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# Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808

>RSP_2052 N6 adenine-specific DNA methyltransferase, D12 class
MKQVPPAAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRR
RFRPRLEVMNDRNGEIINLFRILQRHYPQLLEIMRFQICSRREFDRLRVT
DPATLTDLERAARFLYLQRLSFGGKLDGVFGVSAGHGPRFSLARLEPVLD
AAHERLDGVVFESLDWADLIPRYDTAETLFYLDPPYFGGENDYGRGIFDR
AQFARIAEILGSLKGAFLLSINDTSEIRALFGRFHLEPVRLNYSVSAAGG
TEAQELLVSNRERIATLL
>RSP_2013 DEAD/DEAH box helicase
MTETLPIDAALPGLIAALRAQRMAVLQAPPGAGKTTRVPLAILKAGLTEG
RIVMLEPRRLAARAAAERMAATLGEPVGRTVGYRIRGEARVSRETRIEVV
TEGILTRTLQDDPELTGIGALLFDEFHERSLNADLGLALALEVRSALRED
LLLLVMSATLDAGPVAGLMGGAPVVTSEGRAFPVETRWLPRPLPAGARLE
PEVAALVRQAVAETAGDLLVFLPGEGEIRRVEGLLGGLGCEVAPLFGALD
LAAQRRALEEGPGRRIVLATSIAETSLTIPGVRVVVDAGRARRARFDPSS
GMSRLVTERVTRAEADQRRGRAGRVAEGICYRMWTRGEEGALAAFPPAEI
EAADLTALALELAVWGSADLPFLTPPHPGVLAEARGLLEGLGALEEGRVT
AHGQALARLPLHPRLGHMLTVAGPSAAPLAALMSDRDPVRGPPDLALRLA
ALADPKRFSDEHPHEVNRAALARIREEARRLARAVTTPEAGLSVGQMAAL
AYPDRVGLRRKGEAPRWVLSGGKGAAMEPGQPLAGVRLIVATDLDGDARE
AKVRQAAPIPESDLRALFAPQIRWREVCHWSRREGRVVARRQECFGALVL
DDRTWPEVPPEALALAAVEGLRQIGLPWSASARRLRARVELLRAEGAPMP
DMSDAALLEDPGWLLPFLGGRRTEAELRALDLTEALRARLGWEGMQLLDR
LAPPQFETPLGRRVPIDYEGEAPGIEIRLQELFGVTEHPTVGPKRLPLRI
TLLSPGQRPVQVTMDLPGFWASSYADVRRDMRGRYPRHPWPEDPTVAEPT
LRAKPRGT
>RSP_0604 conserved hypothetical protein
MMWFPPDGTRPELAAYLACAQARAEEAVSAAGLAGSAVKQGRLFDFALRP
LQAACAEILLPSGPTLAVIEDETGAGKTEAALLLAHRMIAAGKGRGLYFA
LPTMATSDAMFSRAEQVIGRMLTAPSLTLAHGRAGLSEGFRDLVVGKPRA
EDAASCTQWLAESRRRALLADVGVGTIDQALLSVLPVRHQTLRHFGLSSK
ILIEDEVHEMGEPYIGRELERLLQTHRAAGGSAILPTATLPMALRGRLLA
TYGGDNPGPAYPALTLAGGEARVEFPPDRRPVKGAVRVTRVQQAEDAADL
LAEAVRRGAACVWVRNSVDDAIEAVAALRARSVAAQLLHARFALADRKRI
EAEVLARVGRDGERDNRVADIKKAWAGAVVKAAELAAKAGREIDLSDTTP
HVLRHTAITWAMQRGADMWEAGGFFGVSRETMEEVYAHHHPDHQASAVEA
MERRRK
>RSP_1468 Site-specific DNA-methyltransferase
MATKTKTTEAPVLPLNQILAGDCIETMRSLPECSVDLIFADPPYNLQLRG
DLHRPDNSRVDAVDDHWDQFSSFSVYDQFTREWLAAARRLLKPNGAIWVI
GSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNFKGKRLTNAHETLIWA
SKQEASKYTFNYEALKALNEGVQMRSDWVIPICTGHERLKDEQGDKAHPT
QKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREES
YRRIAAERLSRVRRYDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELY
SMNNRHKAKVRADGTLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREG
KMIPIDILRQQIRAEMEDPRPN
>RSP_1458 Putative DNA repair enzyme
MARRRILSLWFPRLGAERLLRRRKDTLPPPFAVVGDRQGAQVLVSVSAEA
ETLGLGPGQGLRDATAICPHLMTASEDPASEAAFLAALRRWAGKFSPWVA
EEPPAGLMIDLTGCAHLFGGEEKVLGVVEADCAGLGLTVRAAVADTPGAA
WALARHAGRALQGNLNGDAIEQEAHATRSRASRRRTFAPPSGGPLGLISA
PGALRAALEPLPVAALRLSEGTVQSLARLGLRRVGDLLDLPRASLARRFG
QEVTRRIDQALGLEPEPVSPAGAPLHFAVRLTLPDPIGLREDVEAGLDRL
LGPLCDRLKEKGRGARRVRLQAFRSDGQVPAVEVGLAHTTCAPERIRPLL
ALKIDQIDAGFGIDMLRLSAVETELLTVASGKGRGPAGRPAEVLADVVGR
LGARLGAEGVTRLHPAESHVPAKTALVLAAAWSEAAGPWPEPPGRRPLIL
FPPEPVEVVGAPPHRVCWRRRDRRIVRAEGPERILPEWWLEEPDWRSGAR
DYWAVELEEGERIWLFEAMGGVVSGGWWVEGEMA
>RSP_2684 putative endonuclease involved in recombination
MIHDRIEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRT
KFTEDAAKLKAIAAERRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLVQV
LPLPVGFWDERLSTVAAERALLEADTSRKRRAEVIDHVAAGYILQGVLDR
LDWLGREGGA
>RSP_0708 NUDIX hydrolase
MRIAETVTFGGSGLDRAGRLRGDAASLARLLAGDCVLPIWRGRPLCAEEG
ALGWLPPGHPVLAGAEEPIFLGLDGEAPRFAADISHWSPEAGAEAVQGGF
FDPGFQSHPALPGAPGFGDLRGLMLALSPREAELAATAKALVQWHRSHRF
CSTCGAPSAPSEGGWHRRCTACGAQHFPRTDPVVIMLVTHGNRALVGRSP
GWPEGVYSCLAGFVEPGETIEAAVRREVMEEAGVTVGPVRYLASQPWPFP
ASLMMGCHGIALTDVITLDPVELEDARWITREEMVTVMAGRHPEVRPARK
GAIAHFLISNWLADRLD
>RSP_2177 hypothetical protein
MRAKAQKPISSPAEAEWLDRLRLIRSRRVGPATWRRLMAEHGTAAGALAA
LPGVAAAAGIEGYEVCPLPVALKEMAAARAAGAAMLWLDEPGYPPLLGQI
GDAPPLLWLQGDPGLLARPMVALVGARNASSLGLRMARKLAAALGEAGYV
VVSGLARGIDAEAHAAALGQGTVAVQAGGVDVIYPAENAGLAAEIAARGC
RISEQPMGLVPQARHFPLRNRIVSGLARAVVVVEAAARSGSLITAREALD
QGREVLAVPGHPFDPRAAGGNQLIREGATLVRHAADVIEAIGTAHPAARS
PEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQE
LVALELEGRIQRDPGGLVSRPE
>RSP_2232 putative uracil-DNA glycosylase
MAAWRAEARRLAQAGVPAESVVWRVGAGEADLFADLPALPAGPARQIRLS
REAVGSLETALCHADPERFGRAYGLLLRLADGTLRWGDRSDPALRKLLAQ
EKMVRREIHKMHAFVRFRELPSEGPRRAFAAWFEPDHPVEEAATPFFARR
FGDMDWAIVTPEVTARFVAGQLDFALTEERTAPPADGTEELWRTYYANIF
NPARLMVKAMQSEMPKRYWKNLPEAELIPGLIRGAAERAAEMQAAAPTEP
PARTAAVARQRAAAAGGPAAAGDGSAPGTLAEAKTAAEGCRRCGLWANAT
QVVFGEGPATARMMIVGEQPGDREDLAGRPFVGPAGQLFDEEAAAAGLDR
GSVYVTNAVKHFKFAPRGKRRIHQKPDAGEVTACRWWLDLERDLVRPRLI
VAMGATALASLTGSGAGILKRRGSVERLDDGTPVFVTVHPSYILRLPDEA
ARVEERRRFRDDLQAARQLLERLD
>RSP_1743 ATPase, AAA family
MSDLFDREPAPPQPDAPRPLADRLRPKSLAEVIGQGKVLSPDGPLGAMLV
SGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTGVPDLRKVFE
AAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPS
FELNAALMSRAQVIVLDRLSLADLERLAQRAEHETGRALPLDGPAREALL
EMADGDGRALLNLVEQVMAWKVKGPLDRDQLATRLMRRAAKYDKSGEEHY
NLISALHKSVRGSDPDAALYWFARMLEGGEDPRFLARRITRMAVEDIGLA
DPQAQGICLEAWATYERLGSPEGELALAEALVYLALSPKSNAVYTAYKAA
RAAAKQTGSEPPPKHILNAPTKMMKEIGYGSGYQYDHDAEDGFSGQNYFP
ESMKRPVWYLPQERGFERELKKRTDYFSKLRAKRQGG
>RSP_1696 DNA topoisomerase IV, A subunit
MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPV
HRRILFAMRELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQ
DFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAELLMEGLAENAVD
FRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIEGC
LALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLR
AKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD
ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPR
VCSLKEVLRAFLDHRRNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRV
IDIIRYDADPKRALMAESWGRRFKRANSEKDYVGPGPGPGDLSEVQAEAI
LNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDLGE
IRKLFGKWTVAGARRTQFAEAGEVEEVPLEAMIEREPITVICSQMGWIRA
MKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPG
GRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVL
AQTRAGKAVLSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMA
KGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRTRTETELAEWTAARA
GAGKMAPRGFPRDNRFT
>RSP_2865 putative transposase
MGWVLMSERELNRIEILSKVLDRRMTTTEASVLLAIGPRQVQRLLRRLRE
DGAAATRHGLRGRPSNHRLSPGLRDLALALVRETYVDFGPTLAAEKLAER
DGLHVSRETLRKWMVEDGLWLSRPQRRRFHQPRLRREHLGELVQIDGSDH
HWFEDRAPACTLLVLFIDDATSRLMEMRFVPSESTFAYFAALECYLTRHG
RPTAFYSDKHSVFRVARQDARTGHGMTQFGRALAELNIEILCANSSQAKG
RVERANRTLQDRLVKEMRLAGISDMEAGNAFLPGFIERHNAQFARVPARP
DDRHRPLNLPPDRLADILCWRDQRYVGNQLTFTYEHRRILLEESDLTRGI
VGKYVDTYAFPDGRFEARWKGISLPYRSFDPEQQHVTHAAITANKRLSDV
LALARSLQESQPPRVSRVGRQRTVYEPTGRRNDGWNSKLARRARQRADGT
AKPPDIAAE
>RSP_1466 Putative mutY, A/G-specific adenine glycosylase
MRDTDESPDAGDISARLLAWYDRHARVMPWRVGPAERRAGHRPDPYRVWL
SEIMLQQTTVAAVRDYFRRFTDRWPDVEALAAAPDADVMAEWAGLGYYAR
ARNLLKGARAVVALHGGRFPETRDGLLSLPGVGPYTAAAVASIAFDEPAT
VVDGNVERVVSRLFAVETPLPAAKPELTRLAATLTPQVRPGDHAQAMMDL
GATICTPRKPVCSLCPLRPDCEGHRAGLEAELPRKAPKAEKPVREGRLWI
AVRADGAVLLETRPERGMLGGMLGWPGTDWDRSGGPAGAPLEADWRETGV
EVRHTFTHFHLRLEVLVAQVAEAALPARGSFVPRADFRPAALPTLMRKGW
SVAAAAIRHPTGEERLA
>RSP_1400 UMUC-like DNA-repair protein
MPRRTPQRKEGAPARGATVDLPQPSVPLYDPPMPALCRDCLTPFDGGTRC
PACRSPRVTAHPELFSLSIAHMDCDAFYASVEKRDDPSLRDKPLIVGGGS
RGVVSTCCYIARISGVRSAMPMFQALKLCPEATVVKPRIDVYAGVSRQIR
AMMEDLTPAIEPLSLDEAFLDLSGTERLHGAPPAVLLARLLRRMEEELGI
TGSVGLSHNKFLAKIASDLDKPRGFSVIGRAETDAFLRKKPVRIIWGVGT
ATQSALERAGIRTIEDLLRWEKADLVARFGQTGERLWHLARGEDRRRVSA
DHALKSVSKETTFHEDTADPEILDGHLWRLAEQVSDRAKARGLSGRTVTL
KLKRTDFALVTRRHALAGPTQSADRIYREARALFDGARTAGPFRLIGVGI
SDLAGAAEADLTGDLLDPNAGRRIAAERATDAIRARFGHDAIIKGRSLR
>RSP_1814 conserved hypothetical protein
MSGEVSYYAGQTAEEAVARIYDRSGRPVAARRWRGVSGEIDLIAREGAEV
IFIEVKKSTSHAAAAARLSRRQMDRIYGAASEFLAGEPRGQLTASRFDVA
LVDALGRVEIIENAFAA
