEQDESIENCSQYPLSALSDEDLFYAGIPKVLIP
SVRAVKCDDDFERLADFLPEEAKQILYGIACGLTLDVAMEETLGIQLSTI
SHETISGSESTYYSNLIFIEGEEHLREILQGDIAEWRLFLHPSQKRLVEW
NIQGPMKVNGAAGTGKTVVLMHRAQWLARQIKPNEKILITTFTKNLAVTI
KGLLGQMIPEHMDNIDVINLHLLAKNICHKTSFNLRTSDDKTVTSMLRQF
LSDMPVTTEFSHNFILDEFYEVIEKMSIETEGKYLEVLRKGRPRIKRTQR
LSLWPIFVEMKAFLNKEGIASFEELLRMALNEVENSQHPKYKHVLVDELQ
DFSLTALGLVASLSKLDGSSSNPLCLVGDGHQRIYSNTQVSLRHAGINVI
GRSRRLKINYRMSEQIRNFAHATIAGLSIDDLDEGVTNTNGDRSIFKGAS
PRVLKVTSFQQAATEIANWIVDIKSSSKGNIKDHEICITSRSRYFIDSLN
REGVDIYELQADKQDPGETAPGIRYGTKKRVKGLEFKAVAVILNGNSTER
KALLEDYVAISRARDFLLAITVEND
>HCH_06756 putative exonuclease
MNNELLELFKGWLYSPQVVVLDTETTGLDDQAEVIEVSVMDMRGKVLFDQ
LVRPLNPVPDEAADIHGITSESLADKPNFPDVYHSLKRVISGKTVVAYNA
DFDSRLLMQTCAAYGLPVIEADWQCAMNAYTRYRKEPDAKRGGYRRQSLA
KAAAQMGIEVHGAHRALADCFTTVEVIGSVYSKLSAKLS
>HCH_07062 Transposase and inactivated derivatives
MLEQARRKTKPRTIDLYEVFCEVLYLLRTGCQWRVLPSDFPR
>HCH_03627 Superfamily II DNA/RNA helicase, SNF2 family
MSIRDLINRLTNSSHDIDISWKVDPVEGLDFIFRPEALADIESRAINNPM
FGIQYAYLKGLHEEGVARNNANGYTIPAHFVAELDDDFCELFQLPRPYPG
LYRCRIKGNTGQAAFHVSMDAELPDGCVINDIALFGPFLKFTDEELYRLS
PPEWQALNALKRHIDLPADSKNEYENNWLIFQLQLAKKAGVPLNLAHFNK
LEISLPTSIGIAVDELPNGDLSLTPTFGADIAIDDIKTRLDQLPTNGDHC
ILRIKNRFVLLDSKRLEAAREILTSRHIPKEQVATFLRSPTAYLNAALID
LDTGFSLRVHGAEKFSHRYFGDVEKSGIDWFAVDKSIPEPFERIKDLVVS
EDNLAELNELISDAKNGGAELIEYADKKFDISDTENVSQTIDRIREALAS
SDLDKAPPALTDEKESDTTIKEQAVVSIDSNDEKEEFVSNIPLGGINATI
QSFATDNLKRSPYPHQSEGIKWLLAHMDIAIEHDAPKGALLADDMGLGKT
YMALVAISEWLRRQKPEGKYDKPVLIVAPLSLLENWQAEVNETFIKSPFS
DIVILQSGSELSRFKIKGASRETQQVFEDKDIIEDYEQIRYSLKVGGLYG
SDRLDMPRRLVLTTYQTLRDYQFSLSRVDWSAIVFDEAQNIKNPNALATR
AAKGLKADFKLLATGTPVENTLKDFWCLMDTAVPGLLGAWQTFREEYISP
ITSADPDSINNEKLRIGKALRDRVGDFMLRRTKEEKLPGMPEKTIYSGDP
NDLTDSYLPTLSGMMSGAQLKYYDEVIASVHGRKIEDKRRIVLPSLLKLK
IACIHHDIGSGYTPSNSPKEFLRHAENSIKIQAMLDVLKDIEKRQEKVLV
FATSKAVQAYTSALITTLFKIQAPIVNGDTKAVATPKDDLTRKAIIDRFQ
SEKGFRVLIMSPIAAGVGLTVVGANNVIHLERHWNPAKEAQATDRVYRIG
QKKNVNVYLPMALHPNLSSFDIQLNTLLNNKVTLSDAVVAPTSVQPEDFS
IFK
>HCH_03236 3-methyladenine DNA glycosylase
MSVTIESAESKPRCSWSQTPDFHAYHDNEWGFPVRDDFRLFEKLCLESFQ
SGLSWRLILAKRENFRAAFHHFDFNKIAAFTEEDVNRLLKDEGIVRHRGK
IEAVINNAKCAQALVEIEGSLATFIWRFEPAHDQRQKPQTASTSPESVAL
SKALKKMGWKFVGPTTVFAFMQAMGLINDHTEECAIRAEVERSREVFQRP
>HCH_03471 Serine/threonine protein kinase
MDKFWKQITTSDHTWEQEALDFVKAALPDHEPYRAWANFEFITKEGFVNE
VDLLVHTPKGLFLVEIKSHPGVMKGDAGIWIWEAPEGKRKAFDNPLLLTD
RKAKKLASLLQAQDAARKSSKERIPFITPVIFLSAPNIVNKLEGNGRKQV
YTRKNFIEEITRIDDSWKHKKLDKVSAKTVSQAMLQAGIKESLRTRRVGQ
FDLAELLDETDLYQEWLGRHVDTQVRRRVRIYLTQGKAADEAARLDKAAH
LEAQLLEGVDYPGILKTLEFQRHDHGPALIYENFDGSQRLDHWLLKQDEG
KRLDQSVAVSLLRSIAETVKYAHSQKLYHRALSPQSIFIKEENGEFKIKI
ANWATAQRIFETESKHISAFSKLTRMVQEESGSYMALESHTLEEADGTQL
DVFSLGAIAYHLFTGKKPAANELELQDKLGKDGLQVTDVINGASSWVSYL
VQYATHPDPGARLDSVQDFLDYLTEVENDITRPEGEVTQKPTEAKKGDTF
EGGYTVIKRLGRGACSVAFLVEYQGQQRVLKMALDPEHNRRLHQEGETLG
QLRHQAIIAHHKTLDILGHTCLLIDYATGGTLAQRIRRTGAIQLELLERF
GDDLLSAMVHLEDKALMHRDIKPDNIGVTELGSQLHLVLFDFSLSNAGTD
NIKVGTMAYMDPYIRDAGRRRWDDYAERFAAALTLYEMAAGTLPGWAANQ
GLPIDLEHELQLDASVFDPSIRSSMAKFFQRALARDLGSRFATAADMLRA
WRQVFLQASKESRHPTVHGEVPTCPVEEAQQDTQIGLLELSPQALDALSR
RNLNTVADLLKQNRSKVRAWPGVGIKTRNEVSELIRKLQEKWPNEVAQPV
SQHDGAQQASVDRLFGLIYPKTPDISRRSFLNEFLGRLDSEAPKGHHNVH
WPSITMLCSEINMEAAEARQILSKLTTQWGKLSEVNLLRNEIVEILTENG
GVMTAIELADAVLLRRGSVEDNPIRSRHAQAVVRAAVETEISKQQPRWIL
RRFGNRYVIADNQQEQGEDLATYAQDLGQLASECALKQPLLSPQATLDKV
RAVPAPETFTGLSTHRLLRLAAAASEQAALSSRAEFYPRDMEAAQALELA
QGALLGSKALTVAEVQVRVKGRYPAAKPLPGRPHLDDLVLKLDMGFLWDP
NYETFDKDGKKQLGAYCLPITSFTEYQATQTKTSLTQQTDWDGEAWQDEK
SIRQSISNSLRDGRFLALGVRPRDMEKAKIKLCSTYGLVSFSFDELLLRR
LHQHCAAMKNPPNWQVVLKADAADQTSRDWVNLQRLVHQVLPSIADEIKQ
SDKPVLLTEPGLIARYDLIHTWLNELRQHLANTGHVHALVLLIVGDAQQH
APVIDGKVIPLEAGNSIYARLSGSWVKPDQPQFSN
>HCH_00556 Bacterial nucleoid DNA-binding protein
MRKPELAAAIAARTNLSKSKAAEVLNALTDEIADAVSRNETVSLIGFGTF
SQRNRSARTGKNPKTGAAIKIPASKTVGFKAGKLLKDAVNK
>HCH_00882 Rad3-related DNA helicase
MAIKTSASDKLTYKLSVREAAHFLAQLGDLDHQDRETASAREGQLAHKQV
QESWPADYVSEAPVKITLSEADFQLQLQGRIDGLRVADDHVLFEEIKTLR
QDPQRLPLGLAERHRLQLLLYALLWRQEQTAPPPTPSRLRLNYVRVPDME
QTRFDNEMSCEEAQQESDALFQRLQDWYRSLTQHRFERNALLRDLDFPYS
GFRPGQRELARQTYLSLRDAGQALIEAPTGSGKSLATLFPALKAMGEGHL
DQVMLITAKTSSQEAALKALRDMRLHTTSLRVLHLHARERICGGDSVCDP
LDCPRRRDFYQRLPEAREEALAAAWLDGERLRDIALKHDLCPHGLQGELA
PWVDVLIGDYNYAFSPQVRSDSLFTRNRVGLLADEAHNLPDRARDLFSAE
LSEAPFNRIGRQCKALKKDANAVAKAINQMQITPEQAPGKGQQALEGRLQ
DFCAAAENWLMSPQDLLAPADTELNRQVQEAIFNAQAWIRLAPSIGDDFA
CFERHWEQQRVLSLRCLSPARLLRPMLQACHGATLFSATLTPPYYYQNLL
GLEENPRRLRSLSPFPPEHLGIFVAPYLNFRLRSRESQLDAVCALIHQTI
ASRPGNYWTFTPAFSYMEQLTERFAALYPEVEFVQQTRQASQEDQQRFLA
RFRKARNLLGFTVIGGVYGESIDMVGDSLVGCIILGPGLPQISPVNEQVS
AYFERQGMDGFAYAYQLPGWQKVVQAAGRVIRTELDKGVVILVDDRFTKP
PYPALEPQHWRPRVVRTPKSLQTALLQFWSQDSTPDDNSDVK
>HCH_02566 Transposase and inactivated derivatives
MRTAGWGKPALGGENVGPNPTDRGKKGTKKSLLVEAEGGPLGLVIAGANV
NDHKLLEATLESIVVERPAPTVEARQHLCLDKGYDNVASEDVAARHDYIP
HICRIGEEAQPADRHPSGKPRRWVVERTFGWLSKCRALLIRYDKKDSNYL
GLLQLACGLLWFRRMWRLQGRQ
>HCH_00636 Serine/threonine protein kinase
MTAIAKFTTDTPAPAFFEDATGYNSADSMLGRVLKGMYRLEYLLADGGMS
RVYVARQLSLDRLVVVKVLRSGAPNVGYIQLFYREARIASQLNHPNVMQV
FDFGATEDNMLYLVAEFLQGEVLSDLMEKHGNGLPLENVVWLIEQMAAGL
QAAHQLNIVHRDLKPGNIMVAKVSGNHSVAKLLDFGISKPLEEQDLQYTQ
MGLVVGTPGYLAPEQIDSSKDIDGRADIYALGAVLYYCITGERPFNGETH
HQIMAQQRKYLPQPLSDKELADPRNKILEPVITKAMAIAPADRYESCLDM
VRDLQLRARNAVRNSNDHGLKLVNLTTYAFIFTGELAEGAERAVVLKKLK
NKFSISDAGLKKMFSGKRIIVRKNLNLSQAKKFQSAFKSAGAIGYVEDMN
PATLVDPAHSREERAFSQPIEVDSTTLNKSLHLTRNGTSGSTSQSHSGIA
TQLPQAQESKKRTEFRIPAGVKYFCAGAAIVLGLLSASLLSPQVRYQLSD
LTAGLNGWSTPRGVNENEIRIGMSAPISEDGQAQGSSARRGVQTRFEEIN
ASGGIHGRMLTLQAFDDANQPLKSRINMQTLLSQNGSFALIGNIGAPDVL
LPAIMEQQTLVIGVQSGAAALRRNPPDRYVFNFRVGYADETFAIVRHFVD
IQEVEPSRIAVLYEDTASGRDGLAGMERALAFYNVHARDIPQFTYQPYVE
QIEGPARLILEEQSELQALVIIGNHSATAKTISRIRKAGWEGRIAVVSSA
SANALAQDLKSLEAPHTAGIIATQATPPVHSYATGVLRHRQAMRRYFPDH
KPDAQSLEGYLAASLLTEALQRAGRNFDTETMVSTLENLKDIDLGIGELI
SFSSIDHQASENVWALQLNRTGAFEPLTLTSRSW
>HCH_06999 Superfamily II DNA/RNA helicase, SNF2 family
MLVKESLIAKELGHTYFERGVKYFKQKRVTVVEYGEDHASATVRGSGDSA
YQVLVTLENGAYGLRIEGECSCPIGYNCKHVAATLLAVNERSPVAAQKDT
RSDHIPSHHPDETLDHHVRRWLDQLVDTTTEKATPDSATQVSVLFLLTRN
QMNGNVCVNVIQARILKSGAYSTRTQRYNISAAFNQSKPAAFLTKADLAI
FKRLLWSQWGSDLPLTEESGAEALQRILATERAYWETPQGPKLFKGAPAQ
AEFEWRVDREGGQTLEMVPSHLIMVATDPIYYINTHTGECGQLHSELPPS
MLMTLNRAPRLSPVQAGQVRSLLEQRLPGARLPKPKEIAVEKDTKVKPQV
HLTLGAASPSQAGYFPYRTSQADIPYARLEFSYRDIRVSYDSDIQQVTTV
KDNTHLIIPRDFLVEETALRKLRTLDMRPLNTIETYPLVDEAHQMDLSFP
SFGEWHGFAQYGIPLLEKQGWHITIEEDFPFQYINTDVEELSWYSSLDES
DSDWFDFDLGVEVDGERINLLPVLCNLIKDAPEEWELQTLADYPGDSDVL
LQVAPGRWIKLDVERVRNLLGSLIELYDHDPLVNDKFRLKRGQVGQLLAL
NEAMASVSLRWLGADKLTRLIVRLKQQEQMSHVFPPDWFNATLRDYQQEG
LNWLGFLREIEMGGILADDMGLGKTIQTLALLSVEKAQGRMDRPCLIVAP
TSLMSNWRKEAEKFAPGLKVLVLHGSQRAERFERIADNDLVLTTYPLLPR
DSEYLLKQDYHYLILDEAQTIKNPKAQATQLVHRLEARHRLCLTGTPMEN
HLGELWSLFNFLTPGLLGDDRKFKTLFRTPIEKQGDLERQRLLSRRIKPF
MLRRTKQEVATELPEKTEIQRTVLLEGKQRDLYESIRVAMDKKIRDAIAK
KGVKRSHIEILDALLKLRQVCCDPSLLKLDSARKVKSSAKLDTLMSMLPS
LLEEGRKILLFSQFTSMLGLIEAQLDKAGIEYVKLTGATKDRDTPVNRFQ
NGEVSLFLISLKAGGVGLNLTAADTVIHYDPWWNPAVENQATDRAYRIGQ
DKPVFVYKLITEGTVEEKIVELQKQKQALADNLLADKAEKFTFDEEELRK
LFAPVE
>HCH_05631 DNA repair protein
MADVESTTATLHLNRRTGEFTLSAPLDSDIVLKAAKRALAQRFKRHSCHM
DDPGKVKEYLMMHLAPEPRETFVGLFLDTQNRLIAYEVLFRGAIDEAHIY
PREVVKAALRHNAAKVIVAHNHPSGDPKPSVNDQLITYRLLQALMLVEIP
LIDHFVVGGDQVVSMAAQGIFGKRPRKLPEPAM
>HCH_02573 Transposase and inactivated derivatives
MTLIQAHRLRCSMSGKGNCYDNACVESIFHSLKVESIHGERYATLQEMRE
AMFEYIEVDYNRARLHRTNGYLSPKSYETSKIA
>HCH_04570 Transposase and inactivated derivatives
MPHDLPPWQVVYQQTRRWIDAGVFEALLHDLRELIRIADKRNAQPSAMIL
DSRTLQSTPESGARAGYDGAKRLKGSKVHLAVDTLGQLLALRITPANEQD
RDQVAALAEQVQKVTGESVEVAFVDQGYTGESAARQAEQHGIRLEVVKHT
EAKKGFILLPRRWVVERSFGWMARFRRLSRDYERLSTVLAGFHFIAFVCL
MLPTAMKALAASGVSMN
>HCH_01209 protein containing bacterial pre-peptidase C-terminal domain
MNKNTLKRAITFSVSTLALGVSAATMADVSGQDAQYVRDYLERFHADTAA
VMDEVPVKEAVNGDLAMPLFSDEAILSGEFVEDKDKLRRDLLNSTGGNGF
MMMRSMELSNDNAARLVDNGDQLIGNVHEMDNANLTQASLDVQPWSDDYW
ALYKGALGIRYADPKLNDSWPANWYDHWIFATSTHKPQEYIDAGEIDNLS
PSEKYDLLVGDSNFTLTQKMWESGKGYWDRYGSVEAWMGLCHGWAPAAYM
LPRPANSITVKSPEGKDIKFFPSDIKALGTLLWAEASPGVRFIGGRCNSK
DPGKDENGRILDQACFDSNPGSWHKAVVNQIGVSKRSFVIDATFDYEVWN
QPVMKYEYTYFNPQTGASYNSAQEAIIAMSDYTQDKFSKYRAQQATQVVG
VQMKLTYIVETSPTHRDKDYPSYDRAYTVRYVYDLELDSNGDIIGGEWYN
NRHPDFLWTPAPGAHAVSYYNPTGSSSETKSEQKAGVIEQNKWAFYGPFT
TTSSFKVTMSGDSDADLYVNKGAQPSDTTYQCRPYLEGSSEECSANEAGT
YYVGVKGYNNSSNYKLNIQYTQGASGWAKGQPIPSSWKTNAKNAAGYSQP
LTTIVEQLFNWSAE
>HCH_05994 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MKQDTQNPPTDSQFGKDDVEVISRQTGYQGFFSIQKLELRHKLFAGGWSE
PIRRELFVRGGATCMLPYDPVRDLVVLCEQFRIGALYEGSSPWLMELVAG
INEEGETPESVACREAQEEAGLEVKALRKIHHYLPSPGGSSEAIDLFCGL
VNAEGVEGLYGLPHEGEDIRVRVVSRELAYTWVESGRIRDAAGIIALQWL
QLNREQLLAEWREFL
>HCH_06395 Site-specific recombinase
MRTSHKRVGIWIRVSTEDQVKGESPEHHERRGRLYAEAKEWEVVEVYRLD
ALSGKTVKEYPETKRMLADIKTGHITGLIFSKLARLARNTRELLEFAEVF
RDCGADLISLAESIDTSTPAGRLFYTMIAAMAQWEREEIAERISASVPIR
AKMGKPLGGQASFGYQWEDGKLIPHPDEAPIRKLMYELFREHKRKKTVAR
ILNERGYRTRKGAKFSDTTIGRLIEDPTAKGMRRANYTKSTNSTKAWTHK
PEHEWVFHEVPAIVSEEVWEECNAILTTRKGTRPIAKRVRHLFAGRTYCE
CGSKMYVPSNSPKYICANCRNKIPTEDLETIFHEQLRDFFCSPDEIEHHL
SSFSNSIAAKEDVLTVLQKEREKVVTRTDKLYELYQEGGIDKRGFGERYK
PLQERLEQIDAELPQLQAEVDFLKITQISQNEIVDHAQDLYAHWDNLTSD
DKRQIVEAITDRLIIGKEEVEIELYYAPTPTPKCNSTPQNAGILATHQHG
FIAAIS
>HCH_04557 phage terminase, small subunit, putative, P27 family
MSGTATRAGRGRKPKPVAQKLLAGNPGKRQLNTHEPQFSQITNIDCPDWL
GDDARRMWALIAPELCAQKIIAITDAHNLEAFCAAYGRWRQAERELAQYG
ITITDANGGLKKNPAATVANESLKQLATFGALLGLDPSSRQRLTGGGNQD
ASNPFDKF
>HCH_03295 conserved hypothetical protein
MWVQTITRKPYPTDVSDEEWAFVAPYLALMPESSAQRA
>HCH_05701 DNA repair protein
MADVESTTATLHLNRRTGEFTLSVPLDSDIVLKAAKRALAQRFKRHSCNM
DDPGKVKEYLVMHLAPEPRETFVGLFLDTQNRLIAYEVLFRGAIDEAHIY
PREVVKAALRHNAAKVIVAHNHPSGDPKPSVNDQLITYRLLQALMLVEIP
LIDHFVVGGDQVVSMAAQGIFGKRPRKLPEPAM
>HCH_06374 DNA repair protein
MLYACVTETREVKPPVRGFTLAGCSSCSFAYHIERSYMNEDVQQHYSIHE
DGSYQFNQAIHPDKIISIAKHILDGRFFRGKAFCDPDATKYYLVLQLAEH
EQEVFACMFLDNQNRLISFEKLFYGTIDQASVYPREIVKRALMLNAAAVI
LAHNHPSGMSEPSVADIAMTKTVKSSLALIDVRVLDHIVVGSDGSSVSFI
ERGYMAG
>HCH_04569 Transposase and inactivated derivatives
MQTITRKPYPTDVSDEEWAFVAPYLALMPESSAQRA
>HCH_05052 putative exonuclease
MTLDQLTDFFSMDADVKALARWSPPSPGQALEDIRWVAADVETTGLNIKK
DVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNILIHGLSQQTLSQG
AHPKEAIHSFLSYAHGAALLAFHAPFDKAMLEKEARTHLGVSSRLPFYDV
AEWLKALCPEAPSHLRSLDDWSHYFGLYNDQRHHAACDAMAAAELALICL
QKARSLGVTTWKGLQDKIAARMKLEKMRAH
>HCH_05579 Adenosine deaminase
MNASSKPTQTDATMNDPRWRALQERDTRADGSFYYSVKTTGVYCRPSCAA
RTPRPENVRFYDSIEDAEQAGFRPCRRCRPDAPSLAARQAEKIATACRLI
AGSETFPSLDELAQCAGMSKFHFHRVFKQITGLTPRSYAAAQRKQRLDGA
LQRSDTVTDAIYDAGYNSNGHFYGESNQILGMTPGDYRRGGANAEIRFAV
GECALGSILVAQSARGVCAILLGDDPEALVQDLQDRFANAELIGDDADFE
RVIAKVVGFVEAPQVGIDLPLDIRGTAFQQRVWRALQEIPSGATASYADI
AQRIGSPKSVRAVAQACAANLLAVAIPCHRVVRSDGALSGYRWGVERKQA
LLEREAQE
>HCH_01460 Transposase and inactivated derivatives
MPRLSTSTATLFRFRFSLRALRDEDAFHQFQGFAKELQSWEDAGEIDLYY
FDESGFSQRSNLPYGWSPVGQSTRLKSYSHSKRLNVLGFMNRRQKLIFHT
TEERVDSAQVVALFNKLAESKDPLKNAVVLLDNASVHRSAEFRRHRWDWM
DKSIWPIYFPKYSPELNLIEILWRKVKYNWLPLGSHETFERLKESVTDVL
SKFGQEYKINFI
>HCH_01919 conserved hypothetical protein
MSTSSKVVRLDVSRSQQEAVKGVKLPALLIKLRDRCGEHNRKLLDRLFEQ
VDDSFFDLADKSATNSEQALFFDAMREIRLKKERIAALFMQYYNRDFQFL
EVQKPGMLKANFDPQNLTLVQEDKLEEQVAIDNMVNRFKSEIGRDLEHLT
IRLDSLLFDVSVEEENNPLGPLRMVTNFVTACAELELGIRAKLVFFKLFE
KHVLTQNKAVLEAANKFLAEQGVMPDLSASRSVRRTGVNLPHASGSVIDQ
NTGAVGDYNEGGWDPQIDPLQYMRQFSDAQMAGAAGAAVNLPVVQQTALL
NLLSRLQTTNKAPATALSDNGLINFMGLMERAVLSKEGQPRASVGRLDQD
VMNLVTMLFEFILDDRQLPAAIRAVIARLQIPILKVALLDRTFFNQGGHS
ARRLLNEMATASIGWTEKAPGEPDAFLAKLEEVVQRLVTEFDNDITIFDE
VLEDFIRFRESDKKRRHLLEQRTRDAEVGRAKSDAAKKVVQDVLNDMLAG
KNIPALVMEVLKEGWSNYMVLLQLKSGREHPDWLQAQSVAARLIQGCDPD
DTSGEAPEVAAVEKLMEELRVGLQQTAYKPFELDKTLRQLQKVLSETTQQ
RLAKEVTLDDEDMVEVETLEVASAPAVKNEDAYIQAAMRVLKTPEPPVAI
RKEQEPKPKPEVAPEQVVAVAEVEPAEPVAQAPARIVLIEEDNEEPAVEV
EADEDSLKLVDRLKIGTWVEINEGEDKKYRCKLVAIIQTTGKYIFVNRMG
VKVAEKSRMGLAIALKSGGMALLDDGLLFDRALESVIGTLRKETPKKS
>HCH_03780 Transposase and inactivated derivatives
MRTAGWGKPALGGENVGPNPTDRGKKGTKKSLLVEAEGGPLGLVIAGANV
NDHKLLEATLESIVVERPAPTVEARQHLCLDKGYDNVASEDVAARHDYIP
HICRIGEEAQPADRHPSGKPRRWVVERTFGWLSKCRALLIRYDKKDSNYL
