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# Thiomicrospira crunogena XCL-2, XCL-2

>Tcr_1410 Phage integrase
MINKLSDVQIRKAVHPSTKSLSDGKGLSIEIMPKAKRFKFRYQRPVNKKI
NNLVLGYYPSMSLKAAREIAQQYRELLKKGIDPKYQTSSEKVDFDHIIQL
YLKKGKADWSEKHFNTTKGRYENFLKNPFGNRDAAQITSFDIYNLLESVA
QSGSYGTAEKLSYIISGAYSQAAILGMVKFNPAAGVMKQVTKTKKTQQMP
HFNLTRKGESERLGRFLNDIKALNKTNIAVKTALLLSPLLFMRSGSLASL
KLESYDKDNKWLLINAEDMKKDHSDFIVPLSTQAINLLETLIAATKPKIY
VFESRASKLGHIRIEAINKAKSRSGWRFDDVTIHGLRHTATTYLTEIGFD
YEVTEMQLHHKLVGVRGIYNKAMHLDKRREMMQKWADYLDNLRNGI
>Tcr_0440 transcriptional regulator, Fis family
MTLLSDKNPASQALSTHVTMTLKNYFETLEGEVPSDVYQMVISQVERPLI
EFVLNETAFNQSRSAEILGINRNTLRKKMQLYKITPA
>Tcr_1749 DNA polymerase III chi subunit, HolC
MTATSSLEKDVIFYVLGTDTAQQREAFMAKLVNKIHREKRRCDIRFASED
EMTRFDLSLWQYQPEAFIPHSVQQTVQAPIQLWADQIATPCQDVLLNVHP
DFPQNFQLYNRTIEVLDQTEHLIQMGRERWKAYKKEGLEPTVHKIK
>Tcr_1642 Integrase, catalytic region
MYRSSFKAWRSRPKRIKPKLVKELAMVRRIHAESNGSAGARTIALVATER
AIPLSRYRAQRLMGKLGLVSCQLPKHSYKKATQEHICIPNSLDRQFDPAR
PNQVWVGDVTYIWAGNRWSYLAVVLDLYARKVIGWAMSYSPDSELTAKAL
TMAFELRGKPDGLLFHSDQGSHYTSTKYRQLLWRYQIKQSLSRRGNCWDN
SPMERFFRSLKTEWVPTLGYKSLAEARNHVTSYIIGYYSQVRPHAFNDGK
TPNKAEEIYWANCSKSVAKKT
>Tcr_1673 Competence protein ComEA helix-hairpin-helix region
MIKLVALMFGLFLSVSVFASPVNVNKASAKEIASSLNGVGQVKAEAIVTY
RKAHGDFKTVESLGQVKGIGDKTIAKNKKDILLSDKK
>Tcr_0218 Exonuclease
MSNAQLIFIDKRNQPIKEYIVAVAASDGLNIKGIQIIASPAKGEKALISA
NVKIPPLEDLQFDTSKIVNAILDELIVGEETLSVKELIERASDDEDVRKS
LSKSVKKLKTKLTDLIKEFTGSEVINLIQERRNDANFKLKEHDQELKGNK
VVCIDIEATDICTKDSADIIQVSICDLEGNELLNQLINPGYDIPENDKHN
ICTEMVQDAPFLADAWDEIHRILAEADTVLAYSTESDFAYLEKSAEKKML
TFELDYSKWLDVAELSKDLVGALRWQSEKMYWFYKTPKLTDAYAKIMGKP
FPGDAHDALADAQATAELFNAMLMRGRKSQVKIKKPEPVKDEISNNPFAQ
AFAAAKRKSK
>Tcr_1269 Helicase c2
MSLKIQIQSILGKDGQLSQNTSDYEVRHAQVEMAETVAEVIDEDQTLLAE
AGTGTGKTFAYLIPALLSGKKVIVSTATKTLQDQLLRKDIPLLMDICNAK
GTAKILKGRENYICPQRLEIAETAEQNTKEVWRKLSLIHDWQEKTLIGDK
SELTTLDENDPIWSRVCARMEFCQANECTGDNGCFYPGVKQQATDAEILI
VNHHLFCADLALREQGFGEILPEADIYIFDEAHQLPDIAAQFLGFSVSRF
QLDELVRDVRLAYKKESPETIELSDQAKAVEDKIRIFNEALGKWEKRWTW
ESFSEAKTGHKTLEHLRNQLSLLAEVIKPITDRGKLLSALYKRTQEFEKQ
IETWLKASSENQIRWVESSQARFKLNLTPLSVAAPFSRQRDALGGAWIFT
SATLSVNQSFDYFAHRLGLESARTHQWESPFDYEQQAVIYHPIGLPDPKH
PDYIKICLRAAWPLLLASQGRAFLLFTSHKALQEAKVILSQHWEGTLMVQ
GDGPKTTLLARFKETENAILLGTSSFWEGVDVKGDALKLVLIDRIPFIPP
DDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGRLIRDSSDKGVLM
LCDPRLTQKPYGKIITNSFPSFKWVYDVNEAKEKLL
>Tcr_0364 DNA topoisomerase IV, B subunit
MSENYNASEIEVLTGLDPVRKRPGMYTDTTRPNHLAQEVIDNSVDEAIAG
HASKIIVTHFADGSIAVEDDGRGMPVDIHPEQGMPGVEVILTKLHAGGKF
SNKAYQFSGGLHGVGISVVNALSKRVEIQIKRDGKVHQIAFEQGLVVEPL
EVIGKVGKKNTGTTLRFWPDARFFDTPKYALTKLKHLLRAKAVLSPGLHV
TFIDEVSNETSEWQYEDGLRDYLNQALDGVDRVPVEGFVGETNGENEGVA
WAIAWLAEPADTVLESYVNLIPTPLGGTHVNGLRAGATDAIREFCEFRNL
LPRGVKVTPEDVWQNVAFVLSAKVREPQFAGQTKERLSSRECVPFISGVV
KDSLSLWLNQHTDVAEKIAEIVINNAHNRNKKAKKITRKKITSGPALPGK
LADCTESDLNRTELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEV
DSSQVLASSEIHDISVAIGVDPGSDDLSGLRYGKICILADADSDGAHIAT
LICALFVKHFPKLVENGHVYVAMPPLYRIDVGKQLFYALDESERAGVLDR
IESEKMPGKVQVTRFKGLGEMNPKQLRETTMMPETRRLIQLGLDIESADP
MMDKLLAKKRSGDRKIWLEEKGDLAEVV
>Tcr_0930 DNA polymerase III, epsilon subunit
MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPERDVP
IDAIEVHGITNEFLVGKPIFADVVDDFMEYVAGAELIIHNAPFDVGFINQ
ELSQLPNNKWGKIEDHCTITDSLKMARKAYPGQRNSLDALCKRFLIDNSN
RTLHGALLDSEILADVYLAMTGGQTALILADEEGSSSDASRVNLNTQRAP
LKVLKASAEELAAHNGKLQQISEKCGDTITW
>Tcr_0001 chromosomal replication initiator protein DnaA
MTTTLWPQVLKQLEAVLNDQQFLTWIRPLEAVEEDNTLRLIAPSGFILDW
VNKKLLSQIKQAVYLVAPVNTPEVTLEVGEYAIESFNEPENTSVPQPLRE
TKAEREAAEKAASSTSKKKSDSPPKKTIKHNLNTNFTFDTFVEGKANQLA
AAAARQVADNPGGSYNPFFIYGGVGLGKTHLMHAIGNELMRRDPNARVVY
LHSERFVADMVNALRHNKIDEFKRFYRSLDALLIDDIQFFAKKEQSQEEF
FHTFNTLLEGNKQVILTSDRFPKEVDGLEDRLKSRFGWGLTIAVEPPEFE
MRVAILMKKAAEFGFLLPDEVAFFIAKRLRGNVRDLEGALKRVGAFAQFT
QQLVTVDLAKDALKDLLALQQKMVTLENIQKTVADYYKIRVADLLSKRRT
RNIARPRQMSMAISKELTSHSLPEIGDAFGGRDHTTVLHAVRKINELKET
DHRIEEDFNSLIRIITN
>Tcr_0120 A/G-specific adenine glycosylase
MSDLEEFSQTLLEWFDRSGRHDLPWQQNKTPYRVWVSEIMLQQTQVQTVI
PYYERFMKAFPSVEALAQASQEEVLSHWSGLGYYARGRNLLKAAQIVVDE
LQGKFPQDLEGMMALPGIGRSTAGAVLSIASQQRHPILDGNVKRVLCRYD
AVESWSGEKQTEAMLWQRANELTPEQRFDDYTQAIMDLGATLCTRSKPKC
EACPVQKNCQAWRLDRVSDFPYPKPKKAKPTRETAMMIFLNENRQLFLQQ
RPQKGIWGGLWSLPEMPLDPLETLIKSKVETLCDERLNLIKWPLFKHTFS
HYHLMIHPFFLDKVSSIKMEGEWFTVSEALTKGLPAPIRKLINQLENSND
>Tcr_2075 Transposase IS3/IS911
MTKTRPTFSAEFKLESAQLVVDQGYTLNEAAKAMGVGLSTMGKWVKQLKD
ERRGIAPKGSALTPEQIEIQQLKKRIKYLEEEKDILKKATALLMSDSFNS
SR
>Tcr_2009 DEAD/DEAH box helicase-like
MNTEIKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQ
TGTGKTAAFALPILSKIDLKQKDPQVLVLAPTRELAIQVAEAFQTFSRGV
KGLHVLPIYGGSEYGTQIRALKRGVHVVVGTPGRVMDHIKKGTLKLDTLK
VMILDEADEMLRMGFIDDVEWILKHTPDTRQIALFSATMPKEVHRIANTY
LQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEAETFDGIIIF
VRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIA
TDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAP
RERRLLRSIEASTKKKITQMELPTAQEINDSRITRFKDKIVDAAQGTDLD
FYQKMVESIESDNNIPAIEIAAGLAKLLQGDVPFFLDEKPVKHKEFKERD
GGRERNPRRAKGERSERGDRGNRSRRQTPPNEGMARFRVEVGRQHGVKPG
NIIGCIANEAGLDGEFIQKLTIEDNYSMVDLPSDMPKNVFNELKGAWVCG
QQLKINPVKDVSQSAKRRLKPRKK
>Tcr_1145 excinuclease ABC, C subunit
MPNQFETQFDIDAFLKHLTERPGVYLMYDASGQIIYVGKAKNLKRRVSSY
FKKRHEEIKTETLVSQVASIEVTVTDTESEALILENTLIKRHKPRYNILF
RDDKSYPYIFVSTGKKFPSLSYHRGAKRKVGRYFGPFPNASAVHQTLHAL
QKIFPVRQCTESVFNHRSRPCLQYQIKRCSGPCVEGLVTEAEYNEDVQHT
IAFLEGKSFDVIESLGHKMQQASDEFEFEKAALYRDKISALRAIQSQHLI
NQPGSKDTDVVALAEEANQVCVSIMMYRGGNLWGSQNYFPKIGGQSINPG
EIISAFITQHYIDLPIPQMILVSDVLEDKSSLETWLSEQKKAKVSIRKAV
SQTHKGLMKLALTNAQSGLKQQLTQKASQAERVKSLQDVLALASPPNHME
CFDISHTQGNQTVASCVVFNEGVPNTSAYRKFNIEGIQPGDDYAAMHQAI
TRRYSRVKKEGLPLPDLIVIDGGKGQLNKAIDVFKTLELDNLPLVSVAKG
EGRKAGLEILYTPFNEEGIDLEADDIALHLLNYIRDEAHRFAITSHRSRR
QKAQTHSRLEDIPGVGAKTRHKLLTHFGGLTEVKNAAVSELQKVPGISAR
IAQTIYDFFHGEI
>Tcr_0328 Phage integrase
MGSGERYCLLVEAGSGVPLFYPNLFITTQVRNASLSFSSMESALSSISVL
LKFCDEHQIDLVERLRSGTFLKLNEVDALADYCQFNRSSKVAANKVTSLT
KIRKPRVANETVYRRLSVIAKYLEWLGSLLGVGGVENQKKLSALVKKVRS
RRPVKKGRNQSLIDKGLTDEQVDLLFEVFRPESDLNPFEGESTKVRNRLM
FLMLHYLGIRMGELLSIKVKDIDFSNNQIVIARRADEKSDPRVDQPLVKT
MDRRIPLKESLAAEIHNYVVNYRRKELPARKHEYLFVVHKPGPTSGQPVS
KATYNKVMTTVKALSPKLIDFTGHALRHKWNERFSQLMDSMDEPHDEVKQ
EQLRSWLMGWKQGSGTAAHYNQRYIRSKAESVALILQNELVTKG
>Tcr_0002 DNA polymerase III, beta subunit
MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLE
IETRASTELESSDGDFSVTLPAVKLISIVRSLPDGLTILLEFDEMRCQLS
AGRSRFKLSTLPADDFPTIDLTQTELSFSMAQHQLKQIIHNTAFAMASQD
VRFYLNGMLFDISNQTLRVVATDGHRLSTCSTLLETEGLTATQAILPRKG
VLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTCKLVDGRFPDFNRVLP
QHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHAQNSDQ
DESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMHEEAVTLYMKDANSSCMV
DTQNETCHCQHVIMPMRL
>Tcr_1859 Integrase, catalytic region
MYRSSFKAWRSRPKRIKPKLVKELAMVRRIHAESNGSAGARTIALVATER
AIPLSRYRAQRLMGKLGLVSCQLPKHSYKKATQEHICIPNSLDRQFDPAR
PNQVWVGDVTYIWAGNRWSYLAVVLDLYARKVIGWAMSYSPDSELTAKAL
TMAFELRGKPDGLLFHSDQGSHYTSTKYRQLLWRYQIKQSLSRRGNCWDN
SPMERFFRSLKTEWVPTLGYKSLAEARNHVTSYIIGYYSQVRPHAFNDGK
TPNKAEEIYWANCSKSVAKKT
>Tcr_0194 DNA processing protein DprA, putative
MSDLDNLHDWLLLHFARVNAKQLPQITSYFGSISQAMAASQASWQSSQLL
KPKQLERLFDPDNDVLVSEAVAWSQQPEQTILTLEDAVYPELLKRISDPP
ILLYVRGDVSLLSEPQLAIVGSRNASKQGRLTAMDFAQYLASVGLTITSG