>RSP_0567 Probable Methylated-DNA-(protein)-cysteine S-methyltransferase
MKGAVLTPVGRVVLIEEDGTLVRLSWSDEEAEGESPLLAEAAAQIAAYFD
RRLTRFELPLALGSGRAALFHKALLAIPFGETRRYGELARGLGIPPQAVG
RACGQNPLPILVPCHRVLGATGLGGFSAPGGIETKIALLRHEGALLI
>RSP_0744 DNA-3-methyladenine glycosylase I
MDLTRCPWCGQDPLYTAYHDTEWGVPEWEARALWEKLILDGFQAGLAWIT
ILRKREAFRAAFQGFEPAVIASWGEADVVRLLGDAGIVRHRGKIEATIGN
ARAFLAIEERQGFSDFLWKHVEGRPVQNRFATMAEAPTETAAARAMSKEL
KAHGFRFCGPTIVYAFMQATGMVNDHLVGCHAHDRCASLAARPAG
>RSP_1527 Helicase, UvrD/Rep family
MSGLRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEP
QRILCLTYTKAAASEMQNRLFRRLGEWAMLDDAELRRALDALGVAAVGHE
VLAQARRLFARAIETPGGLRIQTIHSFCATLLRRFPLEAGVSPQFTELDD
RAARLLREEIVEELADRIAPEVVADLARAYTGEDFGALAEEVARNAAGLL
PPLDAPACRALYGVEGDEAALLAQVFLGGEEEWMPALIAALEAGSANDQK
AAAKLRLLSFASPTTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGA
LGPLADRLDALMRRVEAARPVRCCLLAAERARLIHAFAGVFLPLYQARKA
ARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDGGIDHILVDEAQDTSPDQ
WKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVAAFDRMRA
EFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH
IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVAT
RIRAMIEAGVQIPHPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLP
IAGADRLKLGAELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGEL
FDLAHGREGYLWRRLYDREAAHPGTVAILRDLRDQADFLRPFDLIERALT
RHDGRRRLLARLGEEAEDGIDELLSQALAYERTDVPSLTGFLTWLQTDEV
EVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTADRKPRERDELFTLEG
GARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVAMTRAQCWLIAAA
AGKLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAPQASAAAA
AARPVLPGWAWAPATEPPAAPEVLSPSALGGAKALPGDAMPTEEALAHGS
AVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAPVLAEARAVLSAEHLAEA
LVPHALLEVAVTAEVAGRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE
EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSAL
VRATTT
>RSP_2185 nuclease (SNase-like)
MRPARRGGHVCGMLRLRSLLVLAALLPLPVLAAPVEGPARVIDGDTLEIE
GVRVRLFGIDAPEHDQTCGDPDRLWPCGAWATERLELMLGGGAVRCEGDE
RDRYGRLLATCEARGEDVGARMVRDGAAVAYRRYSARYVREEARAEAEGL
GVWSGPMQRPEDYRHAPPAPPPPGECAIKGNVSRNGRIYHMPGQADYART
VISGPEEQWFCTAAEAKSAGFRPAKR
>RSP_2381 putative 3-methyladenine DNA glycosylase
MEGQAACFAREAPAVAVDLLGAHLQVRGVGGRIVETEAYTPDDPASHSFR
GPTPRNAAMFGPPGCAYVYLSYGIHLCLNVVCAPGHAVLIRALEPTEGLA
QMAARRGTDVARLLCSGPGRIGQALGLTLADDGTAFGTRGFAVRWGAPVA
AGEILCGPRIGISRAADMPWRFGLRGSPCLSRRF
>RSP_0674 Putative HolB DNA polymerase III delta prime subunit
MAQDEIPEPDRVEGAPHPRETQALFGHARAEAEFLAAFSSGRLHHGWLIT
GPLGVGKATLAWRIARFLLATPPADGLFAAPPPDSLAIDPDHPVARRVSA
LAEGRLFLLRRAWDEKAKRLKTQITVEEVRRMKAFFALSAADGGRRVAIV
DPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTIRSRCRELRL
APLAPEDMARALAAAGVEADDPAALAELAGGSAGEAIRVANLEGVKLYRA
LVGLLSTLPRLDRAKLVALADAASGKGAEPQFELMLTLIDLFLARLARAG
TLRLLPPEAVPGEADLIARLAPDARAARLWADLAQSLGNRARRGRAVNLD
PAALLMDMVLRIDETAAQLA
>RSP_2749 putative P4-family integrase
MPKKAREWGALDVKRAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLR
TTVAGTRRAMGLGSYPEVGLAEARERAREAKRKIAAGVDPIEERKATRAA
LAAAQRRSLTFADAADKWIKAKLSDRPEKSQKAVRATLTAYSFPEIGALT
VQELTPQDVVRALNTIWTAKPDTATKMRGYLEAILSWATVSGYRTGDNPA
RWAGNLKELLPAPSVVAKGRAGNFPAVPVARLADWWEELGQREGMGATAL
RFAALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGREHRVPLSGPAV
ALLRGLPRLAGTGDLIFPGPRGGILSDMSVSAVMRRMQEDAETEAKMAGR
PVSAAGWRDTRTGRPAVPHGLRSSFRDWAAEVGYDRDMAEIALAHLVGSE
VERAYRRSDMLERRRAMMERWADVLAGRSGASVVEFRRA
>RSP_1966 possible ISSod13, transposase
MGEEVGVVKDLPPIHKSHPQSTPPETVARIKTLALAHPAYGCNRFEAMLA
LEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIE
KLNPCFRERHVESSAPGELLSADTFFVGALKGIGRVYLHAVVDTFGSYAF
GFLHVSKQPEAAVAVLHNDVLPFYRNLDLPVGAVLTDNGREFCGTERHPY
ELYLDLNGIEHRRTRVRTPKTNGFVERFNGTILNEFFRVAMRDNFYESVE
ALQADLDAWLVHYNTERPHLGYRNMGRRPVETVMSFVSQEG
>RSP_1981 Deoxyribodipyrimidine photolyase
MNVLIWFRNDLRVADHPALARAADDRVLPLAIVDPAEWADPARSGRQWAF
RAECLADLRADLAALGAPLAVRVGDAQAVLSKLCKLHRIGRILCLEDPAF
AELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVEPGPIPPARALRL
AEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSP
HLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAV
CPPGRPGGGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAM
AASGWLPARLRGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR
RVALGRPVDPERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARG
LLGRRYPEPLVDPSAARAAGRTLARRPTARVEVIEGAAPRRPASDPTQQL
CLDL
>RSP_1485 ATP-dependent RNA helicase
MTQTDIAAPLAAALAAKGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKT
VAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEA
GAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRDHIERGSLDLSGLRA
VVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALAKEFQ
QDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFC
KTRLAVNHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIAT
DVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPS
EVRKAQRLLTGAKLVADWGKPPSADEVQERDDARLLEHPVLGQDLSDEMP
LAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDLAPPEPSQRAPRERGE
FGEAVWYAVAVGHTGRAEARWLLPQDLRGGRRDQERDRRHPRPAGADLRP
DREGGRWEVRRRARDRGGRGHGAPRRRAHAGAPRTRAAQAVRRARPPRPG
RGAPAREGALPAQALALRRGRSGRGPWRLDPGRPPRAGAPAAPRGRRAVR
EA
>RSP_0563 putative site-specific recombinase
MSLAIPPAARDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLG
EGYGLKRLASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAER
EGVDATAVLSARGPKFRRKLPRPLSEADAKALLSTVAEDAAEDWIRARDL
AVVTLLYGCGLRISEALGLPGTAHPLPEVLRITGKGDKERLVPSLPVARA
AVARYAALCPFDLASGVLFRGARGGPLNPRLVARTMERARATLGLPPTAT
PHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYA
KAHPRA
>RSP_1662 Integrase/recombinase
MQRIRRGDRVLCYHRPTGTRLPDLPETHPDFIAAWAKAEASKPDLAPPVA
DKSVAKVVRALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQK
HVEMDLGKLDPNPRNVSLKCWRLIFAQAKADGIIESDPSHEIGKIVTKSP
GHVAWTTAEVAAFRARWAVGTRQRAAFELLAWTGCRVSDACRMTRTHLGS
DGLMTFRQQKTGGPAYVPWTCALPSWALRWEEERETVRAAVMATAGFTLL
ETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIAEAGGPAH
AIMAWGGHASLSEAEAYTRAASRRGLVMGPEQERNDVNDPGNSCKRAK
>RSP_1208 NUDIX hydrolase
MIRRYGDPVRADRHYRRRPGVYAVLLSGDDILTTFQETPLPEFQLPGGGI
DPGEHPMAALHREVREETGWRIGGLRRIGAFRRFTYMPEYDLWAEKLCTV
YLARPIRRLGPPTEPGHHAVWLPVEEALVRLGNAGDRALLAAALR
>RSP_0901 N-6 Adenine-specific DNA methylase
MRIIGGQRRGLKLAEVGDGDARAHLRPTSDRVREAIFNLLLNGGYGNPVA
GAHVLDLFAGTGALGLEALSRGAQRASFVENGTAALALLRRNIALMRAEA
ATAVERRDATQAPPVPATPVTLCFLDPPYGKGLGERALAAHAGWLAPGAL
VLWEENIAPVPPEGFTQLDQRRYGDTLVTILEAP
>RSP_2040 possible Transposase fragment
MQIPRTDGVVRSDPCRLTDERMERLTPFFPKSHGKPRVDDRRALSGMIFI
NRDGLRWCDAPREQA
>RSP_0838 putative DNA polymerase III, delta subunit / DNA binding
MILRGAEAVRYLAKPDPSRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAA
EMRLTRLPASDLRRDPAALMDAMTAKGFFEGPRAVLVEEAADGLTALIGD
VLKEWRPGDAQVVVTAGGLTGRSSLKKLFEAHPSAVCIGLYDDPPTREEV
DTMLRQAGLGQIEPQAMAGLTALARDLDPGDVRQTVEKLALYKLGDPAPL
SAADVAEMAPVSIEAGVDEVIHAVAEGRRTEVSPLVRRLEAQGVTAVALC
IGAMRHFRSLHRLAAGADPGRGGFNPRQERMQRQARQWGVNRLEEAMALL
VETDLTLRSASRAPAMAVMERALIRLCTVR
>RSP_0405 probable single-stranded DNA-specific exonuclease
MTGPAARAFLGVEASATGRRWVGPSPEEDRLAEAMAQTTRLPLALCRTLV
RRGVPASDAESFLAPALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIF
ADYDVDGGSSAALLIVWLRALGRSATLYIPDRIDEGYGPNVPAMQALAEA
HDLILCVDCGTLSHEPIAAAKGADVVVLDHHLGAETLPPALAVVNPNRQD
EDGALGHLCAASVVFLLLVEANRRLRAEGVQGPDLMAMLDLVALATVADV
APLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP
RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREE
ALAQAEARGISGPLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIGFENG
IGKGSGRSIAGVDLGASIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAM
ERLGELLARQGAAEAGPADLRLDGLLMPSAATAEFVEQIDSAGPYGAGAA
APRFALADQRVTCRRMGDKHMRLTIGGAEGRLEAVAFGCFDGPLGPLLEG
GGAGRFHLAGRLEIDTWGGSARVQMRLEDAARA