GLLQLACGLLWFRRMWRLQGRQ
>HCH_02377 conserved hypothetical protein
MNKLSAYIEAKAAYEDLKKKIEALESDESVKKNLEFQKKLQDLMDKYGVS
KEDVVRMWKKDEKPSATDKRRGVRPLKVYKNPHTDEVVKTRGGNHKVLNE
WRGKYGKETVDSWIS
>HCH_01630 Serine/threonine protein kinase
MKVCPICSTDFPQGDYCPADGATLVDKQRRDPLIGKMLKDMYRIESRLAE
GGMSLVYVARQLSLDRLVVVKLLRAGMDDHDFIQLFFREARIASQLNHPN
VMHVIDFGNTDDGMMYLVVEYLRGENLSDLVEKRSGLPLENVVWLLEQIG
AGLQAAHQMNIVHRDLKPGNIIVARVSGDHSVAKLLDFGISKPLGEGDLK
YTRLGMVMGTPGYLAPEQIEGARNIDKRADIYALGAILYFCITGERPYTG
ESPQDIMNRQCAGPPPALRENRLTDARNKALEPVILKAMALRPDDRYPDV
QAMVRDIQNRAHAGIAEYSKAMEMAPPNPDVYQFIFYGEIRGDVELQDTQ
EKLKAALGLSDAACARLFSGKRVVVKKHLSLGKAKKYDEAFQAAGALGQI
EEMDTATRIDPAHSMDERSMSQPIVVAASTLAEPMHLGSQPPPFGVQGYT
HPVAPVLDDEGDTTIAPQGTPPPFPAAAIKPESAGGRSRLRLWSVLTVVL
LLIGVGYAVPVVRYSVFDWGAELAGWQAPRGVSEERVSLGMSAAFSGGAR
ELGRAMQLGVDLRIREINEQGGIHGRYIELRALDDGYEPVAARHNAERFI
QPDGVFAMLGNVGTPTAEAILPVALQDRTIVFGTFSGAALLRKSPPERYV
FNYRASYEDETSALIRYFVEEKEVDPRMIAVFYQDDGYGLDGLKGVEDAL
SDYGVRPHEIAKFSYQRNTAQIEGAAQGMLGRLSDIQAVVAISTYTASAR
MTKRLRQAGFTGPFANVSFVGARALAEQFKELGAEYGEGVIVSQVAPPYD
SYATGVLRYREALSRFYPNEQPDFISLEGYIVATLFFHALEKAGRHFDTE
SLVNTLESFDGVDLGIGETITFRASNHQGSHRVWGTQLNRDGAFEAIRLS
KKETL
>HCH_05237 Ribonuclease HII
MKKLTSQISLFDHETGQLVAGVDEVGRGPLAGPVVAAAVILNPEKPIEGL
NDSKKLSHRQRVALSQEIREKALAWATGWATVEEIDQINILQASLLAMQR
AVAGLQVAPDLALIDGNKIPKLDMPAEAIVKGDSKVAAIAAASILAKVER
DEELDRLDVIFPGYGLAGHKGYPTAQHLSALRELGVTDIHRRSYKPVQQL
LQGD
>HCH_05871 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MKAVHVAVAVILDQHNKVLVARRPEHLHQGGLLEFPGGKVEPGETVLAAL
QRELFEEVGVQLDISEDATHPLIQIEHHYPDKHVLLDVWRVSRFSGEAQG
REGQFVAWLDLNELDPEAFPAANREIIAALRQAN
>HCH_01579 hypothetical protein
MDILATRVYGKDGSHTADESASRSNTRNGQSETASPLQLSAEIYGILTVA
LARHLGPVSTHLIRNAASHSRSLPEMIDTLSLHIPKGAERDTFLDRAHRN
DVMTHPGRSMDSTARQKAAAPAANRLKPKYKSSVGTALSEEKLQRLTQLL
SRYVGPLAGCIVRKCREESPTEIKLYQAMAECIPDEHERTQFLNKVRLRS
Y
>HCH_07061 Transposase and inactivated derivatives
MTDRKGALQALERCKPGLNRVQSLLCDSGYTGEPLAQGVRDILGEHVTVQ
IAKRSELHTFKVMPKRWIVERSFAWLDKNRRLWKNCERWLNTSLQFVHLA
CLVLLLRRS
>HCH_04432 Transposase and inactivated derivatives
MKCSHNKRNHFSPSGSDRLTGVMKRLIKDARHKVFLILDNLRVHRAKVVK
AWLEENRDHIEVFYLSAYSPELNPDEYLNCDLKAGVHGGKPARKKGDLKK
KNRSYMCMLQKKPARVKKYFNHPSIKYAA
>HCH_02835 Transposase and inactivated derivatives
MKDLQSWEDAGEIELYYFDESGFSQRSNLPYGWSPVGKPTQMKSYPHNKR
LNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPLKPAVVLLDN
ASMHRSAEFRRHRLDWMDKGIWPIYLPKYSPELNLIEILWRKVKYSWLPL
DSYETFDRLRESVNDILSKFGQEYKINFV
>HCH_04017 hypothetical protein
MGGNALKDHGAQRLSAAEALRIGEKARRAIQALQSNDGAPVRAEIVTAYR
NKETYGDIDMVVSDSVKRDFGNASMSELLGNVLGGGQPLPFIANGGVASF
GAPLEQGGVFQVDLLYTPASQFDFALSYFSWNDAGNLIGRVAHKMGMKFG
HNGLWLPFREGDYLFTEVLVTRDFDKAVRFLGFDIARWRQGFDDLIQLYQ
FISASKYFDKDIYLLENRSHNARVRDAKRPTYTGFLKWLREAYAGDDFKD
WPACKAAWLPQIFAAFPEAEAEWRVAEADLSRQREIKRKFNGELVSSLSG
LTGTELGALMQQVRHSFMDKNAFESFILSASESEMEKLVAMQKSLLEGKT
>HCH_02575 Transposase and inactivated derivatives
MSAAARQLGLHESQLSNWRHKERLTQERGETEPQLAQENARLKRQLADQT
KELAVLKKTAAYFAKYVK
>HCH_03958 Retron-type reverse transcriptase
MSEEKKLTRQEIYQRIRETSKDEYILSEMVRLGFWPDNSEKPTLSEAFIK
KRTELQAALRELGQQQMLYSDPEKALKEMHKQRKQAALAKREETRRKRNE
ERFQRAQHWREVQAHQITYLGEGVSGGLEDATADEARLRSQNLPIINAAE
ELATAMGVTLNELRFLAYSKEVSKLSHYQQFAIAKKTGGVREISAPMPRM
KRAQYWVLDNILAPLTLHEAAHGFVVERSIVSNAQPHVGKDVVINLDLKD
FFPTVSYARIKGAFRHLGYSEQIATILGLLCSQPKTQEVEMDGQKWFVSE
GERFLPQGAPTSPAISNVICRKLDRRLQSMAAKLGFTYTRYADDVTFSAD
GKSDDDVKRLLWRCRSIIKDEGFVVHPDKTRIMRKHRRQEVTGVVVNDKA
SVERKQLKRFRALLFQIDRDGPAGKSWGRGELFAAIDGFANYVAMVNPVK
GVPLQQKVAQLKLKYGVKVKPSRVLALNKKRMRLKAAKGEAPREDWWQAQ
ASAAPELEKTAEQVKEERKAEKAEQQTQAVPAASSADPAPVRTSTPVQSQ
QQAQPSAPAPEGESHAKTGWIMLAIGILIYLAMKMLG
>HCH_06947 conserved hypothetical protein
MQNLRLAWTYKISRSIVRALAYRLALTELDLQRYLSAHFPIETKRYLLGV
RLHDPWVRLDDARNRIAVGARVELQLPGGFISTGVVEMEGVLSYSQQDGA
FYLFDPQITDLQLHPIPSRYLKPARAAVRIALSRYVAGAPVFQFRMDSLR
HRLARSLVKNVEVRRGKLRVCFRSSQQNCET
>HCH_10021 DNA G:T-mismatch repair endonuclease
MDAKTDVLTPEQRKLCMSKIRGKNTKPELLLRKALWSIGLRYRLQGKITG
RPDLIFSGPKVAVFVDGCFWHGCPEHYRTPQNNQAFWKEKLRRNMCRDKA
VNRILVDNGWLVVRLWEHEVKSDLECCVSRILAALRKQAG
>HCH_06742 Retron-type reverse transcriptase
MRYDRWLAARLADAYQSGAPTVREMQQRAVVTLGEQPTWLASLTRRMWRR
FQQGWEGASAYALSEAILADRGFQQGLAVSARPVQVRHIFLPPPRALPPD
SLASQYGLPALRCAGDLMHWLRLTPEDLDWLTQARGAPRKAASALGHYTY
RWLDKPRGGARLLEAPKVWLKGIQRRIYQEILAPLPLHEAVHGFRAQRSS
LTHARVHVGQALLLKFDLKDFFPSVGYPQVYRVLRRLGYGHEVTRLLSRL
CTQVTPNEILRSPAARHLERGEELFRRAHLPQGAPTSPALANLVAAHLDR
RLSALADSMGRRYSRYADDFVLSGALMSPGAIERLQALVGAIALEEGFVL
NTRKSAVIGQGARQQVGGVVVNAKANISRKDYDELKAVLHNCLRFGPDGQ
NRQGHGDWAAHLRGKIAYVAGINPQKGRKLLALYQRIIWPQESA
>HCH_03805 Superfamily II DNA/RNA helicase, SNF2 family
MSEHTFSPGSVVTARGREWIVLPQSDARLLHLRPLGGGDDAITALLPELE
PIHSASFPPPQVMHSGTQAAGLLLRDALMLKLRAGAGPFRSFGNIAIEPR
AYQLVPLMMALKLETIRLLIADDVGVGKTIEASLIVREMLDRAEINRFTV
LCPPHLCEQWHEELKERFHLDATIVRSTTAARLERGLLQDRSIFTEHPFT
IVSLDYIKNKTRRDAFLLHCPEFVIVDEAHTCARSGMGPHLRYGLLKDLA
ANEARHMVLLTATPHSGDEEAFYNLLSLLKPEFVDLRTIDNAAHPLRQAL
ANHFVQRRRQDIGEWKEGNLFPDRLTSEATYKLTGEWNAIFHDVLEYARE
LVSRESEGTFKARMNWWAALALLRCISSSPQAAIRALNTRLDNTLSPDGK
SPDEEDQRCHIEALNEKGALSVLDGTDDNLTLDDVEPGAAQEEDVAILKR
LIERAKHLKSGNDPKLQTLKQIIKPVLDEGYNPVIFCRYIATAEYLADEL
NSAFPQREVIHVTGDLTPTERLERIEQLKESDKAPLLVATDCLSEGVNLQ
EQFNAVIHYDLSWNPTRHEQREGRVDRFGQKAKNVKALMYYGEENPVDGA
VLQVILRKAESIRKALGVTVPMPEEGDRAEQALMKAVLLRSGNYIGSKGM
DDLFAQDADLQALDAKWESAREKARRHRTLFAQNRLKPEDVLPEWEKAFA
VLGTEEDVKRFVLNACERLGAPLKSLKQGGYQAPLPHFGEKHPGLRDRLD
AAGLLALKHIDFYYPSALKAEFIHRTHPLVSHLADYLAELAMSGEDTKLI
ARAGALYTKEVETRTVIYLLRIRSRLILKRTLHECDLLAEEALAIAINAD
NQASVIPKDQALKLMQASVSKDMCKEAKERELAEELNQLEEKQPMFRSLA
EARAKQLLADHRRTREAAQAKGSYEVKPQFPVDVLGVYVLIPDLKLF
>HCH_00834 conserved hypothetical protein
MRHIRNLSLLLFSLFALSWSHIATADITDLDEAINKAGRQRMLSQRIVKS
YLLIGQDIQPDKSSSQLTESVALFEQQLGELESYTKTPQISGQLKSVRKE
WKEFRKLATEKPSKDKAVELISAGERVLALSNKVVQSLEQQSGNPKNKMI
NLAGRQRMLSQRIALYYSALSWNLDQADLQRSFAQAVQEYDEALHELRQA
KINSQDINAALDKVISQWSFSRSGFQLMQGQSFVPFIIATTTEGMLKNME
TITGLYESLQS
>HCH_05817 Serine/threonine protein kinase
MIFASDLSLSVDQHSIAGVKPRNEDCIGVRIPDRETLQLKGAVAVIADGV
SAAEAGKEASEACVTNFLSDYFCTPDSWSVKNAAQKVLQALNRWLYGQSL
RTLNDDKGYVCTLSILVLKSTQAHIFHVGDSRIYLYRNGELEQVTTDHTA
RVDAERTYLARAMGFSPNLDIDYRVLEVQAGDLFLLSTDGLHDFVPHSQL
RERLREAAQTPFQGLAADLLQTALQAGSDDNLSCQILRVDSLGLRDADSC
CRELSRLPFPPPLEVGQSLDGYRVDRILHESARSQVYQVTDMETGERAVM
KTPSLNFVDDPAYIERFTMEEWIARRVHNPHVAGLVPCKRARSCLYYLTE
FVPGAPLSRWIRDNSRSDIHRVTRILEQIVKGVRALHRKETLHQDIKPDN
LLIGNDDHVTLVDFGSCRIPGVEEMYLPIERERALGTASYSAPEYVLGAK
ATTRSELFSVAVIGYEMLTGHSPYGEAYEKAASPTALAKLKYTPAYHHNP
MVPVWMDGALKKALQLDPRRRYDSFSEWLQDMTYPNSRLMPDSALPIVER
NPLAFWRTLSGILLLTQLATLLWLLHLLR
>HCH_02188 conserved hypothetical protein
MPTLLNKLFKPKWQSNNPQTRLDAINELDWNIPEQRSILEQVIAKDSEAE
VRQAALKKVIKIEDLLTFTNDKDKVVRDASKARLQSLVQGASSNFDSFVA
QNLKHASDELLFTILGAINEETQLPAFLQALADNNSPMLEKIATEHHLSK
VRMKAADHIQEPSALERLAKVAKTKDKGLFQLVKGKLKQEKDQEKQEAAA
HQEVEAFCLTLENHAKTDVTRYYPEKLHALERTLQTLTPARFVDLQQRIQ
VALDTCRARAKAMEDEAKATAHEEAQTQELQSERDATCSELENTIEKLQA
APLSTPSELSALDALIKTQENRWLEATRDHKVSKHEQKRYQAAMGEIRHY
YSCLHRLSNLHGELDATIQQAEEFKEKGDSESKESRHTLKKIRQVVDEVE
WPSGYQRPALLSKAAELMGEIHTIQAQHVQDQKRLKQDVQKNIQQLSDAI
DEGSVKRALKLNKDIARTLERLPAKIAHDLTARFRLEQKRLEDLKDWQGF
ATRPKQEELCERMEHLADQHLEPHLKAQRIRELQKEWRTLGGSSDQSLWN
RFRDASEKAYEPCREFFSEEEKLKEVNLNKRQEIVHQLRSFIESADWDAP
DWKMVDKINRKAREEWRQYYPVDPQHGKQAQKHFNELLKSLDERLSGEKA
RNQAIKADIVKRAEALIAEEDIRTATHQAKALQKEWQSAGITDHREDRRL
WSEFRRACDQIFGRLNETRQKHHEEQQHNVQRAEELVTAAIALAEHPDDS
TESALASLTEAFSDLGHLGDHGKELHSRFKNAVRTCRKALEQRARSSYIH
YWSGILDNGAHIRTLTEAQSVEWPTELDELQAPHKTQLENALSQFAQTGS
LNEISLDEARDLVLTAEILAEMESPAEEKTRRMQLQVERLTAGMQQSTPL
ESPISKFEQIVLQWSTAKTEDNDAAQNLDKRLRTALEGIVAKLQPHPPRD
>HCH_00032 predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
MSTLTPIVWLNLTTIPSLGDSRLALLAQHFEESSQIDDFQLGVSSSLSFS
SELWRAIEKVIAHGDRPVNAQAANALRWSEQPGNRLFLLPDADYPSLLRL
LPDPPAVLYARGRHELIHQPQIAMVGSRNPSVHGQETARQFARSLGESGF
TITSGLAAGIDGSAHAGALGTLGATIGVLGSGLNVIYPAKHRDLAQKMME
SGLLVSEFPPDTQPRSQHFPKRNRIISGLSLGTLVVEASLRSGSLITARN
ALEQHREVFAIPGSIHNPQARGCHHLIKQGAKLVECTDDILAELPALMGL
YRSLNEPWTTVFAAEEFPGQQSQPEPASLRPLSEQAEAVLKGMGYDCTPP
DALVERTGLSIAEIRSVLIELELEGWVQEVAGGFIRNAR
>HCH_02859 putative exonuclease
MDPLFLDTETTNLDDTAEVVEIAVTNRHGTKLLNTLVKPQGPMSAAAQNV
HQISELELKGAPSWPITYPRVYKLLYKRPVIIFNADFDVRILRQTCNAWA
LPPIPFTPLCAMRLYAEFHGQWSEKGQFKYQSQARALEQIGHPAAATSLH
RAAYDAQMTSEIIYTMATGIKPLRAA
>HCH_01879 group II intron-encoding maturase
MKTEAIRMGQGIQGDVGRYPAETEARVEADTGAHSWTNAEPNTLMEQVLE
RPNLMHAYQRVMSNKGAAGVDQMPVAALKGHLQQHWPTLRERLLAGDYHP
QPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHSYG
FRPGRSAHQAVRAMQRHINDGHRWVVDLDLEQFFDRVNHDVLMGLLARRI
ADRRMLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDR
ELERRGHRFCRYADDCNIYVRSERAGHRVMTSITHYLKMHLRLKVNAEKS
AVDRPWRRSYLGYSVSWRKQVRLRIAPKSLKRYQAKLRQLLRQSRGRPLQ
TTIARLNPALRGWANYYRLTTSKRPVEGLDGWVRRRLRLLLWRQWKRTYT
RARNLMRLGLSEQRAWSSASNGRGPWWNSGASHMNAALPKRMFDRLSLVS
LLDTMNRLQRQS
>HCH_06865 conserved hypothetical protein
MSNPDRFQQFFSTDCPQFFRPLTSKYREMIVECLRLLYQRFYSSMADYGH
ALKREQMVEIFQTALTRAPELETDEDSETEGRFRTDRDKALWILNTLIDY
GWLEVQVDEVTLQSSYHFSRKGRLFTQPFLELSGASVRTRHRNTRNTRNA
LRAFIEAGEVHDLLDAYEYSERIISDFTDIITELEDRKRQLVKEIEITAL
IKRASDEFFDFMDKRFQPDLSVRLSADSVEKHRDEIMSQVRQIRRLPKET
KAHAESELRRLLPDRVVEGQSLLWLLLDNIEIRLTNACDIMLPALRSALR
NFTRRADIIIRQMSYLASQRHNDMVQICQELTELPAEEQRARLERAGALM
ANLNVGLIDPKQISLREGRRKITVDSRVLNDEPLDQGARKELFIQHALDQ
AFVINDDRTRQYLIQALRGGQRIQTKHLPINAAPDLLAAMHAVELGSVSG
LSSEYEFVVEPTGDLVSNEYLLQADDFIIEVRPKKAMQDTL
>HCH_00551 predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)
MATVVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEE
WKPALVIVGEPLNMDGSVSEMALRARKFARRLHGRYNLRVEMADERLTSS
EAKSMVRERYGQRDFGRFAVDSIAAVFIVESWLEAHADNLDAFLHPPRKQ
GKSNDIID
>HCH_05476 Transposase and inactivated derivatives
MRTAGWGKPALGGENVGPNPTDRGKKGTKKSLLVEAEGGPLGLVIAGANV
NDHKLLEATLESIVVERPAPTVEARQHLCLDKGYDNVASEDVAARHDYIP
HICRIGEEAQPADRHPSGKPRRWVVERTFGWLSKCRALLIRYDKKDSNYL
GLLQLACGLLWFRRMWRLQGRQ
>HCH_06389 Site-specific recombinase
MFQALEKGKAHGVIMHKIDRGARNLKDWADLGKLIDSGIEVHFANENLDL
QSRGGRLSADIQAVVAADYIRNLREEVRKGMYGRLKQGFYPLRAPIGYLD
NGSAKAKTICPKLGPLVQEAFERYATGSYTLFSLLTELSKRGLVNRQNKP
LSLNGISCLLQNPFYYGLMRIRRTNQVFQGNHEPLITKALFDRVQEVMRR
PLNSKRPVKRIYALQRLIRCKNCSYGLYAETQRGIAYYRCHTKACAGTCI
REDVVLRIIAMTLRARGIFRKGVLKAFAEEFTFVINELNRDVESQRGYLK
LRLATLKEQEVRLTDAYLDRVIDEVMLQDRRKAIIDERLDIDRRLHELQQ
KTVFEDRERIFLEQVNSLKNIDKLKPSDEIRVILKSAISNIEIQRKNVEI
TWDFPMSAVFNDRKFYYGEQRPICYRRFTWTKERVQVAARSILLGRDVWK
EDGGA
>HCH_05903 Mg-dependent DNase
MAIFIDSHCHFDFPDFDDDREDVLRNAWGLGVRRIIAPSVGIQNWTRISQ
LAKSFDELNFALGIHPLYLHEHLELHLDELDNQLREQRADVSAVGECGLD
ATADIDFDVQLYFLSEQLRMAKALDLPVILHSRKTHSQLAKRVKESGVKC
GVVHAFSGSYEEGVQFVKLGLKLGVGGVITYDRAQKTRKAISRLPLESLL
LETDAPDMPLCGRQGRRNSPEMIPQVFNVLCALREEAPERISDTILQNTI
DTFDLPGFESKP
>HCH_00081 conserved hypothetical protein
MIECKVKAGFFVLRPCEAPSAMTCSICSRPMCLRHSMTVEGELLCTECAA
VQGDSDTGDDEGYMEDDAYMDDDGGNSARWFYYYRQHYYTETGDADMLTQ
DHGFGADEVAAFVGAADMLDMQDDLGGDDDSADLFDS
>HCH_04096 Transposase and inactivated derivatives
MERRVELPLPFLSQSCSDRLEGQGRTRHMDAARLTGFMKRLIKDARRKVF
LILDNLRVHHAKMVEAWLEENQDHIEVFYLPAYSPELNPDEYLNCDLKAG
VHGGKPARKKGDLKKKIRSHMCMLQKKPVRVKNTLITQASNMRLGMPISM
PR
>HCH_05359 Endonuclease I
MAGLLNVTHAQTKFNDPKQTLKEEFWGKLYADGGKTFFCKKEFSKKSILV
TESYIYSSLWIRDNLECGTPRQCRENNEAYRRMASDLHNIYPEDARFELE
RRAAKFEELGNEVKADECGIRQVFGIIDPPDDIKGDIARSLLYMHTTYNL
PLYGNLDQLKRWSRADPPTPEEIARDIQIRELQGNSNPFITHPESADRVT
LNR
>HCH_00603 Transposase and inactivated derivatives
MKYVNHLKPAEIKTLTDGFRYSPSSRFRIRCHAILLSNKGYKIDKIADII
DFHRNTISIWIEQWESMGICGLISDASPGRPPIYTEQEQEKVCKWIDEQP
QQLRDVQIRLEKETGKSASLETVKRNLKKIKV
>HCH_05099 conserved hypothetical protein
MNTVNPTNNHNVNPYETTSETTPTGDPKNASKFDDTNMDPFTRIMLLQEE
RVGLLDGQVKSQSERMQSINTEIKDYGKTISMVNDKSASLKKGEDKLTLT
DAEVNELKAKGVDVKGNEVSKDQLNSFSETLKQKRDGLNNDSQMEMIRLQ
GLINKQQQAYQLMTNIQKKEHDTIMATINKIN
>HCH_05625 Site-specific recombinase
MNDAVKRRLRCAVYTRKSHEEGLDQEYNSIDAQRDAGHAYIASQRAEGWI
PVEDDYDDPAYSGGNMDRPALLRLLRDIEAGKIDVVVLYKLDRLTRSLTD
FSRMVEVFDRHNVSFVSVTQQFNTTTSMGRLMLNILLSFAQFEREVTGER
IRDKIAASKRKGMWMGGIPPLGYDVKDRRLVPNEREAKLVHHIFRRFSEL
GSSTTLVKELRLDGATSKSWTTQDGRFRKGKPIDKSLIYKLLNNRTYLGE
LRHKDQWHQAEHPPIIDQELWEHVQAILSKNGRARAASTRAKVSYLLKGI
VFGYDGRALSPWHTTKKNGKRYRYYIPQRDAKEGAGASGLPRLPAAELEA
AVLEQLRGILRSPTLLREMAPVAAGIDPELDEAKVAVAMLRLDEIWEQLF
PVEQSRIVRLLVEKVVVSPNDLEVRLRMNGIERMALELQPSINSSHEGAA
A