LASGIDKAAHEGALQAGASNSKTAQGTTLAVVATGLDRVYPAANRELARQ
IADRGALVSEYPLGTKPMAHFFPQRNRIISGLSVGTLVVEAALKSGSLIT
ARTALEQDREVFAVPGSINNPQAKGCHQLIRQGAKLVESGQDILEELSVI
LQLSLNEPSKGQGSSPTKKDKEAPGDLLRYIEFEPIGLDELVVLSKLPVS
DIQSQLMMLELEGRIEALSAGRWRRLN
>Tcr_1987 primosomal protein N' (replication factor Y)
MFVKVAVPGPFLSPLDYRIQAEKADHRIETLALDLEPEEQTESKKSFLPV
VGGRVKVPFRNKSLIGIVMALSDDATVATQKLKALEDVIDEMPIFSEQEM
ALLSWASHYYHEPIGNVVQTALPKRLREGEAVDVAGVSAWQLTEAGREAD
EQIPSRATQQKALWQLLQQQDEALTAEVLNRSLNQWRLPMKRFQEKGWVA
ETEKSCLHAMPVREKTARPGHILNAEQQAAVDAVLATSGFDAFLVEGVTG
SGKTEVYLGMIESVIAQGKQVLVLVPEIGLTPQTVKRFEAYLQAPVAVMH
SGLNDKERHCAWSLVKTHQVNVLLGTRSAIFTPFADLGLCIMDEEHDLSF
KQQDGFRYSARDCLVRRAQLENVPVVLGSATPSLETLHNALSGRYQHLHL
KQRAGQAKMPEVQLLDVRGQAEEEGISQPLRQEVETHLKAGGQVLLFLNR
RGFAPVLMCHDCGWQAACPSCDANMTFHQQVNELRCHHCGYQAKAPLDCP
NCGSASFAKIGQGTERLETVVQQWFPDYKVLRVDRDTTRNKGQMMALTEQ
ASQGRADILIGTQMLAKGHHFPKVTLVGLLDIDQGLFSCDFRAAERMAQL
VVQVSGRAGRGERPGQVVIQTHHPEHPLLKVLVARGYEAFAKEALKEREQ
ADLPPYQYQVLLRAEAVDANAGWTFLNDVKSALNFAKMSMLRSYLSVNDS
DDIKAEMLQGLEVFGPVSAPMLRRQGRYRYQLLLQGAHRGFLHQWLAQVE
TQLYTSNQAKKVRWSLDVDPQEMS
>Tcr_0928 Ribonuclease H
MQEVELFTDGGCRGNPGPGGWGALLRFGGVEKELKGAELDTTNNRMELTA
AIEGLKALKRPCKVTLTTDSQYVKNGITQWMTNWKKNNWKTAAKKPVKNK
DLWQALDEALQPHDVTWAWVKGHSGHDENERVDELANQAMDELTG
>Tcr_1272 Ribonuclease H
MTDPQIHLDLMPHGIADEFIVGVDEVGRGPLVGDVVAAAVILPKGCELLL
KDSKKLSESKRELIAHQIQQEAIDFCIATASPDEIDSLNILHATMLAMKR
AVEGLNNPIKKVLVDGNRCPNVPYECEAIVKGDGKVPVISAASILAKVHR
DQQMQVLHEAYPEYGFDAHKGYPTKLHLEKLSQHGLIPGYRRSFKPVKNI
LQLLEKI
>Tcr_0141 hypothetical protein
MKPLYTLILSLFLLGIAACSNTSDPGPLAGKWQLTGQVDMTISFRPGETE
ANGVIEKVHYKIEGKDVLVTYLEGMAKGMTMRYTLIDDQTAITNLGTLKK
RPPNENSAPLSD
>Tcr_1641 Transposase IS3/IS911
MTKTRPTFSAEFKLESAQLVVDQGYTLNEAAKAMGVGLSTMGKWVKQLKD
ERRGIAPKGSALTPEQIEIQQLKKRIKYLEEEKDILKKATALLMSDSFNS
SR
>Tcr_0719 DNA-directed DNA polymerase
MILPWQTQQWQQWIQQSGHLGQGYLLSGAEGIGLSEFAMSMAEGLLCQTN
ALQGCQNCVHCHQFAQATHPDFFQLTVLEDKKEISIDQIRALTDKIYTTS
HQGGYKVALIEQVELLNVSAFNALLKTLEEPPAKTILILTSYQTSLLPAT
IISRCRKIAFASPPREEALAWLQQALPQADMPLLKKALKINWGGPLKAKT
WIDEKSFELEAAWQEDIKGLQQGRFTVSQVVEKWKKYPQPEVTLDYFYAW
SVNVIRAALYLNKIPYNPNWLMFQKSVLQARQFWHQNVNKDLLLEGVCLE
WLQHQQDHYQPSDIFQQRWIRGAQV
>Tcr_1592 recA protein
MDENKKKALEAALGQIEKQFGKGSIMRMGDKGAIRDIDSVSTGSLGLDVA
LGIGGLPRGRVVEIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALD
PIYAEKLGVDIDNLLVSQPDTGEQALEITDSLVRSGAVDIVIVDSVAALT
PKAEIEGDMGDSHMGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIG
VMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGNETRVKVVKNK
VSPPFKQVEFEILYGQGISREGEVIDLGVKEKLIEKAGAWYSYQGQKIGQ
GKDNVRQFLKDNPDIYETLQVQIKERLMPKPNAPKATDEALDETGTD
>Tcr_1248 Phosphoesterase, RecJ-like
MLKYPKKPLITERTPSDKIHQAALSLGLSELQAKLVASRLTEADFSHDNM
PEELQKIVFPKLQYLQHPEQLKNAKQAAELIADAVESDGKIVLATDYDTD
GVTSAWVATRALIDYFGVSPERIEHMIGERKEGYGITEEVVNRILAIKGS
IDLVISADQGSSDEPRIKRLADAGIKVCVTDHHQMTTEGAPPSAACTVNP
QQAGCDYDKTVAGCFVIFLVMGQTRTELIRRQVIPETTPSLKDLTQNIAL
GTVADSVSLKSVNNRAIVQAGLAAINQFSHPAWQALQKMNDNQGQPFNAE
YLGFQVATRINAASRVSDVTTAFKFLNASSLEQATPLLAQLDQDNLDRRS
QQEGMLKQARETAEALYHENKFTLSIRMTGNAGIQGIIASRIGEQYGVPT
IAMTDLEDGYLAGSGRGIVSNIDLREAFQTMAERHPGLFKSMGGHKGAAG
CMIPIEKFDIFSTLFEETIQEQLNHTVPIPTIETDGRLTGRQLTPSLIQE
LNLLEPYGREWPKPLFSGVFEIQDLRPVGQTKTHLSFKLRSDDRQIISAI
FFNAKPTAEAPDGFSIGEKVECAYQPSLNTFYGKTSLQLKVVAMNSL
>Tcr_0003 DNA replication and repair protein RecF
MSKILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASG
RSFRTAKPHQLIQQNQSELVLFGTLTEADRIHKIGLARTSDKVTLKIDGE
LAKTQADMSAKLPVQLLTPESHRLLEEGPKARRQFMDWGCFHHNADFIHL
WRHYQRALKQRNHALKKRLPASQIQLWDAQLVDAAEKIDVIRADYITRLT
PYLVEFCQALMPEITVSPECHYRPGWPKTAESYRQLLADNFAKDTLQGHT
QYGSHRADIKFRFNGQEALMILSRGQQKLFVCALLLAQATLYQQHSQNPV
IMLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEPEKAKI
WRIQHGELIEQQ
>Tcr_0720 TatD-related deoxyribonuclease
MIIDSHCHLNILPEEIGTTEEVIQQAHELGVDKMMCIAIGPEQWHEVLAL
ADTYEEVYAAIGVHPCETKEVVVTDNAVLEAAKHPKVLAIGEVGLDYYHF
DAEKEDMTWQADRFRQMIRLAIQLDKPLIIHTRYSTPDCLKILKEEGADQ
VGGIMHCFVEDIETAEAAMALGFYISFSGIVTFKNAKELKEVAKAVPLDR
ILVETDAPYLAPTPYRGKTNQPGYTRYVVEEIARLRELSVEDVANATTAN
FKRLFKL
>Tcr_0481 DNA polymerase III, delta subunit
MIMAPAFLKQLQNPHFEIKPITLIYGEEPLYVRRALDGLRGLLKSQEYFQ
RDRYEVDASFKWADLKMETQAGTLFADRRIIELDIPKGTPGKEGGAFIQE
WANAMHDQPPEICLVITCEKLDSRQLKSKWVQAIEAHGWVVQSKPIEGIG
LLKWCQNRAQEAGLSLDEEAAGLLSERVEGNLLAADQEMEKLALLFPAGS
ALTAQNIIDNVADQAHYQLFALSTAMLFGRTQYALQILHRLQQEGLEAPI
VLWLLSKELRQLISIAQKQQMLSLPQVYKQLRIWSSKQAEFSAALQRHDL
AYWQSLLNVALQVDLTIKGLRKGDEWLGLSELVFKISQ
>Tcr_0736 DNA repair protein RecO
MATDIEQQAFVLHRRPYRETSLLVTFFTPEFGKQNAVIKGVRSSSKTAQA
KQAWLQPFQGLNISWRDKANRSSDLVSLRQLEPNHVRFPLGGEGSICGLY
LNELLYRLLYPSLEVSGLFGEYQQALYDLALAEDRYQQAWVLRQFEFALL
SELGYAFQTEVDYYQQPIQADKKYLFHLELGLFPEPFSQISLDQNQGIVI
SGQCLLLFAQKAYCESCLTEWKRLFRYVLTPYLGQKPIQTRSLFQS
>Tcr_0128 UvrD/REP helicase
MDISHILNDLNDAQRDAVTVEDQHALILAGAGSGKTRVLVHRIAWLTQVM
GFSAYNILAVTFTNKAASEMRARVEALIGNQSQGMTMGTFHGIAYRLLRT
HYKEVGLPQSFQILDSDDQKRVIKRLLKALELDDAQWPHKQVQAFINGEK
EEGRRPHHIDPGHNPYVRQMVQIYQAYEEQCKRAGLVDFAELLLRAHELW
LKNPQVLAHYQARFRHILVDEFQDTNSLQYAWLRVLAGASGRLFIVGDDD
QSIYGWRGAKIENIRRFDEDFSDVKTVRLEQNYRSTGTILKAANGLIAFN
QDRMGKNLWSAGEEGDPIRIYEAFNELDEARYVCNQVESWCEQGGSRSEV
AVLYRSNAQSRVMEQALLQAQIPYRVYGGLRFYDRAEIKDVLAYLRLLVN
TEDDAAFERVYNHPPRGIGNKTADQIREVARMQEISLWQAATQMAQDGLT
ARAKTAVNGFLSLIESLKDSTAELTLQDQVIQVISRSGLQLHFEKDTSEQ
GQSRLENLDELINAVSVFKPVQDNDTVEGVVPEEAAMTEAFDQPNFENPL
AEFLAQAALEAGEQQADQWESSVQLMTLHAAKGLEFPLVFMIGLEEGLFP
SQQSQEDPYRLEEERRLAYVGITRAEKQLMISFANRRRMHGSEFYPLPSR
FIKEIPDDCVQMVRLSGSVKHYGETASHANKGFALPNESGFRVGENVFHQ
KFGEGTVLGTEGAGDHARIQVNFTHAGTKWLVAAFAKLEKR
>Tcr_1852 Integrase, catalytic region
MVRRIHAESNGSSGARTIAQISSDRQLPISRYRAGKIMKQLQLVSCQLPK
HSYKKALQEHIAIPNLLDRQFSPSKPNEVWSGDVTYIWTGNRWAYLAVVL
DLFARKPIGWAMSHSADSGLTIKALTMAYESRNKPEGVMFHSDQGTHYTN
VKYRQSLWRYKIKQSLSRRGNCWDNSPMERFFRSLKTEWIPTAGYRNLAE
AKNHIGNYILRYYSQVRPHQFNGGKTPNKAEQIYLTTTSLIEISLWFIGL
IV
>Tcr_0196 DNA topoisomerase
MTNLVIVESPAKAKTIEKYLGKGFTVRSSYGHIRDIQKKGMGIDIENGFM
PNYEISPDKKKTVTELRKLTKEAETVWLATDEDREGEAIAWHLAEALKLD
VNDTKRIVFHEITKTAIQKAIAEPRKVDMDLVEAQQARRILDRIVGFELS
PILWKKIRTGLSAGRVQSVAVRLIVEREREIDAFESDYVYRLQGALDILD
ESQQVVGAVEVKRSAAFKTEEEAQAYLEQVKEAALTVSQLEEKPAKKSPK
APFTTSTLQQEASSKLGFSVKQTMMIAQRLYESGKITYMRTDSVNLSEEA
IQKAHDEIVSEFGESYSTTRRYKTKNADAQEAHEAIRPTDFSVKSVTGER
NEQRLYQLIWRRAIASQMADAQLKRTNVDIALEGMPAEKLVAKGEVITFD
GFLKVYNLDDDAKEGQLPPLKVGQALKLGELLVRQSFSRPPARYNEASLV
RTLEEMGIGRPSTYAPTIDTIQQRGYVVKEDREGRQRDYRQLSLTVDGID
ASTLTETTGTEKNKLFPTDIAGIVTDFLVKHFGDVLDYKFTALVESEFDT
IAQGKESWQEMLTKFYQQFHPRVDAAEDVSREEAGQSRALGNDPKTGKPM
FVKIGRFGPYVQLGDGENEEKPTFASLMPGQKMDTLKLEEALELFKLPRE
VGQMPESFSAKAVDGTEFAVEKGQIIIAKQGPFGPYLEYGPKMYAPIKGF
DPLSIELEDAVALIESKIVTEAEKIIKVFPGTDVKILKGRWGPYITDVTT
KKNAKIKKDEDALDLSLEECQKRLDEAPEPKKRGRVAAKKKAPAKKAAAK
KTTAKKPAAKKPAAKKAPAKKTTRKTPAKKTSDKS
>Tcr_0779 DEAD/DEAH box helicase-like
MTFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTG
KTAGFTLPILERLSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQL
SLKSTVVFGGVKINPQMMRLRKGVDILVATPGRLLDLFNQNAIKFDQLEI
LVLDEADRMLDMGFIHDIKRILKALPKNRQNLLFSATFSNEIRQLAKGLV
NNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWSQVLIFS
RTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVAT
DIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSAD
EVKELAGIENLIQKLLPRKIIDGFEPTNDVPETRLNHRPKKPKKPKKPKA
PHTSGKDTSENKPDAHAPKKNPANRNRRTNKPKSSPHSGSPKTSH
>Tcr_0938 hypothetical protein
MATQEVTQLKKDIEALKGDIQQLSHTIKELAQEKATEGKSKVFEELHIDD