>RSP_1339 Formamidopyrimidine-DNA glycolase
MPELPEVETVRRGLEPAMAGRLIAEARVNRADLRWPFPPRMAERLTGQRV
LRLRRRSKYILADLSGGQSLLIHLGMSGRMLVSGAQLGEFFHDHPAPSRH
DHVVLEMEGGARITFNDARRFGAMDLVATEAAEAHPLLAVLGPEPLGNAF
DGAYLAARLEGRRTPIKAALLDQRIVAGLGNIYVCEVLFRAGLAPGRLAG
SLSRAEAEGLVPLIREVLLEAIEAGGSSLRDYRQADGELGYFQHTFRVYG
REGLPCVTPGCSGTVGRIVQSGRSSFHCPLCQR
>RSP_6230 hypothetical protein
MSFKFIPAALVLAIAGSTGAAFADTNTAQIAAGAGVSAESYSLGQIVSLK
AARAAHKPALVQWILAHPKGADATQAMDAASVRQLELALGVPHGQYSPTE
LVKLYGAIESGNRATEAFILKGETGTTVQADSVVAKAQLARSLGVNPADY
TLSELIALQPVDRSNG
>RSP_1031 Endonuclease III
MARQLDYRTIHEIFARLHALEAEPRGELEHVNAYTLLVAVALSAQATDAG
VNKATRALFAQVTTPAQMLELGEEGLTEHIRTIGLYRNKARNVIALSRLL
VDQYDGEVPSSRAALQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFRVAN
RTGIAPGRDVEAVERALEDHVPAPFALHAHHWLILHGRYICVARKPRCGI
CPIRDLCPYEEKTA
>RSP_2143 DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor)
MMADAPLILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEALGAAP
KWRLGLGVEAFARALEGLGSRLVLRRGPALAVLEALVAETGAAGVHWSRL
WEPDWRARDEGVKAGLRQAGIEAASHAGHTIFEPREVETGQGGFYRVYTP
FWKAVKDRPVAASSPPPARLLSPAEWPVSERLACWDLGRAMHRGAAVVAP
HLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRLSENLTYGEISA
RSLWHAGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEIARRNWRGDW
DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL
TKHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNP
ATQAEKFDPESAYRQRFLAEIARRPGPEALAFFEAVPRSWGLRPDRCYPR
PVVGLAEGRERALAAYGRRNN
>RSP_2361 putative integrase/resolvase recombinase protein phage-related integrase
MARLSHLLRRGAAYYARTRVPLDLIAIVGKKELVKALGTKDETEAKRRLY
PQLDAWQREFDDLRARRSLVAADREHAVWDHYTAALTRDEAERATLPGEA
EIAAAEADVIRRADRGEITSAEPLAILDATLELQVKQQAPALASDTRKAK
LADLREHLVKGETALISHEVDDYLNRNRLLVERGTPDWISLARRMMRAEA
EALERTLERDRGDYTGQPRDPLVKPPTAEKRAEMEVAPPGESIAEAVEAF
RTENPRNVSKGRIEEACRDIGVFMETVGPSFPVSKLTKKHVREWKALLIK
YPLRATEVAEFRGMTIRQIVEANEQAKRPVLSDRTVNRYLSSLSAFCSWA
EANGYIASNPCSGMALPKERGSKTLPFTSDQMNTLFRSPLFAGCESEAAW
RYISKPGPVLIRDHRYWVPLIMLYSGARPGEIAQLATSDLRQEHGRWIFH
ITTEGETHEEGKQVKTAGSMRVIPVHSELIRLGFLAYHSQRVEAGDKRLF
PGAKRNERGQMMSEFSREFGKYLARIGLKSGRGLSLYSFRHGAADALRRA
GYLDNEFGFILGHTEGSMTGRYGIMPQGMLEQRVKLIEAIQYPGLNLDHL
ANVIT
>RSP_1651 hypothetical protein
MRGQKPKVSNVIPMKGDLAAPVPEAPGWMSAEGREVWDRLAPVLVAKKRL
EPAFEDPFAVYCEAVADVIRFTGDIAAFGSWYEVETRNGRQQKKRAVWGQ
RQDAIAVMNQLAARFGLTPVDEARVRVTGQGDLFDEILKTLDGAD
>RSP_2727 probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
MTGRILLTPDCIAEGVACLAEREPRFARAHALTGDPPLRRRPEGFAELAG
AILGQQVSTSAAAAMRMRMEAAGLLDPEAALLAGEEALRACGLSAAKIRY
IRALAAATVDYAGLARLPDAEVVATLTALPGIGRWTAELYAMTSLGRADV
LCAGDLALQEAARLLFELEVRPSERALRAMAADWSPWRGVAARLLWAYYR
HAKGREGTA
>RSP_0136 putative integrase for prophage CP-933U
MPKGERTRTDYRRWGLRLAEEFKDDPAEIFEDPGSRGEVNEWRKQWAHSP
RQYDYAGTVAAVLLNWAVDQGKIRQHHCQRLRKVYEVDRAEIVWTPDHRE
AIEAKAPEWIRRILTAACETGLRVADLTKLAWSHVEATPHGRRIRVRTSK
RKRVAYIPVTEAMGKLLDATPRDRMLILLSERGKPLTPHRASEGLRQWRD
KAGLTPESLGYDLRLQDARGTAATRLLSAGLSLAEIAAHMGWSIRHAAAV
IEHYARVSPDETDAILVKLATAKGSAS
>RSP_1627 Putative N-6 adenine-specific DNA methylase
MKQVPPAAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRR
RFRPRLEVMNDRNGEIINLFRILQRHYPQLLEIMRFQICSRREFDRLRVT
DPATLTDLERAARFLYLQRLSFGGKPNGSFGISPGNGPLFSLARLEPLLD
AARTRLDGVVFECLDWAELIPRYDTAETLFYLDPPYFGGENDYGRGIFDR
AQFARIAEILGGLKGAFLLSINDTPEIRALFGRFHLEPVRLSYSVAASGS
TEAQELLVSNRERIATLL
>RSP_2497 ATPase
MANGIKRQHEPPRIVGDLLQSEIAEKQARSIRCQMTIAKLPLVKDIEQFD
FTGTPVNEALVRELATRSLVADQRNVVLIGGTGTGKSHLAIAIARALIRN
GTRGRFFNVVDLVNKLEAETRSGKQGRTADYLGRLDFVILDELGYLPFAQ
AGGQLLFHLISRLYERTSIIVTTNLAFGEWPTVFGDAKMTTALLDRLTHH
CEIIETGNESWRFKNRA
>RSP_0675 putative TatD-related deoxyribonuclease
MTSQTPPQIVDSHCHLDFPDFDGEHEALIARARAAGVTRMVTICTRLRHE
PRVRAIAEAHEGVFYAAGTHPMSAAEEPMATVEELVALAAHPKFVGIGET
GLDYHYTPDSAPVQQESLRIHIEAARRTGLPLIIHARDADADMARILTEE
HRAGAYGCVMHCFSSGPELAQAALDLGFYLSMSGIAAFPKSAELRAIFAA
APLERILLETDSPYLAPPPFRGKRNEPAYTAHTAAKGAEVFGLSLADFAA
ATSANFDRLFAKAAA
>RSP_1032 possible O6-methylguanine-DNA methyltransferase
MTDSLAAERPAYHYAVIARALAEIDAGGPALSLEDLAARIGLSPAHFQRI
FSQWVGVSPKRYQQYLTLDHARRLLAERFTVLDTALATGLSGPGRLHDLF
LRWEAMSPGDFARAGEGLEIGWAWVASPFGEALAMATPRGLCGLAFSAEM
GREAAMADLAGRWPAARLTEDPDRVVPLAEAAFGGAGADLHLIGAPFQIK
VWEALLRIPSGHVTTYSEIAQSIGHPAAVRAVGTAVGRNPISFLIPCHRA
LRKSGGLGGYHWGLPVKRAMLAWEAARADAIA
>RSP_1206 putative phosphohydrolase (mutT/nudix family protein)
MPEALRRALESGGAASSDHDLNPEIVLPPDRRLRAAAVLVPVWQREGGAR
VILTKRASHLAHHPGQIAFPGGKIDPTDASPEEAALREAREEIGLPAEMV
EVVGRLPAHETVTGFTVIPILAEVRGRFVPVTQEDEVEEAFTVPLAHLLD
LSRYRVEQRLWRGGWRRYYVVPYGPYYIWGATARILHGLARRMQG
>RSP_2092 Putative uvrD/DNA Helicase II
MSQIDESEAFEAAVPLSQRAMAARPRPYIDELNPAQRAAVLALDGPVLML
AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL
GQVEGMPWMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQLIV
AANIDEKRWPARMLAGLIDHWKNRAWTPAKVPASEASAYNNRGTELYDQY
QQRLRELNATDFGDLLLHVLTIFQSHPDVLEQYRRWLRYILVDEYQDTNV
AQYMWLRLLAQTHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAQVI
RLEQNYRSTPHILAAASGIIAANAGRLGKTLWTERQEGEKVRLIGHWDGE
EEARWIGDEVESFQRGRGGLGPFRLDDMAILVRASHQMRAFEDRFLTIGL
PYRVIGGPRFYERLEIRDAMAYFRLAVSPDDDLAFERVVNQPKRGLGDKA
QQEIQREARAHGTSLLEGARSLLARGGIGGKGAGQLRAFVDGMDRWHGTT
LDRDHDHIRLAEQILDESGYTAMWQADKTPEAPGRLENLKELVKALEQFE
NLQGFLEHVALIMENETEESVDKVTIMTLHAAKGLEFPVVFLPGWEDGLF
PSQRAMDETGLKGLEEERRLAYVGITRAEQLCTISFAANRRVYGQWQSQL
PSRFIDELPSAHVEVLTPPGLYGGGYGAAGMASSLEAQALRADVYDSPGW
KRMQTRAGGRPMAQPRESRHVTIDLEAVSAFAEGDRVFHQKFGYGHVMGI
EGDKLDIDFEKAGAKKVVARFVVAAHQADDIPF
>RSP_0003 putative site-specific recombinase
MSSAIQIKGDSFRRQAEASAKYAAEHDLDLIDDYKLADLGVSAFKSDNLT
TGALGRFVAECEAGEIEAGSFLLIESLDRLSRDKILDAFSLFARILKTGV
KIVTLSDGQVYDGSSDQVGSIYYAISVMIRSNDESKIKSTRGLANWSQKR
KLAAEHGVKMSSQCPAWLKLSVDRKSYLIDKERAKIVQRIFEASASGKGA
NLITKELNRDKVPTFGRGALWAEAFVSKTLRNRAVLGEFQPGQYVSGKRQ
PAGDPIPGYFPPVIEEELFDIVQASLRGRLLAGGRRGEGQSNIFTHVAFC
GYCGSKMRHRSKGSRVKGNPPHRYLTCFNRFNGPGCDCKPLPYAAFERSF
LTFVRDVDLRGLLEGAKRKSEAKTIADRITVNEEKVRKADERIRDYLIKI
EGAPDLAEIFMERIRELKAEKDDLVRSIEESNDALSKIKSDNVTDEELAS
LISTFQIHAGKIVLGLRIVSNRSLSALTSIRMVKSAKMIRRLILCALREI
LMPKRSLRQ
>RSP_2353 conserved hypothetical protein
MTTATRGRKPTLNADRAPLARVPKAPSHLSPEAKAEWKRVLPRLVEDRIV
TTADLGGVEDLCTARGIVRQIERERQAAGGVIDPKMFGVLNRAAQTARQL
AAEYGLSPVSRSRIASTAAEDDDADNPLAVT
>RSP_1793 Single-strand DNA binding protein
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKE
RTEWHSVAIFDENLARVAEQYLRKGSTVYIEGQLETRKWQDQSGQDRYST
EVVLRPFRSSLTMLGGRGEGAGAGGGMGGGGYEDRGGPDNYDNYGSGPRG
GASSGGAPSGGGRRNDLDDEIPF
>RSP_0419 conserved hypothetical protein
MDLAAEAGGDDKTRVRPAATVILLRDGPSGPEVLMGMRGASAAFMPSKFV
FPGGAVDEADARVPLAGLPAPVCLRRLGDEGPALAAAAIRELWEETGLPL
GVKGAWTAPDGWKGFAGRGLRPDASGLRFVFRAITPPGRPRRFDARFFVA
EAARLAADPDDFSAACDELSHLQWLPLAEARRLDLPFITEVVLAEVSALA
QGRDAGPGVPFFDNSGPVPTFRRLE
>RSP_6050 conserved hypothetical protein
MQTDKNMTGSGTASDPSGRPGFTDTAREAARREMDDARERLHGAAGRARE
EANRARSSVSRLVLDEMDRRKEDLCDSIHGIAQSMRKGAEEAEKRDDAPA
PPQMIHRAIHTLDDMADRMRHRSAEDMTRSVARFGRENPALFVGGALFAG
LAIGRFLVSSSNRPRGRDWDEGDAMRADRWRGAAPGSSAHERASHEPLGA
KPHDVGGQNRPAMAGRPGAAPFSAPGGAAMPGTEPPRPGSANEATARSTG
MAPTAASVKPLGSGPTSGGKDGGS
>RSP_2123 Radical SAM domain protein
MSSRDPSLSPTLRLRARGALANETGRFETERREAFDDGWDLPEEERLLRT
EVRIERPRSALTYNRSPDLPFDRSVNPYRGCEHGCIYCFARPSHAYLNLS
PGLDFETRLIARPGIAAVLERELRARSYRAAPIALGTNTDPYQPIEATHR
LMREILEVLAAFRHPVAITTKGTLIERDLDLLAPMAAEGLLRVGLSVTTL
DPNLSRRLEPRAPSPARRLQTIRRLAEAGVPVRAMIAPVIPGLTDSELDR
LLAATAGAGAVAASWIVLRLPREVAPLLRAWAEEHYPDRAAKMLARIREI
HGGRDYDPAFGKRMRGEGIWADLIARRFRLAAARHGLDRAQPPLRSDLFR
PPPRPGDQLSLL
>RSP_1346 DNA gyrase, subunit B
MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVV
DNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVI
MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGREHFAR
FENGETVEHLRVVRDAPGEKGTEVRFLASAKTNRPDGTFSNLDYSFKTLE
ARLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREFVRYLDRSKSPV
MPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFR
GALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQT
KDKLVSSEVRPAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAAR
KAREMTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGR
ARKNQAVLPLRGKILNVERARFDRMLSSETVGTLITALGAGIGRDEFDIA
KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGGFLYIAQPPLYK
VARGKSEVYLKDQAALDDYLIHQGIEGAILRLATGEEIAGQDLLRVIEGA
RQFRRVLDGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDL
TAAEYERGWKGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQV
SGQTRDVYAPGARLVRKDREQPIHGPIALLKAVLAEGEKGLSLQRYKGLG
EMNPEQLWETTLDPEARTLLQVKVDDLAEADDIFTKLMGDVVEPRREFIQ
QNALNVENLDT
>RSP_2080 Putative Tyrosine recombinase
MLPRVHRVRRGGTVYKYHRRTRKELPRDVPEDDPRFVAAWLAEEQRAPTV
RSRSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLK
DLLPRHIRADLEPLSPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRK
KMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLG
PQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVY
MLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALAEHGASV
LVMQSWVGHTTLLEVQEYTRRADRRRVISGGHPVKRDPAGA
>RSP_0572 putative exonuclease
MLDRLNLRVRILLFFAALAGGANVAVAIGLFLAYRRLDAPELLPAFEQVG
LVAGLVILGLVTWIWYLFDANVALPIIRLASKLRARAHARIDGGIEEPTA
RYLGDLAPAASATALTLAETRDALAESVARETSRLSSEKARLEALLSDVP
VGLLLCSGDHQLVFYNGPATDLMNTAGAPGLDRNLFDYLRDGPIRHAHRR
LIEAGDPDAASDILCTTVVGARVLAARMRLIGGETTKPGYVLTLRDVTSA
LASYARREALLAEVFDRIRRPAANLQTLFEVLPPGSCPPPDMDRALRQEA
AGLAAAVTELGARHDESRHDGWPLSLTRASDLLDGLHARMEQAGLSAEIG
EAPLLLRCNGFEVIGLVATLAARVAARRTGHDFRVTLTEDGTEAMLRLVW
HGEPLPVGLLEDWLGEPLEPGVPEVTGRTVLSTHTTEIWPEPAGAGASAL
CLPLRTARRTGRRPRPIPRAVVYDFELLSKARYEKVAEARLEDLTYVVFD
TETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEVH
GITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGR
RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVA
TADAFLKLLPMLQGRGFETFGAVLSEVRRHGRLLKDLNEPHLTDA
>RSP_0621 Possible DNA helicase
MALLGFLRSRREDKTPLLERCLSVDLEVHPKTAEIFDMAAVRFGDGPAVV
APKANIRQGLDRLEQALGKATHVVGHNILRHDIEHLLAARPQLLEKMAAP
IDTLWLNPLAFPRNPYHHLVKHYHDGRLQAGHVNDPELDARLVFEVLENQ
IAALSEIGGRSPETLIAYHYLATRMDRAEGFDAVFSEIRRARQPDRAEAF
AAIRGLLAGKACGARVEPALEALSDPRAGWPMAYALAWISVAGGDSVMPP
WVRAAFPQAALIVRDLRDTNCGDPACGWCAEMNDPVGALRKWFGFDGFRP
QPADAHGRPLQQVIVAEAMAHQNVLGILPTGTGKSVCYQVPALSLFDKTG
ALTVVISPLVALMADQVQGMERAGISSAVTVNGMLSMPERQDALDRVRLG
QAAILLISPEQLRSVSVRAVLAQREVGLWVLDEAHCVSKWGHDFRPDYRY
IGRFIREFSGDATPAPVLCLTATAKPEVVRDITEHFRGRLGVELGLFDGG
ATRTNLTFSVLATTKESKLGDIMTTISGHLPADERSGAVIYCATRAETER
IAEFLKRQGIAAEHFHAGLTPDDKQTVQERFRVGDLRVIAATNAFGMGID
KPDIRLVLHADIPGSLENYLQEAGRAGRDRQPADCVLLYHSDDVERQFTL
TARSRLERHEIGAILKALRRIDEHTRNSGKVVASAGEIVREEKDRAFVRD
SATDDTRVKTAVSWLEEATLVSREENRVQVFPSSLLVRTLAEAEARLAGA
GITQTRRRQLLGIVRHVINTPPDQGISTDELTGISGLTHRALGKAMADLE
ALGIARNDLALTVSVHVGIENQSRQRLTRAVRLEEALIARMRELAPEADV
GQGAPLDLAAASQVLRGEGHEEASPHILDRLLRSIERDGRDSDGGRGNIR
LRKLSSKTLEVILQRSWRVVGQTASVRWGAAEKLLEVLIGKVPTGTRGKD
IQVETTAGELLAALSGDAIAAAGVKDRTKLMERALLWLHEQQVMTLGKGL
TVFRSAMTIHLKPGHAGFTKKDFLPLEDHYREQTLQTHVMAAYAEKGLER
IEEAVRLSEDYFALDQESFLRRWMPGRGVELRRQTTGKAWKQIVEDLGNP
VQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVL
SYNRHAAAEIRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQH
DFQDVLREAVRQINGEGLSRTEAEAQREALIQGYRWILVDEYQDIGREEY
DLIAAVAGRSLEDPDQRLSLFAVGDDDQNIYAFNGASVSYIRRFEEDYRA
RPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPITVDKMRSLYPGGGA
MARHDPVGQGRVQFLDVAADDTAQAMAAVEELVRIARLDPDFSWARCAII
SRDWRRLGPVRAYAEKLGLPVEMANEKLPSLWRLREMQRFVASLNRRPAA
MLTIPDMLELLNEQRSNRWIDLIAEGIADLARELGRKTMPVPDTIEWVAE
WAQDIRSAQRGLLLLTAHRSKGLEFDHVVILNGGWKTLSQGEDGEAPRRL
FYVAMTRARRSLAVVTHGLHPFVEADSDCEMLRRVEMPRRLDLPQPDHYQ
VPDMGVVDLSYAGRLPETSPTLAAIAAAQVEDPVTIERREGKWLILDRRR
RVLGRMAGGWAPPEGTDLVSGKVGAIVRWRRSDNEERFQSYLKREEWETI
LPEFVFRKTAPARTV
>RSP_2388 conserved hypothetical protein
MGEGRHIGLTSNGSGEVRPQCGAICWRLEGGELQVLLITSRDTGRWVIPK
GGRIEGLDDADSAAQEAWEEAGIQGEIAPQPLGRFTYQKIARNAASIACE
VVVFPLAVEDMSDVFPERGQRKRKWFTPDKAARKVAEPGLREILVRFDPA
PEPDPERDDGLPLGDY
>RSP_1028 DNA polymerase I
MTFGKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRY
VENNKGPDAPTHVAVIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLT
REATRAFNIACIETEGFEADDIIAALSCKARDAGGSVTILSSDKDLMQLV
GDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDVQALAGDSIDNVPGAPG
IGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRISKRLVA
LDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASLKVEPPP
APTAAVLRNEGVPEIVEQVEAALPFDSASYACIRDAEALAAWIARIRDLG
HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL
VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDT
MLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVE
QAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMA
GVQVDRDTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEK
MGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTD
ALQEHIHPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREA
FVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMF
NVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYF
ERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINAKGPGAGFARRAA
INAPIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAADA
LIERVREVMEGAADPAVKLTVPLTVEAGRGLNWAAAH
>RSP_1001 hypothetical protein
MDGLDWNAALAALAWQVDLGATEAILDAPVNRYELGDAQPVPKAAAAAVA
ATAAPDPVAAADPVEEARRAAAAAPTLEALREAMAAYDHCDLKRGARNTV
FSDGHPAARLMLIGEAPGREEDAAGRPFVGRAGQLLDRMFAAIGLSRTSP
DAETALYITNVMPWRPPQNRDPSAEEVAMMTPFLARHVELAAPDLIVVTG
NTACAALLGRTGITRLRGRWAEAWGRPVMPMCHPAYLLRNPEAKREAWAD
LLEVKARLTR
>RSP_6018 hypothetical protein
MAMFPVHIRETSPRRLAALRHTGSFEEIGATFGQICQILEERSLLSQAGC
MIGVYWDNPLLAPPGALHSHAGIDLPEAMEIAPPLEELRLSGGRHAVLQY
TGPYSGLARAYRYFFSQWLPEAREIQAEGPLIEIYRNAAMETPSDQLVTE
ICVPLL
>RSP_1525 putative Helicase/Exonuclease
MFDTPGPRLFGLPPGVDFPAALVRGLRARMAGAAPEAMARVELYVNTQRM
RRRVTDLMTAEGAGFLPRIRLVTELPPVPGLPAPVPPLRRRLELAQLVAR
LIEAQPDIAPRSALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHW
QRTQAFMAIVAPMFGADAPDAQALARMAVERIAARWAEAPPDHPVIVAGS
TGSRGTTSLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDALTAEDHPQ
FRFHRLMGLVGAGPAEVGRWTDEIPPSPARNRLISLSLRPAPVTDQWLTE
GRHLTGLAEAARGMTLIEAPGPRAEALAVAMILRKAAEEGRRAALITSDR
GLTRQVAAALDRWGIVPDDSAGKPLALSAPGRFLRHVARLFGRRLTGETL
LTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPFPAAADLALWAGTRP
ADGVADWARWLGGLIEGLDAAGPRPLADHVAAHLALAEALATGPAGDTTG
ELWLKEAGEAARAAVEELRREAPHGGELTPADYTDLFDAILARGEVREAV
QARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKA
GLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMNL
MSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVP
ARPDRLAVTGIRKLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHR
ILEAFVKDRAPGSDRPTERARLMRIAEAVLAEEVPWPAARALWLARLDRA
AAFFLETEAAHAGTPVVLEEEGRVDLTPLRFTLTAKPDRIDVLPDGRLHI
LDYKTGTPPTKKQQEQFDKQLLLEAAMAERGGFRGLGPAEVARISYIGLG
TSPKVESVETDAALLGQVWEGLHALVGRYMRREQGYVSRRAMFGERFPGD
YDHLARFGEWEMSDAPVPVPVGAEAPEAGSAEAGTDRDRGSCPEDAA
>RSP_1388 DNA-binding protein HU, form N
MSKPMTKTQLVATLADEMGSDKKTANAALDAIASIVAREVAAGGAVTLPG
LGKVVCRERPERQVRNPATGEQVTKAADKQVKFTIAKALKDSVNA
>RSP_1343 DNA polymerase III, beta chain
MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLD
IEVVDRTPAVVERAGATTVSAVMLHEIVRKLPDGALVGLSEDPASGRLTV
TAGRSVFSLATLPREDFPVMASSEYSSTFKAPAPVLRRLFDKAKFAISTE
ETRYYLNGVYMHVATGEEGSVLRCVATDGHRLARIDAALPEGAQGMPGVI
VPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMTSKVIDGTFPDY
SRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLSV
NAPDSGAAEEELAVAYGDERLEIGFNAKYLLEIASQVDRENAVFLFNSSG
DPTLMREGNDMSAVYVVMPMRV
>RSP_0946 putative DNA topoisomerase I protein
MKDGCVLVEMSDGSEATVPRGLVYVTDAEPGITRRRCGRGFVFRGPDGRL
LDRAERARILRLGVPPAYEKVWICPLENGHLQATGFDARGRKQYRYHPDW