>HCH_03092 Site-specific recombinase XerC
MSAPDFPAFPLFDAHREFVKLPLGLAMLDNYPDSRQFLAKLKETVPGVNE
DFISAQRFLKSYSRKSEKTFTSFRNEVERYLLWSWTVEGKAVSQLRRSHI
ENYFDFLHAPPAGWIGTGTVRRFEYIGGQGMFRSNPLWRPFVMRDTARSM
REAKQDEKDGTTPKKSDKKDILQPEKKGYRLSNSATALAYSAISVFYDHL
VQEDIVLGNPIPGIRKASPYLIKDAQVKQIKRLSELQWEYVLETLKEKAA
EQPNYERTIFIIACLKSLYLRISELSDRPKWTPMWEHVWKDHDGNWWFKA
FGKGLKIRDVSVSSAMWEYIRRYREHRGLTASPSPGDKEPLLQKMRGGGG
LTSRQIARLVREAFELAYHRMMKDGFENDAKELRKATTHWLRHTGASQDI
ANRPLKHMADDLGHASMGTTDRVYIQSDMKERAATGRSRKV
>HCH_07044 ATPase involved in DNA repair
MILKSLYLQNFGVFQGSFDDNHVDLEPRVKYNRKRPIILFGGLNGAGKTT
TLTAIRLALYGKQSLGRSVSVQIYHQFLVDAIHKPKGKVLAPNTAGIKLD
FNFGRQGEVIDYTVERVWTVRGKSVFENVEIYQNDEHLKSLTDHQKQAFL
NELIPIGVADLFFFDGEKIADLAEDNNNSALADAINRLLGLDIIDRLKAD
LGVYLRDRKRDKLPSAIQKEMEALENSYKSLYSKYQSQLADIEALRIEST
ELETTKERLNQIINDLGGAWASNRQEAETKEKMLRAKRNELQVQIRNLIA
DAAPLALATNQIAALLKQLTDEQQSKRQLVLQVELRKQLNKIQSALIKSL
GKEHKKAIETSIEESLPAATSIDTNIIHDISDSEFNRLNHLITKVVPEQQ
AKVKALSSELEEVEEELAHVGLNISRAPDERRISNFVSELGEIENSLGQR
QVEIKQRTEAAKATLREAMDSLRKLREKEKEFGNVTNLDQAVTLADRTRG
LLESFSSKSRETRINTLEQEFIKSFAKLARKDDLMITAKIDPETFSVSLI
DGTGHIIDKKKLSAGEKQIYAIAMLEALGRTSGRNLPIIIDTPLGRLDSH
HRENLVKNYFPTASHQVLILSTDTEVDEDFYKELSPEISHAFEVAYDPEA
GSSVYYEGYFWRH
>HCH_00401 putative exonuclease
MNIGLELFKEWLTSSRVVVLDTETTGLDDQAEVIEISVMDMRGNVLFDQL
VRPLNPVPPEAAEIHGVTNEKLANKPNFPDVYISLWRAIGGRTVVAYNAD
FDRRLLKQTCAAYRLPMIEANWQCAMNAYARYRKEPDAKRGGYRRQSLAK
AAAQMGIEVYGAHRAVADCFTTVEVIRAVAALSEPAHHNTNL
>HCH_05639 Transposase and inactivated derivatives
MRTAGWGKPALGGENVGPNPTDRGKKGTKKSLLVEAEGGPLGLVIAGANV
NDHKLLEATLESIVVERPAPTVEARQHLCLDKGYDNVASEDVAARHDYIP
HICRIGEEAQPADRHPSGKPRRWVVERTFGWLSKCRALLIRYDKKDSNYL
GLLQLACGLLWFRRMWRLQGRQ
>HCH_05611 Transposase and inactivated derivatives
MKSYPHNKRLNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPL
KPAVVLLDNASMHRSAEFRRHRLDWIDKGIWPIYLPKYSPELNLIEILWR
KVKYSWLPLDSYETFDRLKESVNDILSKFGQEYKINFV
>HCH_05712 Superfamily I DNA and RNA helicase
MRMPNSRQISDEQETIYLDAPMSGNILISGPPGTGKTVLAFLRAGTLLKR
KRSVTVLMYNRVLQKYTSNAVEVDGEAVKTCTLHSWLFKWWKTNKIASKV
SYPGRVYLDCPFEEKAAAKGLGAQWDNYEKKWWISHELHQQIGQRFSQWI
NDKSDQSIFPPRLAPFLYDWEKMSISLVTHPMREYPLTDWGHLIVDEGQD
FPPEMYHFFKRVSLVLNDVNLTILADENQRLTENNSTLNNIKEELSISKE
NEFLLTKNFRNTLQIAKLANCFYVGLSTGCPLLPDRHGDKPLLISSTDLD
GQISHIVKVLNSRSPAEVGVIVPRDSIRKEVVAKLEALIGDRYSVQTYSS
NQDEAKDPNDLVFDQVGTVTVLNYQSCKGLEFDIVFLPELQDYQVDNSEL
DNFKMNMYVMCSRARDALFLTYSSHLDEKPDILTHLPVNETDILESISWQ
NHSQ
>HCH_05910 Transposase and inactivated derivatives
MIIDDARSLPAAAQEEKRKQAVRLRKQGYSYHEIADKVGVHNLTVGKWIR
AYEAHGFSGIKSKPRGREPGSGQRLTLTQENRIRLLITDNSPDQLKLEYA
LWTRKAVQQLIAQETEEQLAIRTVGNYLAAWGFTPQKPAKKAYEQNPSLV
EKWLKEDYPVIKGRAKAEGAEIYWGDETGLRSDAQHGRGYAPQGKTPVIR
LNARRESVNMISAISNQGKVRFQIYDGTMDADRLTGFMKRLIKDARRKVF
LILDNLRVHHSKVVKAWLEENRDHIEVFYLPAYSPELNPDEHLNS
>HCH_06696 conserved hypothetical protein
MPSMRTFSSVACGASRRCVTAFHVVFLSRWRWALIALFALLTAHQPAFAR
DPCDAISLLEQQWRVRLAESQRDLASFTALRRGEVEPGFQLSHLTPVALD
DDSAVEDYIQVLRSDGYLPMSPPGLDQCARLAKSMQTLRAELTAQLTQLR
DARLTLFTQSADIRWALQRLLLKLERLQPLTAELTQRQAGAQNVGPDAPG
AAQTPASPETGKTATEAEAQAEAVRRAAAVERLTEMSQRAQALLAELSAH
LYADASFGTLETLWPQILTLSGNPVRELAAQLPDLQTRPQTLAEAIEVLR
VQATYLRNHRIAADGMRAAMRTWREPQREWTGLRQELVMLPEMTLNALVG
PVVEEYQLARERQKLVTLLSLWSLQVILLALAAWLVARAAAWSMQALSQL
QRRLLRLLGQTAAMRLVNGLFWVLKPNAPWLMIWWLSVTLSNLSPSHWYL
FHLLRPLGVAYALFRGIRVMSEWLFSRMYGQSGFFVTQQTGDQLRTEAGR
LAVSVVVCWALREMALATGGGYVYFIVQSAVILYLWCLATLSLRRHGDVC
RKFICRLSTVNSRESCSLLLDRPWIFPWWPLLFIAAQVWDLLLRLHLLLG
QFDAYRSLSVRILRLHLETATGAETEGEDAEADEYQARSYRYWMLDRPRE
EQAVIAQEALLATLTKPVTDWAEKQREDNMLLLVGEHGGGKTSLVSQFEK
HWDKTPVRFLSAPPKLTSAEAVKAFLTDSTALSDGDSMADKAAAPSAQKK
VVIVDQAENFLLAQVGALDGVKAFLQHLNDASPDTFWIVVMHAPTWRYLS
RVFQKHHQFSHIIAMPKWSPTDIRKLLLSRHHASHRRLRYDDLLLSALAG
TESASFKAADTRVFNLMWELSAGNPLTALHLWLESARFDHRTVEIGIPQR
VATSVLNALQDDECFMLAAVIQHENLTPQEIAVATTLPLAMVRQTLKSGC
AAGILWGDERDRYRVHALWYPALTTYLGRKNILHG
>HCH_04814 DNA recombination-dependent growth factor C
MLFKNALIYRFTKPVPWPLEDLETGLSEHAFTPCQANDTYRLGWVPAAPL
VSDALVYQQGRYLLLTLKREEKILPASVIKEEVEERAQEIEEREQRKLRK
KEKNELKEQVITVLLPQAFKRSRLMSAYIDLDKGLLVVDTSSGTRADEFT
SFLRQSMGTLPIRFVALNEAPAVHFSDWVQKDSTPTPFVSGDNCELRSGD
GSDTVIRCKGTESLTDAISTHIENGMQVTQLSLEWDEKLSFAVGDDLKIK
RIKFMDTLQEQLKDGDTGEAAERFAADFSLMTLEFSRMTDDLIKVLGGED
LSAVIQE
>HCH_02816 uncharacterized protein predicted to be involved in DNA repair
MTAIANRYEFVFLFDVTNGNPNGDPDAGNLPRLDPETNHGLVTDVCLKRK
VRNFVALEKSDMNGSAPGFNIYVQEKSVLNNQHKQAWEALGIPPDAKDKY
KKLPKDEAKARELTAWMCNNFFDIRAFGAVMTMEVNCGQVRGPVQFAFAT
SVDPVTPLEISITRMAVTNERDLESERTMGRKHIVPYGLYRAHGFISAKL
AERTGFSEEDLQLLWRALINMFEHDRSAARGEMAARKLIVFKHEHPMGDA
PSHVLFDKVKVERSEGEADTPARSYNDYRVTVDSESIPVGVCVQELL
>HCH_02355 Transposase and inactivated derivatives
MRTKRYPSDISCEQLEKIQPLLVQARRKTKPRTIDLYEVFCGVLYLLRTG
CQWRALPSDVPKWRTVHSYFAKWSEPA
>HCH_04571 Integrase
MKNAMDLALLTLQRREDISKMKFEDIKDGYLYVIQEKTKKHDTGYLRIEI
GEQLQEVLKRCRTDIPSPFIINRRPQRKFKRIKSKHWTQVLPDMISREFK
SIRDSQVGLYENYQEGEKPTFHEIRALGEKLYKDQGKDPKQLGGWASEKM
VKNYDSGHS
>HCH_00091 group II intron-encoding maturase
MKTEAIRMGQGIQGDVGRYPAETEARVEADTGAHSWTNAEPNTLMEQVLE
RPNLMHAYQRVMSNKGAAGVDQMPVAALKGHLQQHWPTLRERLLAGDYHP
QPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHSYG
FRPGRSAHQAVRAMQRHINDGHRWVVDLDLEQFFDRVNHDVLMGLLARRI
ADRRMLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDR
ELERRGHRFCRYADDCNIYVRSERAGHRVMTSITHYLKMHLRLKVNAEKS
VVDRPWRRSYLGYSVSWRKQVRLRIAPKSLKRYQAKLRQLLRQSRGRPLQ
TTIARLNPALRGWANYYRLTTSKRPVEGLDGWVRRRLRLLLWRQWKRTYT
RARNLMRLGLSEQRAWSSASNGRGPWWNSGASHMNAALPKRMFDRLSLVS
LLDTMNRLQRQS
>HCH_01333 Transposase and inactivated derivatives
MKDLQSWEDAGEIELYYFDESGFSQRSNLPYGWSPVGKPTQMKSYPHNKR
LNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPLKPAVVLLDN
ASMHRSAEFRRHRLDWMDKGIWPIYLPKYSPELNLIEILWRKVKYSWLPL
DSYETFDRLKESVNDILSKFGQEYKINFV
>HCH_02244 hypothetical protein
MARCKYRLQISLALILTTYLSAGCSTTNAVESNNKKGQIQLFLQDSPPNE
SELYADWAAYLNDFKSTEGDNLSVTRALHASPALDNINLNGFKEKYSTLF
VISDRTCYLYTGPILEPAVYDFIHRVSAQQEIPEFLIQFSPEALKGRLTI
DEYSVNCQ
>HCH_01181 Transposase and inactivated derivatives
MKYVNHLKPAEIKTLTDGFRYSPSSRFRIRCHAILLSNKGYKIDKIADII
DFHRNTISIWIEQWESMGICGLISDASPGRPPIYTEQEQEKVCKWIDEQP
QQLRDVQIRLEKETGKSASLETVKRNLKKIKV
>HCH_06273 DNA primase (bacterial type)
MASLIPQAFVDDLLSRVDLASLIAERVNLKKSGATYQGRCPFHDEKSPSF
HVYNENHPAHYHCYGCGAHGDAINFIKETEHLSFNEAVEQLAKRCGVEVP
RDKVAEQKVSQNKSLYDASSHADSAFRQALGNHPQRGVAQEYLKRRGISP
EMADLYGIGFAPAQRQFLSGTSDRSLVKALSTLRLVIEKEQDRFDMFQNR
LMFPIRDTRGRTIAFGGRTLGNDRSKYINSPESPIFHKSNVLYGLWEARK
QSRKLEQLIVVEGYLDVISLAQFGVVNAVAAMGTATNEDNLSHLLNTSQD
IVFCFDGDKAGLAAADKALNNLLPMFQDGYKVSFLILPEGEDPDTFVRNE
GADAFRERIANATPLSEYFFQAMSRGLDLSIAENKGILSTQARAALKVIN
APVLKDALYQRLNELTRSSRWGDRQGKHGGDWKKGDWKGKKGFSFQNRDE
PREEPIPVPNRIAARACLGLYVKPSWAKEISNTLNYEITQDDERALTYFL
EWLLKEKIESAEDLLYRLTVDPHQQRRFKNLFNSLEHIFGTEEIEAGAQE
SLLVLKRKYFDRSFDKIHQDLSRDPKNKELHEKFRTMSSEKMAMIATPKS
>HCH_05053 Superfamily II DNA/RNA helicase, SNF2 family
MSKLSTPNFVIGQRWISNTEPELGLGIITENDNRRITISFPAATEQRTYS
AANAPLSRVQYQVGDNVSDNDEKKYTVAGVIEQQGYLIYEALDEKGRKVD
LPELELSSFVHFVSPKDRLFSGQVDKLSSYLLRQETLGYQTRQQATQGYG
LMGARVQLLPHQMYIANEVAHRHAPRVLLADEVGLGKTIEAGLILHHQLL
SGRAQRVLIVVPESLLHQWLVEMLRRFNLQFSILDNERCEALTESGEENP
FECSQLVLCSLNFITDNDQWREHALNAQWDMLVVDEAHHLEWSPEQQSPA
YSHIEALAQKAPGLLLLTATPEQLGLESHFARLRLLDPARYHDLERFREE
ESQYQPVNDLVKELLGESGPTRLLDSQDLQAKLADYLGQDAVDKLLAELN
QFAVDADEDSREEALHRVERAVRKLLDQHGVGRVLFRNTRSAIKGFPQRI
LHLHPLPQPEELATLSASASLEQRLHPERLLGAEWVKTDSRVEWLAQWLK
QNRQEKVLVICAHAETALDLEDFLRLRGGYRTAVFHEGLSLLERDRAGAY
FADDEYGAQALICSEIGSEGRNFQFARHLVLFDLPQNPDLLEQRIGRLDR
IGQRHDVNIHVPFFENSAQERLLRWHNEGINAFSRPCPAGAAIYQRFAVR
LESELEQTDDRDEFNQLIADTHQFTEETLQALQQGRDPLLELNSCDPLKA
NDLVEQIVEDERRKELEDYIERVFSQYGVDQEQHSERAYIFRPGDHMQCS
HFPGLPEDGVTATFHRDLALSRDDMQFLTWEHPIVTGALDMILCGEFGNT
GLCTIKLPPLQPGALMVETIFRLNCPAPKALQLYRFLPKEPVRLLIDSSG
KELGQILTAAHLQQLGENVPKRTAQDLVRHARAQIEPLITKAEKTAAAQK
SELVERSIATMLESQQTEIERLKALAEVNPNIRQDEIDFLIQQTETLEKY
LKGAQLTLDAVRVVIAT
>HCH_06120 hypothetical protein
MAFSKLEQNILKAKGLSEDNIQALVDAGIESKQDFQTVGDAGTLAALSGL
EQSVAAEVMVWAIGPQAASTTSSSSTSSASVLNPSVVVESADIVKCAHCQ
HRQPKDYKSGDLCVSCGRQVERFATCHWCAASGPGNFCRSCGAEFVPVAD
FEIAVLLKREGVAKDQIAQRVRDLSADEKDTLWGRIRSLRGHS
>HCH_00743 Superfamily I DNA and RNA helicase
MDVTAVLDPLNDAQREAVTASARNLLVLAGAGSGKTRVLVHRMAWLIQVE
RIGAHAIMAVTFTNKAAREMRERVESLLHIPTRGMWLGTFHSLAHRLLRA
HWREAGLPENFQVIDSDDQQRMLKRVIRELGLDESKWPARQAQYFINSQK
DEGLRPDNIEPGSDAWRQTMNKIYQRYDEYCRQSGLVDFGELLLRSHELW
LQKPDLLRHYQQRFQHILVDEFQDTNTIQYAWLRVLAGDRVPMTVVGDDD
QSIYGWRGAKIENIQRFQNDFGEAALVRLEQNYRSTQTILRAANHVIAHN
PSRLGKQLWTDQGEGEAIDVYAAFNEQDEANYIVESVQSWVNQGRSRSEV
ALLYRSNVQSRVLEEALIRHGVPYRIYGGLRFYDRLEVKNAVAYLRLAHF
ADDDAAFERVVNIPSRGVGAKSLETLRDAARERRGSLWRTSVAAVSAGLI
KGKAGAGLKHFIEIVENLREFAKENSLQDLTKHMLEVSGILEHHANEKGD
KAEARKENLLELVNAVAEYETLDNESPLAEFLTQAALDAGERQAEVDQDA
VQLMTLHSAKGLEFPLVFLTGMEEELFPHSMALEEAGRLEEERRLCYVGI
TRAMEKLVLTFAESRRLYGQDKYHSISRFVREIPNELLREVRLRSVVSKP
MFWDRGPAHGAIGESAQQSGISLGQRVRHEKFGEGVVLNYEGSGPHSRIQ
VNFDDQGSKWLVLSYAKLEAI
>HCH_04446 Mg-dependent DNase
MFDIGVNLTNGRYKGKLQQLLDDSRNHGVAGMVAIGTSVKESLASAKIAA
DHPGYVFATAGVHPHDAKTLDQEGLKTLKSLLQQPHVVALGEMGLDFNRN
FSTPEDQEWAFTAQLDLNRDFQKPLYLHERDAYTRQMEILKAHRSCFEHG
VTHCFTGTREALFGYLDLGLHIGVTGWICDERRAGDLVNLVKEIPRDRLL
VETDSPFLMPRSIKLRPRNNTNFPWFVREVIRIVALYRGETEEDVRNYTA
ENARRLFQTG
>HCH_03608 Zn-finger domain associated with topoisomerase type I
MDTTLEFALKFWFLAPLAGIIALLQTPWFNRLIQRITEQQEPPAPSPLQV
MKVAGATPPKPTQRVRICPQCGARMVSRRVKKGPSAGREFFSCSAYPKCT
GVRAA
>HCH_02819 uncharacterized protein predicted to be involved in DNA repair
MLVLITYDVSVITSEGQRRLRHIAKVCVDYGMRVQNSVFECEVDPAQFTF
LKQKLLDIYHPDEDSLRFYFLGKKGRQKVEHYGAKPTPDIFRDSLII
>HCH_05684 Holliday junction resolvasome, endonuclease subunit
MTLSVLALDLGTRTGWAAKGKDRAIVSGVMNFKPQRFEGGGMRFLRFKRW
LTELKANLDGIDALYFEEVRRHVSTDSAHAYGGFLATLTAWCEHHEIPYQ
GVPVGTIKRHVSGKGNASKEDVIAAVRKRGFNPSDDNEADALAIMLWVQD
TQETEYENA
>HCH_06232 conserved hypothetical protein
MRWIFISLLMLNGLVFAVQWLELQKREGLEEVRNRVALSGVGANRLTLLS
EVDVQEEEVGDKSSIEKLPETPVSKGERLCLLMGPFEGDAQAQSLKIALE
KRDVESVAFPKNISLAPEYWVYLEPVESRKTAIIKLRELQVRKIDSYLIS
QGELRNGISLGLFKNVDSANRLLKQRISEGYDAKIKEVPKERLEYWVATK
EEANLQTVARVDKVLDERNLNTNKRQIFCKSIASGVELP
>HCH_01909 DnaA family protein
MRKSENTQMALRLSNGESATLENFFEPPSGVVVQSIQRFFTASEDTVFSI
CGASAQGKTHLLMAACNGFRSEKCFYLSLREYADFGVHVLAGLESFDVLC
FDDIDAIAGQPEWEEALFHLFNRCRERGCKWLITSAEAPSQTPFLLPDLK
TRLAWGECVRLPELDEVQRINVLDIKAANIGFRLSDEVKQYIMRRAPRDL
SSLSLILERLDKASLVEKRPITVPFVKSVMNW
>HCH_00843 Transposase and inactivated derivatives
MKYVNHLKPAEIKTLTDGFRYSPSSRFRIRCHAILLSNKGYKIDKIADII
DFHRNTISIWIEQWESMGICGLISDASPGRPPIYTEQEQEKVCKWIDEQP
QQLRDVQIRLEKETGKSASLETVKRNLKKIKV
>HCH_03400 Transposase and inactivated derivatives
MRTAGWGKPALGGENVGPNPTDRGKKGTKKSLLVEAEGGPLGLVIAGANV
NDHKLLEATLESIVVERPAPTVEARQHLCLDKGYDNVASEDVAARHDYIP
HICRIGEEAQPADRHPSGKPRRWVVERTFGWLSKCRALLIRYDKKDSNYL
GLLQLACGLLWFRRMWRLQGRQ
>HCH_05032 Transposase and inactivated derivatives
MYVLKSLTDVRELTEIWIREYNEERAHDALNDLTQWGCLAKHQGLENSNY
ECR
>HCH_02902 hypothetical protein
MTAEAIIDAIVTKLSAVVAGGEYENTISHVEEAPYNVSNDDLDDGVTAVV
AYAGQTIADQSPHTQLDELSVLVEAHKRLTSQNAQREAMKLEQDIRRAVL
KDKNYLAGLARIDRVFAESSGIESSDSGAVVIAMVTFRIPHVQRHNSL
>HCH_02100 protein containing transposase DDE domain
MKIAHKITNLLDCPEFISAHRVLPHHFTRKRHLTFKNLVLFLLNQPNSAL
QTELDQFFRVLTDAALETQVVTAQAFSKARKKLKPSALQALNEVLQAQID
LCRQRQTWQGMRLLAIDGSTVHLPLEDALARHFGAHSGFPVARLSVLLDI
ADNQALHNLIVTPDIDERGCAAMHLEHAPDNSLILFDRGYPAHWLFAECQ
RRQQHFLMRMPVNFNPEVTQFLHSDKAEQTIHLTCRSWSTRQACEQAGVD
PQTVIPLRLIRVILSTGEVEVLATSLLDADRFPLALFSDLYHRRWGIESD
YRRLKQTLQLDNFSGRTVTAVLQDFHAQQLLKNLAMLMQALQQPLIEQQC
RRRKLRWKANFAGAPSRKGCLG
>HCH_00593 Superfamily I DNA and RNA helicase
MTHHVLITPSIRGHEPGFPNHHHQASMQLTEEQQRIIQSGFEHSVITAVA
GSGKTTTLAHRIHHLMDQGHDPRRILILMFNRAAKEDFERKLRQVAGTHY
REQPEVRTYHAMGLRLYQRFIREGVLPAFVGQVLSDQEIHFQLWQLLRRH
APESHQDSVKRNKKEYIELASRLLDMSKTSLLPLQTVFEQLEYRKELAFL
IEVVNSFEAWRKSHSRISFADMLYEPVKCLQESPDLVKLVADKMDVILVD
EYQDTNEIQHLLLRYIAGARARVTVVGDPDQTIYEFRGAQPEFILNRFAE
EFESPREFTLSYTFRYGHKVALLANHLITHNHGRKDLLCRSHKGTPSTDV
NVLQGGDETRQLVLQLGRLLNGGGEPEDIAILFRVWSQAVPVELALLAHR
IPYRIDGDKGALANREVMHIQYVLEMASGRLGMLEENKRAEVLAGLLRFP
HVGLKDDTLRELAHILAQHDAHWGDQLLEWIPDSLHALQKRKLKRTAQAW
SLLPKMKGSAADIVRFYIDDTELFKTLEELALTHDTADERINNVLGVEHY
LATLNLPSLETLQHFDELRRLASAQKQQGGVTLSTMHRTKGLEWPVVMLI
GLNEQYLPYSMRGGEDIVDHLQAERRLLYVAMTRAKEALYLFTPTLNDKT
ALSKDDKPSRFVKEACMDVSMAVGEFLDQRKQTDANDSAHYESGQRLTPI
ATRYLDWHNVNYEQPAQAAASEPEQIWSGDRVRHSILGEGEVIADLDDAF