LKEQLDALKSKGKDGLGA
>Tcr_0892 crossover junction endodeoxyribonuclease RuvC
MAQLKRILGIDPGSRKTGFGIIESGRFHPNYVSSGVIRVEKLTGAQRLKT
IFESVCQIIDQYQPHVMAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEI
PIMEYTPTQIKSTIVGQGHATKDQVQFMVQNLLKLTESPQEDAADALAGA
LCHDRYLTLGIDPEKISKGTKF
>Tcr_2076 Integrase, catalytic region
MYRSSFKAWRSRPKRIKPKLVKELAMVRRIHAESNGSAGARTIALVATER
AIPLSRYRAQRLMGKLGLVSCQLPKHSYKKATQEHICIPNSLDRQFDPAR
PNQVWVGDVTYIWAGNRWSYLAVVLDLYARKVIGWAMSYSPDSELTAKAL
TMAFELRGKPDGLLFHSDQGSHYTSTKYRQLLWRYQIKQSLSRRGNCWDN
SPMERFFRSLKTEWVPTLGYKSLAEARNHVTSYIIGYYSQVRPHAFNDGK
TPNKAEEIYWANCSKSVAKKT
>Tcr_1996 ATP-dependent DNA helicase RecQ
MTCYLAENGLFWRSDLKRFLSHREFMSDSKDVNALSLLQTVFGYDAFRSH
QAEIIDDLVAGSDCFVLMPTGGGKSLCYQIPALIRLGTAIVVSPLIALMQ
DQVSALKANGVKAAYYNSTLDYESADQVLMQLHTGQLDLLYVSPERLLNQ
TFFQQLQQLPIALFAIDEAHCISQWGHDFRPEYSKIGQLRDYFPQVPFIA
LTATADAATRQDILQRLNLHQPHVHVSSFDRPNIRYTVFEKRQPMKQLLS
FLDARPGHQESGIVYCLSRKRVEEVALQLQDKGYRAKAYHAGLPGDIRQT
VHQQFIRDEIDIVVATVAFGMGIDKPNVRFVVHYDLPKNIEGYYQETGRA
GRDGLESEALLLYGAQDIVTARHFVENNPNEAQRRIESFKLSCMVDFAEA
QSCRRSVLLNYFDERTDNACGNCDICLNPPRFFDATVAAQKALSCVYRLD
QGFGVRHVIDVLRGMEHERIRQLNHQSLSTYGIGKEYSAVEWDSIIRQLI
HLGYLVQDIQHYSVLKLTEKAGDILKGKVALQLALPRNKVAKSTRGGQKN
KADLTADELERFETLRRLRKDIADSEERPAYQVFGDAALIEMAKKCPQND
SELLAINGVGESKLERYGFEFLNQLRQFD
>Tcr_1853 Transposase IS3/IS911
MTKTRRTFSSEFKLESAQLVVDQGYSCKEAAEAMGVGLSTMNKWVKQLRE
ERKGKTPKASALTPEQIEIQQLKKRIKYLEEEKDILKKATALLMSDSLNN
>Tcr_1103 Excinuclease ABC, C subunit-like
MAEQSWVVYLLKCGDNTLYCGVTNDLDRRLRQHNGEIKGGAKYTQARRPC
ELVYQEGCEDKSSAMKREYNLKQLSRIQKERLFERGA
>Tcr_2052 exodeoxyribonuclease III
MKIVSFNVNSVRMRLHQLQALTDSYAPDIIGLQETKVQDHEFPLADIEAM
GYHAIYMGQKTHYGVAILYKKSLVLKASQYGWSHDGEDAQKRIIMADFED
QKGNDVRVINGYFPQGENRSHPIKFPAKEAFYQDLMTYLKEECSPEQNLV
VIGDFNISPEDKDIGIGEPNRKRWLRDGKTSFLPEEREWWATLIGWGLKD
TYRKVHPEEDRIFSWFDYRSKGFDAEPKRGLRIDTVLATKCLTEKAVDSG
VAYDIRGMVKPSDHAPVWTEFKF
>Tcr_1191 DNA gyrase, A subunit
MSDFAREILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLY
AMNELGNSWNKPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY
MLVDGQGNFGSIDGDSPAAMRYTEVRMSKIAHELLADLEKETVNFTPNYD
GSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNLNETVSACIALIDN
PELTISELMEFLPGPDFPTYGIINGTKGIREAYETGRGRVQMRARTSVET
DKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGM
RIVIEVKRGEVPEVLINNLYKQTTMQTVFGINMVALINSQPKLLNLKDVL
EAFIRHRREVVTRRTIYDLRKAREKAHILEGLALALNNIDEMIELIKASP
SPSVAKERMLERDWSIGNVEQLLEKVEMKDVRPEDLPEGFGADGSGVYKL
SPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKIAEFLEILRNPDRLTE
VVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVTLSRDGYIK
TQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLY
WQKTWQLPLASRGSKGKPIVNVLPLETGEHITSILPVSEFSEGYYVFMAT
KQSTVKRVALSDFSRPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNI
GKAIRFDENDVRVMGRQARGVRGMKLKDGMSIISMQVARKDTLILTATEH
GYGKCTPVDDYSTINRGGQGVISIKTSDRNGNVVYSVAVTPDQEVVLITN
KGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDELPDID
IEDMPESDEAPEIVSEDDTEQ
>Tcr_0597 ribonuclease T
MNKITHIKERFRGFLPVVVDVETAGFDPQTNALIEIAIVTLKMNSDGTIE
RDQTVQANVLPFKGSQLDKSALKFIGVEDPTHPFRMAVSEKDALEKCFAP
IRQLLKETDCSRAILVGHNAFFDLSFVKAAADRCKVKSPFHEFSTFDTVS
LAGLAYGQTVLAKAVQMAEIEWDNSKAHSAEYDTIKTADLFCKIVNQWPI
EKTRTLL
>Tcr_0531 recombination protein RecR
MQSPVINELIDAFKLLPTIGPKSAQRLAYFLLQNHQQDGHRLASAIESAL
EKVGYCQQCRNLSETEICGFCASKSRQTDQLCIVETPTDVVAIEQSGIYK
GQYFVLMGHLSPIDGIGPDELGLPILRDRLAQGEIQELILATNPTVEGEA
TAHYIQQMAIEFNISVTRLAQGIPLGGELEYIDSGTLGQAFAGRKAV
>Tcr_1199 integration host factor, beta subunit
MKKETIIMTKSELIELIARKQTQFSQKDVELAINQILDSMIDTLSEGDRI
EIRGFGSFSLHHRKARLGRNPKTGEKVELSEKRVPHFKPGKSLRDRVDAS
KDFTDIIG
>Tcr_1647 transposase
MLNLSPGESVSYEGKEYFIKQISDLTHLVLIHPDTKALKEVAISEISGVN
DFEVNPISDLALIPDAKWNEAIKRFEIIKPLLVNGRTRPMVEARANEYGF
STNSLYGWIRRYETTGKVTELLTDERADKGESKLSQQLQDLIKDVIKTEY
KTRQKKSITKVHRELKIRCRELGLKAPHYNTLRAWIKKEHPKDIERLREG
DKKAAEKYSPIRGEFPGAEWPFSFVQVDHTQLDIQLCDDYWRKPVGRPWI
TVVFDVFSRMVLGFRVGFDAPSGLVTGLAITHAAFPKEDWLAKYNVNGEW
PCWGINWGAIHMDNAREFRGKLIQRACDQYNINVEWRPVARPNYGAHIER
YLGTLAEELKGLSGATFSNIREKGNYDSEGNAVFTLSNIEEWLTVQIVGM
YHNGIHSALGMSPLEKFRQGILGNDQHPGIGLPARIKDVRRFRLDFLPFI
DRTVQRAGVSWDGVVYFADVLRRWIKAPDPQTSRSHRKFIFRRDPRDIST
IWFFDPDDNEYYPIPYRNTSYPAVSVWEWKAAQARLKEERDGRQNEDEIF
ATIKRMREIEERAVRTTKKARRTFERKKIVSMPPVKAEEKEQLPITEETE
QPKKIIKPFDDLDEML
>Tcr_0950 ATP-dependent helicase HrpA
MRFYLKFECLLSASMSELIDFCDKSAVIKAVDQALVKDRFFLSKQIQRFN
VHANTSEADFEALKNDQAWLKFCDRLAKSVATVQKNQQAVPKITYDNLPV
AERRDEILELIQNNQVVVIAGETGSGKTTQIPKICLEAGRGVFGRIGCTQ
PRRLAARSVAERIAEELGSSLGQLVGYQVRFHDQVHQQSLLKVMTDGILL
AEIQNDPYLNQYDTIIIDEAHERSINIDFLLGILKKLLPKRRDLKLIITS
ATIDTERFASFFEGAPIIEVSGRTYPVEVRYNPLVKIEDDEGNEFEQDIP
TAIVYALEELSEIDPFGDVLVFQVGERDIKETAEVLRKQNLKNTEIVPLY
ARLSMAEQNKVFQTSQKRRVILSTNVAETSLTVPGIKFVIDPGLVRISRY
SVRSKVQRLPIEKISQASANQRAGRCGRVSSGVCIRLYDEDDFKSRPEFT
PPEIHRTSLATVILQMTQMKLGSVKHFPFIEPPEDKAINDGFRQLHEIGA
LDEKRRLTESGRHLAKLPLDPRMAKMVLEGQKNGVLAEVLIIAAAISIQD
PRDMNESNRQAANQAHKVFEDPRSDFLFFLNLWRFYEDKRRHLSQNKLRK
LCKTNFLSYLRMKEWHDLFFQLEMSLKRISVKVGELHLYEEVKKGKTVTE
RLSDTHSMAVHRSLMAGLLGNIAMRDDENSYLGARNTKLFIHPSSVLFKR
KPKWMLSGELVETTKLYARNNAIIDVNWVEAIAPHLIKHSYTDPHWQKKA
GQVGAFESVTLYGLPIVNRRRCNYGPINPKEARKIFLRHGLVEGELNSKV
AFFVHNQKMIAEIHHIESKLRRPDFLVEEDVLYDFYAKHIPEHIYSLPAF
EKWVRKTEKTDPEALKALYLTQEFLLKQSYDSRLDVEYPDQVQIKNQLDL
DVDYFFEPGKAQDGMVVKVPLSALNLVQAEDFEWLTPGLLKEKTAFYIKA
LPKQLRKQFIPAPNTAELVLKEMAPNKKLDGRKANYVTQLVWALNRRAQQ
KVTSHDFEAVELPEYLEPYFVLQDDKGKKIAEKADLEALKTEYQHLVDAR
IQKHQSKKMPENRIIESWDFGDLADSQTIRSQGIEMVAYPALQVSGDTIE
LALLGDEDSAQAHHAEAVLALIKKELVEKEKYLQKKLPMQKACLCYAPYG
TCQELTQQVIDRALFQLVPHPEKIRKQTEFEAILETARSKWIEQAQQIAS
QVNTILTAHQKIAKQVKGNVNPRWLASVADIRTQLDQLISKDFVRVTPEE
WFKQLPRYLQGLEKRLAKIDVDPSKDQKAIREIQPILDAFETLAKEPAYQ
NHSGLVEIRWLIEELRLSLFAQPMKTLKPVSIQRLQKKLKTL
>Tcr_0766 AAA ATPase
MEYQAYQPLSDRLRPQTLDDFVGQTHLLGKGRALSKMFESGRMHSMIFWG
PPGTGKTTLARLIAKQSDLQFLNLSAVLDGVKEVRAAVEQAKLHRQQFQQ
GSLLFVDEVHRFNKAQQDAFLPFVEDGTFIFIGATTENPSFELNNALLSR
ARVYVLRSLDEDDLQQVLNRATELLNQELSQPLRIEPDAQAALIQFSDGD
ARRLLNLLEQAVDFAEVIPSDEADAETDENPPGLVVLTVENCREVIQGGV
RRFDKGGEAFYDQISALHKSIRGSDANAALYWLTRMLDGGVDARYLARRL
IRMASEDIGNADIRALDVTVNAAEAYERLGSPEGDLALAQAAVYLAVAPK
SNAVYMGYKAALKDIKEHGSYEVPLHLRNAPTKLMQNLSYGEGYRYAHDE
PEAYAAGESYFPEEMLERNYYQPVNRGLEIKIADKMQRLAQMDAASPLKR
RQD
>Tcr_2072 hypothetical protein
MTSSPSSHSNNLDAIRTEIIRTSFSNFRQKFSIQNNLFSCVPGINSELAS
KLYEQISPISLTEYDITQKKQRTHVATPLIFIVDALKHFEKMHEILIDNE
LIENKDEISNSWNEIKEVTSIALPFFEKQSETYPFLSSEKFIQAIQHNFS
KPIDSVEIETQIRRSIHGMKTKQFVYLSLIEPIIHNPSEEKQQYIHDLMT
LKAIIFNAFFYQPFYCNFNHSISSALRDLHEAELKMLNIEAEYEDTEDCL
ITLESLNSQLRSNEYRRLVKSLKTIINFLKKFYKKVSLSKRKGGSGGQKG
NKTSHNSWIEINPQTLIKETFFDSEQAIRTINTLSKTDPEELRDTASDEL
IENVYLDDTSSNNSLPEVRVLNRASQLQQIEKQNQFLKEELTPNELEQIL
IGLEKTASQSSVSEKRIRVSILLAVSLFTGYNLLQSHYLRWLAMNPKLRP
RYINLSENCEFIYIPTPTYPHSQSSKASSFYFNTQKAMVKLAVPSRFQSI
LFNLLTAYYSHDKAKKSSAIRNDITQNDIKKVIKSYKLDSRVTINLIQNN
FAKNILFYTNGDLWATAAISGREDVISSTQKHYTTVEQPYLQVAYRQAIK
NLFFEDIPMNDKPNAKSFLAHGDSFRPKKYEVVKFLNHLSRVIQETYSML
AQPNTNWSSKSVVNTLNLLMIFMETHQSYITGARDIKNPFISPLQLDSEN
FYTLNDKNINNGYTTRLGYLPSKLVTELEHFIKHIETLLYKLKKQPNFKK
ATLDKVSLSETWLNAKLSAKRGNSFPGFFLIESRNENKNFVAIPYTRIQA
AKIASTLLGKEAETFASLKPNANRHFFRSTLIERGLNPEYIDELMGHRHI
GTETWNPKGLFNPRDFRKEVKKTIDLLYKDFVVESPFKKGLTDGAN
>Tcr_1358 Nucleoside diphosphate pyrophosphatase
MTDDAKKIELLNTHRAYDGFFKIDQLTFRHTLFEGGWSPEIKRELFGRGE
AVIVLLYDLKAEMVVLIEQCRAGALQHAALKNHQAWLIEPVAGMVETGES
NLVACKREAFEEAGVTHAEFEYICQFYPSPGGSDEILYLYAAEVDSEALP