GSWRSQAKYALLPAFGEALPRLRRRVARDLKAEAGELAFSLAALTMLIDR
TFLRVGSSAYAEENKTFGATTLLARHVKLKDGEVRLDFRAKGGKRVRQVL
KDRRLHRILQEIEDLPGRNLFTWIDEEGQVRRVASHHVNDYLAEATGLAG
ASAKTFRTWGGSLAAFAVARATEGKLTVKMMAEGAAERLHNTPTISRTSY
IHPRILGLADLKPDERLAQLEAVQPADLPDLRSDERRMLGFLLG
>RSP_1678 putative RecO protein
MMEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRKIAPILQ
PGAQLDLTWKARLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHV
TLPEREPHSTLWQESMVLLDALDRPGWPPAYLRWEMRLLEETGFGLDLTR
CAVTGSREDLAFVSPKTGRAVSSGAAGGWADRLFPLPLALLGQGPASAEE
VRQGLAITGHFLGRELAPLLNGRPLPEARARLMELLARA
>RSP_2679 ATP-dependent DNA ligase
MPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRL
HWDFRLEWNGVLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPK
GEYGGGTVMLWDRGTWEPQGDFAEGLRTGQLKIRLAGERMRGRWTLVRMK
PRPREKAENWLLIKEHDTHESEQTEELVERHMTSVATGRTMEQIAAGKAP
PRRTRQAALPAFRPLQLARLVSAAPEGEDWIHETKFDGYRCLAALAGGRA
RLYTRSGLDWTAKFGALVEDVEALEAQEALIDGEVIAPGREGGSFSELQA
RLKSGGQLLFMTFDLLLLDGEDLTGQPLLARKERLKTLIGKGRGAVRFSG
HIRGHGPEVHERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCAHRQEFV
ICGWNASDKPGRPFASLVMGSYEKSRLVYRGSVGSGFGAPLFRELKPLLA
ERAQSACPFDRTPAEAKGAHWLKPELVAEVSFTELTAEGHIRHGVFAGLR
SDKDAREVRLEEPAPETPAPRKSGVRKKGTKTARPDAPSPDEPAPEPARK
PRTARGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAVTKREVAEHAEA
LAPRMLRFLKDRPVSLLRCPEGAAAECFFQKHRTRGMPVAMKTVPVETKS
GPEDFITLPDVAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDEG
LDFAHVRTAAAELRGLLTDLGLPSVPMLSGGKGVHVIVPLKPKAEWESVK
LFSRALATHLAQEAPDRYTATMAKAGRKGRIFIDWLRNDRGSTAIAPYSL
RARPGAPVATPVDWDELASARSGGDWTIRSIRDRLDRPCPLAEASARPAT
LGRTVIGRLERLVAGGKP
>RSP_0730 conserved hypothetical protein
MAHENRDTARDPATATALARLIWPLRLTWAGLWAERLVRSFWPVWTILVA
TLAALVFGLQDLLPLDWVRGGLALAVLGALIAAGFGLRAFRRPTRTEALS
RLDASLPGRPISSMTDAQAIGSGDPWSRAIWEAHRRRMAERAAEARPVRP
DLRLARRDPFALRYLALTALVIALMFGSIWRVASVTGLAGGGAEAMVGPS
WEAWAQPPSYTGKPSLYLNEIDAPEITLPVGTRLQIRLYGEVGDLTVTES
VSGRPAGEAPAGPAQDVEVRQTGALTIDGRGGRSWKIMALADRPPLVTAD
GQMEREADGQMKLSFSARDDYGVTGGQATILLDLPAIDRRYGLAVDPEPR
EPVTLDLPLPIAGNRAEFSETLVDDLAKHPFANLPVVLNLSVTDAALQEG
RAEPLKVVLPGRRFFDPLAAALIEMRRDLLWNRTNGPRTAQILHAVTHAP
EGLFRNERAFLRTRVLMRKLDAEAATLAPAARDEIAEQLWEIALMVEEGD
LASALEALRRAQDRLDEAIRNGASQDEIEQLMQEMRQALDNYMRELAEEA
QRNPDQQQAENRQTMEMSGDQLQEMLDKLQELMEQGRMAEAAELMEMMRQ
LMENMQVTMGEGQGQGPGSQAMRDLSETLRDQQGLSDDAFRELQQGPNGG
RPQDGRPGEGEGQEGRDGRSLAERQRELGDRLNGMQNQPLPGQGSERGEN
GRRSLDDAGRAMREAERALRDGDLPGALDRQAEAMEQLREGMRELGEAMA
EEQRQQNGQGEGEAFGRADPNSQRDPLGREPGETGRIGSDRNMLQGEDVY
RRAQDLLDEIRRRSGDLSRPEIEREYLRRLLDMY
>RSP_0959 ATPase
MPSGTRFRSWRPGSTRRSGLPGPSSGPPRRCPSRTSRRRGPTERRRWPWL
APAAMVAPMQAVSFSDDQAEAYDRVADQLRGMGVDLANGALSVPVEGKSS
VLAVVGKAGSGKTMLLASLTKALIEAGLEVVSGDWEGRKRKERRTLAILA
PTNKAASVLRLRGVPATTIHRILYSPVYDPQYERIAEWLAGNGKRPEVEG
LSEMALDRAKAFYEQVPSIPGALAAAGLRGSDFIKGWKRRDEPLDVGFVD
EASMLDERQFDDLREIFPTLVLFGDPAQLAPVGQSGKMVFDTMGEARKLT
LSRIHRQAEDNPILDLAHALADPDLSFETFEAMVERAARQDERVQVAQRV
DADLMARSPVLVWRNQTRIRLITAFRAAQGAPETELLPGEPLICDGIELP
LKHRKKRIDLEARGLIKGAQVIYLGPGNREGFARLHVVGAEDPQVSAASI
IKIEKPGEEEPFIPSAARMGAAFLHGAAVTIHKAQGSQWEVVQVFAPDLW
AAAQAGRSEAGVPLWKRLAYVAITRAEKRLVWVVRNRLALPQQPLSVEDL
PRTAPKLKLQSETETP
>RSP_1968 Possible integrase/recombinase
MTHSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGT
YGEYDFRAPRSAIIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATE
NPAVGIKKLNKGGGGAAAWTADDLKRFREAHPFGTTAHLWLTLQMFTACR
IDDARKLGRSNEIDRGGTLWLEFQPGKKGSAPVSIPMLPPLLKAARAQKV
QGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGKSSHGIRKAAAELLA
EAGCTQHQIMALMAHTQAKTSEIYTKGAQRRLLAADAAAALATLEW
>RSP_0780 hypothetical protein with ATP/GTP-binding site
MKGQLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPR
GSGKTHLAHIWAAQAEARLIPAEALARADLPALAADGAVAVEDAERLGGD
RAAEEALFHLHNLMLERAGALLITAAGPPRDWGLGLADLKSRMQAASVTR
LEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLVARMDRSCEAARALVAAL
DARSLAERRPISRQMAAELLGLTATD
>RSP_2898 putative DNA polymerase III chi subunit
MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALW
RVPEEGFLPHGMEGGPHDAVQPVLLGTGAIGNGAQALMLLDGAETQAAEA
APLERVWILFDGLDEAELARARGQWKALTGAGVKAQYWSEESGRWEKKAE
AG
>RSP_1123 DnaE, DNA polymerase III, alpha subunit
MFRVRSSDSGTAMPFVELSATSNFTFLTGASHPEELMRRAASLGLPALAI
ADENSVAGIVRAYGEAKEIARETGSAPRLIPAARIVVREGMSVTVLPRDR
AAWGRLCRLLTLGRRAAPKGSCDLGFADLLAHAEGQEMLLHPPARSSGGW
QTLAARLAAACPGRVALILAPHYAGQDRVRFERQALLAARLGIPTVASGL
PILHHGARRRLADVLTAIRLGCRVDELGRRALVNGEQRLRSEAEMLRLYP
GHEEAVFRSAEIAGRLDFCLSELRYEYPSEISKGESPADRLARLTREGLV
WRFPAGVPEKIAAQARHELELIGKLGYEPYFLTVNDIVRFARDRGILCQG
RGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHERR
EEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMAS
QIWGWGGPGALTERRLREIGLDPNDRRLWLALQLIDEIQGFPRHLSQHVG
GFVITEGRLDELVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLT
CIRKAFDLIESHHHTSYTLATLPRDDSQTYDMLCRADSLGVFQVESRAQM
NFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVHPYIRRRNGQEDPHLPSDA
LGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALATFKKHGNVT
ELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYAS
AWIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLW
DNVMERDREGRLALRLGFRQIKGVAEEEAQWIVAARGNGYRAVEDIWRRA
GVPPATVTRLAEADCFAALGLTRREAQWQARALSGDRPLPLFAGDMDGEG
IVEPEVVLREMTLGEEVVEDYVSFRLSLRSHPMALLRELV
>RSP_1342 dnaA, chromosomal replication initiator protein, DnaA
MTNETWVQVREGLLKRVGRNNFVTWIEPLRLMGLDEGVARFEVPTLFFGD
WVQRNFADHIRMRLTEAGSPVERLEFAVSNTPRAPLKEVKAAAPAASPAR
ARPAPPEEDLRGAPLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNP
LFLYGGVGLGKTHLMHAIAHDLQKRQPGARVLYLSAEQFMYRFVQALRER
EILGFKELFRSVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIVIS
ADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKADFYREQY
RGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDC
LADILRASDRKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVAMY
LAKQLTPRSLPEIGRRFGGRDHTTIMHGVRKIEELMATDSQLADDLQLLR
RLLQA
>RSP_1928 dnaB, Replicative DNA helicase, DnaB
MNEVRALREPQAEKSPEVLPHNIEAEQQLLGAILTNNDIFDRIASVIRAE
HFFDPVHQRIFEIAAARIQKNALASPVTLKAFLEEDAGLKELGGPAYLVR
LAGAAISAFAARDYAQMIYDLAVRRELIGLGRDIAAKAARVDVASEPKEQ
IVEAEQKLYRLGEQGQAERGFQSFLKAVTDAVNVANAAYQRDGGLAGIST
GLADLDKKLGGLHPSDLLILAGRPSMGKTSLATNIAFNIAKAYRRGRLPD
GAEGAIEGGVVGFFSLEMSAEQLAARILSEAAEVPSEQIRRGDMTEAEFR
RFVEAAKALEACPLYIDDTPALPISQVAARARRLKRTHGLDVLMVDYLQL
LKGSGGSRDNRVQEVSEITQGLKAIAKELNIPVVALSQLSRSVESRDDKR
PQLSDLRESGSIEQDADVVMFVFREEYYREREKPGDHEMEKMAQWQAIME
QVHGKAEVIIGKQRHGPIGSVELSFEGRFTRFGNLVRPWQQGIESY
>RSP_0397 dnaG, DNA primase (DnaG)
MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKS
ASFHVDDRKGFYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAM
PARDPRAAEKADRRSQLAEVMEEAVKFYRLQLRTGAASAARDYLARRRLS
EEGQERFGIGFAPDGRQALFQALTGKGIAPDLLVEAGLCARPEDGGAPYD
RFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETPLFDKGRNLYN
AGPAREAAGKGQPLVVAEGYMDVIALSEAGFRATVAPLGTAITEDQLRLM
WRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD
DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRA
AVQRIADPSIRRHYGDELNRLRMEIFGTSVPRRAFHRGGKREPLAVAPHP
STRASLLATAAGERIEEEMRLGVILATCALHPTLIHEFETALEALELSDP
DHRALHRVLLAAAGMAEADTARGAIRAEAGPALERLLALTHVRICPSVRH
PGDLEMARMCLAEELAKLEARRGARQEIEEAVEDLAGLVDEGLTWRLSQA
AEARHRAERARLDDSSDLGEDRAALSRSLQEMIDRQIWVKKRG
>RSP_1236 dnaQ, putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPERPMP
NEAFEVHGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAAFDMKFLNF
ELGRAGLPRLAPDQALDTLALARQRFPGAPATLDALCRRFGVDNSAREKH
GALLDSEILAEVYLELIGGRQPDFGLASSAGARPGSPEGEWRPRPRPVAL
PPRITEEEAAAHAAFVAKLGDGAIWLKRA
>RSP_0710 dnaX, DNA polymerase III tau and gamma subunits
MSDTPEQGYQVLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMT
GVRGVGKTTTARIIAKGLNCVGPDGTGGPTTEPCGQCEPCRAISEGRHVD
VMEMDAASRTGVGDIREIIDSVHYRAASARYKIYIIDEVHMLSTSAFNAL
LKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRIEPEVMMAHLSR
VAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETTADQVRA
MLGLADRGRVLDLFDLVMKGEAAAALAELSGQYADGADPMAVLRDLAEIT
HWISIIKISPEAAEDPTTPPDERTRGLEMAERLPMRVLTRMWQMLLKAIE
EVSLAPNAMMAAEMAVIRLTHVADLPDPEALIRRLQSEPRPGPGPGGGVQ
AGTQAAPAAPMARMQAAPPRAAHPAPQASGAATAVALAPGTLPCQSFEQM
VELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRL
QGWTGGRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFP
GARIAEIRRLEEQAAAEALPEVEDEWDPFEDN
>RSP_2630 gyrA, DNA gyrase/topoisomerase IV, subunit A
MGRPLSGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILY
AMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGL
KLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYD
GKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIEN
PDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKARVEE
IRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGV
RVVIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFL
SHFLTFREDVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSA
DPAEARERLMTRRWPAADIADYIRLIDDPSHTINEDGTYNLSEIQARAIL
DLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRERIMAIISDELREV
KDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLAEFRS
QRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPL
GGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVR
RNRLSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRF
STTDVRVFSGRDSTGVRGIRLASGDRVVSMSVIRHFEADPAERAAYLKQR
RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEMSAAEDLILTITARGLGKI
SSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLATSGGQSI
RVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG
ETGGDEA
>RSP_0931 ialA, NUDIX hydrolase
MERTIDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEG
EKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPELLGRVWGGKYR
GQRQKWFLYRYLGTDEEVGIGTDHAEFSCWRWIGAEEMVAAIVPFKRAVY
EEVVATFRPHLA
>RSP_2611 ihfA, Histone-like DNA-binding protein (IHF)
MSDKTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKIS
SFGTFTVRDKSARIGRNPKTGDEVPISPRRVLTFRPSHLMKERVAAGGKN
>RSP_0217 int, possible phage-related integrase
MKLSAAGVEKIKPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRHGGVH
RRMSLGAFPVLSLAGARERARQTLAAASAGTDPAAEVKAAKAPKLDGDRD
KIKTLIGQFDKRHLSKLKSGAVVRRELERHVVSAWGERDVHQIGKRDVID
LLDGIADSGRVVTANRVRAYLAKFFGWCVERDILATSPAAGVKPAGKETS
RARVLTDDEIRWFWTACEAEGFPWGPFGKVLLLTGQRLNEVAQMTDSEIR
GDLWHLTADRTKNGRAHDVPLTGAVRAALDEVERVTDEEGRVRFIFTTTG
RTPVSGFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMAR
LGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWARFVLSLV
EGEADNVVRLQHG
>RSP_2413 lig2, putative ATP-dependent DNA Ligase
MKRFAALFDLLDRTTRTSAKVAALADYFRTAPEEDRVWTIGLLSGRRPKR
AVNTTELRSWAAEASGLPVWLAEEVHPIVGDLAETISLLLPEPSQTSDRT
LDGWMRELVSLTGRPAEVRRAAILDAWDRLSTPERFLFNKLITGGFRMGV
SQGLMTRALAQATGVDEAVLAHRLMGDWKPSRIGFETLIGAHDPEADASK
PYPFALASPVEEVAALGDPADWLAEWKWDGIRGQLVNRAGAFALWSRGEE
LVTDRFPDLAPLRDFLPPGLVIDAEVLAWGGEGPLPFAALQKRIGRLTVP
KKILAEAPAHLLAYDLLEENGEDLRAAPLAHRRARLEAVLSALPPGVPIS
PSPLVAFDDWETLGEIRATAREKIAEGLMLKRASSPYFVGRKRGDWWKWK
LDPYTVDAVMLYAQQGAGRRATLFTDFTFGVRDGDDLVPFTKAYSGLTDA
EFRQITDWVRKNTLERFGPVRRVPPELVFELAFEGIQASPRHKSGIALRF
PRMVRWRKDKPAAEIDTLESLRELLAATGGAAP
>RSP_2622 ligA, DNA ligase
MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALK
VRNRAIEEQFPELRRSDSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLA
EVEDWIERIRRYLGHVGDLLFTAEPKIDGLSLSLRYEKGRLVQAATRGDG
ETGENVTENARTIADLPTELDGAPDLLEVRGEVYMSHEDFAALNGRQEAA
GQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAHSEPLAATQHEA
IARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKVD
DLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVAR
LKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAG
DVIPKVADVDLDRRPEGAAPYRFPETCPECGSEAIREPGDSVRRCTGGLI
CPAQQVERLKHFVSRAAFDIEGLGAKQVEALWRDGWIRQPADIFELPNRY
RDGMQRLENREGWGRKSAENLFAAIEARRRIALHRLIFALGIRHVGETTA
TLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGAVLATSLVTAFH
QEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEAK
ARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRL
IGDA
>RSP_2850 mfd, transcription-repair coupling factor (helicase)
MQNGTRIFLGGAPEGYDARLVAKELDRGAPVIHVARDDKRLEAMRTALAV
MAPRAVVLELPAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLT
TLNAATQRIPAREVLRAASFSARVGDRVDEGRLRSYLARMGFSLTDTVTE
PGDYAIRGGIVDIYPPGVAGPVRLDFFGDVLDGARRFDPETQRTVEKLDL
VELAPVSEVMLDEGAFTRFRQNYRIEFGAAGTDDPLYEAVSAGRKHQGME
HWLPFFHARLETLFDYLPEASVMLDDQVTPARISRWEGIADQYDARREAM
TAKGRLDTVYKPAAPDLLYLDEAAWEAAVAGHRVIQLSPLAQSPGPGVLD
AGGRMGRSFAPERQAENISLFGALVDHVRSLREDRQVVIASWSEGARERL
KGLLEEAGLQGTKLAQDIRDVPEARGGTHLMVWALEQGFTAPGLAVISEQ
DVLGDRLISKPKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLR
VPQPPSNKPGPPHDYLHLVYAEDAKLYLPVENIELLSRYGHEEGLLDKLG
GGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSAR
FPYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAA
LAGMQVAVICPTTLLARQHFRSFAERFRGFPMKVHQLSRFVSAREAAETR
SGLADGTVDICIGTHALLAKGVKLKNLGLLIIDEEQHFGVSHKERLKEMR
SEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLAIRTYVSEFDTV
TIREALLRERYRGGQSFFVVPRLSDLPDMEAFLRDHVPEVSYVVAHGQLA
AGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQL
YQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLA
SHDLDLRGAGNLLGEEQSGHIKEVGYELYQQMLEETIQKIRSGELQGLSE
PDEQWAPQINLGVPVLIPEEFVPDLDVRLGLYRRLSGLTTKVELEGFAAE
LIDRFGPLPREVNTLLLVVRIKAMCKRAGISRLETGPRGATVQFHNDKFA
NPAGLVDFIKAQGETARVKDNKIVLARDWKTEGERIKGAFAIARDLAEKV
VKPEKTPAKVARPAG
>RSP_2422 mgpS, putative ATP-dependent helicase, MgpS
MLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPERTQYW
VCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLG
SDVMRGAIAALVPHVTFLRRERFSTLSYAGSKKISRMPPRSAIVGFSVDN
VYAIAELIRRQKGGCAVVMGALSPRTRNAQVALYQNGDVDYLVATDAIGM
GLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQIAGRAGRHTEAGTFGVTG
EASPLDEGVVDAIENHRFAPIQRLHWRNDRLEFGTVERLIASLEEPTSNE
WLSRARESDDLHALKALSEEPEVRARLHSPHEVRLLWDVCRIPDFRSIST
TEHVTLLARIFGFLCEGKVPNDWLAGAIARIDRPSGDIDTLSKRLAYIRT
WTYVAQRRGWVQDESHWREETRAVEDRLSDALHGALTQRFVDRRTSVLMR
RLKQKESLVAEVNDKGEVTVEGEFVGRLEGFRFRQDASNSPDEARTLRQA
AVQALRPEFHLRADRFYNSPDTEMDFTEQGGLMWGEQAVGKLIAGPEPMR
PQVEAFVDEDAGPEVAEKVRRRLQHFIDRKVAAQFEPLLAMSRDETLTGL
ARGFAFRLVESLGLIPREQVAEEVKSLDQEARSALRKHGVRFGQFTIFLP
LLLKPAPTRLRLVLWSLANGLQEFPESPPPGLVTIPHIADVPKMHYTLAG
YHPAGQRAIRIDMLERLADLLRAKDSRAGFEATPDMLSITGMTLEQFAGL
MQGLGYRAEPGERPKVKAAPAAAEAAPAEGEAPAEVPAEEAPAAEAPSAD
AEAAPDAPAEEPAAVEVESFYTFTWAPRRPDRGPRRHDRGQGEGRNRGPR
ATPGDAPAEGAAAEARPPRGDRPERQGHGHGGKPKGKGGKPDRKGADRNQ
PKSFESRPARSDRIDPDNPFAVLAALRDRS
>RSP_1095 mutL, DNA mismatch repair protein
MGSRWRSDSDSAKAGGMTLLSPKIGAARPVIRQLDEAAINRIAAGEVVER
PASAVKELVENALDAGARRIAVDIACGGKALIRVTDDGCGMTADDLPLAL
SRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTITSRVAEAEGAQIA
VSAGRIEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVV
RRLALAEPEVGFTLTDHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGAE
FAENALRIDVAREGLRLQGYAALPTYSRGSGVAQFLFVNGRPVLDRMLLG
ALRAGYMDVLSRDRYPAAVLNLICDPQRVDVNVHPAKAEVRFREAGEVRG
LIVTALRQALAGAGHRASTTVAGETLEAFRPERPAAAGPGPASRIYQMDR
PSVAAVARSFAFQAPEPAMPGLAEAPAARVEAPAAEEAHDRPLGAARAQI
HGNWILAQTESGLVIVDQHAAHERLVYEKLKRQRDETGIARQALLIPEIV
ELSPTDAARLLEAADELASAGLVIEPFGGGAVAVREVPAILGKVEAAPLL
RDILDDLADLGSSDRLQARMDAVLSRMACHGSVRSGRALRAEEMNPLLRE
MEATPLSGQCNHGRPTYVELKLADIERLFGRR
>RSP_1218 mutS, DNA mismatch repair protein MutS
MSDDTVTPMMAQYLEIKAQNPGAILFYRMGDFYEMFFDDAALAAEALDIA
LTKRGKHRGEDIAMCGVPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKK
RGSKSVVRREVVRLVTPGTLTEDTLLEARRHNYLCAFAEIRDEAALAWAD
ISTGELSVTACPLPRLMPELARLAPRELLVADERELDWIEEVGCALTPLS
RASFDSASAEKRLCALFGVGTLESFGNFTRAELSAMGALVDYLDLTQRGK
LPLLRPPVRETVGGTVQIDAATRRNLEITQALAGGRDGSLLSAVDRTVTA
PGARLLERRLSSPTRDLGLIHERLGAVRWLTEEPRLREEMRASLRRVPDM
DRALSRLALDRAGPRDMAAIRAGLAQAQEIAQRMPAEAPALVTRALEALG