QVEFEDGRRMNFSKKSAHLYFSSLGG
>HCH_04649 Methylated DNA-protein cysteine methyltransferase
MIEYFDIDSPLGRIRLAAQNGELTGCYFEDQKYYPELTTLWRHNPDCTVL
QEAARQLELYFAGQLQRFDLPLAPKGTAFQQEVWSALSDIESGRLSTYQQ
IANFLGRPRATRAVGAAVGRNPISVIIPCHRVIGGNGSLTGYAGGLNRKQ
ALLELENALL
>HCH_02202 conserved hypothetical protein
MLEQAINRGQVWRGKHFSSVPIKGLDTGFPSLNQALADGGWPADGVTEIE
YRSLGMGEVSLLFPALAPLSHQDQWILWVAPPYPLYAPALINGGLSLYNN
LIIQPQSRRDLLWSIEESLKSSSSSAVLAWPESMRPEHVRRLQIIATQQQ
KPCFLFQDRQYANSPSSLRACLKMLPQGGLCVEIQKQRRGWAAAKVAINP
PHPLSFLIRPPFPSAAESDAHRKIVR
>HCH_06350 DNA polymerase I
MSKENRSAPVVLVDGSSYLFRAYHVPNLKELRNSKGQPTGAIRGVISMLR
KLQKDYPESQVVAVFDAKGKNFRHEMYSDYKANRPPMPEDLACQIEPLYD
IVRAMGLPLLIIEGVEADDVIGTLAHEATTKGLDAVISTGDKDMAQLVSP
HVTLVNTMTDTTMDREGVVEKFGVPPELIVDYLALIGDTVDNIPGVNKCG
PKTAVKWLGEFGSLAQVIAQADEVKGKIGENLRSSLEQLPLSKELATIKT
DVELPFTLEEVHPNPVDTEALHKWFTELEFRTWIKDLDASTSSPTAATEA
SAPPAQSDERDYQVVTEQDQFDHWIKALTDAKTFSFDTETTSLNYMEAEI
VGVSFAVEPGKAAYVPVAHDYMGAPEQLERDKVLAALKPLLEDPAYRKIG
QNLKYDAHVLANHGVQLNGIAEDTMLESYVLNSTANRHDMDTLASKHLGR
ETIHFEDIAGKGAKQLTFNQISLEQAGPYAAEDADITLQLHHALNPKLKK
EGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLELEE
EAYEKAGQKFNLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELA
EKYELPRVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAATGR
LSSSDPNLQNIPVRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLS
GDEGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGM
SAFGLARQIHVERSEAQSYIDKYFERYPGVLNYMNRIRAEAQDTGYVETL
FGRRLYLPDIRSSNRNLQQAAERTAINAPMQGTAADIIKRAMLAVDAWLE
GDSAPPAKMIMQVHDELILEVEESAVEAVKEKLTQIMSSAADLNVPLLVE
AGVGNNWDEAH
>HCH_02354 Transposase and inactivated derivatives
MAISTADVTDRKGVLQALERCKPVLNRVQSLLCDSGYTGEPFAQGVRDIL
GEHAQALDRRAQLCLPRQKSAAVVEKLRALA
>HCH_02447 ATPase related to the helicase subunit of the Holliday junction resolvase
MTLNLFESEERRRSAQYAPLAARMRPRVIDEYIGQTHLLDADKPLRKALE
RDQLHSVIFWGPPGVGKTSLARLVAGYTGAEFITLSAVQSGVKEIREVSQ
RARANSQSGRKTIVFVDEVHRFNKSQQDAFLPYVEEGAFVFIGATTENPS
FELNNALLSRARVYPLKPLTIDDLTALLQRALSDAENGLGQTSWSYDADL
LRMIAEAANGDARQALNILETMSDLADPGEQGGILSRELLASVMQVSLKR
FDKGGDAFYDQISALHKSVRGSNPDGALYWFARMLNGGCDPLYVARRVVR
MASEDIGNADPRGLDLALSAWDVQERLGSPEGELAIAQAIVYLACAPKSN
AVYSAFNAAMKLAAESPDYPVPVHLRNAPTKLMKEMGYGKEYRYAHDEPG
AYAAGETYLPEELDGLRLYHPVERGLESKVKEKLEYLRSLDEAYQNRS
>HCH_04887 Serine/threonine protein kinase
MDVSRWNQIQELFEAIADLSTEEQRAYLDIHCQDNELKKEVLQLVQADEH
VDDILPKQYDIASAEATLVLPKMHPGVMVGPYKIIRKIGEGGMGWVYKAE
DTRLERYVALKCLAPEVATDERVRFRLMQEAKAISRLDHPNVCVIHDVGA
MSDGGMYIAMQYYSGETLENALTKGALAPDQVVRIAKQIAYGLQAAHQRD
IIHRDIKPANILLSEDGIVKILDFGIAKLSGVDITLGGARMGTLRYMSPE
QLQGRDMGLQTDVWSVATLIYEMLTGREMFDGEKSSTVLHAVMHEEPDYS
LAVFQEYPLFKRLLTAMLHKKPEKRLDSMGKVLQWLTTIQPIAQAGAKNR
ARQDQRIENQEAVVKEELTDLYLLRLAAALTAHVGPAAPKLIQRYASTSD
NRESLINSLVGHIKPQYRQIVSQQLKEIAL
>HCH_05408 DNA repair photolyase
MQYGEASKGRGTGTNPHNRFQSQRSEIDSAELAAWSEVHDEAYQKHPQTE
YIQQSCQSIVSKNNSPDIPFTYSINPYQGCEHGCVYCYARPSHEYLDLSL
GLDFETKIYCKTNAAEKLRIFLDQRNYRCETIAIGGNTDPYQPSERSLKI
TRNLLSVMVETKHPVTLITKSNLILRDIDLLRELAFQDLVKVMISVTTMD
VKLKNILEPRAASPKARLKTIETLRREGIPVGAMVAPVIPGINDPEIEDI
VTQCANAGALNAGYILLRLPHQLKELYENWLQQHYPLRKEKALNLLRECR
NGELYQSDFRTRQSGVGPFARLIEQRFSIAAKRNGLNLRRDSPLRTDLFT
PPGASRQIDLFSL
>HCH_01987 probable phage protein
MNETIQIRNISFLGPSVDPALVSFDQSLSVVCGASDTGKSFLVEAIDFLL
GGKDLRGIPELGGYDKARIAVDSSKKGSWTFERSIEGGNYRVYEGIIESE
TDAKESDSIKMKHAAGREDNISGWLLGCIDLLGKYVRKNANGECRSLSFR
DIARLIIVNEQEIIRQDSPFLSGQHVSKTAEKSTLKLMLTGTDDSAIVLA
DARKQSESNDQAKAELLEQWISDLEDEISEHGYSREELVEQLGKLEASIS
FSKEQLKLAQSQLNEMTTQRREIVRNRELVKDRIDDIAHMLERFALLKAQ
YVTDLHRLMAIEESGSLFVHHERVPCPLCGASPETQHSMEECEGDVESIV
IAAVAEMEKIKRLASDLDSTVTALKEESGRLLEDLVKIEANFNCVDNEIK
SAIAPELSDVQSNYTEFVDTRSKAISRLSLFTRLDKLRAQHEEFFGDEEK
TEGGDKKIATKLSTQVLHDFSKTVEKILEAWDFPDTGHVHFDETTMDFVI
NGKLRGNRGKGLRAITHAATTLGLLEFCKERSLPHPGFVVLDSPLLAYYK
PEGEGDSLQGSALKQKFYKYLIEEHSDSQIIIVENEHPPEAFEGQLGLTV
FTKNPQHGRFGLFPLKVS
>HCH_00841 Transposase and inactivated derivatives
MKDLQSWEDAGEIELYYFDESGFSQRSNLPYGWSPVGKPTQMKSYPHNKR
LNVLGFMSRRQKLIFHATEERVDSAKVVALFNKLAESKDPLKPAVVLLDN
ASIHRSAEFRRHRLDWIDKGIWPIYLPKYSPELNLIEILWRKVKYSWLPL
DSYETFDRLKESVNDILSKFGQEYKINFV
>HCH_06862 Serine/threonine protein kinase
MAWQGYKVLSKLGEGGMATVYKAMQESLQRPVAIKILSANLKDHPEILER
FEKESLIIAQLNHPHIIHVIDKGVTGKGRPYFVMEYVEGMTLEDAINRGK
LDFSRKMDVLVQLCKALAYAHKNGVIHRDIKPSNILIDNDWQARVLDFGI
AHFYDSSSKPKTLHTQTSNIMGTSAYMAPEQHKSADAASVQSDIYALGIL
MYELFTGVCPQGEIPPPRKFEPDMAPALNSLVMRCLEKDPAERPASADEV
KNGLLHILQGGHLSKAQKERALSNSEAIESKFSLLDVLKEDRHSSVYLYE
DQGKQKLLIMKKLPGDTPGIKEHKLLARLNHPNICKILAVSKVDKGYVIV
TEYLPGGSMAEQMLAPLPAVKVVEWAEQIAEGLAFAHRNRIVHGNLRPSN
LLLDEDGSIKLTDFGLRAHYTDSDEPNWYENADAQGILGDMFALGAICYH
ALTGQPPVVRGQRLVRSKRFTELPNRLQELINRLLETRPDKRYPSLEVAM
ADIRGVLKNLRAQTAAKQTEAIKKHVSQVAKKERRYRPPIRWGRVVFFML
VIGVAAEEYFWGYGYRYLKPYLDPYLQQVQESDAWIEWSEKAKEVGRKTN
QIDW
>HCH_00620 DNA repair protein
MKGDQIIKQALTILTSRLTQPGAVITSPELAYDFLKLKLAELQYEVFGVM
FLDNQHRVIEFDAMFRGTFDKATIHVREIAKKALLLNAAAVILSHNHPSQ
NSTPSQADIRITEEIKKSLNFFEVRVLDHVIIGGTNKYSFAENGLL
>HCH_10004 predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
MHKKFGVIAIPLNSSEYPKHLKSIANPPATLYARGNLDLLYEAPGIAIVG
TRNATANGLEITKRVAAYAVSKGAIVVSGLALGIDAAAHQGCLNAGGRTI
AVLASGLHIATPRQNAGLGDAILESDGLWVSEHPEGTPPARQYFVPRNRI
QVGLSACSVIIESDVKSGTTTHAKFCVQEKHPLFAVVPQPRNPFGLNSAG
PEMMVRDMGAIPLKTRNDYTLLNQALHASHNLN
>HCH_01766 conserved hypothetical protein
MNKGSGVSYIRERVKAHPKPADEQLLTRIRDHSISMLLNFLNSMFDGVDD
SFFELANHAHTNNEQNRYFEAMREIRIKRKGIENHFQQELARLFNQPPSQ
HKTSESLSDNVDVDVLSLVQNDALEESVAINSMISKARANFSGSLLQFQT
RVSSVYGETNEENAVNPLDPEHICKAFSDACIGLDIEIKEKLIVYKQFDR
YVMGNLVECLEEANKIMIQAGVMPNLKYTAKKSRVTPRSTSDVSARPLEA
QSDANGYDGAGDVFSQVQELLSALRNTASNPEQQQGDPNTGAGGRQAPPP
GNVQFIADADLLSILSRLQHSVRTENLAEGPVVALDLRTAVQGLLSEESQ
KSGKATALDQIDEDLINLVSMLFEFILDDYNLSAPIQVLISRLQIPILKV
AIRDKSFFSKPSHPARKLLNALAKAGIGWSDASEKKRDKLYEQIHRAVQR
ILEEFNGESELFEEIYQEFSQYLSREERKAKLVEQRTKEAEIGRVKSHKA
HQVVEQILSEKIAAQPLPPVAVELLRGGWSRVMFLAYLKEDTEHRLNQCT
KVVDELTWCLQPHAEVEARQRWVKVVPQLLKNLKAGLKEVSYNSAKLEHM
LGELKKALTETFKQQSITSAQNDAPKPPAPVAAVIEQKLTPAIKTAVERQ
SEYEDAALAEYLTKIDEMECGAWIEFSLVNGTRFRCKLSTKIEDSDTYIF
VNRLGLKVVEKTRGELAHELRKGRIKALEEGLLFDRAMNAVIGNLRKMSG
KAA
>HCH_03070 Transposase and inactivated derivatives
MPKPRKAQISIDATPFYHCISRCVRQAYLCGQDVDGRDYSHRRKWVESRI
LFLASVFSIDVCAYAVMSNHFHVVLHINHKQVASWSDREIVNRWNKLFTG
TELSWRYLRGEPLDEVDLQRLQKQIAIWRQRLACISWFMRCLNEPIARMA
NREDGCTGRFWEGRFKSQALLDEKALLACLAYVDLNPVRANLARTPEESA
YTSVQRRISALKSEQPHQPAKLMPFVGPQRNMASQGIPFALDDYLALVDW
TGRAQRDDKPGYIQQNYPPILQRLNFEPNHWLTASLKFESRFSGWVGAYY
RLKAVCVKLGYTRIPGRATCTLLLAEQSAGA
>HCH_06189 Single-stranded DNA-binding protein
MARGVNKVILIGNLGSDPETRYTPSGSAISNLRLATDESYKDKQTGQLVP
RTEWHRVVLFGKLAEIAAQYLRKGSKVYIEGRLQTRKWQDQSGQDRYSTE
IVVDMQGQMQMLDSRSGGGGMDNSQGYNDGWQQSAPSGDSYGSAPAAAPA
GNYGGASSNNNYGGAPNNNFGASSGGYSAPNQAQQRPQQPQQPKPPMPEP
MDDFDDDIPF
>HCH_02102 IS116/IS110/IS902 family transposase
MWRHFLRTVEEIADIEHKLAELIKKDEQCRRLQALEGVGPVGALLLKIVL
GNPGHFKNGREAAACVGLTPVQHNSSGGKERIGSISRVSGNSRLRSALFQ
GALATITQLERRPCRTQKEVWLSQLVARRGKKVAAIALVNKTVRTAYALL
KQGKEYQPELLAA
>HCH_03684 Serine/threonine protein kinase
MTGAPKLQQFYIPEEQSIYLLSHNDAKKLKDWVALCKVQLEQLGYRDIEM
VGKGAYGFVFAGVTAGGEQYVFKFSRITLPQHLQDRLEEEAFMLGLVEHP
RVPSLIAFQRIRRQSILVMERAPGVDLEQYSLKVGRMPPRLVVKIAAQLA
DILRNLRSDKGPAGRPLVHGDIKPSNLVYNPDTEQVALIDWGSAVFAQLD
ENNQYVSANVMELMSSDLQQTNARLGDVYFIGDEQLNGGLSSPRFDEQGV
AGTLYALASGQSCRFGHRALPAVSLGLPAEFARMLDAMMDDDPTVRAKAG
DYFLRHMARLVMLDLPPVQETPLAPVWVRPQKRGIDTVVYSSRKSFLREE
GVKEELKEINDVQLDRYYKNFMQGMGETEKAFIAAVSRLGRYPVVGGLAV
RWEKEGVYIDTSLNLRDPDLKPAFVAAVNNMVNLARAIHRQGVFKSCLFN
ARDTLHVDREGPEKPFIPEPGLSLGYEVSATPDLEDQTRVHSYFEDGPDP
EEFLVLPIEIMEILELLNNIHHTGLIIFESLPTHLKIHSYYRLLDPSREQ
EFRYCLDAIIAAIPLIKGLGVSGFMKMPYKDTKFFSHIERLPEKYYPKNP
RDEAVALTAGPTS
>HCH_07038 Superfamily I DNA and RNA helicase and helicase subunit
MEVEIWDGGLQEQEVAAIEKIKAAFSDSVNAPKAPVRGGSLRDQLQSSYG
NNKVMLPWKGYAGFRFVEAKKEGEFDLVIVTHCNVIIVELKDWNHQPVTA
RGDTWYKGDQNMGRSPVSVTRGKKFTLDNKLKRLAQRFTNKGYPPFVHFF
VVMTGNADFSQLPEDQLHHTISLTDFLKFADRNTFNKHFRPHPNAQVLNQ
DFPIFDNLFIGPQTGPKALRVDGYEAKDKIFEHPKKVYKEYIAKSEISTN
TEALLRVWKFKNVEGNKAYTPEGRAEIVSREREVLQHINHQNRDLYNHCL
RSLTSFQKDEVTAEYSEVYELPPGHVRFNEFIGKYGKAFSELDRLNVTKL
LIAKFGDLHEMKIAHRDIADHSLWISPSKEVALSNFISAYHQPIGTVGDY
RKSLSVGAVEAQDMLDGGELTPFQQDVHALGLVAWHLLSGKRMSPKSLET
VQDDMLNSGQWFSEALLDAVAAKFATATEFFDALKQAEPAGEAIPTFDDA
ELDPYRHAINHSRQYREDDDFLVETAEKEVYVSGGRLVKAWLNAGGQGDD
SAANFQILKFLKLLDKLSSVKPTYLPEIREFGIASKSSSLYMVTDQVQGA
TWDKALIADDEKIELIGKFVAAVEHLHGLGVAHGDIHPGNVMLETESRSL
YLIDIPDFSPAGEELKNHSYSPEYIDGCTSFERDNFAVMKMSCELLGLSW
GHESETYPALADAIRAELEDPHFGFKDLGRFKKAIDSGNASSEQSLIEIT
AGNADEAITILPDNGHLYVKIEPNHKEPTEVKVTFIGIGGSFSAMFCKQQ
QALLVGFKPWPRSSIRKQDIDDSHFEIGIGIRVIPGRTQEMSALTKLLNE
DESFARAIELATAPEEKPEEDTLTLQLKEAFSRLDKQAVEPASAKTLEIP
TAKLWRAILDTETESYPNIEVSGETIPVADAHGELLIPYSADVDPLGGFS
SSDEVEALLVDKEGVERFIGEVSLKKSALKEIRLVKSRAAAYKLTDTDIV
FFRTKQDRASYRKRKRALERLLDREGVMPELMDLFDPSCEKAALNYGISL
SDADFARYDREDHHGNKISLNEQQREAFAKLVNNGPLSLLQGPPGTGKTE
FIAAFVHYLVEMQNTKRILLVSQSHEAVNTAAERIRKHCARLNTDLEVVR
FSNREGAVSPGLKDVYSNAITTEKRELFNAESKYRVEALSEAIGLEPEFI
SSVVLAELKLFKQIDHLETLLYQVNDLSDEKDIKELKEISVKLDLSIRSK
LSTEYGISLDAGARVSEAKDILISKLCREYGVRPDEARRVKALAKISRDM
QEALSGERVNVDEFYARSRQLVAGTCVGIGQGHIGIQENIYDWVIIDEAA
RSIASELAIAMQSASRVLLVGDHLQLPPLYSDAHKAALARKLGIHSSRTE
IDEVLRSDFARAFNSTYGDQASAALLTQYRMAPPIGDLVSKTFYEGKLRN
GERAIPDVYQHAPRALRSMVTWLDTSSLGQRAHHSEDRGRSIYNRSEADQ
IISVLKQVSEDAEFVAELSKLTSEDEAAIGVICMYAEQKRLLRQKFNQEI
WSDGFKDIVKIDTVDSYQGKENRIIILSLTRSDKQHSPGFLRAPNRINVA
MSRAMDRLLIVGNADIWKGNNKELPLGSVVRYMTERGQEAGYTFISAKQD
GKQK
>HCH_02787 Serine/threonine protein kinase
MTEDSRPSQDSLDEVVDPTQPQQVCEPTEIAPGMEPTQLAQASPPEEGAP
EGDEPTEPQLRTEPQERTEPQQQPAPQTKVVPQPATAVSSPSTSRRTDNT
ATGKASTWGVIPPAILQNYDLVEWLTTIGAEATVGIVTRHDTGEDCILKL
YNPNMRPKDEVVRYLLGNQGKHHIVNLIEAQFCMSTHRFFEVMEYVQAGT
LKTYLKSLSGPMSLTMVHKLLAQLHDALSRLHDHAIVHRDLKPDNILLRS
TSPLDICLVDFGISSLMNTESNRTSISRTERYAAPEASTGLKSAALDWWS
VGMIIMECLRGKGVFEQIDHETVVDHKILHDIDVSGVADVRWRLLCAGLL
TRNNELRWGTEQIARWLAGDNDIPVYRDLEPVKARRVSARGKVPEGAFRI
GLHDCMTLEEVGKALQSEWDVNPLVDKVLAKQLENWFSSQDNLEAAQRVR
HFAQESSDPNLRLFKFISYLNPNLKAKFKELELTREGLQAFLGQGAKNLT
RSNLETLTGVYRHNLLEQAGKTQRDVTLRQYAHNWQREVIAYLTSLKGLR
QQSGTETLMPRVEANPLLNIPLKFAEMGSFTQPGAFEKMPGMAFMAHVLE
AILKHQSPAELIAQIPVERFREASQVKWFGRIYRAEPTSIAEARFILDLL
PMAEAQLADEREEKRRYKRALIERIIFGSLWAAMSTGFILFTLRNHVSYL
QAEKGLVFGLMFSVLVGCIPFRPKYLLLHGLSLSALVCGLALVEGSPVDL
SSVGDMLSSIKRLGTNLAGPMQYLITLALGGFVAGIGIRQVFAKAPDGRM
GQRLARVAGLASAGGILAVIVLIPSPIATITGLGGPAPANGTVTQDLGPS
HSLFLYQHYSSWVKAESNTFTLQKRLKVNEDLRERFGSRYEQDVQKTRAQ
LNVAQDQAAQSLGEYKTALANACDQNLSAEKFTRHLKDNGVTTANLSDQP
VTRLLLDHLGQCISAAEAGDDELKDQLNAILN
>HCH_02196 NTP pyrophosphohydrolase including oxidative damage repair enzyme
MLDKIITTLSSNQPRRFPSDFPEAAVLVPITREECPQIILTKRAEHMKTH
SGQVAFPGGMRDPSDQNLRDTALRETFEEVGVSPEKIEVVGSLNQVVSRH
GIAVTPYVGIVDPEIELIPDPGELHSVFKAPVSFFLENEPDRLDKINFEQ
YRLQVPCWYYGDYEIWGVSAIILMDFFRVSFNRRIGSFTEGRG
>HCH_00358 predicted endonuclease containing a URI domain
MSENEVAAMSWCVYMLLVSDNSLYTGITNNPAKRFRDHLQGSGAKYFRGR
KPVRLLYAEVGHDRASASRREIEIKKLKRSGKLRLIEENVLDNAFRELNR
SCFGL
>HCH_04565 group II intron-encoding maturase
MKTEAIRMGQGIQGDVGRYPAETEARVEADTGAHSWTNAEPNTLMEQVLE
RPNLMHAYQRVMSNKGAAGVDQMPVAALKGHLQQHWPTLRERLLAGDYHP
QPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHSYG
FRPGRSAHQAVRAMQRHINDGHRWVVDLDLEQFFDRVNHDVLMGLLARRI
ADRRMLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDR
ELERRGHRFCRYADDCNIYVRSERAGHRVMTSITHYLKMHLRLKVNAEKS
AVDRPWRRSYLGYSVSWRKQVRLRIAPKSLKRYQAKLRQLLRQSRGRPLQ
TTIARLNPALRGWANYYRLTTSKRPVEGLDGWVRRRLRLLLWRQWKRTYT
RARNLMRLGLSEQRAWSSASNGRGPWWNSGASHMNAALPKRMFDRLSLVS
LLDTMNRLQRQS
>HCH_04672 Serine/threonine protein kinase
MDWSCSVITVSPQIPNYEILDEVAEGGMAKVFKARQTLADRIVAIKIISP
AICLNKEFRQRFIQEAQITAKLNHPNIIQIYDIAPFEDTFFISMEFMEGG
SLTERIRSGRLTRDESTRIILQLAEAMNYAHKLGYIHRDIKPGNILFRAD
DTPVLSDYGIAKSLYHRGDLTTTGSILGSPPYMSPEQAMGRQLDHRADWY
SLGIVFYQMLTGAVPFEATDPISLGIKHKQEPPPPLPSHLRMYQQLMDLL
LAKEPERRLSSLDEFRAHLEAIKNVPVDTEATCLFTVESLKTAHGESAAQ
ESPTSTRRTERGGSVSSGVWRALGVVLMIAAVVGYGAYKNMTRPAPTYPF
VVVTEPVGATVTFAGEEGAYTPGASLPEGDYEVEVTAKGFWPKTFTLNHS
ADHRSHYVSLKPAKTAFTVDVTPADAKIRILNIQPKYEEGIPLDPGRYLL
EVSAPGYEKLTRWTEISGEQFTEQVFLVEKDALESLNIAFVDIPGGKYRM
GFDDGGVLWGGDPGQEVTLAPFKIMAYEVTFEQWDACVADGGCTNKADDR
GWGRGRNPVISVSWNDAEEFAAWLSVKTGRSFQLPTEAQWEYAARAGSRK
RFSWGDQISHKFANYGKDDCCGGLVNGADKWQFTSPVGSFPANQWGVHDM
HGNVWEWVQDCWSESMKGVPADGSARTAGDCRRRVLRGGSWYSPPKSMQL