DYAGEASEVEDIRLIKMPFSQAKSKLMKAEFNVASTIIALQWLLFQKIEK
SC
>Tcr_2013 hypothetical protein
MFYSTLDQDIIHSNPVATPFSFHYDEDVLVGRCLFKEGLSVYCPNKGTKA
FHYNRQQKLKDCYIQVDGVTVYICSLVVSQLQEIGGEYVYRLKIKSILPA
EKEKLLKIYDDKKIEIDNSDAS
>Tcr_1048 chromosomal replication initiator protein DnaA
MFVQLPLKIGLREEVCFDTFIAEEEGVVLALNRFQQTLLKSNNGDAFYFQ
GESGSGKTHILQAACRFMTEKKSSSVYLPLGDDSLPLIPDVLNGLEQTLL
VCLDDVENIIGQPEWEHALASLLMRSKELGHKVVLSGTNPAGSWSIATTE
LTHAMMSVLPITLKPLTNKPDIVLAMQRHALKLGFELPLDVGNYLIKQFS
TDLQELLSVLRILEQATFVEKRRMTLPFVKQILTKHS
>Tcr_0656 Phage integrase
MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAV
NDAVALNHNIYDAIQKSRVEKLKKPACILFRDFWQIYFDSMNDRKLKPNT
IKTRKSQYEACYPFIGNTPLNEVRVKDVADIINHYIEQDKRRTASAIRST
LKDAFKEAIHQGIVEDNPAEKTRAPSVPVKRQRFNLDQVLKVLEINKETW
LENAILLALITGQRVSDIAKMKFKDFDGEYLYVIQKKNRQGAPEKRYKYH
KDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGLAKKGTSCHEQTIS
KRFTWLVREVVDGQNLPTFHELRSLSARLYKAQGNISEQKVLGHKSAKST
EIYTDARGSEWVAVEMGITKIH
>Tcr_0948 DEAD/DEAH box helicase-like
MSTTSTSSPLAFSTLGLHPDLLSNLKTLDYHFLTDIQAQSLPPILEGKDV
IAQGKTGSGKTAAFGLGVLQKLDVKNFNVQALVLCPTRELADQVANEIRR
LARQLQNIKVLTLCGGMPMGPQISSLQQGAHIVVGTPGRIEDHLKKARLT
LAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTLLFSATFPKQIEH
ISQRIMHQPVRVEVASRHDDSTITQHFYQVDSTEQRLQALRLVLLQAKPE
SSVVFCNTKKEVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSI
SILVATDVAARGLDIEALDAVVNFHLAHDPEVHVHRIGRTGRAGSQGVAC
SFISDKESYKVATLAEYLGQDIQTEPLPDASLLNQPPLQAKMVTLLIDGG
KKNKLRPGDILGALTANDVLNAGQVGKIKITDKKSYVAVTRSMFKQALKQ
LGAGKLKGRNFRVHKLTR
>Tcr_2092 hypothetical protein
MTSSPSSHSNNLDAIRTEIIRTSFSNFRQKFSIQNNLFSCVPGINSELAS
KLYEQISPISLTEYDITQKKQRTHVATPLIFIVDALKHFEKMHEILIDNE
LIENKDEISNSWNEIKEVTSIALPFFEKQSETYPFLSSEKFIQAIQHNFS
KPIDSVEIETQIRRSIHGMKTKQFVYLSLIEPIIHNPSEEKQQYIHDLMT
LKAIIFNAFFYQPFYCNFNHSISSALRDLHEAELKMLNIEAEYEDTEDCL
ITLESLNSQLRSNEYRRLVKSLKTIINFLKKFYKKVSLSKRKGGSGGQKG
NKTSHNSWIEINPQTLIKETFFDSEQAIRTINTLSKTDPEELRDTASDEL
IENVYLDDTSSNNSLPEVRVLNRASQLQQIEKQNQFLKEELTPNELEQIL
IGLEKTASQSSVSEKRIRVSILLAVSLFTGYNLLQSHYLRWLAMNPKLRP
RYINLSENCEFIYIPTPTYPHSQSSKASSFYFNTQKAMVKLAVPSRFQSI
LFNLLTAYYSHDKAKKSSAIRNDITQNDIKKVIKSYKLDSRVTINLIQNN
FAKNILFYTNGDLWATAAISGREDVISSTQKHYTTVEQPYLQVAYRQAIK
NLFFEDIPMNDKPNAKSFLAHGDSFRPKKYEVVKFLNHLSRVIQETYSML
AQPNTNWSSKSVVNTLNLLMIFMETHQSYITGARDIKNPFISPLQLDSEN
FYTLNDKNINNGYTTRLGYLPSKLVTELEHFIKHIETLLYKLKKQPNFKK
ATLDKVSLSETWLNAKLSAKRGNSFPGFFLIESRNENKNFVAIPYTRIQA
AKIASTLLGKEAETFASLKPNANRHFFRSTLIERGLNPEYIDELMGHRHI
GTETWNPKGLFNPRDFRKEVKKTIDLLYKDFVVESPFKKGLTDGAN
>Tcr_1200 hypothetical protein
MFLKHCGPFFMTKIFSFTITILFLLIGLTLGILNPNLVPFDLFWTQIEMP
LSLLLAIALVIGMLLASFYFFSQTLKLKWRLKRHEKANKKQLDEIIQLKK
QMLELQTQKNDSDKKLLSLETTEH
>Tcr_0088 Phage integrase
MNVVMYRKDGKTYWNIVNEQYLPVNALISHYLQVYLGSKSANTKKRKAYD
LLFSLTYFDSMKIDLIHRIESFELLTEPEINSFFKSCKLRKNVVTSLNTT
SLLTSIGLRNLIARDLPTSNIVETETAKERVDTFWSFINYVYGRRHGRYV
LTKEQEANYRQFKINLATARNSMGNWSKQTNDPIESRLPDEKYFELLEVI
KPNNDKNPFKGSKLRNEIIVKLIIETGVRRGVVAKLKISDVFNDKSPRIR
VTRTPDDSADPRRDRPSQKTKAHVSAISPELAQRIEYYIVNVRNNLPRAT
EHEFVFVSEKNSKDTSGNPLSQISINSIFSKLSKTLGLKITPHMIRHKWN
EIFDDGMASLARDMGFDSKRIEDVRKYAMGWSAKSEMAEVYNDYKIACIA
RDYHLQRQREQGQRFKAINNGSRHAES
>Tcr_1695 Protein of unknown function UPF0102
MGWLSQKIGQQKEQQAAVWLKTQAITIVAQNFRCKGGEIDLIGLDTDDTL
IFFEVKYRQSSTFGTASESVTPQKQQRLIQCAQNFLQKHPNYQACNMRFD
VLFFEDNQTQPEWLQDAFWS
>Tcr_1239 DNA ligase, NAD-dependent
MQDQKAYQKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPD
WILPESPSQRIGDEPLKEFHTVRHAVPMYSLDNAFEDDELKSFLKRIEEK
LPDQKSLAFSAEPKMDGLAINIRYENGQLVQATTRGDGQVGEDVTHNIRP
IYSVPLKLFGNNWPEVVEVRGEVFMSKSAFEQLNEHQQEIGGKIFANPRN
AAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLPQYYSEMIEQLVEWG
LPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKLQQQL
GFTARAPRWAIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGG
VIVSNATLHNMDEIKRKDVRIGDTVIVRRAGDVIPEVVGPILTQRPENTQ
LFEMPQHCPECGSDVVKELDKAVFRCTGGLVCPAQRKRALHHFVSRKAMD
IQGLGDKLIDQLVDKGWVKHPDDFYHLTVEKLATLERMAEKSAQNVITGI
QASLETTLAKFIYSLGIPEVGEVTAKNLANHFKDLNAIKQAEFEELITLN
DVGEVVAEHIVNFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANK
VVVLTGTLSEMSRPEAKVLLEAQGAKITGSVSAKTDYVIAGEKAGSKLTK
AESLGVAVLSEAEWLAMMPQQD
>Tcr_0663 NAD-dependent DNA ligase (contains BRCT domain type II)-like
MNLDVNGQPVMAFNFRENVDKAFENLMGILSGIQADEAMTNGEVVFLQNW
LSDQKYLHNDPDVFDLLDLLSSILEDGIITSDEKADLSQLVSDVLEYRDD
YVYMGDVDKDAFRRALGVFSGIAADDELTDMEVSYLNEWLDSHGELICHW
PISKVNRLVKSALEDGVITGEERESILSVLYEAVGGAFSDDGAASGKTTT
LPIDDVDCVEFDGKVFCITGALAYGTRKECQDLILKFGGKVSKGITKKLD
YLVVGPVASRDWFNTSYGRKIEKAVGYRDEGYGLKIISEEVWRKSF
>Tcr_1807 DNA primase
MNKTAKGTIPRSFIEDLLARADIVQVINQRVPLKKAGTNYKACCPFHDEK
TPSFNVSAQKQFYHCFGCGASGDALKFLTDYDGLSFVEAVETLAAMNGME
VPREKLTQKQAQQQQKTRDLYDVMHSVAKFYRQQLKNHPTSEEAKTYLKQ
RGLTSEIAKEFVIGFAPPGWDSLVSNLKADATLKQQLVETGMLIQKEDGK
TYDRFRHRIMFPIRDGRGRVIAFGGRVLSSEEQPKYLNSPETPIFHKTVT
LYGLYEMRQARQQVNHILVVEGYMDVVALAQFGIRNAVATLGTAITTEHL
DIMFRQVNEVVFCFDGDEAGQKAAWKALELALPKMQDTRSIKFLFLDQGE
DPDSTVRQEGVEGFQKRIQQAMTLSGFLFKGLIGRLGSPVSTVEGQQQLI
ALATPYITSAPGAMPDLLTKVLSDYVDVPVWRLGQIMGIRVSSTKQPSAK
KKNEQPVRIKATSIVLRLIRLLMLRSHWATVFSDELLQELQESHNAEFRF
LAQSIQVLKQNAYISESLESWLGEPNRAHVLKQVYAIVIQENEAFIENEF
KAIVLQIGSELKKEKDKKSLQKKLMN
>Tcr_1883 DEAD/DEAH box helicase-like
MTFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTG
KTAAFVLPALQFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCP
FESNVVTGGFASDKQLEILQSKIDILVATPGRLLNIMSKEFIDLSDIELL
IIDEADRMLDMGQGPDVLALIEAIPGDFQAACFSATLAGSGITKFAEEVL
DSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLKAILEDETCQSAIVF
CNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIKVLVA
TDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVER
HDITNLQRIEYHLQQSLPVSKIKGLEPNFKLKDVLKKPKKKKKKSTKKKK
K
>Tcr_0859 DNA-directed DNA polymerase
MAVFALVDGNSFYVSCQIAFEPALKNRPAVVLSNNDGCVVAANAKAKAID
AFLRQQKTHFGPGGYKAARPESIMFQPYFKVKRYLDQINAVVFSSNYELY
ADMSSRMHSVLSGFAVQQEIYSIDESFLDLSGMSLSDFTAYGEEMKRTVM
QWLGLPVAVGFGSSRTLAKLANHLAKKQPDHQDVLDLTVLSEASLNALLK
KVAIRDVWGVGKGLSAKLEMQGILSAYDLKVSDLKFIRKRYSITLERIVR
ELRGESCLSLGALATSDRQIISSRSFGQPVTEYAEMEQAVASYIVRAAEK
MRAQHKVCQFVTVSIRTSPFQNRSCFYQNSQTLPLIYPSDSSVLLIKLAK
RALRSIWQSGYAYQKAGVILSGVTEKGAVQIDCFAPNPQYSANPKSDRLM
QVMDFLNHSMGKGTVQLAAEGRKNDQAWQMKRSKMSKRYTTRWDELLTVR
>Tcr_1209 exodeoxyribonuclease VII, large subunit
MILLEVPFSEKEAAKSLGARWNPLEKKWYIPDELENDLSPFQKWLPLEQV
TQTALSPGAVPANEKEKGISLSQLMTQVQSALRHSFPGAVWVKAEVANLN
ERRGHVYLELSETAESGQPIATCRAMIWQSNVTRLLERFALETGSDLKPG
QKILLLAEVNFHEKFGFSLVVQDIDPSFTLGELEANLNKIRQQLIAEKLY
DLNKAYPFPEDFFRVAVIAPPNAAGLGDFRADADLLQASSLCEFKYFYTA
FQGDRVEAEMLAAFEAFNGLHAANPFDALIIIRGGGAKLDLNPLNVYSLA
KQIAQTTIPVLTGIGHERDNTLLDEVASTRFDTPSKVIAGIRHAIFNRAQ
KAQQHWLLIERASQLYVQKQKQSLADLEKTVQRQSLAITDKLKRVLAPLN
YQIQRQSVSLLQNKKHQLSQLNQEIHYQVNGALSLQKQQLNQINQLIKTA
PFTCLEQAKNKNKQWIGFILSSGPKTQLNRGFAIIKDKQGTPIKTAQKAR
QQSQIDITFSDGVVQAIPIDET
>Tcr_1115 DNA polymerase III, alpha subunit
MSQFVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVK
FYTAAMDAGIKPIIGSDLLIEAEDGNVFKVVCLCQNDQGYLNLSHLISMA
YLKNQKVVQNDMKALIKQEWLAEFNEGLIILSGGKDGDVGQAILAEKPNL
AAKRVSWWASYFPDRFYLELIRTGRDKEELYIAGAVDVAQRYELPVVATN
DIRFEQAEDFDAHEVRVCIHDGYILDDPNRPKRYSEEQYYRSSEEMVKLF
EDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEGLTLDEYFILESQKG
LDERLNFLFGDLSPEAFAEKRKAYDDRLKFELDIITQMGFPGYFFIVADF
IQWGKNHQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERV
SMPDFDVDFCMERRDEVIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGR
VLGNGYGMVDSIAKLIPNDLGIKLQGALDQEEQLQERYDNEEDVRLLIDL
