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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pKB1

Number of genes found: 7

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# Gordonia westfalica, type strain: DSM44215

>gid:893021    putative transposase
MLKDVMNMSERKACKVVGLARSAYRQLPQAHTPADPDAGLRQQLRTYARQ
NPRHGFRRAWAWLRFDEGDTVNKKKVHRLWKEEGLQVRRAPRRKRAGQSS
VPIVTADAPKVVWALDFQFDSTVDGHKIKIASMVDEHTRMSLLNIVDRSI
AADRLIEELKKTFAIWGGPPKVLRMDNGPEFISEALQTFCAGSVGISYIP
PGTPWNNGFIESFNNRLRDECLNRNCWPTLLEARMVIEDFKDDHNHRHRH
SALGYKTPAEYAARCTHQHHPVGCEID
>gid:893097    putative transposase
MPKKIDPEVRSRALRLLETHGGEYTSLTAAAEAIAKQVGVGGETVRRWAV
QAQIDAGARSGTTTKESAEIKRLKAENKQLREDVAILKAATTFFAGELDP
RNR
>gid:893098    putative methylase; putative helicase
MPQSEAGLPLTAWASTRVAPARRPDGSVVYIKADHVVAGLEPDPTPADPD
SQEPASTPAVVDEDTTTSTTAADEPGSAARFTHPGTVLVPSGAKSRARAN
IAALEVLTETSRTGRSATAAEHEVLARWSGWGAAADIFDESKSEWAPERE
QLRALLDSEQWRQAKASTLNAHYTDPAIAQTMWSAMTRAGFDNGLVLEPG
CGSGTFIGLAPPGAQMVGVELDPTTAQIAHLLYPDAQVRLEGFETTRVPD
GSFAVNHPRFDTASF
>gid:893087    putative TraA protein
MTATIHKLTAGDGYEYLTKSVAAMDATDKGRVSLADYYSAKGDSPGQWIG
SGLAGLADVGSGLDVADELAEARTVEAGSMVSAAQMKALFGEGRHPNATA
IEQHAVASSDCRTAEALAATKLGNAYAVYNEFPEFLQELAVVFRDHNLAR
GERWDAVIDDDTRAALRTELGRERFTKTYRRPPRDSRELSGFIAQESRRR
QSAVAGYDMTFSPVKSVSALWAVAPLPMAEKIEAAHRQAVADALAFIERE
ACLSRLGTDGIAQVDTDGLIAAAFTHRDSRAGDPDLHTHVAISNKVRVRD
AAGITRWMALDGTPLFKATVSASEVYNSRIELYLQRDLGVSFSERFSADV
RKRPVREIDGVSAELMARWSSRRAAIEERIDELSKQFLADHGREPTTGEA
FDLAQQATLDTREAKHEPRSYAEQRQAWRADARRILGGDRAISDLVHEAT
HPRPRTREHPEFTDELCTELAANCIENISATRARWQRPHLRAEAERQLRA
RDFAGITDTDELAAAVERIVDTALAADTSVAVSSDALDGDLNEPEVLRRA
NGESVFVRHDVALHTSTDILAAEHRIVAAAKRTDGRRLDETTVDIALLEQ
AANGRELNAGQAAMVRELATSGRRVQLVLAPAGTGKTTAMRTLARAWTDS
GGTLIGLAPTAAAAAVLRDELDTTTDTAAKLVQLATAERELAQTRALAAT
PRWRTIGKPELANKVAAAKKTLADPTYQNLTLPDWYTQIGPDTLVVVDEA
GMASTSDLDEVIRCVAARGGSVRLVGDDQQLASISAGGVLRDVAHETGAL
TLSQVVRFSDAAEGAASLALRDGDPAALGFYADHGRIHVESDAAAADDAY