VSRDANGVDVRYQVNGFRLVETPTQAPAAGAATQ
>HCH_02855 Site-specific DNA methylase
MSVIHFQYRHKPQLGFLDCQGELVVDNFAGGGGASTGIEQAIGRSVDIAI
NHDPEAIELHKLNHPQTEHYCESVWNIDPREVCKGRPVGLAWFSPDCKHF
SRAKGGKPVEKNIRGLAWVVLKWVGTVRPRVVCLENVEEFTTWGPIVNGQ
PCPKRKGKTFQSFVRALERNGYKVEWRQLRAHEYGAPTIRKRLFMVARCD
GQPIIWPAPTHGDPRKPDFKKTKLQAWKTAAEIIDWSIPCPSIFDRPKPL
AEATMRRIAKGIERFVINNPEPFIIPIAHYNGSTPVHDIITPLRTVTANP
KGGAFAIVAPSIIKVNHGYNYLRGQQVSGPLQTVTSTNGYALAVPVLTRQ
FGNSGANNVTTPAGTTTAGGGGKTQLVAAFLAKHYSGVTGASLNVRTVTT
VDHHSLVTSHLIKLRGTCAHGQATDAPAATITAAGCHLGEVRAFLMKYYS
EGGQWSVLDEPLHTVPTKDRIGLVMVHGEAYQIVDIGMRMLQPHELYAAQ
GFPADYIYDRLPDGSKLSKVAQVRMCGNSVCPPVAAAIVSANYQEQFNLQ
NAVTI
>HCH_03196 Transposase and inactivated derivatives
MSGKGNCYDNACMESFFHSLKVEAIHGERYATRQEMREAVFEYIEVEYNR
TRLHSANGYLSPESYEASKVA
>HCH_05385 DNA mismatch repair enzyme (predicted ATPase)
MSKIHLLSPRLANQIAAGEVVERPSSVVKELVENALDAGARKIEVDIENG
GVKLIRIRDDGGGIPREDLPLALSRHATSKIETLEDLEAVATLGFRGEAL
ASICSVSRLALTSRPQNQGEAWKVEVEGREMKPEISPAAHTPGTTVEVRD
LFYNTPARRKFMRTEKTEFGHIEEIIKRQALGRLSVAFTLRHNQKVVHQL
RPAASEEDHIRRIGQLCGANFIESAIPINVSASGLSLTGWVAKPTFSRSQ
ADLQYFFVNGRVIRDKLVAHAVRQAYQDVLYHGRHPAFVLYLELDPATVD
VNVHPTKHEVRFREGRMVHDFLFRSLHRALAEVKPQAAAVETLPVVEQER
PVMQWPTQDALPLRQQPAASGFSMTGNPPASAVRDQISAYGQLHDKSGLS
DMFGAAPEKVLSVVDDAVEAPLGYAIAQLHGVFVLAQNAQGMVLVDMHAA
HERIVYERMKRSLHNSGVTTQPMLVPMNLAVSRRESLAVEENAETLRQLG
LEITAAGAESIIVRQVPALLRNANVEALVRDVIAELAEHGSTRKVEETMN
ELLGTMACHGAVRANRQLTIAEMNALLRDMEDTERSGQCNHGRPTWVQLT
MSELDKLFLRGR
>HCH_01325 Transposase and inactivated derivatives
MILDSRTLQSTPESGARAGYDGAKRRKGSKVHLAVDTLGQLLALRIPPAN
EQDQDQVAALAEQVQKVTGESVEVAFVDQGYTGESAARQAEQHGIRLEEV
KHTEAKKGFILLPRRWVVERSFGWMARFRRLSRDYERLSTVLAGFHFIAF
VCLMLPTAMKALAASGVSMN
>HCH_06679 conserved hypothetical protein
MVRRIIVVAALLNLSACATMNENECRNADWRVIGYEDGVAGRSATYLSQH
REACSDHNVSPDLDAYRAGFDDGARNYCKPQNGFDLGRGGDAYKGQCPPD
LEPVFMRAVESGQFVRYMEKEIKDAEGKRNTAEKDLDKNRDKIDAIEDEL
VNGSGDAQKRRDLLKQMRELENRRDDLNYELRHLDAKIREYRSVIDSIIV
EQPWMKP
>HCH_06652 DNA G:T-mismatch repair endonuclease
MKRSEIMAAVKSKDTTPELKVRKLLHSLGYRYRLHANDLPCKPDIVFRSR
KKVIFIHGCFWHGHPCKRGARMPKTNAEYWIKKIGRNIERDRRGYEALHQ
LGWRCLVLWECELKDMDALQETLHAFLEEDSHNSRISD
>HCH_01952 Serine/threonine protein kinase
MAAKRHSVFNNVRRLLARAYSLRTVVVVAACLIVVAPQLARHLPSLDTWL
YNAAWSVNKNTPVKPADDVPLAQRLMPGLAPTPIFFLDPYLASAKLDAAS
QIETNAFRVAPGLQTPPWFFLAEKALILVCMLLLVAALPRMTWPAGFFTV
AVFVVSLAVIQIGMQVAQSRWLPLGVTIQFLVAGYLVMAFWLKQQKQIEA
LRDARQDVSLRLGKMQLKQGMLEETLTTLRPCLSREDACAIVYDVAVQQE
KKRQYDAAANTYLSIAAVNPKFRDAAERAKKLAKFETMQQAGDTEWAATQ
TLATPADISRPVLGRYEIVRELGRGAMGVVYLGRDPKISRQVAVKTLNYR
QFDSHRLTDLKARFFREAEAAGRLDHPNIVTVYDVGEEADLAFIAMDYIQ
GKSLNVYAKPGRLLSVEVVYMLMAKVADALEYAHQKNIVHRDIKPANIIF
NPDNQQVKVTDFGIARISDKSKTRTGQMLGSPLYMSPEQLKGGKVNGVSD
IFSLGVTFYQLLTGEPPFNADSLPELTQQILNKKHRSVRELRPELPASAV
RITNKALQKDPAKRYANAGEMAEQLRRCCMNEFGKTALC
>HCH_02814 conserved hypothetical protein
MSYGIRLLVWGERACFTRPEMKVERVSYDVITPSAARGIIEAIHWKPAIR
WVIDRIHVLNPIRFESIRRNEVGGKLSARNVAKAMKAGRVDGVAFFVEED
RQQRAATVLRDVAYVIDAHFELTEKAGVDDSEGKHLDIFNRRARKGQYFH
APCLGVREFPAYFRLLDADESPPQPHTSLEGEVDLGWMLHDIDFVNGMTP
RFFRARMVNGVIEAPSFAEAIA
>HCH_02103 Transposase and inactivated derivatives
MQKLNVIAIDLAKNVFQVCKTDQHGRVVFNKAMTRTSLKTFLIREKVSMV
AMESCGGTHYWGRYAEAAGHYVKAISARQVKAFRQGQKTDANDALAIAVR
QPHIKTSRVISAQEQCLQGIECMRDLLVKQKVSLSNQLRGLLLEFGLPIA
QGDRALN
>HCH_03466 probable phage resistance protein
MILLKDLITIPEKVQSGDFVLNLSTGLEPAAVKQTLDQYVVTPQLARAFE
DALGFIKSTIEGNQNRQKGAYLHGSFGSGKSHFMAVLHLLLQGNAEARAI
NELAPAVNKHDDWLQSKNILLVPYQMIGAASIEAGVLGGYAKYIHKHHPE
APIPGFYLADGIVKDAENLRATMGDVAFFQALNKNGQGGGEDSGWGDIDS
GSWELDSYTLAISANGNRADRSRLVGDLVQAFFQSVTEAAKTDDQGFVDF
DEGLLIMTEHAKALGYDAVILFLDELILWLASRISDEKFIAKNIQKVVKL
VEASEPRALPIASFIARQRDLREFVGDQYTGAQQDSLSDALKYWDGRFHT
IKLEDRNLPVIAQRRLLRPVSESAKIQVDSAFETMDSKMKEEIFNILLTN
QGDREQFRSLYPFSPALVQALVALSTALQRERTALKVMLMLLVQQRDTLE
LGNVIPVGDLYDVIASETKPFSDAMRQQFENAKTLFERKLIPLLESDHNL
KYADFDSIPDTDSAKRAFNNDLRLIKTLLLSALVPEVECFKQLTANKLAA
LNHGTIKSPIPGKEASMVLSRCRKWAGQVGEIKISDDTNPTIALQLSGVD
TASILEQANSYDNDGARRKLVKDMVFAALGVQETDDMFQETTHKFTWRGT
TRTVEVLFYNIREITDFTLFEARGDDWKVIVDFPFDRDNHTVSDDRARIQ
EYESHSSPTRTLCWLPYFFSQTAQKDLGTLVRLEYVLKTDDRFSSFSKHL
SPVDRGQARTLLENQRSQLRQRIKDYLLGAYGASERISGSLDDGAGSLDS
QIISLEEGFKPRLPFGSTLGKAFENLLGQALEHQYPEHPEFDSEIKLTDL
GKVFEQIRRAIFAQNHRIDVETPMRPLMRSIAQPLKLGEMHERHFIFKPD
WPNQLTRGLAKQQQTGEAITVKRIREAIDQPSPKGLPEIVQNLLIQIFAE
FGQYAYSFHGGSYDVTLKDMPDNLELIKQDLAEPDQWQKGSHNAAEIFGI
TVSPLRTANNQNELQKHIREEIRSCLPNCESLAQHISKRLDWLKQPLTGN
RIRNAQYALEVLRELQAAEGATLVKVLAGIKPITNLLALGKSMTTAGSVV
QTIQDNNWELLETVWNGNDPAGKAIRQRVCDALAADELVTALSPAFRQAQ
QDATRLIAQNTPPALPEPTPEPKNPKVRVIKQDNKTGLNRDAAKALFAEI
EGAMSTGETLELSYRILHTDDSAGGNS
>HCH_02201 Nucleotidyltransferase/DNA polymerase involved in DNA repair
MDANTSASRSGVDSGMLLNTAFCLCPALRVLRIKSYKQTQAIHRTAQVAS
RFSSWISLDEPDGLYLEVASMKRLYTNPSQLRQAIQQAFSTFKITVLSAT
APHPKAAHLLARSGIERDVNAESFWRTLKRLKLDRLNLESRIEYKLRKVG
LKSIYDIAKLPSCDLAYRIDVDLALYLDHALGRKPWRPSPFSPPRHFKKR
LDLEQEFESLQPLLFYLAKVVKEFCLFLQERCLTCQSLEVRLIHRHQTPT
QENIRLAQGDNRPESWLYILNKSLERIELTAPVIMIELFASHFEAAPQQS
EYLFAHFNENIAAEKTRLLNRLTARLGSDRVHFLNLTTDHRPELRTQQTP
LPALVKYPLSQASPQPLWLLPSASPVDIEFYRLLYGPLRIDSGWWDKDAI
KRDYYVAATPTNNLHWIFHTPEKQWFRHGFFS
>HCH_02818 cas1, CRISPR-associated protein Cas1
MKKLQNSLYVTRQESYLHKERETIVIKQGKDKLAQFPAHAVANIFCFGQI
SVSPFLMGYCGEQGIGLVFFTEYGKFLARIQGRQSGNVLLRREQYRVSDK
DTPRLDIARSIVLAKIANSRRVLQREVRNKGAHPSLDEAIARLANCLRRC
ERPDNLDILRGLEGEAAAIYFGVFNQLLKQDGFDFKGRVRRPPTDPVNAL
LSFLYTLVAQEISSALQGVGLDPYVGYLHVDRPGRVGLALDILEEFRAWW
CDRLVLTLINRKEVKASDFDIEASGAVRLKEDARRKVLVAYQEKKQEEIS
HPFLNEKVQVGLLPHCQALLLARHLRGDLQHYPPFSTR
>HCH_02375 comEA, DNA uptake protein and related DNA-binding protein
MQKLLSVIFFAFTLAFANVSFATDSAPQQTQSAEQQNVVNINTADAEALA
KALNGVGLKKAEAIIEFRTTNGPFKDISELALVKGIGEKTVEKNRSLIVL
E
>HCH_04322 dinP, DNA polymerase IV
MRKIIHIDADSFYASVEIRDNPSLRHLPVAVGGSPDKRGVIATCNYNARA
FGVRSAMSSAKAVLLCPDLVFVRPRFEVYRSVSKDIHTIFRDYTDLIEPL
SLDEAYLDVSECKACKGSATLIAEEIRARVRQDLRLTVSAGVAPNKFLAK
IASDWNKPDGIFVIRPQDVKDFIPQLPVRKINGVGKVTAAKMEALGITTC
GDLQRLSKDDLERHFGSYGERLYNLSRGVDNRPVQTEWVRKSLSVEHTYD
HDLQNLDAILDSCEPLFEELLERFNRISDAYLVSKRFVKVKFADFTQTTL
EELLPGYSGQWRSLPDYLRLMSAAWARQKKPVRLLGMGVRLRDPKNNNLG
EQLSLF
>HCH_00002 dnaA, chromosomal replication initiator protein DnaA
MTSELWHQCLGYLEDELPAQQFNTWLRPLQAKGSEEELLLFAPNRFVLDW
VNEKYIGRINEILSELTSQKAPRISLKIGSITGNSKGQQASKDSAVGATR
TTAPSRPVIADVAPSGERNVTVEGAIKHESYLNPTFTFETFVEGKSNQLA
RAAAMQVADNPGSAYNPLFLYGGVGLGKTHLMQAVGNAIFKKNPNAKILY
LHSERFVADMVKALQLNAFNEFKRLYRSVDALLIDDIQFFARKERSQEEF
FHTFNALLEGGQQMILTCDRYPKEIDHMEERLKSRFGWGLTVMVEPPELE
TRVAILMKKAEQANVHLSSESAFFIAQKIRSNVRELEGALKLVIANAHFT
GQEITPAFIRECLKDLLALHEKQVSIDNIQRTVAEYYKIRIADILSKRRT
RSITRPRQMAMALAKELTNHSLPEIGEAFGGRDHTTVLHACKVMIELQQS
DPTLRDDYQNFMRMLTS
>HCH_01714 dnaB, replicative DNA helicase
MNESVIRKDSTKSEGQGPGGAALVSSSAVKAPPHSIEAEQSVLGGLMLDN
ASWDKISDIITAKDFYRLDHRLIFGSISRLANLGSPLDAITVSEELDNRN
ELNSAGGLAYLSELAKNTPSAANIRAYAEIIRERSVLRQLITVANEIADE
AYQTEGRTSTEVLDDAERRVFQIAESRPNQGGPESVNPILTKTLKKIDEL
FHSDGAITGVTTGFRDLDDRTSGMQASDLIIVAGRPSMGKTTFAMNLVEN
ALILGGKPVLVFSMEMPSDSIVMRMLSSLGRIDQTKVRSGKLDEDDWPRL
TSAVNMLKDKPLYIDDTAALSPTEMRSRARRVARDHNGEIGLIMVDYLQL
MRVPGMTEGRTAEISEISRGLKALAKELNCPVVALSQLNRSLEQRPNKRP
VNSDLRESGAIEQDADLIMFIYRDEVYHEDSPDKGIAEIIIGKQRNGPIG
TVRLAFMGRFTRFEDLAHDYGGDYE
>HCH_01861 dnaE1, DNA polymerase III, alpha subunit
MGDFIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVK
YYKAASGAGVKPIVGADVWVENLDDPLAPFRLTLFARNETGYRNLTELIS
RGFTEGQSHGRAIMKKDWIAAQAEGLLALSGSKYGDVGQALLAGKQELAR
ERLGVWMEMFPDAYYLELQRTGRINDEECVHASVELALETGCPVVATNDV
HFLERDDFEAHEARVCIHEGRTLDDPRRERRFSEEQYLKTAEEMCELFSD
IPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTIDEFFIKVSEEGLE
ERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMDFIKW
AKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMP
DFDVDFCMEGRDRVIAYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQG
RPYSMGDRLSKLIPFEVGMTLAKAYEQEEPLREYLTTDEDAAEIWEMARK
LEGVTRNVGKHAGGVVIAPTKLTDFAPLYCDETGSGLVTQFDKDDVEQAG
LVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLDINFIPLDDAPTFNLL
KHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQSGMVDD
FINRKHGRAELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGY
TLGGADLLRRAMGKKKPEEMAKQKAIFVEGSINQGLEQDLAEKIFDLVEK
FAGYGFNKSHSAAYALVSYQTAWLKCHYPAPFMAAVLTADMQNTDKVVTL
VEECRRMKLELVLPDVNNSSYTFTVDDKHRIVYGLGAVKGLGEGPVQSIL
DARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRSGAMDKLGPSRARMMA
SINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEWSDKER
LKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNVAGLVVA
VRTMKSKRGGYIGFATLDDRSGRIEVTFFSDAYEQAKEMLHNDRILVVEG
VVGEDDYSGGLSVRAKMTSDIGQARLKFAKELILFVHEKDFNNGFIDELG
GVLGEHRAEGCPVLINYETETARTRLRLAEDWRVNPSDELIQGLRYLLGK
ERVQLRYS
>HCH_02200 dnaE2, DNA polymerase III, alpha subunit
MSFVELHCISNYSFLKGASHPEELVRQAIAQGYEGLAITDECSVAGAVKA
WRELRRLRQEAPEASAFKLIIGSEFHYEGNCFVVLAPHKKAYGELCRFIT
DCRRKADKGDYQFSPDALNENIKQGLLLWRPKQSDQEFIPALTKIFSGRL
WLLLELSLSEEDDSERELIQTLSSAYNLPVVSSNGVKMHAPERKRLHDAL
TAIRFNQSVDSIKDRLAPNAENYLRPLNEIHEIYPSFTIQESLRIAAKCA
FELNEIRYQYPKEVVPEGDDPSAYLRRLTYEGAHLRYPQGIPENVLATLE
KELNIISELQYEYYFLTIFDIVDYAKKSQILCQGRGSAANSVVCYCLGIT
AVDPTRASLLFERFISKGRDEPPDIDVDFENARREEVIQYLYRRYGRERC
AIAATVITYRPKSAIRDLGKALGVDLLQLESVIANYGWRYRGQDWIDEVI
TPQVSQDNHILTCFKELLPELLGFPRHLSQHVGGFVLSAGPLVELVPIEN
AAMEDRTVIQWDKDDLESLGLMKVDVLALGMLTALKKCTTYISEITGKTF
SLESIPKEEDSQVYDMLQRADTVGLFQVESRAQMNMLPRLRPEKYYDLVV
QVAIVRPGPIHGDMVHPYLRRRHNLEDPDDVPLPELKPILKRTFGVPIFQ
EQVIAIAIVGAGFTSEEAEELRRSMASWKRRGHMGKLMDKLIINLLKKGV
PLEYIQRLCRQIEGFGEYGFPESHAASFALLAYHSGWLKYYYPSAFCCAL
LNSQPMGFYAPWQVIQDAQRHGVIVLPVDINNSYWEHRLEPHSDNTKEGA
LRLGFRLVKGLSEEAACSIIQHRTDEGFTSLVQVMHLPKINREDLEALAS
ANALASLGENRYQQRWECSGFLYYYQLFSECEYINIDFEPPSRLDNIYED
HSSTGVVLNDHPLAYLREANLTPQCLTAVELLKQKAGLKTYVAGVVINRQ
RPKTSTGVTFVTLEDETGSINILVWKKTAIAQMDILVKARLLMVYGELDK
DEEGRVAHVLAHRLTDLTPHLEELESRSRDFH
>HCH_00003 dnaN, DNA polymerase III, beta subunit
MKLTITREALVTSLQMISGVVEKRQTMPVLANVLLDARDGKLVITGTNME
VELVAEISDVNIEHESRITVPAKKFTDICRALPEGAAIGIELKDGRLNVR
YGSSHFILSTLPAEHFPNVEEEPESVKVTLPQRELKRLIDATAFAMAQQD
VRYYLNGMLMELDEQGLRTVATDGHRLALANVSLQTGVSEKRQPIVPRKG
ILELGRLLNDTDESCTLVFGDNHVRASVGHFTFTSKLIDGKFPDYQRVIP
RSGDKVMLADRVLLKGVLSRASILSHESIRGVRLQFEEGLLKVFANNPDQ
EEAEDSLEVEYPHEALQIGFNVGYLIDVLNALDDEQVKVTLSNANSSALV
EGVDTRDAVYVVMPMRL
>HCH_02528 dnaQ, DNA polymerase III, epsilon subunit
MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPEREVD
AGAFEVHGISNEFLADKPKFKQVAQDFLDFISGAELVIHNAAFDVGFIDY
EFSLLGAPFGKVSDYCSVVDTLMMARKKHPGQKNNLDALCKRYGIDNSHR
DLHGALLDSEILADVYLAMTGGQTSLSLHSEDGGTEEEASEVRRINTQRP
SLRVIRASEAELAEHARQLDAVEKAAGFSLWRKKQEEGLN
>HCH_02613 dnaX, DNA polymerase III, gamma/tau subunit
MAYQVLARKWRPGNFAEMAGQEHVLKALTNALNQDRLHHAYLFTGTRGVG
KTTVARIFAKCLNCEQGVSAIPCGECGVCREIAEGRFVDLIEIDAASRTK
VEDMRELLDNVQYAPTRSRYKIYLIDEVHMLSNSSFNALLKTLEEPPPHV
KFLLATTDPQKLPVTILSRCLQFNLKNLSPQRIVSHLTHVLQAENVPAEE
AALWELARAAEGSMRDAMSLTDQAIAFGDGKLEAKDVIEMLGTIEKHVVI
DLLRTIAAQDCAAMLAQVNHMAQFAPDYAYVLQALAELLHRVAVEQAVPG
GVDNSFGDQQQVSELAQTLTAEDTQLYYQIALMGRKDLALAPDPRTGFEM
ALLRMIAFRPNIKSARQIQAPSAASSAASADDDKESAQPGPSQTETAVAA
QPAPAVEATPEPRQEIAAPQPEPPQQVAEKRDTPSPQEPPRQGLSQQGPQ
KQEPSNQGEAPVIDAAPVTPAQPIERPPPGHSEAEPPPVDDYDAYFADDP
GPSDADYGFSGYPAETGYPDDGSHAAPVANPQPKEERPQAAAPAREPQGR
EAIAPPPKSVTESVPGLHPGPGEAGSVNTTPPVVAANSVKKSPAGPLTPP
LEGEPTMQGMVWKDAVKRLAISGMTATLAQRCALEAVTPGLVIFTIDREH
LDFFNEAQRERLRAAVSEFMGEAVKIEVSAGESKWLTPLQYAERRRAELQ
QQAETAIRNDPNIQMMAGRFGAAVIENSIEPIIQE
>HCH_04983 gyrA, DNA gyrase, A subunit
MAELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLF
AMNELGNDWNKSYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
TLVDGQGNFGSIDGDSAAAMRYTEIRMEKIAHEMLADLDKETVDFAPNYD
GSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVVNGCLAYLDN
SDITIDELMEFIPGPDFPTAAIINGRAGILEAYRTGRGRIYIRARYEIEQ
DKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEG
MRVVIELRRGENADVLMNNLFALTPLETVFGINMVALINGEPKLLNLKDC
IECFVRHRREVVTRRTIYELRKARERGHILEGQAVALANIDPVIAVIKAS
STGAEAKERLMAQGWAPGAVTGMLERAGEDACRPDDLAPEFGLREGLYYL
SEVQAQSILDLRLQKLTGLEIEKINDEYRSIIEQIAELLEILQNPERLMA
VIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVVTLSHKGYAK
TQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLY
WLKTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTADHYVFMAT
RQGTVKKTPLENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSS
GKAIRFNEDDVRPMGRTARGVRGIRLAQGQTVVSLIIPQEDAYILTASRK
GYGKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISGDQLMLISN
QGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPEEDESDFQ
GEEGEGVEAVDGDDLDSGDAGEEGSEAEE
>HCH_00008 gyrB, DNA gyrase, B subunit
MSSSGNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSI
DEALAGYCKEVKITIHADESITVSDDGRGIPVDIHEEMGVSAAEVIMTML
HAGGKFDDNSYKVSGGLHGVGVSVVNALSKELRLTIRRDNKVHEQVYKHG
VPQAPLSVVGETDRSGTEVHFFPSAETFNNIEFHYDILAKRLRELAFLNS
GVKITLHDERSAKTETFEYEGGLRAFVEYLNQTKNPINKVFHFLKEREDG
TAVEVSLQWNDSFQENIFCFTNNIPQRDGGTHLAGFRAALTRSLNSYIEK
ESMLKKTKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV
EQEMNAYFADFLAENPQDAKNVVNKMIDAARAREAARKAREMTRRKGALD
IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKTQAILPLKGK
ILNVEKARFDKMLSSAEVGTLITALGCGIGREEFDVNKLRYHSIIIMTDA
DVDGSHIRTLLLTFFFRQMREIIENGHVFIAMPPLYKVKRGKQEQYVKDE
KALQQYLTQSALENTQLFVNPDAPPIIGTALETLVTDYRTATGVIERMSR
AYPRGVLNQLLYVPRLTQEQLKDKSAVETWVALLNEKLGYDNSTGNNYVI
SVVEDAERSLFLPQVELVQHGVDYKYTFNQDFFGSSSYTNIADMAEKLDG
LVEAGAYVKRGEKTQAIETFDDSLVWLMKEAQRGLNIQRYKGLGEMNPEQ
LWETTMDPAVRRMMKVTIEDAIAADQIFNTLMGDDVEPRRDFIQTNALSV
MNLDV
>HCH_05357 holA, DNA polymerase III, delta subunit
MRIKPEQLQSNLNKHPPAVFVVSGDEPLLRQEACDEIRAFSRKQGFSERI
VFHAPKNFDWSALDEHTQSFSLFGEKKLLEVHLDSLPNDGGKKRLAAFSE
NPPEDCLMLIISDRIESSTLNTKWFKSIETHSLHVQVWPVSHDQLPNWIN
QRLHKLGFTPTSGAVKALCDHVEGNLLAARQEMEKLRLLSDDANLDEEQV
LRGISNSNKFTVFNLVDACLERNPKQALKVLQTLQAESFEPSIVLWSLAR
EVRLLAKLYKHSQTSQGLEQALQKERVFKNRWTLYKRFIPRFNAARLRNI
HQACQAADRSIKGLDSTPVWSTLTYAALELAGAGLSAS
>HCH_02670 holB, DNA polymerase III delta prime subunit
MSDLTEISLDQLPWLSKTWRDWVGLAHNDKVPSAILVAGQSGVGKNRLTS
EYAKFLLCEQAKRLERPCGDCRSCKLIEAGTHPDLQWVAPEDGAKAIKID
QVRGLGDFIYAKPQISRRRICVLTPAEAMNAYSANAILKTLEEPPASVVI
LLVSQQISLLLPTIRSRCQIYTLAAPDRESVVNWLTQLDVPKERAYSLTE
SAGGRPLTALAWHSQDILELRAEVLADWLNYLEGRVDAFTLAETWSKLDL
ERLADWLAIWLKQLLTATQIGEGEGSETEATLAGVGARLDTQQLVSLYAE
LIEIKRSLVEQRNLNPQLMLESWLLANKRVRKRRK
>HCH_01930 holC, DNA polymerase III, chi subunit
MPKADFHLLSSGDIAQRDFYLCRLCEKIYRLGHRIYILCKDSKELEHLDD
LLYSFRPESFIPHSIEPEPPSSDIPVFLCTRLPETISTEVVINLTEAPPD
KADRVIELVTGDPGARAKSRKVYKLYKQLGFELQTYNIESA
>HCH_02648 hrpA, ATP-dependent helicase HrpA
MSSETRFDPSLVLIKDRFRLQRQWREIAKGSVAEKDVEKFWRATLRSMEI
RAARLQAMPQVRYPDNLPVADKLEEIKKAISENQVVIIAGETGSGKTTQL
PKICLDLGRGVEGLIGHTQPRRLAARSVANRIAEELGCEVGKQVGYQVRF
TDHTDDSTLVKLMTDGILLAETQNDRFLNRYDTIIIDEAHERSLNIDFLI
GYLKNLLPKRPDLKVIITSATIDLDRFSEHFNGAPVVEVSGRTYPVELHY
RPLTTMDDEVDIGLQDGVVHVIREIERMEREQRKPPGDILIFMVGEREIR
ETAQRLRKEEFRNTEILPLYARLSNQEQNRIFQSHGGRRIVVSTNVAETS
LTVPGIRYVIDPGQVRISRYSYRSKVQRLPIEAISQASAEQRKGRCGRVA
EGVCFRLYSEEDFNGRDPFTDPEILRTNLASVILQMLSLRLGDIQKFPFM
QKPDKRYINDGYKLLEELGAVNAQRQMTPIGRTLARFPIDPRLARMLVAA
AEGHCLKEMLIIVSALAVQDPRERPMEFQQAADEKHAQWADEQSDFVSLL
NLWNGYETQRQELSANQLRNYCKKNFLSFLRMREWRDTHRQLLLLCHEQN
YKENTEPAAYDELHQALLAGLITQIGQKDEKGEYAGPRQRKFVIFPGSKV
RKKAPNWIMSAEVVETSRLFARTVARMEPGWIEKVAPQLLKSSYLEPHWS
KKRGEALAFQQVSLYGLIVVPRRQVSYGRIDPQFSREALIREGLIEGEIN
SRLPFILHNAECREEVEQIEAKARRRDLLVDDEVLFQFYDEQLPADITTV
KGLEYWYKRLPDGDKKALLLSPEALLRVLPEVKLEEQFPDALLWNGQQFQ
LSYRFEPGAKDDGVTVRMPAAAMAQAPVGLLDWLAPGMRKEKCEALIRSL
PKAIRKNFVPVPDFAKAASDAMVPDNHPMSLALGEQLRKMTGIQVAPEQW
DESLLPPHLRMNIQVVDSQGGVIDQGRDYHELVKRLEGRLEKLAQESDSL
FKEKAGLTEWTFGVLQEKVAVSQAGASLFLYPYLQDQGATVALKSAFDAG
FAQAQHRLGMARLIMLRLADTVKYLKKNLPKRKEIGLYYAPTGKLDGLVD
ELALTACIEVFLKDKPAIANADEFARRVQQYKADLIPKAEELALLLHEIL
QAYHRITKALGKNTVLALAMFLGDVKRQLQHLIYPGFLTEAPLEWLRQYP
RYLAAIEERLDKMPRQIAQERQFQLMFETLWSQYNARKEKHQREGYVDEE
LANFRWMLEEFRVSYFAQKLGTLMSVSEKKLQKQWEKVRI
>HCH_05855 hrpB, ATP-dependent helicase HrpB
MLPIDHIIPELLTTLEAHSTVLLQAPPGAGKTTRVPLALLDSPWRGERKI
LMLEPRRLAARSAARYMAKQLGEPVGRRVGYRTRQDTKVSADTRIEVVTE
GILTRLIQSDPALEDYAAVLFDEFHERSLQADLGLALVRESQQALREDLR
VLVMSATLDSAPLAKLLDDAPVLTSEGRAYPVDVRYRPLQREQRPVEKVV
AVVREALAEESGSLLVFLPGVGEIRRAHDLLAEHLPSGVRLAPLYGNLKA
EEQDQAILPCAEGERKVVLATAIAETSLTIEGVRVVIDAGLQRRAVFDPN
SGMTRLSTGRVSKASAEQRKGRAGRLEPGVCYRLWSETEQQGLASYTPAE
ILEADLAPLVLELAQWGARQPQDLVWLDPPPKAHWRQAVDTLRWLDALDE
TGAITSHGENLREFGIHPRLAHMVVMGKAIGAPVLAAEVAALLGERDLLG
RDVGADLQQRVRALRGEYKGAKLDRRRLESVRQDTRKLVNGNARDDLGLE
AAGRLLAFAYPDRIARRRQGSSPRYQLSNGRGAALAEEDPLGRETWLVAA
DLDGQARESRIFLAAALNPADIEMGLSAHIVTEDMADWDDQRGAVVARRV
KRLGALILEERPVAVGPELIREALLTAVRRKGLDSLPWSDAARQWRARVG
LMRKQQPDAWPDLSDDALLAELENWLGPFLNGVSNWAGLQKLDVLSALKT
LIDYTAQHTLDAQAPVVLTIPTGQKVTLDYRAENGPVLAAKLQALFGWTE
TPRVAGGRVPVVIHLLSPSQRPLAVTSDLASFWRNSYPDVRKDMRGRYPK
HPWPEDPLTAEAKQGTKKQQF
>HCH_04573 ihfA, integration host factor, alpha subunit
MGALTKADMAERLYQEVGLNKREAKEMVEAFFDEVRDALSHNEQVKLSGF
GNFDLRDKKQRPGRNPKTGEEIPITARRVVTFRPGQKLKAKVEAYAGTQS
>HCH_04977 ihfB, integration host factor, beta subunit
MTKSELVEIIAQKQPQLSIKDVELAVKTIIEYMSQSLSQGQRIEIRGFGS
FSLHYRAPRVGRNPKTGETVHLPAKYVPHFKPGKELRDEVNASLKAGY
>HCH_01179 istA1, transposase, IS21 family
MPAKRLSMRKIKEVLRLKWERGLSNRQVAEACGISRPTVSEYLRRAAEAD
VSWPLPENLSGAQLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLF
LLWQEYREANPNGYQYSWFCEHYRIWRGKLDLVMRQDHRAGEKLFVDYAG
HTVPVIDRTTGEIHEAQVFVAVMGASNYTYAEATWSQSLPDWIGSHIRAF
EFLGGTPELVVPDNLRSGVSKAHRYEPDLNPTYQDMAAHYGVAIVPTRVR
KPRDKAKVEGGVLIVERWILAALRHRQHFSLGQLNATIRELLETLNNRPF
RKLPGCRLDHFKQLDKPVLQPLPAEPYVYAEWRKARVHIDYHIAIDGHYY
SAPYTLIKKEVEVRMTHNTIKCFYRGNRIASHRRSDQKGRHSTIAAHMPE
SHRQAGEWSAERLIAWAAKTGLATEKLIRTALGARKHPQQAYRSCLGILR
LGRSYGETRLEAACQRALTLGSYRYKSIESILKHRLDQQPLEEQQELALP
DTHDNIRGPAYYH
>HCH_05635 istA2, transposase, IS21 family
MPAKRLSMRKIKEVLRLKWERGLSNRQVAEACGISRPTVSEYLRRAAEAD
VSWPLPENLSGAQLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLF
LLWQEYREANPNGYQYSWFCEHYRIWRGKLDLVMRQDHRAGEKLFVDYAG
HTVPVIDRTTGEIHEAQVFVAVMGASNYTYAEATWSQSLPDWIGSHIRAF
EFLGGTPELVVPDNLRSGVSKAHRYEPDLNPTYQDMAAHYGVAIVPTRVR
KPRDKAKVEGGVLIVERWILAALRHRQHFSLGQLNATIRELLETLNNRPF
RKLPGCRLDHFKQLDKPVLQPLPAEPYVYAEWRKARVHIDYHIAIDGHYY
SAPYTLIKKEVEVRMTHNTIKCFYRGNRIASHRRSDQKGRHSTIAAHMPE
SHRQAGEWSAERLIAWAAKTGLATEKLIRTALGARKHPQQAYRSCLGILR
LGRSYGETRLEAACQRALTLGSYRYKSIESILKHRLDQQPLEEQQELALP
DTHDNIRGPAYYH
>HCH_06236 istA3, transposase, IS21 family
MPAKRLSMRKIKEVLRLKWERGLSNRQVAEACGISRPTVSEYLRRAAEAD
VSWPLPENLSGAQLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLF
LLWQEYREANPNGYQYSWFCEHYRIWRGKLDLVMRQDHRAGEKLFVDYAG
HTVPVIDRTTGEIHEAQVFVAVMGASNYTYAEATWSQSLPDWIGSHIRAF
EFLGGTPELVVPDNLRSGVSKAHRYEPDLNPTYQDMAAHYGVAIVPTRVR
KPRDKAKVEGGVLIVERWILAALRHRQHFSLGQLNATIRELLETLNNRPF
RKLPGCRLDHFKQLDKPVLQPLPAEPYVYAEWRKARVHIDYHIAIDGHYY
SAPYTLIKKEVEVRMTHNTIECFYRGNRIASHRRSDQKGRHSTIAAHMPE
SHRQAGEWSAERLIAWAAKTGLATEKLIRTALGARKHPQQAYRSCLGILR
LGRSYGETRLEAACQRALTLGSYRYKSIESILKHRLDQQPLEEQQELALP
DTHDNIRGPAYYH
>HCH_06335 istA4, transposase, IS21 family
MPAKRLSMRKIKEVLRLKWERGLSNRQVAEACGISRPTVSEYLRRAAEAD
VSWPLPENLSGAQLEQLLFPPPPDLPAQARGIPDWRRIHEELRGKNVTLF
LLWQEYREANPNGYQYSWFCEHYRIWRGKLDLVMRQDHRAGEKLFVDYAG
HTVPVIDRTTGEIHEAQVFVAVMGASNYTYAEATWSQSLPDWIGSHIRAF
EFLGGTPELVVPDNLRSGVSKAHRYEPDLNPTYQDMAAHYGVAIVPTRVR
KPRDKAKVEGGVLIVERWILAALRHRQHFSLGQLNATIRELLETLNNRPF
RKLPGCRLDHFKQLDKPVLQPLPAEPYVYAEWRKARVHIDYHIAIDGHYY
SAPYTLIKKEVEVRMTHNTIKCFYRGNRIASHRRSDQKGRHSTIAAHMPE
SHRQAGEWSAERLIAWAAKTGLATEKLIRTALGARKHPQQAYRSCLGILR
LGRSYGETRLEAACQRALTLGSYRYKSIESILKHRLDQQPLEEQQELALP
DTHDNIRGPAYYH
>HCH_01178 istB1, IstB helper protein, IS21 family
MLKHPTLDKLHALKLTGMAAALEDQSATPDISDLSFEERLGLLVDREMTE
RDNQRMSSRLRRAKLRHAAILEDLDYRNSRGLDKGLVQSLAGCQWVKERL
NVLITGPTGVGKTWLACALAHKACREGYTAQYVRLTRLLRELIIAKGDGQ
YSKLLTSLAKVDVLILDDWGLMKLSAENRRDLLEVLEDRHGGRSTIATSQ
LPIEEWHGLIGDATLADAILDRLVHNAYKINLRGESMRKQQAKLTGAETL
E
>HCH_05636 istB2, IstB helper protein, IS21 family
MLKHPTLDKLHALKLTGMAAALEDQSATPDISDLSFEERLGLLVDREMTE
RDNQRMSSRLRRAKLRHAAILEDLDYRNSRGLDKGLVQSLAGCQWVKERL
NVLITGPTGVGKTWLACALAHKACREGYTAQYVRLTRLLRELIIAKGDGQ
YSKLLTSLAKVDVLILDDWGLMKLSAENRRDLLEVLEDRHGGRSTIATSQ
LPIEEWHGLIGDATLADAILDRLVHNAYKINLRGESMRKQQAKLTGAETL
E
>HCH_06235 istB3, IstB helper protein, IS21 family
MLKHPTLDKLHALKLTGMAAALEDQSATPDISDLSFEERLGLLVDREMTE
RDNQRMSSRLRRAKLRHAAILEDLDYRNSRGLDKGLVQSLAGCQWVKERL
NVLITGPTGVGKTWLACALAHKACREGYTAQYVRLTRLLRELIIAKGDGQ
YSKLLTSLAKVDVLILDDWGLMKLSAENRRDLLEVLEDRHGRRSTIATSQ
LPIEEWHGLIGDATLADAILDRLVHNAYKINLRGESMRKQQAKLTGAETS
E
>HCH_06334 istB4, IstB helper protein, IS21 family
MLKHPTLDKLHALKLTGMAAALEDQSATPDISDLSFEERLGLLVDREMTE
RDNQRMSSRLRRAKLRHAAILEDLDYRNSRGLDKGLVQSLAGCQWVKERL
NVLITGPTGVGKTWLACALAHKACREGYTAQYVRLTRLLRELIIAKGDGQ
YSKLLTSLAKVDVLILDDWGLMKLSAENRRDLLEVLEDRHGGRSTIATSQ
LPIEEWHGLIGDATLADAILDRLVHNAYKINLRGESMRKQQAKLTGAETL
E
>HCH_04729 ligA, DNA ligase, NAD-dependent
MSEVPAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIE
AEFPQTITPDSPTQRVGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDR
RVRERLKEAEDARIDYCCEPKLDGIAISLLYRDGYLVRGVTRGDGSAGED
ITANVKTVKNIPLKLRGEGYPAELEVRGEIYLPKAAFDAINKDAAAKGEK
TFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGELPGTQHDILTQ
LQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRID
LQQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKP
VFVGGVTVSNATLHNMDEIRRLDVHIGDTVIIRRAGDVIPQVVSVVQDRR
PENAVPVDRPEHCPVCGSDVLQLEGEAVARCSGGLYCSAQRKEAIKHFAS
RKAMDIDGLGDRLVELLVEKELIDSPASLYSLKAPDVAGLERMGEKSAQN
LINAIEASKQTTFARFIYALGIREVGEATAKVLAQHFPTLDLLKQATEED
LVEAPDIGPISAGHIRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLP
LSGQTAVVTGVLADYSRDEAKDLLTRLGAKVSGSVSAKTGFVVAGEKAGS
KLTKAQDLGVKVLDEDAFKQLLEEHQAHLGGEA
>HCH_02683 mfd, transcription-repair coupling factor
MTERRQLPSNSTTIKYWPQAVGQSDAYILAQALKEQKRLLVVITPDMPSA
DQLESAVKFFLGDAKKNESTPPILTLPDWETLPYDTFSPHQDIISQRIQT
LHNLPTCASGLLIVPLSTIMVRLAPKEFVQRSTLILRKGQPLRIDSYRSE
LEQAGYRCVDTVYEHGEFAVRGSILDIFPMGSKAPFRIDLFDEEVETLRQ
FDPETQRSASQVDEISLLPAHEFPLNEASIQLFKDNFYEKFPGASRNIPL
LQDISRGIATPGLEYYLTLFFTETASLLDYVARDACFALYDGLHEKALHF
WKDLEQRYEDLRHDIQRPILPPADIYLRVEELFEGLKQFPRAQFSAKSEE
SDKPFAPLPHLALDAKKENPLQAIDCAQQDTGYKIILCAESAGRQQALMD
TFKEHGRPLTLLESWEACLNSNERWNITVAELAKGFADNENQILVVAEAD
LYEGRVLQRRRRKRAQESPENIIQNLTELKLNAPVVHIDHGIGRYKGLQS
LEVDGQKQEFLVLEYANEAKLYVPVSSLHLISRYAGLDDKLAPINKLGTD
RWSAAKRQAAEKIKDSAAELLEIYAKRELHTGYACPPPDEHYRAFSAAFP
FEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHA
GRQVAILTPTTLLAQQHFQSFQDRFADTAINIELISRFRSAGDIEKVKDK
LSDGKVDILVGTHKLLQKDIQFKNLGLLIIDEEHRFGVQQKEKVKSLRAN
IDILTLTATPIPRTLNLSFQGVRDLSIIATPPEKRLSVKTFVQEHNNSII
KEAVLREILRGGQVFFLHNEVNTINKAASELQEMVPDARVAVAHGQMRER
ELERVMSDFYHKRFNVLMCTTIIETGIDIPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISSAQDLGAGFTLATH
DLEIRGAGELLGEEQSGHIQNIGFTLYLQLLDAAVKAMREGKELDLTQPI
DQGCEVNLRLPALIPDDYLPDVHNRLILYKRIASAKDEDALQSMQIEMID
RFGLLPDATKNLFRQAHLKLTADRLGMARIDIGAKGGVIEFNAKTTIEPI
KLVNLIQREPKHYKLDGGSKLRVTRSLEDKEDRMQFVEKLLKSFAPARA
>HCH_00567 mutM1, formamidopyrimidine-DNA glycosylase
MPELPEVETTRRGVAPHITGRKILQVNIYEPRLRWPVPMDLPAAAQGKTV
LNVTRRAKYLLINLGDDELLFHLGMSGNLRIVAPETPRMKHDHVDILLEG
DITLRYNDPRRFGCLLLLNPPTQEHPLLKHLGPEPLSDQFSGELLYKRSR
QRKSPVKTFLMDQAIVVGVGNIYANEALFLAGIRPTRAAGEVSLKRYQVL
AEAVRKVLSDAINMGGATLRDFVGGDGKPGYFQQTLRAYGRGGQPCTVCQ
TELKEIKLGQRTSVFCPSCQR
>HCH_02013 mutM2, Formamidopyrimidine-DNA glycosylase
MPEYPDITVYIDALERRVLGRVLESVELHSYFLLRTAEPSLEAVVGAKVT
QLRRIGKRIAIGFDNDVWMVFHLMIAGRLHWRDAGKKTPGKNALISLQFP
NGVLFLTEAGTKKRASLHLVSGERGLAQINPGGLEILEADLPAFQQALTR
NNHTLKRALTDPHIFSGVGNAYSDEILHAARLSPIAQTQKLNAEEIERLY
QACRSCLTTWTQRLRDQYGDAFPEKVTAFREDMAVHGRYNLPCPVCGGAV
QRIRYATNETNYCPDCQTGGRLLADRALSRLLKKDWPRSVEELEKVRGKN
DH
>HCH_05234 mutS, DNA mismatch repair protein MutS
MAMAFPYNPAFIHKITQSFCSVMSAIESAIKPQHTPMMQQYLGIKAKHPH
QLVFYRMGDFYELFYEDARRAAELLDITLTQRGQSGGQPIPMAGVPFHAA
EGYIGRLVRLGESVVICEQVGDPAASKGPVERKVVRVVTPGTLSDEAFLE
EKSDNLLLAISAYKDLFGLATLDIAGGRFLIQEVRGVEALASELQRLRPA
EILVSEQFPFLTLLENYTGVQKQPPWYFEQETAQRLLCQQFRTKDLAGFD
CEGMSAAIEAAGCLFQYAQETQRSQLPHIRTMIRERREDSIILDAASRRN
LEIDVNLAGDYRHTLAWVMDKSATAMGSRMLRRWLNRPLRSQEEVRQRQN
AIKELLEDYQFEALHETLKQIGDSERILSRVALRSARPRDLARLRDTLTL
LPDLQKQMEELNDTHLRRLAKQVSEFPDIADLLSRAIEENPPVVIRDGGV
LRQGFDEELDELRSISENAGDYLLEIEKREKERTQLSSLKVGYNRVHGYF
IELSRTQSDQAPADYIRRQTLKNAERFITPELKTFEDKALSAKSRALSRE
KMLYDQILETIVEQLAPLQDSARALSELDVLSNFAERALTLNLVCPDLTD
EHMLHIEGGRHPVVEQVSQDPFVPNDLNLQDKHRMLIITGPNMGGKSTYM
RQTACIVILAYCGSFVPAAKVVIGPIDRVFTRMGSSDDIAGGRSTFMVEM
TETANILHYATRQSLVLMDEVGRGTSTFDGLSLAWACAEHLAREIQAFTL
FATHYFELTALPKTHANVANVHLTATEHNDSIVFLHTVHEGPASKSYGIQ
VAQLAGVPPQVINQAQKQLKQLESGASKPALTAPAPSLQDDLFARVEPSE
VETRLQKLDVDSLSPREALNMLYELKTMSENS
>HCH_02334 mutT, NTP pyrophosphohydrolase including oxidative damage repair enzyme
MVWSPRAVVAAIIPQDDKFLFVEEEIDGRAVLNQPAGHIEKGESIFGAVL
RETLEETGWEVELENFIGIYVLNTPDPETVYHRYCFSARALRQTGRTLDS