ALKLEGTVRNTGKHAGGVVIGPKPLDHFCPVLCEPDGSSVVTQLDKNDVE
TAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEGFVEIERIPLDDSQTF
DLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGPLESGM
VDNFIARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVL
AGYTLGGADMLRRAMGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDL
VEKFAGYGFNKSHSAAYALVSYQSAWLKTHYPAEFMAAQISSDMDNTDKV
VHMVNECYAMGIDVAQPSINEGEIHFKAIRGQKAVRYGLGAIKGVGESAL
EGIVAERKQNGPYQDLFDFCLRVTRKVNKRVIEALISAGAMDCIHNNRQA
MLDSVGMALQKAEQKQKDEEAGQTDLFGDVTSFEAENESKLVDVPEMPEK
LRLKGEKDVLGLYMTGHPIEIYREELDKMVEQKLSALRPEKWNKKWAAGL
IVEARNKVTRNGSRMGFLAIDDQTARLDVVLRPAVFEACRDILIPDTVIL
VYGEVAEDTFNGGIKLDAEQVVTLAESRAEKARAIKLFADDSLAVNRIQE
LSTVLAHYTSEEGLPLVIDYQNGAARAQMITEDGVSFFPDDELLEVLRGN
GWRPEVVI
>Tcr_1921 formamidopyrimidine-DNA glycosylase
MPELPEVETTRKGIQPKVEGQAIQKIIIRNGKLRWPVDPSLVEKLPGLVV
LSIKRRAKYLLLETDQGHLIIHLGMSGNLRVLPQHEPAVKHDHIDLLLEN
GFLLRYHDPRRFGSWLWTEAPIQEHSLLKSLGPEPLTDAFNAEYLFQKLQ
GRKTAIKTFIMNNQIVVGVGNIYANESLFLSGIHPTRPAQSLTLTEATKL
TAHIKTVLSAAIEQGGTTLKDFLTPDGKPGYFEQKLNVYGRENLPCPQCD
SAIEKVVLNQRAAYFCSNCQKQLDSTVKIK
>Tcr_0044 DNA polymerase I
MTQILPEFNPDSPFILVDGSSYLFRAFHAMPPLTNTKGHATGAIFGVINM
IGKLLEQYQPERIAVVFDAKGKNFRHELYEDYKAHRPPMPDELRIQIEPI
HEIIKALGIPLLVIDGVEADDVMGTLAHQATQAKMDALLSTGDKDMAQLV
NEHITLVNTMNDTLMTPDSVFEKFHVKPEQIIDYLALMGDSSDNIPGIPK
CGPKTAAKWISEYGSIDNLIEHAEEIKGKIGENLRANLEQLKLSQQLTTI
RLDCDLPIALNDIKRHEADMEALEALFSEYDLRNWLTRVLKGELPFSKSS
GRKAHSETVTNGQSKKANTSPSTETPKADSQPYETIVDWHTFDQWLKKLE
ASDVFAIDTETTSLNAMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYD
GAPEQLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNAGIEVQGMAY
DTMLESYCFNSVATRHNMDDLALTYLNHSTIHFKDIAGTGKKQKTFNQIE
LETASPYAAEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKM
ERNGVLIDRQMLADQSYELGQKLTELEQKAHLIAGTPFNLNSSKQLQEVL
FERLELPIVKKTPKGQPSTAEPVLVQLAEDGHEMPNLILEYRSLAKLKST
YTDSLPKQINQQTGRVHTSYQQAVASTGRLSSTEPNLQNIPIRSAEGRRI
RQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKDIHQATAA
EIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAFGLAKQLNISRGLAQEYIN
LYFARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDINAKNGQLRQYA
ERTAINAPMQGTAADIIKTAMVKMQQWLDQTPCDIKMLMQVHDELVFEVA
EADMDQARKEIKTIMEAALKLDVPLIVEIGDGLNWDEAH
>Tcr_1932 conserved hypothetical protein
MKKRVERKTGRKTPNQSAGSLRIIGGDYRGRKLPVLMAEGLRPTSDRVRE
TLFNWLQFDIAGTDCLDVFAGSGALGLEALSRGAHSVCFLELNRDNAQQI
QQNLIALKISESDVIQVDSLQWLQQAPPKVFDVIFLDPPFNQGLMQPAID
LIFQNHYVKNAQAWLYLEQEKALDWPRLPDGWVCHREKTTSEVRYGLFKF
ADSDE
>Tcr_1828 Holliday junction resolvase YqgF
MTKPIEGVVIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHIS
RLFEEWKPSAIVVGLPMRLNGEEQALTQPARKFGQRLSGRYQRPVYYIEE
QLSSIEAEQRKTKTDQPMDDHAAQIILENWLDAL
>Tcr_0529 DNA-directed DNA polymerase
MTDTVLARKWRPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVG
KTTIARIFSKALNCEQGITSKPCGVCSTCRSIDEGRFVDLIEVDAASKTK
VEDTRELLENVQYAPVQGRYKVYLIDEVHMLSKSSFNALLKTLEEPPEHV
KFLLATTDPHKLPITVLSRCLQFNLMRLTLPQIQQHLAYILQQEQVTFEE
TALAMIAKSADGSARDSLSILDQAIAYGGGKVQYDAVQAMLGLVDQQFTL
NILSALANESADELKEVIQQLALMGVDYTALNGQLIEALHQMSMLQVLGD
LTESSLIEVEMLQKLSEQLSPERIQVLYQIALLAKQDMALAPDIRIGFEM
SLLRMLAFKPVFSETMSSMEQTEPEEGMSRQENVKTARPGQNEPAAIPNQ
PAAADEARTNFEAPSHFEAPSAPQSSMPETQAAPQSSAPQPSGEMDHLTD
LKARLDSTLGKSEAPIEHRENHDAEVPTFDVPSGQSLEQSASFLTETRQE
DDRPVESAAAFQASSHVPVQKAVTEEAMAPAFESPGMESVTPSSQEHFEQ
EPVSEAVVADAPIEMNADTASVTDWIALITQLQLEGMAAELARQSILVKR
DAQSLTLSIDPEQVHAKTELALQRLEEQVKAQLGVRLIFVDYPEDHWTPA
KHFAAEAKARQGNAAESIRNDAVVQNLIQTLNLKVIESSIRPITKA
>Tcr_0324 excinuclease ABC, A subunit
MLEEIIVRGARTHNLKNIDVTLPRDKLIVITGLSGSGKSSLAFDTIYAEG
QRRYVESLSAYARQFLSVMEKPDIDHIEGLSPAISIEQKSTSHNPRSTVG
TVTEIYDYLRLLYARAGTPRCPTHNSDLVAQTVSQMVDHTLELPEGTKCL
LIAPVVRGKKGAHQNLLDELQAQGYIRARIDGKLMELDGSIELDKKYKHD
IEVVVDRFKVRPDIKQRLAESFETALHLADGIAQVVPMDEEEDFHLLFSE
RFSCPQCGYSVPELEPRIFSFNNPHGACPTCDGLGVKQSFDPERVIMHPD
LSLAGGAIRGWDRRHKYYYDLLKAVADYYQFDMETPWLELTEEQQNIVLY
GSGKEKLPLPHGRYSDTRRFEGVIPNMERRFTETDSKTVRDELDKFRVSH
VCSSCHGARLNEAARHVFVADETLPALTERPIGNLYDLFSQLELQGTKGE
IAEKIIKEVFDRLSFLVNVGLNYLTLNRSADTLSGGEAQRIRLASQIGAG
LVGVMYVLDEPSIGLHQRDNDRLLNTLTRLRDLGNTVIVVEHDEDAIRAA
DYVLDIGPGAGVHGGRIMAQGTPEEVMQNKASLTGQYLTGEKAIQTPKNR
LPLPDHWLSIYGASGNNLQTVDLKIPAGLLTCITGVSGSGKSTLINETLY
KITASKLNKALLEPAPYEKVTGLEHFDKVVNIDQSPIGRTPRSNPATYTG
LFTPIRELLSATPEARTRGYTPGRFSFNVKGGRCEACQGDGVLKVEMHFL
PDVYVACDVCHGARYNRETLQVDYKGKNIHEILEMTVEDARAFFDAIPVI
ARKLQMLLEVGLGYIKLGQSATTLSGGEAQRVKLAKELSKRDTGSTLYIL
DEPTTGLHFHDIELLLKVIRNLRDHGNTIVIIEHNLDVIKTADWIVDLGP
EGGSGGGQIIATGTPEEVAENKASYTGHYLKKILS
>Tcr_0658 C-5 cytosine-specific DNA methylase
MYKRTINHFHLFCGLGGGAKGFNMGQAKVGQVEAEFRCIGGIDSDAAAIQ
DFNQLAGAKGTVMDLFDASQYLDWHGHLPPEDWKEATPEDIRRAAGYERP
NIVFTSPPCKGFSGLLSQTKSGTDKYQALNRLTTRGIKLALEAWQDDPVE
FFILENVPRIATRGRYLIDEIIELLESHGYAVAETTHDCGEIGGLAQSRK
RFLLVARHQEKIPPFLYEPETKSLKKVGDILENLPMPGDESAGPMHRIPN
LQWKTWVRLAFVEAGKDWRSLQNLNVQNGFLTDFGIMPNEQYHNSVYGVK
KWEEPTGTVAVRSTPSNGAYSVADPRWAGTHKFGQLGVRNFNETSGAVSG
QSAVGGGRYAIADPRINGERHKNVFKVVQMKGHSPTVTSGTGPTAGGLTI
ADPRMPDTNKNRHNGFYRVVDFNGQAHTVTGAKHVAGTAMSVADPRGGKF
GGKYSVTDFDKHAKTVISGSTTGQGAFAVADPRPGLGKDGNREHYQTAGH
YGVRPWDSHSYAVPGKAKLDRGHWSVADPRIQDAENSTLPSEKDKGAFII
QSLDNTWHRPFTTLELAALQGLVDPEEFLHLFGGSDSAWRERIGNAVPAP
TAAAIASVMGQTILLAEAGETFMLSAMPIWVQPLVVSASVENRNWATI
>Tcr_1672 ATP dependent DNA ligase, central
MATAYADAKKPKMLLLETYQENQSVLGWWMSEKLDGVRAKWNGKALISRG
GHEIHAPDWFVADLPAFELDGELWTTRQDFENVVSIVRQQHPDSRWDAVS
YQIFEVPNQLGNLMDRLAVLKNYLAKHQLTHVQIIPQTKIISEAQLTSEF
DRLTEIGAEGLVLRAPNQSYETGRSRQALKMKAYEDDECQVVGYKPGKGK
ISGLVGALLCDWHGKMQLSIGSGLSLQEREHPPEIGQWITFKYYGLTGSG
KPRFPVFMRIRLDQDM
>Tcr_1084 DNA mismatch repair protein MutL
MSQLPNIPSKKCLDISLLPSHLADQIAAGEVVERPASVVKELLENALDSG
ATQIEIQIEEGGEKLISVIDNGMGIRQSQLMLAVSRHATSKIHTAQDLAA
VATLGFRGEALASISSVSRLTLTSKFQGESAAWQLSGEGEGRWSEPTPTA
HPQGTHVEVKDLFFNTPARKKFLRAARTEFMHIDQLVKRVMLSRPEISMK
LVHNQKVVRQVHAAHDDAALKQRLKQLMGTPFVDQSLELNFEAQDIQLSG
WVGQATFNRSQTDMQYLFVNGRIVRDRLLSYAVKQAYADVLYHGRHPAYL
LFLNIPHDLVDVNVHPAKYEVRFANGRWVYDFLRRSVREAVTQPVGVASN
PNNAALIPSNVFSGNHSGESHQMDSQVSQSAMQFQMPSSSASGSGMGVSE
SVPYYAMAPDAETVESLKNRFHEADAYSQNSTPILGYAKAQIHGVFILAE
NEKGLVLVDMHAAHERIVYERIVYERMKQQWQQDRLISQPLLVPIVVSLE
SSQVQVWEAYQEEFQKLGFEAEAFGPEQLKFTMVPSLLSKSDIPRLINDM
IADLAVAGQTQLVDEKINAILSTMACHGSVRANRHLTLDEMNALLRDMEA
TESSAQCNHGRPTWVQLSMEQLDGLFMRGQ
>Tcr_0321 TatD-related deoxyribonuclease
MSYLFDTHCHLADPKFSHSLANDLEIASNHSTSEFLSVGTSTADWFDTLQ
LSKQFHNIHAALGLHPYFIEADYSSQLDQLESLISSNAVSAIGEIGLDYS
KDVTAQESVQMTVFSQQIQLAHTYNLPVSIHCLKAYNPMLNVLKNHPIDG
VMHGFAGGAQMATQFIDAGLHIGVNSVLLNQNARRYHEMVQCIGLEKLVL
ESDAPFGMNLTPDAPLASLKQVANKIAELLECPVEAVAEQTTRNAEKLFI
RKES
>Tcr_2200 methylated-DNA--protein-cysteinemethyltransferase
MTALSFNEQCYALLEQVPAGKVTTYKALAEALGTRAYQAVGRAMNQNPNP
VVVPCHRVVNHNGELGGYAFGMARKIELLTQEGIEIRENKVVDFKNKMIT
WQPSAPP
>Tcr_1015 DEAD/DEAH box helicase-like
MSFSKLGLSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTG
KTASFVLPLLEKLNTDNAIRGRSIRALILVPTRELAMQVETNVVDYAKHL
NLSSMAAYGGTDIDAQKQRLMQGIDILVATPGRLLDLAYQRALFFDDLEF
LVLDEADKMLDMGFIDDLYKITDRLPHQRQSLLFSATLTEAVRYLAADTV
SDDATEISISPQNKTTPKIKQWLITVDKDTKSALLSHLINEQHWDQALIF
VEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKFLIA
TGIAARGIDIDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSK
DDFKNLCAIESLLGHLIERIEIAGFPVKKIVPVSILNYRSKQK
>Tcr_0578 hypothetical protein
MNHAVLLTGLPGAGKSRFKQAFAKQAPLVPVMELGLANEPSFQLSSFEAI
KVWCLIDVRSKLEDTAAEHVLQRMLAQASGVVLSFVDQADLMAQSYWQAW
LADNVGSQTDCPRFRWFSTGLPSDWDWQSFGHDQPVETVIDSLASFSPMA