GHEALVDLLDQALVAEPPLLARDGGFIAQGFDADLDETRRLRDEGRGVIA
SMQAGFIEVTGIQSLKIKHNNVLGYFIEVTSTHAEKMLSAPLSERFIHRQ
TTAGQVRFTTVELSELETRILNAGNRALDLEKMHFAALRTAILDLAGQIG
RAARSLAELDLISAFADLAVTEDWTEPEIDDSRAFAIEAGRHPVVERALR
RTGTPFVANHCDLSTGETPAVWLITGPNMAGKSTFLRQNALIALLAQAGS
FVPARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRA
LVILDEIGRGTATWDGLSIAWATLEHLHDRNRCRALFATHYHEMTALAGK
LKGVENATVAVKEWEGDVIFLHEVRRGAADRSYGVQVARLAGLPASVIER
ARTVLDALESGERESGGRRQTLIDDLPLFRAAPPPPAPAAPKTSPVEERL
REIQPDDLSPREALKLLYDLRALLT
>RSP_1166 mutT, NTP pyrophosphohydrolase
MKIVLVSAVALIDGDGRVLLAQRPEGKSLAGLWEFPGGKVEPGESPEAAL
IRELKEELGIDTKASCLAPLTFASHAYETFHLLMPLFACRRWEGIPQPRE
GQTLAWVRPQALRDYPMPPADLPLIPILRDWL
>RSP_0772 parE, DNA topoisomerase II/DNA gyrase, subunit B
MLFQSSRKNRAAMANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGT
DERALHHLVAEILDNSMDEAVAGHATRIEVELHADHSVTVRDNGRGIPVD
PHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVVNALSDTL
RVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIFGHL
QFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYL
AEQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCN
TVPTPEGGTHESGFWSAILKGIRAYGELVKNRKADQITRDDMLAGGSALI
SVFIREPQFVGQTKDRLATEEASKLVENAVRDHFDNWLAANTKSAGAILD
FLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSATARDGTELFIVE
GDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQAL
GTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRG
HLYLACPPLYRLTQGAKRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLG
EMDAKDLKDTTMNPATRKLIRVSIDEDEPGETGDLVERLMGKKPELRFQY
IQENARFVEELDV
>RSP_0560 priA, Probable pimosomal protein N'
MTGRFAEGARVGVLTTEPLGRVLDYRAPEGGCDLGDYVVVPLGPRRVMGV
VWGPGEGGFDAAKLRGIERVLDAAPMREEMRLFLARAADYTLTPLPAMLR
LASRAPGLGEPPAVRRVYRASGHEPARLTEPRQRVLDALAAYGGAPVTLA
ELSAEAGVTGSVVKGLVKAGAILEEEAPRDLPYPPLDPGAAPVRLEGDQV
AAAEALVAAVAADSYSTTLLKGVTGSGKTEVYLEAVAECLRRGRQALVLL
PEIALTSEFLARVEARFGARPAEWHSGVTATERRRLWRMVSEGQAQFVAG
ARSALFLPFRDLGLVVVDEEHDTSYKQEEGALYNARDMAVLRASICGCPA
VLASATPSLESWVNAAQGRYARLDLGARFGAAELPEMHAIDLRPEKLPAN
RWISEALARSVEARIARGEQSLLFLNRRGYAPVTICRACGHQIGCDHCDA
RMVEHRFQKRLVCHQCGATKPMPEACPSCGVEGRMAPVGPGVERLAEEVA
ERFPQARVAVLSSDLFGSARAVKEQIAAIAEGGADIIIGTQIVAKGHNFP
LLTLVGVIDADLGLQGSDLRAAERTFQLVRQVAGRAGRSASRRGVALVQT
CQPEHPVIRAILGGDEEAFWRAEAEERRVAGMPPYGRLAGIILSSPDVAQ
VFETGAELARADGPLRRIGAQVFGPAPAPIARVRGRHRVRLLVKAGKGAP
LQAALAEWIAQVKLPANLRLAVDIDPQSFL
>RSP_1171 radC, DNA repair protein
MCATRAFQEASLPLFPGDEDEALAEPLGARLPSYIADHRKRLRARFQEGG
AAAMPDYELLELLLFRSIPRQDVKPLARRLIDRFGDLNRVVTADMARLLD
VEGVGEAVAQDLKILEAVAQRMARARVMNQPVLTSWAALLDYCHTTMAHR
ATEQFRVLYLDRKNVLIADEEQARGTVDHVPVYPREVVKRALELNASALI
LVHNHPSGDPTPSDQDVAMTAQIQEAASTLGIVLHDHLVIGRGREVSFRG
QGYL
>RSP_0452 recA, Recombinase A, DNA recombination protein
MATANLLDLNGRREMDKAKALESALAQIERQFGKGSIMKLGANSPVMEIE
ATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGG
VCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV
NLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCM
VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDNVI
GNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSG
SWYSYGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGLDFSTGEDGK
GDDLVDM
>RSP_1344 recF, RecF protein
MKGEGMRGLAVTSLALSHFRSHRAARMGFDGRPVAFVGSNGAGKTNLLEA
ISLLSPGRGLRRAAADEIARRPEALGWKVAAAVTGLHSGHEIETWAEGGG
ARQVRVDGKAATQVMLGRLLRIVWLVPAMDRLWTEAAEGRRRFLDRVAMS
FAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHGALEGRMAEAARAIRAH
RDEAVARLMAAQGAAETAFPRAMLSVASDDPEDLGAAWAEGRRRDMAAGR
TLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANARALAEDLGA
APVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQ
RIEVTEAQGLSQTRDIGP
>RSP_2623N recG, Haem peroxidase
MSRPEILFPLFADLETLEGVGPKSAKAFAGLGVTRPKDLLFLLPHSAVDR
SRRSSIRDVLPPVTATVEVTVGAHYPSRRKGGPYRIAVRDAEAEFTLVFF
HARGDYLMKLLPPGEQRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPAC
EPVYPLTAGLTQKLVAKAASAALLRLPELAEWIDPGLKAREGWPDWAAAV
RAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLTLARASRRRGRGVASV
GTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGDVGAGK
TLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLT
GRDKGAERAAKLAALAAGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRF
GVAQRMELGAKGAAADVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRT
PVKTALVSCERIDEVVASLAHAVAEGRQAYWVCPLVEDSEAVDYASAEAR
FQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAGETRVLVATTVIEVGV
NVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPLAESGQ
RRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSAL
MEVAQSDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG
>RSP_2118 recN, DNA repair protein RecN
MLRSLDIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG
RAELVRAGADKGEVTAVFDLPPGHAARAVLDEAGIEAEDELILRRVNFAD
GRKTAWVNDRRVSGEVLRGLSDRLVELHGQHDDRGLLNPRGHRQMLDTFA
GLDLSACRRAWTALGTARRTLLAAEEALAAVRAEEDFLRHAVAELDKLDP
QPGEEALLDTRRREMQGAEKIRDDIARAHRALSAEGAETLLVDALRWLET
ASDRAGNRLEAPLAALSRALLELGEAQDGVEACLADLDFDPRDLEALEER
LFAIRALARKHSVLPDELGTFAEELRGRLAALDGGTKQIDALRRALAEAE
AAWEAEAAILSEARRGAAGRLDAAMAAELAPLKMERAVFETQVTEADPGP
EGRDAVAFTVATNPGAPAGPLNRIASGGELSRFLLALKVCLTGDSPGLTL
IFDEIDRGVGGATADAVGRRLKALAEGAQVLVVTHSPQVAALGAHHWRVE
KRVAHGMTTSTVSPLGAGDRIEEIARMLAGDTITDAAREAARALLD
>RSP_1359 recQ, DEAD/DEAH box helicase
MPTPRELLHSIFGFSDFRPGQEEIVEAVRQGQNTLAIMPTGGGKSLCYQL
PALSREGVTLVVSPLIALMRDQVRSLREAGVEAGALTSGNTEAETDEVFR
ALDEGRIKLLYMAPERLASAGAFALLRRVGVGLIAVDEAHCVSQWGHDFR
PDYLRIGELRRALDVPLAAFTATADAETQEEIVARLFDGVAPATFLRGFD
RPNIHLAFAVKASPRQQILAFAAARKGRSGIVYCATRAKTETLAQALREA
GHSACHYHGGMEAHDRRAVEIRFQQEDGLIVVATVAFGMGIDKPDIRWVA
HADLPKSIEGYYQEIGRAGRDGAPAETLTLYGPDDIRLRRSQIDEGLAPP
DRKAADHARLNALLGLAEATACRRQVLLGYFGESSEPCGTCDLCDRPAEL
FDATEAVRKALSAILRTGEWFGTGHLIDILTGTATQKVRDRGHDGLPTFS
VGRDLSRPAWEAVFRQMMGRDLVRPDPERHGALKMTEAARPILRGEEQIT
LRRDTVKSAAARPQARALISEEDAPLLSALKAKRRALAEAAGVPAYVIFT
DRTLIEMAERRPQTLDEMAGITGVGAKKLESYGATFLAVVTGEAEAAMHP
QRRRLAGRGAAELFDRLAEAQVALMRGEDGTGKPLSLPQSTLRRIAEARP
TTLADLDRVGDLGAQKIERFGEAFLDVLREA
>RSP_0712 recR, recombination protein RecR
MAEAPGDIERLIELMARLPGLGPRSARRAVLLMLKKRGAVMAPLAQAMAE
VATSARDCVRCGNITNADLCGICRDERRATGELCVVEDVADLWALERAGA
FRGRYHVLGGVLSALDSVGPEELRIPRLAERVREEGISEVILALNATVDG
QTTAHYIADVLEPSGVQVTSLAQGVPIGGELDYLDDGTIGAALRARRRF
>RSP_2536 rhlE, ATP-dependent helicase, DEAD-box
MLMTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQT
GTGKTASFTLPMITILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAK
HSKLSKALLIGGVSFTEQDKLIDRGVDVLIATPGRLLDHFERGKLLLTGV
QIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSATMAPEIERITNT
FLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIRAE
GEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGF
RDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGR
KGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSLEDRPDRPERDNA
RGERSERPARGRRGRDRDRREEPRVEAVEAPAAAVPEVREVREERPPRRE
ERRDERREGGNNRRERDRDRREERVVGMGDHVPDFLLRSFRIPSLTASDE
EEPVPEAAEEMLAGDGEA
>RSP_0819 rhlE2, DEAD/DEAH box helicase
MPAHRKRPMADFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDL
MGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPRTIRALILAPTRELVTQIA
TNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATPGRLIDLLDR
NAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPK
LIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQK
HPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR
DGSLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAE
GSAVAFVAPAEMEEFRAVEKLLKQPIPVIGGAPWAADIVAAAPRPGQKPR
QGGRPKTGAKPQGKPQAKAQPKPQGAAKAHPRAGRPAGAPGGHAAPKRAA
RGPRRGDAARG
>RSP_0867 rnhA, ribonuclease H
MARTRPAARPHRLVRRRGFGYPRPMPDLYAYTDGACSGNPGPGGWGVLML
AREGEAVVKERTLQGGEVLTTNNRMELMAAISALEALTRPTEITIVTDSA
YVKNGVTTWIHGWKRNGWKTADKKPVKNAELWERLDAAQQRHKVVWRWIK
GHSGHAENERADELARAGMAPFKTR
>RSP_1470 rnhB, ribonuclease HII
MEITCPDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIP
EGLNDSKKLTAPRREMLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAM
GRALAGLPSRPDFALIDGHMVPKGLGHRCRAIVKGDALCLSIAAASIVAK
VARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALLNLGPTPHHRRSFKPV
HNILYQEASISP
>RSP_0555 ruvA, Holliday junction DNA helicase ruvA
MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTE
LVVREDLLQLFGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTAR
AITLGDARSIQAAPGIGPKIAQRVVLELKSKAPALMAMGGGTAALAPSEP
PEPEPGTSSGSRRKTRAPEPPRPSHTADALSALANLGYQPTDAAQAVAQA
AGESPDADTAALIRAALKLLAPKS
>RSP_0553 ruvB, Holiday junction DNA helicase RuvB
MTSSDPTLRPERLPEDMDRALRPQSLEEFVGQAEARANLRVFIESARMRG
EAMDHTLFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILT
NLEPRDVLFIDEIHRLSPVVEEVLYPALEDFALDLVIGEGPAARTVRIDL
QPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVARGARMMGV
DSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALT
RLGVDHLGLDLGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIE
PYLLQQGLIQRTPRGRMLAHKAWRHMGIEPPKGPGQSDLFG
>RSP_0556 ruvC, Holliday junction nuclease RuvC
MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSGDLAHRLLSLHGQ
LTDVLARFQPDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGE
YAPNAVKKTVVGVGHAAKEQIQHMVRLHLPGVHLAGPDAADALAVAICHA
HHVQSSGRLEAALARAAR
>RSP_2178 topA, DNA topoisomerase I
MAVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFAM
TWEVAADSKKHVRAIADALKTDDTLILATDPDREGEAISWHLQEALASSL
KKGKTVRRVTFNAITKSAVTEAMKAPREVDTALVEAYLARRALDYLVGFT
LSPVLWRKLPGAKSAGRVQSVCLRLIVEREMEIEAFRAREFWTVSAVLAT
PRGQEFEARLTVLGGKKLEKFDLATSEAAELAVQAVTSRPLKVASVEAKP
ASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYEAGHITYMRTDGI
DMAPEAVMAARDEIKRRFGANYVPDSPRMYKNKAKNAQEAHECIRPTDMS
ASPEKLGLTDTDQRKLYELIWKRTLASQMAAARLERTTVEIASPDGQVGL
RATGQVVLFDGFLKVYEEGRDDRSDGDEDDEGRLPQIMANEAVEKKSITP
EQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKNR
LIPEDKGRLVTAFLANFFRKYVEYDFTADLEGELDDVSAGERNYKEVLAR
FWRDFSAAVAETADLRIGEVLDKLDEFLAPHLYPPRPDGSDPRICPTCGS
GRLHLKTARGGGAFIGCGNYPDCRYTRPISVTGDEENAISPDGKLLGHDE
DGAPISLRSGRFGPYVQKGEVTAEVPKPPRASLPKGWAPDTVDLDRALML
LNLPRLVGSHPEDGQPVEAAIGRYGPYVKHGSTYANLPDVEEVFTIGMNR
AVEVLAQKAAGRRGASAPAQPIKELGEHPDGGLLAVMPGRYGPYVKWGKV
NATIPKGIEPEAITLEEALALVAEKAGKAPKKKAPARKAKAEEGAPKKAA
PKKAAAKTTKTAAKKPAAAKSTAKKKAAPDTDAA
>RSP_2146 trgB, Tellurite resistance protein
MRVFLCGPLASDGLRQRVLGSAPDGVPARLADHALGAAGATVSPMPAPGA
SVAGLVMELGAEAGARLLHYQTATGHEARTLAVAGAPALVFFAPPEGLEP
WDEAAWGALWGPIVVATAGDVMALWPEVPAERIARRYRLMLVQGASRVRA
AADPGPARRRHAAQPGDVRIVRRSQPYANFFAVEEYDLSFRSFGGGMSPT
LNRAVFISGDAVTVVPYDPVRDRVLLIEQFRPGPLGRGDAQPWLLEPIAG
RVDPGETPEAAARREAVEEAGLDLGALLPVASYYPTPAAKAEYLYSYVAL
AQLDDGIEGIFGMEGEGEDIRGHLMSFDEMMALIRSGEICNGPLLLTALW
LDRERPRLRGE
>RSP_2966 uvrA, ABC excinuclease subunit A
MAEQKFISVRGAREHNLKGIDVDIPRDQLVVITGLSGSGKSSLAFDTIYA
EGQRRYVESLSAYARQFLDMMGKPDVDHISGLSPAISIEQKTTSKNPRST
VGTVTEIYDYMRLLWARVGTPYSPATGLPIAAQQVQDMVDAVMAMPEGAR
GYLLAPIVRDRKGEYKKEFIELRKQGFQRVKVNGTFHELEEPPTLDKKFR
HDIDVVVDRIVVREGIETRLADSFRTALNLADGIAIFESAPAEGEPVRTT
FSEKFACPVSGFTIPEIEPRLFSFNAPFGACPECDGLGMELFFDERLVVP
DQGLTLKQGAIAPWAKSKSPYYTQTIEALARHYGFDPKKKWKDLPFNVQS
VFLRGSGEEEITFRYDEGGRIYQVSRSFEGVIPNMERRYRETDSAWVREE
FERYQNNRPCHVCGGYRLKPEALAVKIGGLHIGQVVQMSIKEAFAWIETV
PGHLTAQKNEIARAILKEIRERLGFLVNVGLDYLSMSRAAGTLSGGESQR
IRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRDQGNSVLVV
EHDEDAIREADYVFDVGPGAGVHGGQVVAHGTPAEIAADPASLTGQYLSG
TREISVPAERRKGNGKALTVVKASGNNLHDVTVDFPLGKFVCVTGVSGGG
KSTLTIETLYKTAAMRLNGARETPAPCETIKGFEQLDKVIDIDQRPIGRT
PRSNPATYTGAFTPIRDWFAGLPESKARGYQPGRFSFNVKGGRCEACQGD
GVIKIEMHFLPDVYVTCETCKGHRYNRETLEIRFKGKSIADVLEMTVEDA
QEFFQAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELSR
RATGRTLYILDEPTTGLHFEDVKKLLEVLHELVEQGNTVVVIEHNLDVVK
TADWIIDIGPEGGDGGGKIVAEGTPEEVAKVEASHTGRYLRDMLKPRRLA
AE
>RSP_2083 uvrB, Putative Excinuclease subunit B
MPHNNTNLPMHRPEVLTRPKLEGGRRFEMKTPFQPAGDQPTAIAELAAGV
QGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILAPNKTLAAQLYGEFK
GFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRHSATR
ALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVA
QQYRRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFD
PLTGAKTDSFKQIRIYANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEG
KLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEF
IPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLK
FEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVEIRPV
EMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHS
DIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGF
LRSETSLIQTIGRAARNADGRVIMYADRITGSMERALRETERRREKQIAY
NIEHGITPQTVRKNVEDVLAGLWQGDTDQSRVTAKVDKPMVGANLAAHLD
GLRVSMRKAAENLEFEEAARLRDEIKRLEAVELAISDDPLARQTAVEEAA
EAAVKSSGRSTAGRAGQRGGNKRRRGH
>RSP_1074 uvrC, Excinuclease ABC, C subunit
MQDNETDGRDVPTGHAVIQGYLKTLDGSPGVYRMLDAQSQVLYVGKARNL
RARVSNYARPSGHSGRIARMIRETASMMFLTTRTETEALLLEQNLIKQLK
PRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYFGPFASAGAV
NRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYA
ELIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQV
QSSQGINPRGVAEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGA
GAEEPEILEAFLAQFYDDKEPPRMILLSHPVDNPDLVGQLLSERAGRKVT
LGVPQRGEKAELVENAARNARESLARRMAESATQNRLLAGLAEAFELDAA
PKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRGAAGAQGDDF
GMMKEVLTRRFERLLKEDPERKTDAWPDLLLIDGGAGQVSAVQEILQELG
VDDVPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAH
RWAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVP
DLCAVEGISETMAQSIHDYFHGS
>RSP_2815 xerD, Probable integrase/recombinase XerD
MEAAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFL
TATRDTVEAYLTFCEAQGLSSATRARRLSSIRQLYRFGHEEGWRADNPAI
RISGPGRSKRLPKTLEIEEVDRLLEAARDKGRRAEDQIRNRCLLELLYAT
GMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADWLRA
RDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPA
KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKE
LVLKHHPLARE
>RSP_1845 xseA, Exonuclease VII, large subunit
MSDLFEDPAPSRNTPEFTVSELSGAVKRVIEGEFGLVRVRGEIGRVSRPA
SGHLYFDLKDDRAVMAAICWKGQAGRLSVRPEEGMEVVATGRMTTFPGQS
KYQIIVEDMAPAGAGALMAMLEKRRAALAAEGLFDAARKHPLPFLPRVIG
VVTSPSGAVIRDILHRLRDRFPSHVLIWPVAVQGEKCAPEVAAAIRGFNA
LPEGGPIPRPDLLIVARGGGSLEDLWGFNEEIVVRAAAESRIPLISAVGH
ETDTTLIDHAADRRAPTPTAAAEMAVPVRLELLAGLDGQVARLSRCAAET
IRRRDQRLRDLARALPRLESLVAGPSQRFDLWSGRLSGALGQSVAARRAR
LEPLGAHLRPRLLADLVARQKDRLGDRTRSLETCLGRRAERARDRFDALS
ARLAPAFARLIAETERATRRDAATLGTLAARLDAAPEARLARLSDRLEAL
DRLRQTLGYRETLKRGYAVVRADGAVLTTKAEAGAAAMLEIEFQDGRLSV
GRGKTRKPKEEPPAQGSLL
>RSP_1136 xseB, exonuclease VII small subunit
MTEKAVAEMTFEEAMAALEAVVTALEKGDVPLEDSIRLYERGSALKAHCA
QKLKDAEDKVELIRAAEGRATAAVPAEGL
>RSP_2657 xthA, Exodeoxyribonuclease III
MKIATFNINGVKARLEALLAWLEAAEPDVVLLQEIKSVDEGFPRAAFEDK
GWHLETHGQKGFNGVAILSRLPLEDVVRGLPGDPEDVQARWIEATVVGER
AVRVCGLYLPNGNPAPGPKYDYKLGWMERMKARAAELLATEEPVVLAGDY
NVIPQAEDAARPEVWVTDALFLPESRAAFRRIVNLGYTEAFRARTFGPGH
YSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRSGEKPSDH
VPVWVELAA
>RSP_0848 xthA1, Exodeoxyribonuclease III
MTFTLATWNINSVRLREALVSRLLTEEMPDILCLQECKSPVEKMPLEAFR
ALGYHWCVARGQKSYNGVAILSKLPLVDAGDHDFADLGHARHVSAALENG
VTIHNCYVPAGGDIPDREQNVKFGQKLDYLTRMRDWCRADTPKKAILVGD
LNIAPREDDVWNHKSLLKIVSHTPIEVDHLNALMEAGAWIDVTRKDLPEG
RLYSWWSYRSPDWEAADKGRRLDHIWATPDIVNAAHGSRILKAARGWLQP
SDHAPVFATFDL
>RSP_2260 ydjG, hypothetical protein
MQDVRHWPCESCGADLRFAPGQTRLVCDHCGHVQEIPATAPTDRRGMGEL
DLHAALADRLPASASEQVRTTPCPSCGALVEFEGATHATQCPFCATPVVA
GTGETRLLKPQAVIPFRLTEREARQAMTDWLGRLWFAPNGLVQYARKGRA
LSGLYVPYWTFDAATRSRYTGQRGDAYYTTRTVTVEVNGRPQRRTERVRQ
IRWTPVSGRVAREFDDVLVLASQSLPRHYTEALEPWDLSALEPYRADWLA
GFTAEGYTVGLPEGWSRAQEIMARTIRGDVARDIGGDEQRVGQVETAYDR
ETFKHVLLPVWMAAYRYGGKSYRFVVNGQTGRVQGERPWSAWKIAFAVLL
GLIAAGIAAYISQAR