DISAIHWLSHTQLLNGELPLRSDLVRLCLEDYLAGRRLPLDTIRHHKI
>HCH_01340 mutY, A/G-specific adenine glycosylase
MNNPSNLQKKQPVTLSHNSTDAQDAAATNSFAARLLTWFDQHGRHDLPWQ
DPRTPYHVWISEIMLQQTQVSTVIPYFIKFMESFPTVAALAEADQDTVLS
HWAGLGYYARARNLHKAAKTIVEKFNGEFPNTLETIQELPGIGRSTAGAI
LSMGFGIRAPILDGNVKRVLCRHDAIEGWPGKREIETRLWELADAYTPEE
RVTDYTQAIMDLGATLCTRSKPACARCPMETTCQGLAQDMTDQLPTPKAG
KKIPTHERFVLVLQNEDGHILLERRPPTGIWGGLWSLPESEKNMDLPDAL
QSWKEHKRLQLTQYELASPFRHTFSHYHLILKPVIASTADIERPDDLAFI
VGESDSQWFDPDQELPGLPAPIEKWLSQKSLDRQKRLL
>HCH_00812 nfi, Deoxyinosine 3'endonuclease (endonuclease V)
MILAVDVQYEDGGGATVAGVLFEDWSDPEPARAVLTHVSEVQDYEPGQFY
KRELPCILQLLDAIHESVDLIVVDGYVTLGADDRPGLGMHLYNALQQRIP
IIGVAKKAFLDTPPDREILRGDSLKPLYVSGVGVPLTQARDWILAMHGKH
RIPTLLKRVDQLCRGSWRP
>HCH_01887 nth, endonuclease III
MNKQKRAEIFARLKAENPNPTTELEYNTPFELLIAVVLSAQATDVSVNKA
TRKLYPVANTPEAIYALGVEGLKEYIKTIGLFNSKAENVIKTCKILIDQH
NSEVPQTREALEALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTNI
APGKNVLEVEHKLMKHVPKEYLMDAHHWLILHGRYICTARKPRCGACVIS
DLCEFKEKVLD
>HCH_05404 parC, DNA topoisomerase IV, A subunit
MSMMFEEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIV
YAMSELGLSAAAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYR
YPLIDGQGNWGSADDPKSFAAMRYTEARLAKYAEVLLSEIGQGTVDWVPN
FDGSLDEPSLLPARLPNLLLNGTTGIAVGMATDIPPHNLREVTQACIHML
DHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRGSVKMRAKYT
KEGQDIVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHENPTR
LVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVL
LQEWLTFRTQTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSE
DKPKPVLMERFGLSDVQAEYVLDTKLRQLARLEEMKIRAEQDELEKERKK
LEDILGSEAKLRKLVKTELKQDMETFGDERRSPIVERKEAQAFSETDLIA
SEPVTVVLSEKGWVRAAKGHDIDAQGLSYKAGDKFLAAAKGRSHQNAIFL
DDTGRSYCVAAHSLPSARGQGEPLTGRVNPPSGAGFTHVLMGPDSMKVVL
ASDAGYGFVARLEDLQSKNRAGKALISLPKGACVSPPILLERQNNPHLVA
ISNEGRMLVFPVSELPELAKGKGNKIIGIPSARAQAREEVMSNLAVVGEK
DTLVLHAGKRFLKLTFDDLSHYLGERGRRGHKLPRGLQRVDRVEIIVDES
AEPVSPEGE
>HCH_05734 parE, DNA topoisomerase IV, B subunit
MPNSNLRPTASAPRRQSPAHAGAFPGKAVVRPIQSIAGRERRPKARRQVT
SCIQEKLLSNNYNADSIEVLNGLDPVRRRPGMYTDTSRPNHLAQEVIDNS
VDEALAGHARQVDVVLYKDGSLSVTDDGRGMPVDIHKEEGMPGVELILTK
LHAGGKFSHKNYQFSGGLHGVGVSVVNALSLNLEVLIRRDGKVHRITFAN
GDKASDLEVIDTCGKRNTGTTVTFLPDPKYFDSPKFSVLRLRHVLRAKAV
LCSGLKVTFKDENTGEKDEWYYEDGLKDYLSGATNEFVTLPQEPFIGQMA
GNTEAVDWAVQWLPEGGELVAESYVNLIPTAQGGTHVNGLRTGLLEALRE
FCEFRNLLPRGVKLSPEDVWDRCAYVLSVKIQEPQFSGQTKERLSSRECA
TFVSGVVKDSFSLWLNKHTAEAEQLAELAINNAQSRLRAAKKVARKKITS
GPALPGKLADCSGSDAMRGELFLVEGDSAGGSAKQARDREFQAVMPLRGK
ILNTWEVDSEQILASQEVHDIAVAIGVDPGSSNLEGLRYGKICILADADS
DGLHIATLLCALFVKHFRPLVEAGHVFVAMPPLYRIDVAKDVYYALDDYE
KQGILDRIVAEKKKGKPNVQRFKGLGEMNPLQLRETTMAPDTRRLVQLTV
EIADDTEEKMDMLLAKKRASDRREWLESKGNLAEIAV
>HCH_00062 phrB1, Deoxyribodipyrimidine photolyase
MTVRVVWFKRDLRVTDHGPLYHAARQGPVAPLYVAEPEYWAQPDAGERRW
GFVRETLQELDQTLSKLGQPLWFMHDSMINVLEYLKDRFGVFELYSHQET
GVQWCNRRNQIVREWCRRNGVLWREWPVCGVLRRATAAERWQAAWKDFMA
QTRYPSPKSLPMLGTSPLKPEAWPETIGADPTPCVLRQAGGRAAAAQELK
SFLQTRGINYFRDTHYPATSFEGGSRLSPYLSHGVISLREAVQQSRRALQ
IYHTHRSADWVKSMTEFLSRLYLRSHYMQQMEDEPGMESINLHKSFNGLR
EHQFDEAKFEAWKNGETGFPLIDAAMKALINYGWINYQLRGLLMSFAANQ
LWLHWREPALHMARLSTDYDPAVHFPLTQQFAGTTGMFEQKIYNPVTESH
RLDPAGKFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPI
INNEDASLIAGQRLKAHLEERLDPMETARVRAAHLRSIKLD
>HCH_01735 phrB2, Deoxyribodipyrimidine photolyase
MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDM
ADIKLDFMLRNLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQC
SALTFNEEFGVNERRRDKAVKETLNAEGLEALKFRDQSILPAGSIRTGQG
TPYAVFTPYKRAWFSQCPEHIELWPEPAKQPSPMQTPEGDVPESVSGFDK
VSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDGVSQLSPYLALG
VLSGRQCFHAAQRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRISM
TKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRL
RMICAMFLSKNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAA
PYFRMFNPVAQSERFDPNGDFIRHYAPELAELSAKLIHQPPSDVRSRLGY
PVPIVDLKASRERALQAFRELKNSTSSAHSA
>HCH_01557 polB, DNA polymerase II
MSAPLKGFLLTRQWDDLVPEQERARGGLTKSLALQFWMLTDRGPVRLIVS
DQYAVFFLESSAMPVARRILTNLLGDSSGERPPWYEKELELKDFGGQPVH
GVYLREQRNLYRVRDMLMQAGLAPMEADIHPTDRFLMERFVTGSMVVHGE
AVEKDGVLEFHNPRIKPAPYAPYFKVLSLDIETSMDGAQLYSIGLAATSY
GADVGAGAMQHRVFMVGENAEDSPDYLVYCADESEVFRRFVEWFDGFDPD
ILIGWNVINFDLRFLQKKADELNFPFHPGRGGAAMDWRQSRSDDQHFTLC
IPGRVVLDGIDTLKSATYNFESFSLEYVAQHLLGRGKLIHDPDNRGDEIT
HLFLHDKPRLAAYNLEDCQLVWEIFQHALLIEFAVERAQLTGLALDRFGG
SVASFDNRYLPRLHRAGYVAPMLPQNPVGVGSPGGYVMDSIPGLYRNVLV
LDFKSLYPSIIRTFKIDPLARIRGIEIERGQDVLREDLWDQQETVKVDRK
RLVPGFNGAVFSKDHNILPDIIGELWAARDEAKRHKNAAMSQAIKILMNS
FYGVLGTPGCRFFDHRLPSSITLRGHRILYRTKELIEQQGHQVIYGDTDS
VFVWLKEHKQSAAAEIDSVGKQLAATLNQWWRDYLMQEYGIESFLEIQFE
THFLRFVMPTIRGSEKGSKKRYAGLAARGEGEPEMVFKGLETVRTDWTPL
ARTFQKELYRRIFHNEPYEDYVRDLVSDIRAGKKDDLLYYRKRLRRRLDE
YQRNVPPHVQAARTADRIREEQGLPPRYQRGGWIEYVVTVNGPEPLEYRR
SALDYDLYVERQIEPIADGILRFMNASFQDISGGQIGLF
>HCH_05977 priA, primosomal protein N'
MSTSFVVTVALPVPLRRQFDYLPSHPTDLRENYPPGSRVQVPFGRRSLTG
VILAISDESELPISRLKPVAKVLDRAPLIPSVILQLCQWVADYYHAPIGE
VVFAALPPPLRTANADTDIISSLQETYWGATSLGLSAGNAEHLIKGAKQK
QLWGLLLKRKSMLQGDITGLGYSLTQLRALSAKGLIQPHSHIPGGGGAAP
QIIEPPQLNQEQQEALNRISSEPDSFRTILLNGVTGSGKTEVYLAWIALA
LSQRPDSQFLALAPEISLTPQLRQRFALRFGDKVAAYHSALTDKERMRVW
INILEGRTQIVIGTRSAVFLPFNDLAGIIVDEEHDSSFKQQDGARYNARD
LAILRAKEHSCPIVLGSATPSLESLMNARGGRYESVLLRQRAVNADTPSI
RLLDIKSRPLHGGISPPLLEEIKQHLTEQRQVMLFINRRGFSPTLMCVEC
GWLAECQHCDARLTYHMKAALLRCHHCDSTYSLPTCCPKCKQDSLKAVGA
GTERTEEFLETTFPDTPVIRIDRDTTQTKGSLQDKLLQIRSNEPCIIVGT
QMLAKGHDFPNLALVGIINADSGLFSSDFRAAEKTAQLLLQVAGRAGRSA
VEGKVIIQTLFPSHPLLQAIAAQDYNAICEEELHIREAGRLPPFTSMALI
RAEAPLLEAALGGLWSLKESLLELLKFNDGLQIEVHGPFPSVMQRKQNRF
HAILWLFAPQKAELRQFLKHWLRYSEGIATPSGFRWLIDVDPLETL
>HCH_05232 recA, recA protein
MDDNRKKALTAALSQIERQFGKGAVMRMGEQPREIIPSVSTGSLGLDIAL
GIGGLPYGRIVEIYGPESSGKTTLTLQVIAEAQRQGKTCAFVDAEHALDP
IYAEKLGVNIDQLLVSQPDTGEQALEIADMLVRSGAVDVIIIDSVAALTP
KAEIEGEMGDSHVGLQARLMSQALRKLTGSVKQANCLMIFINQIRMKIGV
MFGSPETTTGGNALKFYASVRLDIRRVGSVKEGEEVVGNETRVKVVKNKV
SPPFKQADFQIMYGRGIYRTGEIIDLGVKEGFVDKSGAWYSYKGDKIGQG
KANSSRYLEEHPEIAVEIETAIREKLMPKTPVKEKEAPVAPVEAE
>HCH_00223 recB, exodeoxyribonuclease V, beta subunit
MRPLDPIAIPLQGVQLIEASAGTGKTYTITTLYLRLLLERQLDVRQILVV
TFTRAATEELRTRIRQRIREVMQTLQAPPETDIAEWLQPWRDPERNGDAL
ALLQQALLNMDEASIFTIHGFCQRALQDNAFESGLLFDLRLQEDLGPLLQ
QAAEDTWRKLFYPDRLLAELAQAKWGEPADMLNGLRSYLAQGDLELIRPD
VDPQALSHLAGALKAQWRQQGDDLTAAVREAAENKILGRAEKTYREDKLN
DAILSLTIWSRTEEQMTLPPAAALFSQSVLDASVLKKAADKGLGAPQHAF
FTALDQFLTQQTQLDAWLVGATLTAFKDVLQRLKTQAEILGFDDLIGSLK
DALAAATGPQLRQALQRRYPVALIDEFQDTDPSQYRIFSSLYDAADGNAT
LFMIGDPKQAIYSFRGADIYAYLQAKQRTPQDNRYTMDTNWRSRKELVAA
VNGLFEQCANPFLFAGDIEFIPVQAAGAADASVLTLDDVPVTPLQAWLLG
REDGGKTISKDQARPQLAQITASEIANWLNLGECGRARLGERPLSAGDIA
VLVRDNKQARIMSEKLSAVGVSSVFLTRESVYQSEEATDLLRLLRALLEP
NDERRLRAALVTLSWGWTAAELETLARDEQRWENMLTSLHQLREEWQDAG
FMPMFQKWLQNFSVAARLLGLPEGERRLTNLLQLAELLQQAGRDYPTPER
LLAWYQGQLEQADGRGDEHQLRLESDEALVKIVTIHSSKGLEYPLVFLPF
LGFGRSGKDDYLMCHDPEREHRLVLDLSGGDRLREQAERERLAEDLRLLY
VALTRAKQLCVWAWGAVNEFQYAAMAWLLYGGATGSLTDWLTSLKNLDDT
QLAEPLTRLAAQTDFYWSPAPEPVHQRHQPGEGAGQWRARSAQRTVEQNW
RLSSYSQLAAGGGGRHSEEPLDEAEATLEVQPRLQPDVSDIFQFPKGAWA
GQCFHHILENMPFQAESAEILHELTSHSLQQHGFGEEWVACVAEQLWQVV
NTPLRQNGVTPFSLSQLDKANMQVEMEFLFPVTLIQQARLARFLADYSGS
EAPVNLNVAANEGLMHGFIDLTFQHEGRFYIADYKGSWLGEKRESYAPDN
LRNEILAHRYDLQYLIYTLALHRYLQRSLPAYDYETHFGGVYYLFLRGMH
SQQQPELGVFFDRPSREAVAAFAEILQGEPA
>HCH_00224 recC, exodeoxyribonuclease V, gamma subunit
MLKIYYSNRQEQLLALLADALARPKANPLQSDILIVQSQGMSRWLSQQLA
EINGVAANLEFQLPAQLIWRLARLCRDDLPELHPFDKSILTWRLMQLAPG
LPDSGEFDALHRYLHTGPDRKSPDLLRNYQLSQRIADVFDHYLMYRPDWL
SEWEQGLPTEAGASEHAWQIELWRGLTHDSDAPHRARVLQELAAQLPQHV
DKLPPRLFVFGVPYMAPAYLDVLQNAARHIEVHMYQWNPTEHYWGDIASR
KDISRIRTRDGAEVSGLYDEGHRLLASWGKPLRDYLDVLQDVSVTEADCY
VPPAPPQTLLQRLQADVFNLRQEPWPESPADDRSLQVHLCHSALREVEAL
YDQLMDLLQTDHSLSPRDIVVMTPDIEQYAPLVEAVFGAQQGARRIPWSL
ADLSRYSDFNLVQSVLQLFDLLPGRFTASEVLGLLEIPAVGRRFGLDEEL
LSRLRQWLHEASIRWGLDAESQQAYGVDCADQFSWKAGIKRLLLGFALPD
AMQMYQDVAPYPHIQGGDADSLGALSQLIDTLARWRAQISRGQTPQQWAD
LLHSWMNDLFDPDRDEEQALQVAREAVQEWLQETQTAGFDQPLPLAVVKQ
DLRRRLDSPLRRQSFLTGAVTFCAMVPMRSIPFRVVAVLGLNHDQFPRHQ
TQPGFDLIAEYPRKGDRARREEDRFLFLEALLAARDVFYLSYVGRSIRDN
SECAPSVILSELLDTIQEQGGEAAIRRILREHPLQPFSPHYFTADGGHFS
YQSEWLPALHGRHSKQEYQAFCPESLPPREREPFSTDHPVELDSLRRFLR
NPTRYFVQQRLNILLDASDLAQDREPFDLAGLHGFQVKELWLQELMNAAT
DEEAESYLEAKGLLPGGAVGAISRKQTRQQLEALREQARELYGKDRIEIT
PEKSGLPLRGAVAGIGPRGLLHLTTAGCSASRMLLLWLEHLALCGVTADA
LARPSFLVCRQGVGHYRPVAQNQARQLLAELMDLLTQSENEPVRFFPKTS
LKYVETKNNPRSRSEPINAALNCWLGNEWQPGELADAHHFLVWRFEAETL
NERFVALAESIWEPALEHWEAPA
>HCH_00222 recD, exodeoxyribonuclease V, alpha subunit
MSIAHLIDAARQSNLLRPLDYYLGQQFAELATAATEEQRELLALTVALTS
NALANGHTCLDLSQYAGRSLWPDSAEEDMRAFIAPSLKLWREALLASGLT
QADSDIGDAGPVSPCVLDDRNCFYLARYFEYERQLAGLLQQRIAHHAAFP
PEQVRQALLRFFPSVAAEDRQAIAAAVACRQGFTAIVGGPGTGKTTTVAK
LLGMLGELSEPPLRIALAAPTGKAAARLMESIRNAKLQLGERLSHPERIP
DTAYTLHRLLKVRGDGKGFVHHAGHPLPVDLLLIDEVSMVDLAMMLRIVE
ALPPHARLMLLGDSEQLASVEAGSVIGDICSQRATAGVSPDMASYLRKIG
LTPPYPEEEKAAPVADCVIRLEVSHRFHARSGIGRLAQAINAGDSEAALQ
VFRQPEFEDADWENLPPSQLQSIIQQTAANAYEPCFKADSVETALDAMNR
FRILCAVKEGHGGVQEINQWVEAALQRKGLAPRYQLHYHGRPVMVTRNDY
SLGLFNGDVGLIWRDPASGQLRAWFPDADGPLRSIPLYRLPAHETVYAMT
IHKSQGSEFDHCVVALPETDQPVLTRELLYTGVTRAKKRISVWGPRHLLI
KSIKRPTQRMSGLARRIWGELQPAGPAVDDKPDEPSGDGVQLDLW
>HCH_00007 recF, Recombinational DNA repair ATPase (RecF pathway)
MGLSRIAFTNLRNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGA
SFRTKELDYAVSHLSDEMVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRI
NGESARTLSELAAALPILIVTPDTFGFINGGPGERRRFVDWGVFHVEHQF
KVVWQNWRKLLLQRNKLLKSGNISRSELSAWDNQYVAYSDEISRYRDAYF
AELKEILIESLKESSEQTRDIGDKLTITLSNGWYQNDVNHMDQLASSVES
DVKKGFTTLGPHRADIKVKVGGVHAKEVLSRGQQKTLITHLYLSQLEILR
RRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDKQQSEYL
FGHFNQEYDTQMFHVEQGAVTKVHN
>HCH_06309 recG, ATP-dependent DNA helicase RecG
MSIEQPLTELKGVGPALAEKLAKLGLHTVQDLLFHLPLRYEDRTRVTPVA
QVRVGMPAQVEATVVDSRVELGRKRSLLVRVRDDSGEIGLRFYYFTAQQK
NRFSPGRKFLCYGEARLGRSGLEMYHPETTQVDELKPAEMEQRLTPIYPT
TEGLMQKRLRDLCQQALTLMRRYPIKDWLPQELRSHYQMPELNAALDYLH
HPPVGANVTALAESRHPNQQRLVAEELLAHHLSLLQLRQEVQSQPAPALR
AGVLQQRFIEQLPFALTGAQKRVIGEIEQDVRAMVPMLRLVQGDVGSGKT
VVAAASALCAIEAGHQAALMAPTEILSEQHYKTLSQWLEPLGVSVVWLNG
KLKASERQKVLDAISSGAAQLAIGTHALFQDQVEFARLGLAIIDEQHRFG
VHQRLSLREKGARSGQAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPP
GRTPVVTAVIPDIKRDDVVERVRKVCLEGRQAYWVCTLIEESEVLQCQAA
EATAANLAEALPDLRVGLVHGRMKAAEKTAVMDDFKHNRLHLLVATTVIE
VGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSHESYCVLMYHPPLSL
AGKARMQVMRDSNDGFVIAEKDLEIRGPGEVLGTRQTGLIQFRIADLQRD
RQWLPVVKEMALSVIDQPDVTEALIRRWIGHRALYGKV
>HCH_01781 recJ, single-stranded-DNA-specific exonuclease RecJ
MQRIYAARGVVSGDELEYSLSHLLQLDSLAGAQSAAVILAEALQRNQRII
FVGDFDADGATSTALGVLALRMFGAAYVDYIVPNRFEFGYGLSPEIVDVA
LSRKPDVLITVDNGIASIDGVKAAKRAGLQVIVTDHHLAGAELPEADAIV
NPNQPGCDFPSKSIAGVGVIFYVMLALRQTLRDKGWFAATGMIEPNLANL
LDLVALGTVADVVSLDANNRILVEQGLRRIRVKRCRPGINALLQVAGRNQ
EKLGASDLGFSIAPRLNAAGRLEDMTVGIELLLTEDPAKALMIAQELDGL
NQARKEIERDMQAQALSILDRMNWTYDNPPAAVCLYDESWHQGVVGILAS
RIKDRLHRPVIAFAPGDNGELKGSARSIPGLHIRDALDAVATRRSGLLSK
FGGHAMAAGLSLRPENFTAFSEAFQEVVAAAVSVDDLQAKLLTDGELSPE
ELCMNMAIALKNAGPWGQSFPEPLFDGQFRIASCRIVGERHLKMALADSR
SGNCYDAICFNIDPATPFSEWDRVKVVFRLDINEFRGHSNLQLLIEYLEP
CN
>HCH_01222 recN, DNA repair protein RecN
MLTHLSIRNLAIASHLELDFAEGMTAISGETGAGKSIVLDALGLTLGDRS
SADIVRHGCERAEVSAVFDLRRLPEALAWLKSRELDNGAECILRRTVTHE
GRSRGYLNGQPVTMQDLRELGETLMDIHSQHEHQSLLKKETHLKMVDDFG
GHANQLQQVREHFQSWRRVAAKLKEKLSHSEEQEARVQLLTYQVEELDAL
ALQEGEIEQLEQEQEQLANAESIIMTVQQVGEGCLEADGGCIDQLRRAIH
LLEEVNLNNASLQTARQMLNEAMIQLDEANGELRHVLDSVEINPERLQEV
EARLTAIYDLARKHRVGPEELMTRHAELASELSSLTDGEENLEKLEAQSK
ELEQKYSQAAQKLTSMRAKAGEKLQGAVKKQLVKLGLNPEFIIQFSSLKS
PSVLGDEEAEMLISMNPGQPPKPLQKIASGGELSRISLAIQVVAAASSDT
PTLVFDEVDVGIGGATAEIVGRMLRELGAKAQILCVTHLAQVASQAHNHL
FVTKHVSNGQTQSAILKLEGSDRIHEIARMLGGVDITEHSLAHAHEMLTS
SQLQ
>HCH_01803 recO, DNA repair protein RecO
MHRVSLQAAYVLHSRPYRESSYIVDLITEADGKASAVLKGGGRRKGVPGT
LQPFTELEVELGGRGELKSLIRYETTNIRYPLAGAALYAGLYLNELLVKL
LQPLEGCRKVFDAYKSSLTFLSLPQPNLEPGIRELEFALLNELGFGVDFC
VESATGDIVKNNIAYYFSLTEGVSRTPEPCSVVIEGHHLIAIAGRDWSVP
GSLSAAKRLTRRCLDELLGGRPLHSRELMRSYLKLTKG
>HCH_00158 recQ, ATP-dependent DNA helicase RecQ
MNRISSSLQSPLQALQTLFGYDAFRGPQEAVIGELMAGRDALVLMPTGGG
KSLCYQIPAILRDGVGVVISPLIALMQDQVDALRQVGVNAGFLNSSLSLA
ELRDMERALLDQELDMLYIAPERLTQERTLELLQRTPISLFAIDEAHCVS