HYERVTFAYDYAQGANPTNLEHLLLGLDASRQNLGMEIWRVQGVVKTTEY
VNPVAIEGTVNRWDTFAGELDNELGHLRIEGLNLDKAWLQQIMDASVL
>Tcr_1120 Exonuclease
MFERLKRHWNQKRLKDPRFAFLFNTPSDDEVVCFDCETTGLNPRKDRIVS
LSAIKIRGNEVLTSEALNLTFVQEAAISEESIKIHWIRNEDTKAGLSEQE
GIEAFLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQIEVSSRYY
DYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKLKSL
ENYQGLY
>Tcr_0083 hypothetical protein
MSNVDRQDNESSELKYTPLSPLPNYKSSKHYVEALDYAINHDRISNIAIT
GSYGSGKSTIIESYIAQNSEKQCIKISLAEFTSEELATEVGRQELERSIL
QQLFYQRDASTFPDSRFDRIKSINPIKTKGTAIFILMYLVLSFVLFRDGW
LNSFIQNFPIFGTSDKDIFLIWKWCFWGVWGFMSFVGLGALVDKFRTIKK
LSLKLQTIGEIAVDKDAEISVLNKYFDEIRYFFSQSKVEVVFIEDLDRFK
KLNIELFTKLREINLLVNSSLKASEKNPNQVNFVYALKDDLFTKNGERTK
FFDFLIPVIPFVNYSNTGAKLLNGLKNHKEEIGREFIFELSPFISEMRLV
HNIINEFELYLLNLRQFVEGVDGLITKRKLFAFIVYKNVFPVDFSELNSG
EGKVFNLLEMKPKILKEITTELNARIDEFQRDTNDSKELIHKSLEDNKLL
LAAKLIEKIGVNWNQVFIGNKSYQKQQTSLFQLADAIIKNPKFKINNYGT
ETSLEEEVADYLRKEKLITFLDQSKEAQIEISRIRTKIRHLKDKTLAEIL
QDFPEKHKSLNDCLKTDFEAKEPIVAIDKNQLLIKLVSGGYIDDSYHHYL
TYYHPSSKVSLPDWKFILHVQGKANTGEFQDYPIQNVGEVFSKLRPQDFD
SSASWNISLVDYLLQSNSTQAIHSLVVGFGKDEASLDFIKKYFYSKSNFE
LLMKHLSGHWPQVWDELTKLQTEQENSEILLKLIDDLDLNSWIELASHSA
IKDAIEKDDDFVEIVRQVRDVDNLENLFKALEIKFYNLNLSLPLADKEQN
FLNIIVKNDFYKMNDEMLSLIIFLSCPERINEYSTQQLSVLLEGSCEVVR
KRIKEDFDEYLDDIYLQLDKPQQDSEEFLLRLMNDKIINDLSLKAKSQIL
EKQLTRFSKIENVQNQELWSDIFDLGRIELNWENVVRYFHYSEASIDNVL
LSLLSDSNFVSELCSNKMILKELDGLGDEYEGITEKLSIALINNLEIPDR
EYREVVKNLYFTWDSYSLSKLNRNKVQILIEERLLNLSQSNLDGLIEYDE
DLAFLFIAPYFTSFIRKLIDGELELSDSSFLKAVLISGKFSDVQKTELLS
VVSEEVLAELEIDAELSEVFLNLIETEEKPWSFDLLERLMATDSLELDEK
LNVLSTQLKYITDHNSLHRMLLHLGNGYEEIFTKGTSFVTVEDTPSSRKF
INAMKEPDKKWIGTTRFKDALPKDVIHIYVKKWS
>Tcr_2153 ATP-dependent DNA helicase RecG
MLAQLKLTTLKGVGDKLVEKLNRLGLFHVQDLLFHLPLRYQDKTKLTPAS
QLLIGQEALIEGEIIGQHMTQSRNSSLIVKLVDPSNQPISCRFFHFHYRQ
AQQFKRGLKLRAYGEVRSGPSGLEIVHPTYQLFNPESPPPLEETLTPVYP
VTEGLGQPTLLKLMQQTLQLLKQYPLEEALPPSLLEELRLPPINQSLQTL
HEPQPEDDLLQIKRFEHPAQRRLIFEELLTHQLSLQLLRQHEKQRIAPKV
PASETASRLLKNLPFKLTGAQSRVLNDIQQDFNQPHPMQRLIQGDVGSGK
TIIAALAALQVADAGYQVAVMAPTEILAEQHKNHFLEWLDPLDIPVAWLN
GRMKAAEKREALQKIESGKAKVIIGTHALFQDSVTFDHLGLVIIDEQHRF
GVHQRLALHDKGTQNDSHPHQLIMTATPIPRTLAMTAYGDLDLSIIDELP
PGRQPIETAVLNNTKRFEVMEHLQAQCKQGVQAYWVCPLIEESELLHAQA
AEVTAQQFMDHWPDLRVGLIHGRLKAEEKTERMRAFKNHELDLLVATTVI
EVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGSKKSHCVLLYQSPMG
ETSKARLNIMRESNDGFKIAEEDLKIRGPGEILGTRQTGGLHFRIADLKR
DQAMIPEVKHYAELLVRQHIEVADALNTRWVGEKMDYKHA
>Tcr_0832 Phage integrase
MSIYLRNNIWWTKFVAPDGKRIQRSTGTEQRQQALEFEAKLKSDLWRVHN
LGEKPRLLWKEAVVRFMREKQNKDSTNEVSIFKYLDRYFGHLYVDEIRRM
HVDEIIQTRLKEGVSNATINRLLQKLRAVLNKAHKEWEVKCDPPYIKLLK
EPKKRVRWLAEPEALRLINALPEYIADMATLALETGLRESNVTLLKWEQI
DFSQRIIYIEGDDILKSEQAFVVPLSDTAVEVIKRQVGKHPTRVFTFRGD
PIRRANTKAFKNTCAELGIEDFRWHDLRHTWATWHVQRGTPLEVLQELGG
WTDYKMVKRYAHFTHQHLKQYVNRAPSGLATISATSAFARQ
>Tcr_0409 Phage integrase
MSDYQRFIKQLKLENKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALK
SDQAWAFLDQFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFY
AFLIEQGRANHNPAKGLKAPKQPKALPKSLDVDLTRQLLEQPLKTWQDVR
DQAIFEILYSGGLRVSELVELDLSPGLDGLASGWVRVLGKGQKERDAPVG
QPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVRSIQTQLDKRTLQA
GLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQ
HLATVYDKAHPRAKKKP
>Tcr_0124 nuclease (SNase-like)
MKSFISRTMLWPFFISALLFVPFLTHADDCAPKKIDVWVKASFALSGDTV
IIQNKQYRLIGVEAPQIEKKQKFYTTGQPLAKQSQTNLNTILANHNLTVG
VEYDQKRSDEFYRTYVHLYVKEGDKIINLQKRVLESGLALAQSEPPNELH
QKCYYEAEKTARQNKVALWSLAEKRPDLNYPIAPSSNITTDDEGYHIFKG
KIVKVDKSSNNYILNMDTTGIRIRKADWDRFDYDQLEQLEGKVIEARGFG
FLFQGAMFVKIHSPYAIDRLNPVNQ
>Tcr_1698 Inactivated superfamily I helicase-like
MKNVVHITANSRLSRFLKQQLLANQWQGKTVVKTPEVMTWAQWWMQWQQS
ALLRGDLPLEHLPHKTLSAFEAQLVWEQLLDEKLQQQPELALLNQTATAK
QLYQAWCFFAEYFPAPAFDEAFITEEVRLFLDLKTAYLAELEKHHWADAV
LQQQQQLAHLKTIGHLPEVFQLHGFDELSPFMKQWIEIVEAHGCDVHQVD
DDSQPTAKQQRLYSALNPQDEIQQIALWCAEQLKQQVKTKPLHAIRIAVV
APNLAEVQQPLSWALDEVLYQQFGQALPLKAARHTLYNISLGTPLAQTPI
VKNALQTLAFAMMPEKTLAYADWSSWLTSPYTLGSLVQRQKADVRCRKLQ
WASFKWPNLLQAIQQKETEKNRIQLPKSLMQALEKAAQAPRSTSLILSQF
IAQAEKKLQEFRWAESSKERALSSIEMQQKETFLEALASFAQLNMTQAKQ
PVSVWLGLLKRYLNETVHQPQTQGIVPIQIMGTLEAGGQAFDSLWVMGLT
DEAWPRPPNPNPFLPMALQRTYGLPRSDALRELNYARQVTLRLAKSSPEI
VWSYPQQLDDRVALPSPLLTLAELKAAQIYEPVPYQSLATQLWAQGEPLE
WVADHQGPEVPLGTRVPGGSGILTAQNKCPLMAFMDYRLGARQQLEDVEE
GMRSNHLGTLVHAVLEAFWRQVKTQHNLLEMDEKAVSELVSQLLEDAMAP
LSSQFDAHYLSLEQNRIHQLILDWLALERVRPNFKVVAFEENHTPSIGGI
EFNLKIDRVDEVFDAETGELSRLILDYKTGKASVGDLLKEPIEAPQLAVY
LHAYHDVVAGLGYGILHSDDGVKFNTLISDEGVMLKDRSQLIFAKLAAKE
GSDFEGMSWSDFLQALRDEVSELATQIQQGQAEMTFRKETDLNYAASLLA
LRLPEVIAQMGERGVMDEESAE
>Tcr_0106 serine/threonine protein kinase
MPQSDTAKNLIEQSDLSHVKLVGESPSIWTFQAIQTIEGYQKKQLIRVNT
DIRNHFAVQREKDLLHYLNQFEDDFPRFNEIRKQGFAYLSFFDYVGKKSL
KQKVKKSGTLSLKKAKQLLSNLIATLEHAHNVGFVHTQLSPENIIVGKSR
FYLVGWNNAIPSLSSFESELLLGDQQYCPPERLNGEYSDAGDIYNLGCTL
YFALTGKHIYRLNKVEHLFDQLYAHAFHTPRKLHSLPIFWRQLIVWMTQK
DPQKRPGLAELKQWVLDESVPKSIREQSFKPNKKFPKDCLTALADSHFLY
ALFKKASLYESSGDSERAFNLYESCAFREYTRAENNLGLMYEKGTVIHQS
YLKAMNMYHHAFKKGNPFAAYNLARLFENGLGAEQNLVQAFKLYQFSAKR
GHLAAQNKLGELYREGRGVEKDVVQARFWFGMAAHYGNPVARLNIKKSLA
SSHG
>Tcr_1917 DNA repair protein RadC
MMGLSYQKICKNMAITDWHENDRPREKLLKFGAPHLSDAELLAIFLRVGV
KGKSAVELAQDLLDHFGSLERLLNADEAAFCEAKGLGQAKYVQLKAVLEM
SRRHFESGLKKGEALTQPEKVARLLQHHIGHQSREIFGLVLLDQQNQFIQ
FVPLFTGTINQATVHIREVLKTVLDHHAAAVILAHNHPSGDPTPSQSDRD
LTHQIQQGLQLIETRCLDHIILGDHGRWYSFTQQGIL
>Tcr_0212 UvrD/REP helicase
MFGLNDRQLKGVMHIETPALVLAGAGSGKTRVITEKIAYLIRKHDVQPHH
IYALTFTNKAAKEMKERVSKLLKDDPSKGLNVSTFHNLGLNIIRQEYHAL
GYKSTFSIMDATDTKQILKELMKKQQLSEEELDGVQWDISNWKNAHISPE
KALEMAEDNLQQARAILYDYYQKQLHAYNSVDFDDLIGLPVRLFNENPQI
LDKWQNKVRYLLVDEYQDTNAAQYELVKQLVGVRAKFTVVGDDDQSIYAW
RGAQPENLELLKKDFPNLEVIKLEQNYRSSNRILQAANTLIANNPHVFEK
RLWSEMGMGDMLRVLACSDENHEAERVISEIIVHKFKHRTQFKDYAILYR
GNFQSRLFERALREQNIPYKLSGGQSFFDKAEIKDVMSYLKLIVNPDDDA
AFLRIVNTPRREIGASTLEKLATYATKRGVSLFDATQELGLSTVLSEKAL
QRVQHFGGLLLSWAQEADALAGTEVTSFVRQLIEKLEYDNWLHETSNTPR
AAEKRIENVRDLLLWIERIIDKALNEDGDELRLEKIVAHMTLMDLMERNE
EDSEPNMVTLMTLHASKGLEFPHVFLIGMEEELLPHKQNMESPGLEEERR
LAYVGITRAKRSLTMTYAKKRKKYGEELKCEPSRFLEELPEELLQWEGKP
GVELSPEEQKVTGNAHLENLKAMLNPG
>Tcr_2125 Deoxyribodipyrimidine photolyase
MKTLVWLQRELRINHHPALEAAMAASDDIIVAYFHDPEQTIGAANTVWLA
NSLQQLQQDFKTRHGRLWCLEGIFEQQLEQVIQTHQIEQVFYTFQLGHPF
KAMQQQALNVCQRCQVPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTL
SRKLSELEPFSDPIDTLEKTARTVCQSGQDQNLPQSLNQILARPWARKIM
QHWQVGEHKAWSKFETFITEGLANYEQDRDFPAIDGTSQLSPHLHFGELH
SRAIVFELLSLETEPTIANQAIRVWLRQLAWREFARAILWHFPHTETHPF
QAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGMKQLWETGWMHN
RVRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGVD
AAPYYRLFNPVRQSEKFDANGQYLRQWLPELKTYSNKHIHAPWLIAPNEK
HFCPIIDLTESRQHHLDKVATLKSLNQIH
>Tcr_1756 NUDIX hydrolase
MKKKKTPVILTKKELANTRIFTVEGLDIVYGNDTQVQFERLVSSVHGAVL
IVPIMDDCLVLIREYAAGVERYELGFPKGKIDPGETWEEAVLRESQEEIG
FLPADIALMDSVTLAAGYMSHQTHLVLATGLSPSDAEGDEPEPLEVVHWP
IKDWPALLAHPEFSEGRAYAALMLTLQHLKHIG
>Tcr_1713 Exonuclease
MTPQTDLEPLAQQLDQSDDYQVLRRFKPLPSYRSPAGETVHKVCIIDTET
TGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNFLNEPEGEISAEVTQV
TGLTLDDVKGHQIPWAEVEADMADVQLCVAHNAAFDRPVVERYSDCFIDK
VWGCSAVQVDWFHLAKVGSRSQEFLCWKVGQFFYGAHRALDDVQALTHLL
TFPISEAALPAFHFLLASVRQQKVLIKATSAPFELKDDLKQRGYRWQPTE
RVWQKVFEASQQQEEIAWLIENNTPNPDIIKLKATDTFSIRAQ
>Tcr_0362 uracil-DNA glycosylase
MPNQNIQLDESWLNVIGEEFEKPYMQQLKTFLLAEKAAGKEILPKAKLWF