RAWARDRAQGRDTVMIAATRDTVNALNERARADRLAAIDPHLHGPELRLS
DGLSASVGDIISTRSNRRDLRVSATDWVRNGDRWRVTHIGADGTLTAQHL
DLNRHVQLPADYVAEHTTLGYASTIHAAQGMTADTCHVIGSDALDRQLLY
VAMTRGRHGNHIYLPTTETDPHNATTPKARHPQTGLETLAAILGRDGAQQ
SATTAQRDAVDPFLRLSRAAAAYDHALGAAAEHTLGAKALRDLEHDADAL
YSTHTGTPAGTLTACAAWPTLRTHLATLALGGDDPIARLQAAITHRELAT
AADPAAVLDWRLDPTQQHSAGGGPLPWLPRVPAGFDDPQWAPYLTRRDAL
VTDLAAAVTERATAWDATTAPMWARPLLLADPDRGRELVAELAVFRAARG
VDDTDRRPAGPRPDSIALARRHAALTERADALITTTAEAARYADLARDLD
PHLLADPYWPELADHLSLAARAGLDVDALARDALADNPLPTEMPAAALWW
RLSGQLAPAAAEATNTGLRPDWADALVGIVGDRAAEAILTDRAWPALVAA
VNAADPAQWTPHNLLDLADTLLHHGADDDHTVRLDEYARLLTWRVELLVT
HSSHATDLAPPAEAPPTPEDEAAAEAAAEAAGLSDPWAQVPASGPVADAD
HELAGVDEDYLAALTATEPAPEPGVDDLDVEELDRYEDLAFAEFAADVVA
APDRFAAPSDLAECIALRYELTAQLAELAADMMQLREAINAGTSAHQQAM
APHVLALRAAADHQFAAAADTAGHHHDLMMAEQLIEDLTNQATALRRTAA
QLRATDTTDLDPLSDAEAPDLAALRAEADATALEWRITAATADRDALTAV
YDEANARLESAIAQSGGVRVTDTDVELMRLQASELDELNLADLRARRADL
TTRIYRIDNRLNHVHALTHTAHHHRDTYLMPTTATGPVATPDPVAPSATH
PATEATATAVVEDVDAELRDWLRADPLRAMSDDQLTTHLRTLTRRHTLAV
DDLRTSRPAPERTPRVRAEHAELADTVDRIATARTAGRALADAATRVAGA
RAELAGLPPAGRGRKARVEHDQHHQRLAEAVAAAERQHQYLAAAHEQTRR
DVGVPEHQWDDLSARAADTATLAGELAAAEQTDARARQLHQTAIDDRDAA
AAAIAATRAEVARRHDLPGRARAVEDSIRATLDDTGTQAEPATVTSASAA
LSPRTNDLPPDTAPRRDSGYDI
>gid:893038    putative transposase
MTDTIGGVDAPVAGPVQTGQEHDVTTADAVRELSKAEQALVSDLVRSSRA
QGVALTGPDGLLKALTKSVLEAALDEEMTEHLGYDKHDVAGRNTGNSRNG
TRTKRVLTDACGQVPIEVPRDRNGTFDPVIVGKSKRRVTDVDRVVLSLYA
KGLTTGEISAHFADVYGASVSKDTISRITDRVIEEMVGWWARPLEKVYAA
VFIDAIMVKIRDGQVRNRPIYAAIGVDLDGHKDILGMWAGNGGGESARFW
LAVLTDLKNRGVRDIFFVVCDGLKGLPDSVSAAFPLATVQTCIIHLIRNT
FKYASRKYWDKISADLKPIYTASTAAEARLRWEEFAERWGTPYPAIVTLW
ESAWEEFIPFLDYDVEIRRVLCSTNAIESLNARYRRAVRARGHFPNEQSA
LKTLYLVTRSLDPKGTGQTKWAVRSEASAQRPGNHVRRSYARSRRTLTRR
AIGKPPLTPNIGQTPLRPRQLHRLAGAQSYGATEEADECQIHRGVGLAVR
WPSMVAHPVTQSRSVGLSRTRRVLKAEWVSGSVAGWRDGPRGSVLR
>gid:893096    putative transposase
MIVAFIDQMRANGFAVESICRVLRGQGCQIAARTYRAWRSRTPAARTVSD
AHVVDAVRTVVWRTGDDGRRKMTPEGLYGRVKMRAHLHRTTLPGVSYGAV