QWGHDFRADYLQLNLLQERFPHVPRVALTATADERTRKEIAERLGLTEAQ
HFISGFDRPNIQYRITQKQNARQQLLRFLRAEHANDAGIVYCLSRNKVEQ
VAEWLRKEGFNALPYHAGLPADVRQEHQQRFLREDGVIVVATIAFGMGID
KPDVRFVAHLDLPKSIESYYQETGRAGRDGLPSTAWMAYGLQDVIKLRQM
MEGSPGAEQFKRAERQKLDAMLGLCEIVSCRRRALLRYFGETAPEQCGNC
DACLNPAETWDATVAAQKVLSCIYRTGQRFGVNHLIDVVRGELTDKVKQF
GHERLPTFGVGEDLDVAQWRSVLRQLTARGLLNVDLDGFGALKLTEACRP
ILRGEQEVRLRRDVKEVMTKAPKRSGESLREEDLPLWDALRIRRKELAEE
QGVAPYMIFHDATLMEILRHRPQNDMEFLALNGVGKSKLERYGEDFMEIV
RNA
>HCH_02615 recR, recombination protein RecR
MSSSLTPAIDQLVRCLRYLPGVGAKTATRMALNLLERDQGRAADLAIAIS
DALTRVKRCSRCQNFCEAELCSICESPKRDDRVLCVVESPTDVLAIEQTS
DYSGRYFVLMGHLSPIDGIGPEDIGVDKLKQLLQESAVSELILATNPTVE
GEATAHFIAHIAKDLNIPVSRIAHGIPLGGELGMIDSGTLSHALQGRKPF
A
>HCH_06427 rep, ATP-dependent DNA helicase Rep
MSQLNPRQREAVKYIDGPLLVLAGAGSGKTSVITRKIAYLIEECGLKAKH
IAAVTFTNKAAREMKERVSALVSGPAARGLTVSTFHNLGMNIIRLEHKAV
GLKPGFSIFDQQDCKAIIKDLLFKEFDEAEEDVDQLQAHFSNWKNDMLTP
AQAIKQAITAEDLTAARLYERYDHYLRAYNAVDFDDLILMPVMLFRNHPE
ILAAWRLRIRYLLVDEYQDTNLSQYELVQQLVAGRQAFTVVGDDDQSIYA
WRGARPENLVRLQKDFPTLKLVKLEQNYRSTARILKAANTLIANNPHVYE
KALWSQLGMGDEIRIIRVRNEEAEAERIASEIIDTRLKKRAQYKDFSVLY
RGNHQSRLLELKLQAYQIPYRISGGTSFFSRNEIKDAMSYLRLLANPDDD
AAFLRVVNVPRREIGPVTLEKLSSYAESRKISLFSAISEFGLESVLTGKT
LDHLREFSEIILHTGQKCEEEHDAVPVLKQLFTRIDYEEWLLQNSTSPQQ
AERRMANVWILLDQVARMLEYDAAADEQMTLKDAIGKLLLRDIMDQQKEE
EDEDKVHLLTLHASKGLEFPHVFIMGLEEDILPHRNSIETNQIEEERRLM
YVGITRAQRSLCLTFCSERKQFGEKIETIPSRFLDEMPQEDLVWEGLGQR
NEERNQARGRATLDALLRDLGD
>HCH_02291 rhlB, ATP-dependent RNA helicase
MTVSDQTTDNAVLFSSLNLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGA
DLIGQAQTGTGKTAAFLITILQRLVSNPILTEERFSSEPRALVVAPTREL
ALQIEKDACALAKHLKLNIISVIGGTQLDRQRRKLRDEAVDLLIATPGRL
LDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPRERQTLLF
SATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVYMVESSAKRKLL
VNLLKDSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLK
TLERFRRGDFRVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRT
GRAGATGVSISFACEDDSFLIPELEKYLGHELALIHPDDDLLQ
>HCH_02527 rnhA, Ribonuclease HI
MKTVEIYTDGACKKNPGPGGWGAILIYGKNEKEIYGGELDTTNNRMELMA
AIEALRALKQGCKVELYTDSQYVRKGITEWMQNWIKKGWRTSGGDPVKNV
DLWQALDKERNKHDISWRWVKGHSGHPLNERADELANLGVKEALGETG
>HCH_04993 rnt, ribonuclease T
MSESQNRPKSPLARRFRGFLPVVVDVETAGFNSKTDALLEVSAVIISMED
DGMLYPEPPVSFNVEPFAGANIEQAALEFTGIDPFNPLRDAKPEADALNE
LFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAAERGDVKRNPFHPFST
FDTATLAALAYGHTVLSRACQLAGIPFDNKEAHSAEYDAMKTAELFCSIV
NRWKELGGWTTDQQDYAD
>HCH_04923 ruvA, Holliday junction DNA helicase RuvA
MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTH
FVVREDAQLLYGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVE
CVRGDNLTRLTKMPGVGKKTAERLLIEMRDRIKDWGAGDRETATPELLSQ
AVGGHSHLEEAEAALLALGYKPQEASRAINAVNKDGMGRDELIRLALKGM
VKTK
>HCH_04922 ruvB, Holliday junction DNA helicase RuvB
MIEADRIISPNATLQEDSQDRAIRPKRLEDYVGQPQVREQMEIFINAARG
RQEALDHTLIFGPPGLGKTTLANIIANEMDVSIKTTSGPVLEKAGDLAAL
LTNLEPKDVLFIDEIHRLSAAVEEVLYPAMEDYQLDIMIGEGPAARSIKL
DLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSVEDLRHIVARSASLL
GVSIDDGGAHEIARRSRGTPRIANRLLRRVRDYAEVKADGAITNEVADKA
LNMLNVDLHGFDHMDRRLLLAVMEKFDGGPVGVESLAAAIGEEKGTIEDV
VEPYLIQQGFLMRTPRGRVATQAAYNHFGLTMPE
>HCH_04924 ruvC, crossover junction endodeoxyribonuclease RuvC
MLKVLGIDPGSRFTGYGVVEWGGGKPRYVASGCIRVTGETLAERLRCIYL
GVTQVVSMYAPDEAAIEQVFMARNADSALKLGQARGVAILAMAEQGLQVA
EYSAKKVKQSVVGKGNAEKWQVQHMMQAMLDLQAKPQADAADALAIAVCH
LHTQQSLMRIGSVSSSRRGRMR
>HCH_00898 sbcC, ATPase involved in DNA repair
MRILSLRLKNLNSLKGEWKVDFRADPFHSNGLFAITGPTGAGKTTLLDAI
CLALYHQTPRINVSPTNNEIMTRHTAECLAEVEFEVKGEAYRAFWSQRRA
RNLAEGRFQPPHVELATADGKILADKVKDKLTLIAELTGLDFARFTKSML
LAQGGFAAFLNAPANERAELLEELTGTEIYGKISARVFERQRDAKGELER
LRAKAEGQDLLSDDELTAYYEESTALETQEKTEAERLESLRTQKQWLDRV
TQAQQSFKEAELRLTEATARLEQEKTDLGRLALSEPAEKLRPFYKDYQQA
HDAYAQTERHIKSLTESLELARVELERKSSELALAKKALMQLQTQREELE
SLVAEKVMPLDQAIEQLNSLMGQQQETVAEVVRRRDESSEQEKALSVQLK
ALREEIQAANEYLESRRSHKLLPESLPLWRERLAQRTKARGELTKLAEAI
KAREAEQRKQEVESGRLQEAQTEALKVLEEHRRVVADTQKAILGVLSGET
DAELRECLASMQKSRTDRFRLGRLADDYGKRRQELAELKAQLQEREGELA
QGKQSLLMMRKQYKAEKAHLDDLDRLMQKERQIASLSEHRSRLSPGEPCP
LCGSHEHPGIAAYEAQQESDTEKRLQEKRKQLQELEEKGKKLNEAAARLS
SELEIGAGARGKLEREMTALQAEWTQLCGEFGVNLVIDAPAGAQNAVDVY
LQKEEAKENALAERVRSLEQTEKQLQQAKESATAAEQELGEILRKLELQQ
RDLQNLSKEINAQLTQQAEQSAALSALEQGVSEAFATLGYAMPRDEEQDA
WLETRNAEAREYQARQEKLEQGVKQAGDLERQLEHAAEKATEIAQTLKGL
QENLTQTQAALAEKKAQRQALFGDKSPTEERKRMQEQLAAAEKRWTTLQE
DKERADTALQQHLGREELLKTQLGSQRALLSDAERLWSEALAASRFADQT
AFEQALLNEEERQALAVLKQELDQQKDRAATLKQRAEAELNELLATPATQ
LSEPELAEQLQTVADGLKAVSQKQGEIRQLLQSDQTRRMSRQKLLVDIES
QQQRYDDWAYLSSLIGAADGAKFRRYAQGLTLDHLVYLANQHLSRLHGRY
ELERREGEALELQVVDTWQADTVRDTKTLSGGESFLVSLALALALSDLVS
HKTSIDSLFLDEGFGALDSETLEVALDALDCLNASGKMIGVISHVEAMKE
RISVQIKVKKMSGLGVSRLDNRYCLESAM
>HCH_00897 sbcD, DNA repair exonuclease
MTFRILHTSDWHLGQHFFGKTRADEHAMFFNWLLEQVQVHEVDALIVAGD
IFDTGAPPSYARELYNRFVVELQRTDCQLVLLAGNHDSVATLNESKDLLA
CLNVHVVAGMPGTPENNVLLLNDRNEEPGAILCAVPFLRQRDLTTSKAGQ
DGAEKQQALQQAIADYYARLFQLAQARREEFGEALPIIATGHLTTVGAEL
TESVRDIYIGALDAFPSGAFPPVDYIALGHIHRSQKVGGQEHIRYSGSPI
PLSFDEAEQSKSVLMVDFEDGRLQQVTPLETPCFQPMQVIRGDLKSIEKQ
LGSIVAPNSQLSLFSNADKVWVDIEVAATQDYLDDLQRRIQDMVGALPVE
VLLVRRERKNKGLRLERLEKETLAELTVEEVFERRLAQEVWEGEEAEARR
QRLLGMFRQVENDVLGDGLEADAEAEPHVETSVTGGDV
>HCH_02047 tag, 3-methyladenine DNA glycosylase
MASEQRCSWCGNDPQYVSYHDQVWGRPVKDSQELFAKLCLDGQQAGLSWI
TILRKQKNYEEAFADFDPEAIVRFTEEDVERLLQNPGIVRNRLKVQSIIK
NARGYLALRDQGIEFSHFLWDFVGGKPIVNHLQSMQQAPTSTEVSDAMSK
ALKKAGFTFVGTTIVYAFMQAVGMVNDHMTFCPQHRECAELAEKFHL
>HCH_02416 tatD, Mg-dependent DNase
MLIDSHCHLDRIDLSQADGDLTVALNQARARGVSGFLCVDIDLDNFNDVY
RIAQVYDDVWCSAGVHPLAKMNAADLSPDHLTQLAMSGDKVVAVGECGLD
YYYDQDSKANQQEMFEKQLSVACDLGKPVIVHTREAREDTLHLLRKYSAK
GLQGVLHCFTESWDMAKAALDLDFYISFSGIITFRNAEELREVVKKTPIE
RLLVETDSPYLAPVPYRGKSNQPQWVVEVAQCVADLKGLSLDKTAQATTD
NFHRLFKTHQNEERR
>HCH_04752 topA, DNA topoisomerase I
MTAISTRSKEPSAMGKSLVIVESPAKAKTINKYLGSEYVVKSSVGHIRDL
PTSGGKETSSPKERAAEAAKMRKLPAEERESIKKRKARDQLISRMGVDPE
NDWAARYEVLPGKEKVVEELRRLAKSADQIYLATDLDREGEAIAWHLKES
IGGDDSRYRRVVFNEITKSAITEAFKSPGQLDYNRVNAQQARRFLDRVVG
YMVSPLLWSKIARGLSAGRVQSVAVRLIVEREREIRAFTPEEYWELHALL
SKSKQQAKFQVAKYKGENYRPTNKAQSDKLTALLQTQAFKVVNREDKPSV
TKAPAPFITSTLQQAASTRLGFSVKKTMVLAQRLYEAGYITYMRTDSTNL
SADAVNACREFIGKKFGDKYLPDNPKTYVSKERAQEAHEAIRPSDINVGA
NQISGLEKDAEKLYDLIWRQFVACQMENARFLSTSIQVQAGDFELRTRGR
LLQFDGFLKVLPAQAKKDDEAELPAFEVNDQLDLDKLEPTQHFTKPAPRY
TEATLVKELEKRSIGRPSTYASIISTIQERGYVKLANRRFYAEKMGDIVT
DRLTEAFTDLMDYGFTAKMEGQLDEIASGNEGWKQVLNAFYSDFAKKLEK
ADMEGGMRANQAVQTEIACPTCSRPMQIRTASTGVFLGCSGYALPPKERC
KTTINLIPGDEVIRADDEEGEANALRAKKRCPICDTAMDSYVIDETRKLH
VCGNNPDCEGYEVEGGQFKVAGYDGPTLECDKCGAEMQLKTGRFGKYFGC
TSSTCGNTRKLLKNGEPAPPKMEPVVMPELACDKVDDIFVLRDGASGLFL
AASKFPKNRETRAPLVEELIPHKKEIDPKHHYLLEAPTRDPEGNPAIIRF
SRKTKQQYVMSEKGGKPTGWSAFYKDGKWVAKDK
>HCH_01784 ung, uracil-DNA glycosylase
MQSCAEVLFGALAPDTRWKDALKEEFSKPYMVQLEQFLGAQDGQGKVIYP
SLDNCFNALNSTPFENVSVVILGQDPYHGPGQAHGLSFSVLPGIAPPPSL
VNIFKEINNELGLGVPEHGCLAYWAQQGVLLLNSVLTVEQSKAASHQGKG
WEQFTDRVIQLINSERENVVFLLWGSYAQRKGAFIDRQRHCVLESVHPSP
LSAHRGFMGCGHFASANDYLRAHQKKPIDWRLPPKDRLDEKGQLIKKTPA
SVE
>HCH_06191 uvrA, excinuclease ABC, A subunit
MDTIQVRGARTHNLKNVDLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSTYARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIYDYLRLLYARAGEPRCPDHDIVLEAQTVSQMVDRILELPQDSKWML
LAPVIRNRKGEHLHVIEGLRAQGFIRARIDGIVTDLDDIPQLDKKRKHTI
EVVVDRLKIREDIQTRLAESLETCIELAEGVVIAAPMDGDGEELIFSALF
ACPECGYSVSELEPRVFSFNNPAGACPSCDGLGVKQYFDPDKLVERPELT
LAEGAIKGWDRRSVFYFQMLTSLAEHYDVDIETPFEALPESFRNALLKGS
GRTDIKFKYVNSRGDIVFREHPFEGILPNIERRYRETDSQMVRDELSKFL
TQKSCPDCHGSRLKRSSRHVFIDNKSLPDTSHMAIGDASNFFHHLSLPGR
KGEIAAKIVKEIQLRLQFLVNVGLDYLTLDRSAETLSGGEAQRIRLASQI
GAGLVGVMYVLDEPSIGLHQRDNDRLLATLTHLRDLGNTVIVVEHDEDAI
RMADYVVDIGPGAGVHGGEIVAHGSPEQVMASDKSITGQYLKGTRCIAIP
EQRVQPDPDKQLIISGATGNNLQSVTLKVPVGLFTCITGVSGSGKSTLIN
STLYPIAATKLNMATTLTAEPYESIEGLDHFDKVIDIDQSPIGRTPRSNP
ATYTGIFTPIRELFAATQEARSRGYKPGRFSFNVRGGRCEACQGDGVIKV
EMHFLPDLYVPCDVCKGKRYNRETLEVTYKGKSIHDVLEMTVEDAREFFD
AIPAIAKKLQTLIDVGLSYIGLGQSAVTLSGGEAQRVKLSRELSKRDTGK
TLYILDEPTTGLHFFDIDQLLKVLHRLRDHGNTIVVIEHNLDVIKTADWI
IDLGPEGGSRGGLIIAEGAPETVKDNEKSHTAHFLKRILES
>HCH_04971 uvrB, excinuclease ABC, B subunit
MQKFQLKANYQPAGDQPGAIAGLVDGLRDGLLHQTLLGVTGSGKTFTMAN
VIAEMQRPAMVMAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAY
VPSSDTYIEKDSSINDHIEQMRLSATKALMERKDVVIVATVSAIYGLGDP
QSYKKMMLHLDRGDKVDQRSLLRRLAELQYTRNDLELHRANYRVRGDVID
VFPAESESDALRIELFDDEIESLSWFDPLTGEVYRRVPRATIYPKTHYAT
PRQVILDATEQIKTELQERLQQFRGSSKLLEAQRLEERTRYDLEMMYELG
YCNGIENYSRYLSGRQAGEPPPTLFDYLPSDALLFIDESHVTIPQIGAMY
RGDRSRKETLVSYGFRLPSALDNRPLRFDEWERLAPQMIFVSATPGNYEA
DHQGQVVEQVVRPTGLVDPDIEVLPASTQVDDLLGQIHDRVERNERVLVT
TLTKRMAEDLTDFLLDKGVRVRYLHSDVETVERVEIIRDLRLGEFDVLVG
INLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNVRGKAIL
YADKITGSMQRAMDETERRRNKQISYNEEHGVIPRGLDKKVADIMEGARV
PGSKKGASQRRVAETASSYNVEAEARTPQEYAKMLQKLETAMYEAARNLE
FEKAAQLRDQLKELKEKGLQ
>HCH_04042 uvrC, excinuclease ABC, C subunit
MESQSIFDAKSFLKQLTTRPGVYRMMDARGEVLYVGKARNLKNRVSSYFR
NTGVSIKTRALVEKIADIEITITHSETEALLLEQNLIKTLKPPYNILLRD
DKSYPYIYLSSHDEYPSLTFRRVRQKKTGKGRFFGPYTSAAAVRESLALL
QKIFRIRQCEDSFFSNRSRPCLQHQIGRCSAPCVGLIDPQSYAEDMSHAT
MFLEGRNPEIINETIQQMEVASAQLDFERAAVLRDQVDYLRRVQEQQAIE
GVARDIDAFALSSSLELVVVHGLFIRAGRVVGSKSFYLSERLESDDGDLL
SSFLNQYYFGEHAIYGLPQEITTTVGLTDKDALKAAFKEVFNRNVRIEHN
VRSNRAEWLHLAQTNANQALSTRMQSQDAQLQRWQSFCDALNLEASVKRV
ECFDVSHTFGEATVASCVVFGPEGAIKDLYRRYNIKDVPAGDDYHAMEQA
LTRRYSKLKDSDVGLPDIILIDGGKGQLGIAHQVFDELQITGVTLIGVAK
GVTRKPGMETLFISADNSILNLPGDSTALHLIQQIRDEAHRFAITGHRNQ
RNKKRTQSVLDAVPGIGPKRRRDLLNYFGSVRNIERASLEEIKRVPGISE
VIAQTIYAAFHE
>HCH_02006 uvrD, UvrD/REP helicase family protein
MKDILSYLNEEQFKAVNATTGATLVLAGAGSGKTRVVTYKAAHLILNEKA
LPKSIILVTFTNKAANEMRSRLGELIGPIAKTIHIGTFHKLFLDLILKPS
ADRPVTQRYGYNQTTRVISEHEARGFIESFWSNLGEEQQRFVARNGISLN
EVLACLSRARANGFGSIDYAPPMELSNRERMIDRIMIALWRNLDEEKRKL
NAIDADDILYIARHVLKEDAELRDALQYHLKHFIIDEFQDCNYLQFEAIR
LLAANAVSITVVGDAKQSIYQFRGSEPTVFQAFLEAYESPSVRVLDTNYR
SLNKLVQLSNKLADSMPHRLQDDIAMRAHKSGDGVVQFASPLNVMTESNE
VAANIQTLLDAGTSPDEIAVLYRENSQRLHIEQALIARRIPYLVNEGVPL
MRRRGPRMLLSLCLAPSSSESPLEEKYLEYILNHSRINIQWRHKKSGKYK
DEAIFKYLQFISDADGSLGEKATDIIRDIRLIKKLNHCPPSQVEEQLWEI
LLRHTYFSREGMESLPAKVVIQQLLDGLKKGVALEQSAEELLAINSEKTE
SDKIHLMTIHASKGTEFDTVFLINATLSDHKERDDNREEERRVFYVALTR
AKNRLHISCPQYNERGLPLQPSPYIAELRRV
>HCH_00300 xerC, tyrosine recombinase XerC
MSLSTQVEAFIAYLHSERRYSVHTVSSYNRDLRRVVAYCDANGVASWKDL
HTPQLRQALSEFHRRGLGSRSLHRLLSTVRRFYEYLLRERLVYENPANGV
RAPKMTKRLPATMDVDQAKQLLDSPVEEEELEIRDQAIAELFYTSGIRLS
ELAGLDLAHLDLSEGLARVLGKGGKERLVPVGGQARKALRDWLQARASLA
VAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSGRLYPHLFRHSCASH
LLESSGDLRAVQELLGHADISTTQIYTHLNFQHLAEVYDKAHPRARKRKK
D
>HCH_01776 xerD, tyrosine recombinase XerD
MLWLEQGLSENTRMSYRCDLLRLAEWLMGRGRTLVDASREDLFSFLAVRM
QKGAKGASSARMLSTLRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAI
SEMEVEQLLAEPDASQPIEARDKVMLEVLYASGLRVSELVSLRLYQVNLR
QGVLRVVGKGGKERLTPLGEQAVEQLEAYIKGVRPQLLAGREDGVLFPSM
RGSEMTRQTFWHRIKLYASRSGISKNITPHTLRHAFATHLLNHGADLRVV
QLLLGHSDLSTTQIYTHVAKARLQQLHSRHHPRS
>HCH_04944 xseA, exodeoxyribonuclease VII, large subunit
MSELSPHSPFSVTELNRQVRRLLEVSFMQVWVTGEISNFSCPSSGHWYFS
LKDDKAQVRCAMFRNRNMFVKQRPRDGEAVTLRAKVSLYEGRGEFQLIAE
SMELAGEGELRRAFEELKLKLSREGLFEESRKRPLPAMPKQVGVITSPTG
AAVRDILTVLERRFPAIPVLLFPVPVQGKEAGPAIVAAIASANRLNCCDV
LIVGRGGGSLEDLWAFNEEPVARAIAASAIPVVSAVGHETDITIADLVAD
LRAPTPSAAAEKVSPDQAEWKHRFLIYEQRLDAAAQRLLRQEGLRLNQLR
GRLKHPGRRLQESAQRLDDLEVRLHRQAQNLLSVRRNQLTHLRDRLLASS
PRQSLKNRYATVDALNHRLQTAVLSVLRHKSQHFAKLCGHMEAVSPIATL
ARGYAIVSDENGQIIRSEKEVRTGQKVKARLSDGEIHCEVVASV
>HCH_05864 xseB, exodeoxyribonuclease VII, small subunit
MTEKNANSDVSQSASGSTPDFEDALQRLETLVRKLEQGDLKLEEALVAFE
EGVQLTRHCQTALQTAEQKVQQLIEERGTPLTKPFDQNDAED
>HCH_02757 xth, exodeoxyribonuclease III
MRIVSFNVNGVRSRLHQLKELISQYQPDIIGLQETKVIDELFPLEAINEM
GYQAEYYGQKGHYGVALLSKQPALRCFKGFEGDGEEAHKRWIVGEYAVGG
QTLVVCNGYFPQGENRSHPDKFPNKQRFYAGTLDFLQQRSPDQPIVVMGD
MNVSHTDSDIGIGEENRKRWLRTGKCSFLPEEREWLNRLLDWGLVDTFRQ
HFPDVKDRYSWFDYRSRGFEDNPKRGLRIDLILATQPLAARCVDAGVSYE
IRSMEKASDHCPIWADFDLG
>HCH_05108 yscO, putative type III secretion protein YscO
MLSALADIKKLRERNAQAEALRKRQLLTQSREKVEEAQRDLQQFEIWRVQ
EEHRLYDSIMGSEVGLKAIDKVKHQIGMLRLKEVSLAEQVEKARQEQKQA
EAALRQAEQALAEAGKAVEKCQMLIEQVSADAIAEAQRLEELELEEASET
NFSRPQN