NALNSTPFEDVKVVILGQDPYPTPGHAHGLSFSVLPDVKPLPKSLLNINK
ELLDDLNIDNTHCGYLQPWADQGVLLLNAVLTVEAGKANAHQNKGWEQFT
DAVIHALATQRQHIVFILWGAYAQKKGKIINPAHHFILKSPHPSPLSAYR
GFFGSKPFSKTNQYLSEHNIPHINWQLPNKIF
>Tcr_1697 UvrD/REP helicase
MNLNLDFGTPDSMNDSLAEAINPLKNLILDEALPDGKARFQAIHPQHSYI
VQAPAGSGKTALLTQRFLALLSQVETPEQVVAMTFTKKAAAEMRERILEA
LHFGLTSLDESASIYDQNTWHLAQAALQNNQQRQWKLLDNPNRLRIRTID
SMNGYLVQQMPLLSRLGAQPQVASMNDTLYLKAVRLALKDADTTEASASL
LRLVNGNYRSAENLLVTMLKKRDQWMGALLSYGQDAEAQERAELEKALAL
LVSQEKSQAIDTLYPVMPLLQQIAEFAAFAMQNDQPQLKPLVDDPLTKES
DLAAWQALGDWILSTQGKFLKTVTVKKGFPAGKGENKEQKDAFLALLAEL
NVADIRGQYAEALVLLSQLPEGHYSDEQWQNLRHLIQLLRRTVAHLKLCF
QTEGETDFIEVAQAASQALGHELEPTDLAQQLDYTLKHLLIDEFQDTSVA
QYDLVKKIVAGWSQEDAHSLFIVGDPMQSIYRFREAEVGNFLQAWKGRLG
EVPLTPLSLEVNFRSSKGVVDWVNQTFAKVFPKKSLIEQGAVSYAPAVAF
SEEASPAVYTHWALQQSAWEEAADILTLIQERLSTLKTDAAIGVLGRSRS
HLMCVAIQLKQAGIAFRAVELEGLKDRQEIQDCEALTRSLLHLGDRPAWI
ALLRSPLVGLSLTDLYRLLGENDDYFQTPVWETLQDKTHSGWQQLSDAGR
QQLGRSLPVLEKALNSMGSYALEVLAHETWLALDGPQTVESAMALQNVDA
FWMMLGNLEAQHDVSALTAKGLSDTLETLYALPDASEASQKIELMTMHKS
KGLEFDTVILPGLGRPPRSDEKQLLSWLSFKGQHEQSYLVIAPFEQKGKA
AQKQPGLANVIKRYEEIKQSYELSRLLYVACTRAKQQLHLFGSVAVSEKA
FNGDAALMPKKKSLLECLWSLEAPAFEVLLTDYQFKDVEDNTQELLPKVS
RLPLERQGFWQTQREESELVKAARMGVVEDEDTDELLKVDVAAPSATPLS
SLHGGVLAKTVGNFVHAVFEQWAQQDLSSWDATLLESQRERYRYGLMQMG
LNRELLKTALERVMMSLSHALHNPKVRWALSREHTESAVELPLSAKEETG
QSNHIIDRTFVDEQNTRWIIDYKTSVFDLDKSEQDKKAFLQSQIDVYTPQ
LERYGQLLGAIENRPQKRVLYFSYLDEWIELN
>Tcr_1168 transcription-repair coupling factor
MSKNHSPYALLEADQISLKGQTSTWSLNNISESALALIEKAQNAPGLAVL
LTENMAEANKYSELLRFFAETDYPILSFPEWETLPYDQFSPHQDIISQRL
KTLYQLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGETVDIDAFT
RQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMGSRTPYRLDLFDDEIETI
RSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRSHFGDDARNS
QLYRSVKDGQTVDGLEYYLSLFHSNIATFFDYLPSDCLFFNQGDLQAQIR
QNWQDYQERYDIAQHNPDYPVLVPSELILSENETFSALKAFHRIQFSLQP
TDKATATFKTYPLPDLTIQSNSEYPLAKLNAFLDQYASEHNGRILYCAES
TGRRETLLTILSKHPQFKGKLPKQIDSWGEFKTSKAPYEIIVGPLEDSVY
TDDFCILSESQIFGQTVIQKRRRKRKHSEFDNAISNLIELDLGQPIVHFD
HGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASA
ETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDE
EAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLICGDVGFGKTEV
AMRAAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQ
SAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLIIIDEEHRFGVR
QKEQLKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAVQ
TFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAK
VETAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHR
ADKFGLAQLHQLRGRVGRSHHKAYAYLFTAGKALMTKDAEKRLTAIAKHD
TLGAGFMLASHDLEIRGAGELLGDGQSGQIHEIGFGLYSDLLDRAVRALK
SGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLVFYKRIASAEDNN
ALQELEVEMIDRFGLLPDQVKNLFETTRVKLVIDALNLKKVEASEAMIRI
QFGSNPNINPLELIKLIQNHPKNYQLKGQIELKYFDTMLEMKQRIQAIEL
IVATISNKE
>Tcr_1180 Histone-like DNA-binding protein
MNKTELVSAIAEEAGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTF
KVGERSARTGRNPQTGAEMQIPAAKVPKFSAGKALKEAVN
>Tcr_2121 Phage integrase
MGHIRVRRETNTLYFDFSYLKLRCREQTTLHDTKINRKKLETILERINAE
ITLGTFEYGKYFPNSSMLAKIEKATAKLVPGYTKTPLFKDFVEEWFSEME
PTWRKATADGYRSYLDKRLIPHFGEMEVSSITKAEILKYRAHVAKQSAGK
LKSKTINKFIKCLNMVMNEAADRYDFTPPHLNIKPLKEEKVHIDPFSIEE
VNQILAQVRSDWRDYLLVRFFTGMRTGEIDGLKWEHVDFSRREILIRETY
SAGRWEYTKNDGSQREIEMSTLVYNTLSKRFKERDPKSELVFCTGNGAPV
HTPNFLRRVWRPLLSYLKLKYRKPYQTRHTAATIWLAAGENPNWIAKQMG
HSTTSMLFTVYARYVPNLTRKDGSAMERLLASNIDGFHVAANKEESVDED
KPESSEVLEQQNEMAFWDRILQNTQDYRSGGGQ
>Tcr_0377 Integrase, catalytic region
MKNDLFSVGSVFNLENNQFIVSQTKKDGFKASNLRNSSTLTFTYEKAQEL
IDTHALIFQKDSLSQTEVSFEDLPQEEQKLALKKLKLIELLAERRITKVS
GTEKTKKAILDLSSDAGFTKAPHWQSVRKWCIEFTDAAGKIKGLYTNKNL
RGNRKYRLSAIVEEIIDTEIDSFIRPSQPRISTLCRNIETEIIKYNLDNP
TNVQRIPTRNTIIKRLNKTNLERRQRASKGSSTYELGLADSIAPFSTTHI
LERVEIDHTPLDIHLIHDVDSTLIGRPTLTALSDYHSGIVLGFQLSFEAA
SFAAVSSACLNAFLPKQEEIERLNIQGSWESHGIPETLVTDNGNEFWSDN
FSEVGMQLGMVIQYAPIRHPNYKGAIERLFGSINTLFLDDLPGVVRKPHK
KNDRYDPRQEALIPFTKFKCDFYDWVVNVYNNLPNEDGVTPKEIWNSSAK
QQPIPIEDNLEVQLALLASHGATLMGNGISFLGLKYNSDAQKSLFRRDGK
HKVSFKVNPYDLGEILVFDSRELVYITVPCLEYNYAKGTSIYEHREYKRI
ARKYKNQKLNNQDLMLAKIRQKNERDKIRGQNARRKTQVTTQKHTRIEKI
GAPTFDLIPSNSSKSNEVPVEQTTVIKVKTEDWDIE
>Tcr_0384 DNA topoisomerase IV, A subunit
MSQQMINYEGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRR
IIYAMSELGLKSTAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQDFS
FRYPLVDGQGNWGSVDDPKSFAAMRYTEAKLSKFSQLLLEETAQGTVDWV
PNFDGSLNEPSVLPARVPHVLLNGTSGIAVGMATDIPPHNLREVVNACVA
LLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYETGSGSIRQRAN
YFVEEGVNVVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDESDHEN
PIRLVVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSL
KTMLTEWLVYRTETVRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAII
REEDKPKPVLMERFGLSDTQAEAVLELKLRQLAKLEEMRIRGEQEELEAE
RKKIEKILGSAARMKTLVKKELLSDAEAYGDDRRSPLSDAKQAQAMSEQD
LLPSESITVVLSENGWVRAAKGHDVDGRTLGYKSGDAFCSQALGQSRQLS
VFLDDTGRAYSLPAHSLPSARSHGEPLTGRLSPASGAKFKQVMLGQPKEQ
YVLASSAGYGFITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVM
VVTDEPRMLVFEMSELPVLSKGKGNKLMQMPKGVSVKAIFAFKPGQKVEV
VAGKYSKSFGATAIEEAFSNRAKRGIPLPRTLKNTNEIRLAE
>Tcr_1858 Transposase IS3/IS911
MTKTRPTFSAEFKLESAQLVVDQGYTLNEAAKAMGVGLSTMGKWVKQLKD
ERRGIAPKGSALTPEQIEIQQLKKRIKYLEEEKDILKKATALLMSDSFNS
SR
>Tcr_1000 NUDIX hydrolase
MIDADGYRPNVGIIIVNKEGKLFWGKRLYQDAWQFPQGGVRENETPQQAV
FRELKEEVGLEPSDVRVLGRTKDWLTYDLPKHLIRHYSQPVCIGQKQIWF
LLGMLSDDEKINLNTHETPEFEGWSWVDYWVPVQNVVEFKQSVYHQALTE
LETHLHKFWTKEHVG
>Tcr_1754 excinuclease ABC, B subunit
MAKKFEIVSQYEPAGDQPVAITQLVEGLEDGEAFQTLLGVTGSGKTFTMA
NVIAKVQRPTIILAHNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEA
YVPASDTYIAKDSSVNEQIEQLRLSATKALMERKDVVLIATVSAIYGLGD
PDQYLKMILQLRLGDTISQRDILQQLTTMQYTRNDVELWRGCFRVRGDVI
DVFPAEAEEYAVRIELFDDEVDSLAWFDPLTGEVLTRPTRITVYPKSHYV
TPKERVLQTIEQVKVELVSRLEELRSLNKLVEAQRLEERTRLDIEMMSEL
GYCSGIENYSRYLSGRASGEPPPTLLDYLPKNALMFIDESHVTIPQIGGM
YKGDRSRKENLVTFGFRLPSAMDNRPMRFDEFEKIMPQTIFVSATPGKYE
AEHESKIVEQVVRPTGLLDPVLEVRPALTQVDDLLGEIRLRVEKEERVLV
TTLTKRMAENLTEYLEEHNVRVRYLHSDIDTVERIEIIRDLRLGEFDVLV
GINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNVAGKAI
LYADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKLNKKITDILEDSP
YAPKPGASAAKLKAAEADGEYSPQEMQRMTPAQLASEIKRMEKQMYQAAK
DLDFELAAKLRDDLKRLKSSMVGVGDLR
>Tcr_1313 conserved hypothetical protein
MSKCEGFAPIVPTQPKVLILGTAPSVVSLEKSFYYAHPRNAFWPILADYF
NQPVDSVEAKKALCLENDILLWDVLSACERQGSLDSAIKQPEANDFEALF
QTYPDLKAVLFNGKAAQNLFEKQVIKKQSLPEDLMFYSLPSTSPANARLT
FENKRVFWHKTLQQTLTK
>Tcr_0651 Tyrosine recombinase XerD
MPNPLTPEITDFIQYLRLNEGLSDNTLQAYQRDLKKTQLALGKTDLSQAS
REQLEDYLFQLHVDQVNPSSIARCLSALKRFYLFLILHNRIQQDPAAQLK
APQLIKKIPSVISEAQVEALLNAPDLTTPLGVRDKAILELMYASGLRVSE
LVNLPYEQLNLSAGLVQVTGKGNKERIVPIGQMAIEAIEAYLKSARPALV
GKQKWVSTLFVSRIGRTMTRQTLWHRIKNLALQADIRSQLSPHGLRHAFA
THLINHGADLRTVQLLLGHSDLSTTQIYTHVAKERLQSIHHQHHPRG
>Tcr_0012 DNA gyrase, B subunit
MTQEAENPIQPEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFE
VVDNGIDEALAGHCDKVVVTIHTDGSVSVTDNGRGIPVGLHEEEGVSAAE
VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIKREGHVWK
QTYRHGVPDEPLKAVSETDETGTEIRFLPSRETFTQTEFSFDYLLKRLRE
LSFLNSGVHIELLDKRDDRHEVFEFEGGIRAFVDYINANKTPINQEAFYF
STVRDDITVEVAMQWSEAYQESIFCFTNNIPQRDGGTHLSGFRAALTRTL
NQYAEKEGLTKKYKMSVSGDDAREGLAAVISVKVPDPKFSSQTKDKLVSS
EVKTAVETAMNEKLAEYLLENPKDAQSVFAKIVDAARAREAARKAREMTR