DRAMKVLGHQGIRRSKGVRTTVRSADGVRAEDLLNRQFSAAEPNRVWVTD
FTYCRTWAGWVYVVFIIDVFSRRIVAWHASTSKSVELVTVPLRMALWQRN
REGHPVKAAELIHHSDAGSQYTSVTLTERLRLEDIAASIGSVGDAYDNAL
AESVNGLYKTECIRTTIFHSGPYRTISDVEFATAGWVDWYNNSRLHSSIG
QIPPTEFETLHYAGLGPEDQPTLEAAQNLG
>gid:893095    putative methylase; putative helicase
MIGNVPFGGFTVHDPIHNPARHRIHNHFLLKSLNLTAPGGYVMAITTAGT
LDAASDKARRDMHAVADLVGAVRLPSTAFERVAGTQVVTDVLVFRRREPD
AAAPADAEWLHSDLVALPDRTGETTEIGVNRYFTTHPEHVLGTMRVDRGL
YRDGMLVVAAEPGNDVAADLDDRLTGIVDAALERGDGLFLADDTTTAAGM
EFTAGALDADALYGEDIPIGHVSYDETTGVFTRRGIDGDEPMKVPATRTT
ETRHLLRLRDLFAATIAAQRTQSSRAERDALRADLNEVYDAYLNTYGPVN
RSKLVGGKERTAEQAAKKFAELEAKWRTAHRDADGADYPGPLPEDVAAEL
DEKAWQVSAPSRRQTHLDAVRDDPGMAGVLALERYDDQTGTVSKNAVFSR
DVVVAPVPVSRADTPAEAVAISLGERGRVDLDRVAELLDQPTTHARESIR
GLVYPDPDMPEDLIPAATALSGNVRAKHARAAEAASTDPGNRDWAELTQA
LAQVIPADKQPSQIGSVKLGPTWIEPRDYEAFVRETFGADSVQVSRAAGT
WLVEVPPFERNSALMRTEYGADNADRKNKALDAVDLTEMLLNQRSIVVKN
SKPAQEEGAPEVDAQATILAQVQAEKITTEFRSWLWSDDERRDRLVAEWN
RRFNTWVRPEHDGSRLALPGLSPVFEPHPYQRDAVARILAEPTVLLDHVV
GAGKTGTMFMSAMEAKRRGLVTQPWIVVPTHLIEQFGREVKMWYPAANVL
VGRKGMSPEDRRVFAAQTATSDWDMVIIPASVFSAIRVHPQRRADYIAGQ
VAELDAELSASAGDMTQATVKKVERAKKELEDRLATATEQATKDHGVLFE
DTGADYLFVDEAHEYKNKGRQCTIDSLSLTGSNKAEDLSMKLDYLRERRQ
HQAAAAGRIITPGAERVATFATGTPIANSLAESWVMQQYLRPDVLEVAGV
RSITDWAASFTATRSETIPNATGTKLRVVSKVSAFANPKEMFAMAAQYTD
VVVREQVPANLPVHDGRQIITSTPGQERRDFIADLDYRADHLDPRRADID
NVLKILNDGRNVALDPALANLDPDPGNTRADAVAEQVARIYHATADNEYL
TEEGERSPIRGALQLVFCDRGTPRPDGPSVYSNLKDLLVEQYQVPAEKVA
FIHDAKSPSQKLALQADCRAGRIAVLVGSTSKMGTGMNVQGRLIGLHHMD
VPWRPADLEQREGRIIRQGNQNPRIEILNYVTAGTTDTVMWSKVESKAAF
IEQAKRGQLDDVAEVDDIADDSMSEAAAATKAAATGDERFLEMATLEDEV
KSLSALASAHADSRSHARRVVAAADRAIPRLEGSIEKLDLLLAGHQEWID
AGKEFVVTGARPLSKRPERSEVLLRRVTAVYHELKGAGMKQSMPIASIPS
GLQAHASREFAQDKIHVWLDCPGRPGFTLDASQVFTTAERRTATASGLAT
RLENLYTGLDDTRAQLVADIASYRREVEVNAPRIDAPFTQADELQTKQVR
LRQLRMEIERAQQSEEAVAARQAAEERMRSAGREPGWSLELNPTPVMVEE
AGLDHAADYIAVMKRSHQHQAELHQAEKDTTTAEPGIGTLLADTRPPPEA
ERTENTGSQPPPHDPLDDGTQAQRDPDLDL