RKGALDIAGLPGKLADCQEKDPARSELYLVEGDSAGGSAKQGRDRRTQAI
LPLKGKILNVEKARFDKMLASAEVGTLITALGCGIGHEEYNPDKLRYHRI
IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQE
AYLKDDAELENYLLQSALDQAALWTSKETPAIQGVALETLAKSFLQTNRI
IDRLARRFSKTFLELMLDLSPIHVETLNDYDACEKWIADALPRLRAIGEI
QKVEYQLQVEPALQGETQFQIRLQQREHGTLTSQIYDEDFFAAAEYDHIA
KVAKQLKGLLSETAYIQRGEKQENVSSFKEAMDWLLSEAKRGQSIQRYKG
LGEMNPEQLWETTMNAEARRLLQVTISDAITADQVFTTLMGDEVEPRRNF
IESNALKAENIDV
>Tcr_0893 Holliday junction DNA helicase RuvA
MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTH
MHVREDAMLLFGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVG
LVDVGDAPALTKIPGVGKKTAERLVIEMRDRLKGWGNGASSNVSSKTMVS
SAPHNQKASAVEALISLGYKTAQADKMVQAVESGLSLEETIKKALQSVKL
>Tcr_2119 putative transposase
MIYTTNTIESLNSVIRKSIKNRKIFNHDNSAFKIVFLSIELTSKKWTMPI
RDWNSAMNQFMIIHEDRLDKYL
>Tcr_1030 endonuclease III
MNKQKRLEIFQRLSEAIPEPETELNYSTPFELLIAVILSAQATDKGVNIA
TDKLFPVANTPEAIYALGEEGLKEYIKTIGLFNTKGANIIKTCKMLIDLH
NSQVPDNRKDLEALPGVGRKTANVVLNTAFGHPTMAVDTHIFRVSNRTKL
APGKNVLEVEQKLLKNVPKEYIIPAHHLLILHGRYTCTARKPRCGACCIY
DLCEYKEKTA
>Tcr_0554 ATP-dependent helicase HrpB
MKELPIHALLPQLRQGLDTHSNVILQADPGAGKSTAVPLALLDSSWLAGR
KIIMLEPRRLAVKSIAYYLASQLGEPVGQRIGYQIRHERKGSSNTVLEIV
TEGVLTRRLQADPELNDVALIIFDEFHERSLQADLALALCLEVQSALRED
LKLLIMSATMDLTPLKTLFNRATTSVSVLQSAGRVFPVSVTYLSSALKSS
HPADWMPALQGLIRKALSETEQDILVFLAGQSDIRRLQKQLEDSLSEDFV
IRCLFGGLSLEEQELALLPDAQKRRKIVLSTNLAETSLTIDGIGAVADSG
FTRKALYDVSSGMTTLTTQRISQASAEQRKGRAGRLFSGKCYRLWTESQQ
AQLLPFEEPEITQSDLSDVCLELAQWGVSSPTELMWLTPPPVPHYEAAKT
LLISLGLLSEAGAVTELGQKSITFGLPSRLAKMLLVAEQVTTLDKGTAQA
LACDVAAILAERDVLSFSEGADLVKRLLALQAYREDRKQARRTYSMQLSA
MTQALKNAENWLKRLGGDAKNMALSLTELQRNAGALVAMAYPERLAQKRK
GQGVRYVMRNGKGVCLRKDDSLQSSSWLAIASVDGKRQEGQVYLATSITL
DTIKHLFSKQVEHKKAYRFDEEKKEISGREQTCLGKLLLDEKALSAPDQE
AIQSCLMAAIEKDLTLLSWPSKTVDWLNRIRWLAQYCEEVPDFSQAWLKS
NIATWLLPYLNEVSSVKALQKLDVFALLQAQLPYDVQQSLEQQAPRYYKT
PSQKLVPINYENHPTVSVVLQEVFGELSSPKLAWGQVSLTFELLSPARRP
IQVTSDLANFWRTSYFEVKKEMKGRYPKHRWPDEPLAEKAGHSVKPRS
>Tcr_0327 single-strand binding protein
MARGVNKVILVGTLGRDPEIKYAANGNAIANLNVATSEQWNDKASGQKQE
KTEWHRVVIFGKLAEIAGQYLTKGSQVYLEGKLQTRKWQDQNTGQDRYST
EVVIDFNGQMQMLGGGNRQGSDAPFDNNASGFGQQAPQAPQQNNMGMNNQ
PQQTQPGFGQTAPQQQAAPQQGFGGQPNNPAPAQQVPAYTANDFDDDDVP
F
>Tcr_1661 integration host factor, alpha subunit
MALTKADIAETLSDKFGFNKRESKELVEQFYDEMSEVLVKGEQIKLSGFG
NFELKDKSARPGRNPRTGEDVPISARRVVTFKPGQKLRAQIDNYGTA
>Tcr_1360 replicative DNA helicase
MSQDILFKTPPHSIESEQSVIGGLMLDNEKFSDISVILKAEDFYTQQHQL
IYTAIVHLSERNKPFDLITVIEMLESTGKLPDVGDKQYLIDLVSNTPGSV
NIEFYAETVREKAILRSLITVSNEISEASYFPQGKDIREVLDLAESKVMG
IAEHGSGKQREYQTMEVLLNKAVSTIDERFNSDGSITGLATKLNDFDEVT
SGLQNGDLIIVAGRPSMGKTTFSMNMAENIAMQGAPVAVFSMEMPGEQLV
LRMISSIGRIDAERIRTGKLQQEDWPNLNKAVSMLSKAQVFIDDTPALMI
TDLRARARRIDKDIRDAQYKKAIEAGVEDPESQITGLGMIVIDYLQLMRG
STNTDNRVNEISEISRGLKAIAKELSVPVVALSQLSRNLEQRPDKRPKMA
DLRESGAIEQDADLIIFIYRDEVYNPDTEDKGTAEIILGKHRNGALANIR
LTFIGQYTKFENHAGFDVPDDPY
>Tcr_0894 Holliday junction DNA helicase RuvB
MIETDRIVGGQSLEEDMYVQPTVRPQIITDYIGQQAVREQLQLSINAAKM
RQEHLDHVLLYGPPGLGKTTLSNIIAQEMGVTLRQTSGPVIEKPGDLAAI
LTRLEPHDVLFVDEIHRLSPIVEEVLYPAMEDFQIDIIIGEGPAAQSVKI
DIPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFYSIEELAQIVTRSANIL
GLSAEPDGALEIARRSRGTPRIANRLLRRVRDYAQVKGNGVITAEIADLA
LNLLEVDPLGLDKMDRRLLELLIQKFESRPVGIDSISAALGEERGTIEDV
IEPFLVQQGFLIRTPRGRVVTQTAYRHLGLTMPERNLEDE
>Tcr_0329 Phage integrase
MDAQKLKSPLNGAKSFENVFSTYGYEFYEGDLVWKLSRDTRINLEFVLSN
LDDSYIYGFIKTLSIICQTRSAGYGSSINSSFALFLKLTNAKTINSNTLI
NFRSGLKKVNVHRLGTMRTFLKLWHDLGYKGIDESLIDMLYSWRIPGSIK
GDVVKRLDPYDGPLTDIELLAFSEGLALAYERSDIDLFSYSMIKVFLATG
RRPKQIAELKLMDIQNEGNKFFLNIPRAKQRLGGFRTSFKRFAVTSDLYN
LVLLQKEELVLKVEKILGLRLPDELKLKLPLFPNFSVIEGNSLTIQQFEN
LIETDQVHLTTVNIDLIFKSVSKAVNVFSERTSDQLKVMPYRFRYTIGTR
AAREGFGKLIIAELLDHEDTQNAHVYVENIPEYARRINEKVGHLMAPYAK
AFAGVLVDSEDDAIRGKDKASRIRLNQDANIGTCGSYDYCGANVPVPCYA
CAHFQPWLDAPHQEVLDRLVEERGRIVELTEDLAVASANDRIIFAVSEVI
QRCEKRKQELTRA
>Tcr_1705 HEAT
MDPLKNFYNAELIHALADTLSLYEPNFKRDAFQKAVLNNEWEMLELKQRI
QTISLTLNRFLPNDFAQAAHILTQTAQHFKGFEYIFFPDYIEQFGQNHYD
ISVQALEAMTPYSSAEFAVRPLIERYPQKMMAQLLQWTQSENEHVRRLAS
EGCRPRLPWAKALKKFQHDPHPILPILEALKQDDSRYVRKSVANNLNDIS
KDHPELVLQTAQKWIGEHPHTDWILKHGCRTLLKQAHPETLALFGFAKPS
HDELSLFNVPAQVEIGASLKMIIALQTPQAKLGKLRVEVCLHYRRANGQL
SYKRFKVVEGYYGKEKKIEKYLSFQPLSTRRYYPGEHSLTLIINGQPMAE
KSFELVGKP
>Tcr_0323 conserved hypothetical protein
MQKLIWQMLLLWCFTSPLLAATSNTDWQNIKYIERAFIEVALKNEYRQTD
MRLIKWGVPIRYQFSYLGLPNNPFIENLAVTHLKQLHTITNHPINQATAG
QSANLQIIFTKDQHYQEAIHRYIQKESKALSRKSNCSASFQLNRQHEIIG
ANVVIPVDYVMSRGLLPACIVEETTQIMGLPNDSDWVFPSIANDKSQLDL
LTGLDYILLKLLYSPSLKPGMNLQQIRPILRSLLHQWKIAKLIQNASQKV
KESGLYPLIY
>Tcr_0866 DNA repair protein RecN
MLQELSIQNLALIEKLQLNFDTGFTTLTGETGAGKSILLDALGLALGERA
DSSLVRHGTPKADITADFDITSLPQVQTWLAENELDEDNACLLRRTLTSE
GRSKAYINGLPASVSQLKMLSSLLIDIHGQHEHQSLMHANKQLELLDAYA
QHDALLDETAKTYQAWQKLNQEYQALLNDQTDRQSKIELLSFQQQEFDNV
QPQADEFDALSEEQNSLSHANEIKQSVFTAYEIIEGDGGVTEKLSHAISE
LEKVSEFSPQLSEALQQLNTIQIECQEVADDIQSQNHQVELDPERLQAVD
ERLSELFGLAKKYQLDPEELVHKHQEIQTSLANLMQSGESLEQLKQNIDQ
AWSEFNQAAEALTASRQKAASQLSQTVTETMQTLGMQNGQFAIDVLPADK
ATRLGLDSTQFKVTANKGQPLQPLAKVASGGELSRISLAIQVASAEVASL
PSMIFDEVDVGIGGGIAEVVGQKMQQLGRHRQIFSITHLAQVAAYGDQQL
NISKRTENDQTTTQVIALKTEERVQELARMLGGMKITEQTLKHAEEMLQT
AQSNR
>Tcr_1336 conserved hypothetical protein
MQVSRRGFSLGIDRIGDLVFLSMKVQGKLTHDDYSQMTPMIDSALKGVKD
PKVKALVDLTEMEGWELRAAWDDFKMGLSYGGEFEKIAIIGHKKWQDFIA
KVGSWFISGNIKRFESEEEAINWLSEDLDE
>Tcr_1102 conserved hypothetical protein
MYEFSVEQAANNIHDHRTKEYFREVMNNYFNGNHRSALVMLWTVVICDLV
YKLQYLKDIHSDEKAESILNEMSEFQEKNPANPKWEENLLKEIFLRTSLL
EAHELDSLQALHRHRHLSAHPVISKADILFRPNREMVLSDIRVALDSVLT
KPPILTKQVFTELAEDLEKVKDLFADNSQLKRYLESKYFKNLNEEVSAQI
FKSLWRVTFKIEDERCNENRIINSRAVRILFDRNRETLTEYIKNNSPYFS
EISDGTPLRQAVFFLGDYPHLFNLLSEATREVVSVKAKSDVDLLAVSYFL
SKNISEHIDMLINLIKVNHVCSFGGTHKIHINHIHDLMRHAESAGIKSRI
NKLLVVMYVNAINFDAADSLFSQFIKPHISKFDKADIKLLIEGIGNNNQT
HWRGRADSDHSLVVERAMEVIDGFDVSEYQFLPEPEEP
>Tcr_1594 DNA mismatch repair protein MutS
MADTIKHTPMMQQYLAVKADYPNQLLFYRMGDFYELFYEDAVKASELLEI
TLTARGKSGGNPIPMAGIPHHSAEGYLAKLVKLGQSVAICEQIGDPSISK
GPVERKVVRVITPGTLVEDALLEDKSENLLAAIFQQADEYGLATLDVASG
RFEATLLPDSTQLSAEVERLKPAEIILPDDPLFKQNLPESIQNRPGLVDY
PSWHFEKDSCRKRLIDHFGTQDLVAFGCDQLPAVISAAGVILHYAQSMLQ
NTLAHVFSLQTYQADDALALDAMSRRNLELDTNLTGGKNHTLFAILDNAT
TAMGSRLMNRWLNQPLRNRDIINDRFNAIEDIIEQHSQEEFRSALKPIGD
LERILSRVSLYSARPRDILHLGRSLNQLPELQALLKQQTANKWQQLSKQL
GLYPELASQLETALVESPPMLMRDGGVFAEGYDSELDELRNLKNQAGDYL
LALEAREKERTGITTLKVGYNRVHGYYIEVSKLQSDNVPADYVRRQTLKA
QERYITPELKEFEDKVLSANEKALAREKWLYQQLLERLNQDLQALQRTAA
ALAETDVLVSLARQAINLNLTRPTLSSEPGIDIKQGRHLTVEALSNQPFI
PNDTCFDEQRRLQIITGPNMGGKSTFMRQTALIAIMAYMGSFVPAESATL
GPIDRIFTRIGASDDLTSGRSTFMVEMTETANILHHASPESLILMDEVGR
GTSTFDGLALAWAIAEQMAQSIQGYCLFATHYFELTTLVEQFNNTVNIHL
SAIEHQDKIVFMHQVEEGPASQSYGLQVAALAGVPTAVIDKAKKHLHRLE
NQTAAQQQTSGTASSAKESVQQFDLFAQPALPEAIETMLTDLKALSVDDL
TPRQALEKLYEVTNTVKNASE
>Tcr_0375 hypothetical protein
MKLLFSDSRKPDECVASYLIRTAENNGFRRVSHLLNHTDLHWKNSRLPIP
TILSGKVEVDTLLSQLGLEPIGKTKLSEFHDLFRKITDTPKILSKHPKVC
PLCLKENGYAKESWNLLPVTACTKHKIMLIDSNNNGRMLSWYRPYLGFFD
HKQPIKKIIKAPTALIELSKLFERFLDNPSARCKANPVLFKGLTANECLS
ILNFIAHFQAKAEGESLLMTQNNLSIASQYQKAYSLIKKWPDQFHVLLST
FASNPMTALESQGIRKHFRTLHDQLHLQRENKGIVRMKEEFERYLLSNWP
TALNESRLKRISIKAVEKQQLSITEACKLLNRRIPKVSHLVQIGILTEHE
FRGKKYYERTELEQYLKTVAENWNFQQTCLELNVSKSTILRLIDAKFIHA
IIKPSKHNRDWLIDKKETIALISKLKRNACSEDNLTKCYSLQGFLKLGNT
YEDTLSMMLERQLTYKFNKDTAKPNGLHQFVQFQLQII